Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
RPL3L	6123	genome.wustl.edu	36	16	1942995	1942995	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	16	1942995	1942995	C	T	SNP	RPL3L	NM_005061	human	genbank	54_36p	-1	reviewed	silent	c.246	p.P82	0.497	superfamily_Translat_factor,HMMPfam_Ribosomal_L3	superfamily_Translat_factor,HMMPfam_Ribosomal_L3,PatternScan_RIBOSOMAL_L3	-	no_errors
ARSF	416	genome.wustl.edu	36	X	3040320	3040320	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	X	3040320	3040320	C	A	SNP	ARSF	NM_004042	human	genbank	54_36p	+1	reviewed	missense	c.1496	p.T499N	0.890	superfamily_Alkaline phosphatase-like,HMMPfam_Sulfatase	superfamily_Alkaline phosphatase-like,HMMPfam_Sulfatase,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors
ANO2	57101	genome.wustl.edu	36	12	5579037	5579037	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	12	5579037	5579037	G	A	SNP	ANO2	NM_020373	human	genbank	54_36p	-1	validated	nonsense	c.2110	p.R704*	1.000	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	17	7518990	7518990	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195T	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
MYH8	4626	genome.wustl.edu	36	17	10264181	10264181	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	17	10264181	10264181	T	G	SNP	MYH8	NM_002472	human	genbank	54_36p	-1	validated	missense	c.89	p.Q30P	1.000	NULL	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
ILF3	3609	genome.wustl.edu	36	19	10659362	10659362	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	19	10659362	10659362	C	A	SNP	ILF3	NM_012218	human	genbank	54_36p	+1	reviewed	missense	c.2400	p.D800E	0.999	NULL	HMMSmart_SM00572,HMMPfam_DZF,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	-	no_errors
DOCK6	57572	genome.wustl.edu	36	19	11215520	11215520	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	19	11215520	11215520	G	A	SNP	DOCK6	NM_020812	human	genbank	54_36p	-1	validated	silent	c.1062	p.C354	1.000	NULL	HMMPfam_Ded_cyto	-	no_errors
DKK3	27122	genome.wustl.edu	36	11	11980506	11980506	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	11	11980506	11980506	A	G	SNP	DKK3	NM_001018057	human	genbank	54_36p	-1	reviewed	silent	c.268	p.L90	0.017	NULL	HMMPfam_Dickkopf_N	-	no_errors
LOC388076	388076	genome.wustl.edu	36	15	19941981	19941981	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	15	19941981	19941981	G	A	SNP	LOC388076	XM_931016	human	genbank	54_36p	-1	model	missense	c.230	p.T77M	1.000	HMMPfam_Ribosomal_S8e	HMMPfam_Ribosomal_S8e	-	pseudogene
HNRNPR	10236	genome.wustl.edu	36	1	23520724	23520724	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	1	23520724	23520724	C	T	SNP	HNRNPR	NM_001102398	human	genbank	54_36p	-1	reviewed	missense	c.695	p.R232H	1.000	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
DOCK5	80005	genome.wustl.edu	36	8	25317066	25317066	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	8	25317066	25317066	C	T	SNP	DOCK5	NM_024940	human	genbank	54_36p	+1	validated	missense	c.5002	p.R1668W	1.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
BAI2	576	genome.wustl.edu	36	1	31977760	31977760	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	1	31977760	31977760	C	A	SNP	BAI2	NM_001703	human	genbank	54_36p	-1	reviewed	missense	c.2231	p.G744V	1.000	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
PSMB9	5698	genome.wustl.edu	36	6	32935168	32935168	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	6	32935168	32935168	C	G	SNP	PSMB9	NM_002800	human	genbank	54_36p	+1	reviewed	missense	c.541	p.L181V	0.999	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome,PatternScan_PROTEASOME_B	-	no_errors
LRRFIP2	9209	genome.wustl.edu	36	3	37165401	37165401	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	3	37165401	37165401	G	A	SNP	LRRFIP2	NM_006309	human	genbank	54_36p	-1	validated	silent	c.78	p.N26	1.000	NULL	HMMPfam_DUF2051	-	no_errors
KIAA0564	23078	genome.wustl.edu	36	13	41305562	41305562	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	13	41305562	41305562	C	A	SNP	KIAA0564	NM_015058	human	genbank	54_36p	-1	validated	missense	c.1531	p.V511F	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMSmart_SM00382,superfamily_vWA-like,HMMSmart_SM00327	-	no_errors
PLEKHH2	130271	genome.wustl.edu	36	2	43823471	43823471	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	2	43823471	43823471	G	A	SNP	PLEKHH2	NM_172069	human	genbank	54_36p	+1	validated	silent	c.3309	p.R1103	0.644	HMMSmart_SM00139,HMMPfam_MyTH4	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M	-	no_errors
RINL	126432	genome.wustl.edu	36	19	44054315	44054315	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	19	44054315	44054315	C	T	SNP	RINL	NM_198445	human	genbank	54_36p	-1	provisional	missense	c.7	p.D3N	0.707	NULL	superfamily_SSF109993,HMMPfam_VPS9	-	no_errors
ZNF488	118738	genome.wustl.edu	36	10	47991005	47991005	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	10	47991005	47991005	G	A	SNP	ZNF488	NM_153034	human	genbank	54_36p	+1	provisional	missense	c.467	p.R156Q	0.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
TROAP	10024	genome.wustl.edu	36	12	48011407	48011407	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	12	48011407	48011407	C	T	SNP	TROAP	NM_005480	human	genbank	54_36p	+1	validated	missense	c.2242	p.R748W	0.001	NULL	NULL	-	no_errors
DMXL2	23312	genome.wustl.edu	36	15	49529708	49529708	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	15	49529708	49529708	C	T	SNP	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	silent	c.8811	p.T2937	0.900	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
ZNF613	79898	genome.wustl.edu	36	19	57140523	57140523	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	19	57140523	57140523	A	G	SNP	ZNF613	NM_001031721	human	genbank	54_36p	+1	provisional	silent	c.1575	p.S525	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
CHD7	55636	genome.wustl.edu	36	8	61816950	61816950	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	8	61816950	61816950	G	A	SNP	CHD7	NM_017780	human	genbank	54_36p	+1	reviewed	silent	c.405	p.G135	1.000	NULL	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors
DPP3	10072	genome.wustl.edu	36	11	66015419	66015419	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	11	66015419	66015419	G	A	SNP	DPP3	NM_005700	human	genbank	54_36p	+1	reviewed	missense	c.787	p.E263K	1.000	HMMPfam_Peptidase_M49	HMMPfam_Peptidase_M49	-	no_errors
UBAC2	337867	genome.wustl.edu	36	13	98818096	98818096	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	13	98818096	98818096	G	A	SNP	UBAC2	NM_177967	human	genbank	54_36p	+1	validated	missense	c.757	p.V253I	0.918	NULL	superfamily_UBA_like,HMMPfam_UBA,HMMSmart_UBA	-	no_errors
EPHA6	285220	genome.wustl.edu	36	3	98921824	98921824	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	3	98921824	98921824	C	A	SNP	EPHA6	NM_001080448	human	genbank	54_36p	+1	provisional	silent	c.2814	p.A938	0.999	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,superfamily_Growth factor receptor domain,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
C7orf43	55262	genome.wustl.edu	36	7	99592691	99592691	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	7	99592691	99592691	G	A	SNP	C7orf43	NM_018275	human	genbank	54_36p	-1	predicted	silent	c.807	p.V269	1.000	NULL	PatternScan_ODR_DC_2_2	-	no_errors
MYL10	93408	genome.wustl.edu	36	7	101046263	101046263	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	7	101046263	101046263	T	C	SNP	MYL10	NM_138403	human	genbank	54_36p	-1	validated	missense	c.490	p.K164E	1.000	superfamily_SSF47473,HMMSmart_EFh	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
GPR128	84873	genome.wustl.edu	36	3	101896299	101896299	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	3	101896299	101896299	T	C	SNP	GPR128	NM_032787	human	genbank	54_36p	+1	provisional	missense	c.2158	p.Y720H	0.454	HMMPfam_7tm_2	PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2	-	no_errors
RNF20	56254	genome.wustl.edu	36	9	103342417	103342417	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	9	103342417	103342417	C	T	SNP	RNF20	NM_019592	human	genbank	54_36p	+1	reviewed	nonsense	c.241	p.R81*	0.997	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
SLC16A1	6566	genome.wustl.edu	36	1	113258214	113258214	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	1	113258214	113258214	C	A	SNP	SLC16A1	NM_003051	human	genbank	54_36p	-1	validated	missense	c.1325	p.G442V	1.000	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
ZBTB20	26137	genome.wustl.edu	36	3	115552388	115552388	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	3	115552388	115552388	G	A	SNP	ZBTB20	NM_015642	human	genbank	54_36p	-1	provisional	silent	c.1008	p.P336	0.090	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ADAD1	132612	genome.wustl.edu	36	4	123536929	123536929	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	4	123536929	123536929	G	A	SNP	ADAD1	NM_139243	human	genbank	54_36p	+1	provisional	missense	c.671	p.R224H	1.000	HMMSmart_SM00552	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358,HMMSmart_SM00552,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_A_deamin	-	no_errors
PVT1	5820	genome.wustl.edu	36	8	129020970	129020970	+	RNA	SNP	C	T	T	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	8	129020970	129020970	C	T	SNP	PVT1	NR_003367	human	genbank	54_36p	+1	validated	rna	NULL	NULL	0.013	-	-	-	no_errors
LOC392100	392100	genome.wustl.edu	36	7	136050452	136050452	+	RNA	SNP	G	G	T	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	7	136050452	136050452	G	T	SNP	LOC392100	XR_017485	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ARHGAP15	55843	genome.wustl.edu	36	2	143629554	143629554	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	2	143629554	143629554	A	G	SNP	ARHGAP15	NM_018460	human	genbank	54_36p	+1	validated	missense	c.25	p.T9A	0.138	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors
FAT2	2196	genome.wustl.edu	36	5	150894222	150894222	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	5	150894222	150894222	A	G	SNP	FAT2	NM_001447	human	genbank	54_36p	-1	reviewed	missense	c.9368	p.F3123S	0.996	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
LOC149501	149501	genome.wustl.edu	36	1	155309749	155309749	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	1	155309749	155309749	C	T	SNP	LOC149501	XR_017100	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.028	-	-	-	pseudogene
RBM46	166863	genome.wustl.edu	36	4	155940085	155940085	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	4	155940085	155940085	A	T	SNP	RBM46	NM_144979	human	genbank	54_36p	+1	validated	missense	c.1321	p.S441C	0.970	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
LOC100128269	0	genome.wustl.edu	36	7	156683667	156683667	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	7	156683667	156683667	C	T	SNP	LOC100128269	XR_038661	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.186	-	-	-	pseudogene
ADAM23	8745	genome.wustl.edu	36	2	207116247	207116247	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	2	207116247	207116247	G	A	SNP	ADAM23	NM_003812	human	genbank	54_36p	+1	reviewed	missense	c.682	p.V228M	0.891	HMMPfam_Pep_M12B_propep	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_1"	-	no_errors
GPR55	9290	genome.wustl.edu	36	2	231483616	231483616	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	2	231483616	231483616	G	A	SNP	GPR55	NM_005683	human	genbank	54_36p	-1	validated	silent	c.306	p.F102	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
MGA	23269	genome.wustl.edu	36	15	39846708	39846730	+	Frame_Shift_Del	DEL	TTGGCACCTGTTGTGGCTAAATT	TTGGCACCTGTTGTGGCTAAATT	-	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	TTGGCACCTGTTGTGGCTAAATT	TTGGCACCTGTTGTGGCTAAATT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	15	39846708	39846730	TTGGCACCTGTTGTGGCTAAATT	-	DEL	MGA	NM_001080541	human	genbank	54_36p	+1	provisional	frame_shift_del	c.9283_9305	p.L3095fs	0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.995:0.989:0.989:0.988:0.982:0.987:0.997:0.997:1.000:1.000:0.999:0.986:0.984	NULL	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_2,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353	(deletion:cds_exon[39845494,39846770])	no_errors
SIX4	51804	genome.wustl.edu	36	14	60260316	60260318	+	In_Frame_Del	DEL	GCC	GCC	-	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	GCC	GCC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	14	60260316	60260318	GCC	-	DEL	SIX4	NM_017420	human	genbank	54_36p	-1	validated	in_frame_del	c.230_228	p.A77in_frame_del	0.893:0.952:0.971	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	(deletion:cds_exon[60259683,60260545])	no_errors
OR8B4	283162	genome.wustl.edu	36	11	123799419	123799419	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-29-1710-01A-02W-0633-09	TCGA-29-1710-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	be957b7d-5bc0-4e26-8219-b8082b200f93	6b10bb23-a9a0-4021-a0d4-e05f0ed727ba	11	123799419	123799419	A	-	DEL	OR8B4	NM_001005196	human	genbank	54_36p	-1	provisional	frame_shift_del	c.559	p.S187fs	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[123799048,123799977])	no_errors
