Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ENSG00000215615	0	genome.wustl.edu	36	NT_113889	39891	39891	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	NT_113889	39891	39891	G	A	SNP	ENSG00000215615	ENST00000400681	human	ensembl	54_36p	-1	known	silent	c.426	p.R142	NULL	HMMPfam_Tektin	HMMPfam_Tektin	-	no_stop_codon
LOC100134205	0	genome.wustl.edu	36	6	4419946	4419946	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	6	4419946	4419946	T	A	SNP	LOC100134205	XM_001716692	human	genbank	54_36p	-1	model	nonsense	c.163	p.K55*	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
AKR1C4	1109	genome.wustl.edu	36	10	5237730	5237730	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	10	5237730	5237730	C	T	SNP	AKR1C4	NM_001818	human	genbank	54_36p	+1	reviewed	missense	c.380	p.T127M	0.003	superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red	superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_1,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3	-	no_errors
LAMA1	284217	genome.wustl.edu	36	18	7022153	7022153	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	18	7022153	7022153	C	T	SNP	LAMA1	NM_005559	human	genbank	54_36p	-1	validated	missense	c.2186	p.R729H	0.989	superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00180,PatternScan_EGF_LAM_1	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMSmart_SM00282,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518305	7518305	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	17	7518305	7518305	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.701	p.Y234C	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
ATG7	10533	genome.wustl.edu	36	3	11315845	11315845	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	3	11315845	11315845	C	T	SNP	ATG7	NM_006395	human	genbank	54_36p	+1	validated	missense	c.170	p.A57V	0.895	NULL	superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_ThiF	-	no_errors
LOC441956	441956	genome.wustl.edu	36	21	13973879	13973879	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	21	13973879	13973879	G	T	SNP	LOC441956	NM_001013729	human	genbank	54_36p	-1	predicted	missense	c.323	p.P108H	0.394	NULL	NULL	-	no_errors
LOC644637	644637	genome.wustl.edu	36	22	14742633	14742633	+	RNA	SNP	C	T	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	22	14742633	14742633	C	T	SNP	LOC644637	XR_017623	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
MAP1S	55201	genome.wustl.edu	36	19	17699637	17699637	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	19	17699637	17699637	G	T	SNP	MAP1S	NM_018174	human	genbank	54_36p	+1	validated	missense	c.2444	p.G815V	0.001	NULL	NULL	-	no_errors
SMC6	79677	genome.wustl.edu	36	2	17753450	17753450	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	2	17753450	17753450	A	G	SNP	SMC6	NM_024624	human	genbank	54_36p	-1	validated	silent	c.1782	p.D594	0.996	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000161132	0	genome.wustl.edu	36	22	18674183	18674183	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	22	18674183	18674183	C	A	SNP	ENSG00000161132	ENST00000292728	human	ensembl	54_36p	+1	known	silent	c.138	p.P46	0.005	HMMPfam_Pro_dh	HMMPfam_Pro_dh,superfamily_FAD-linked oxidoreductase	-	no_start_codon
ENSG00000181984	0	genome.wustl.edu	36	15	19031800	19031800	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	15	19031800	19031800	G	T	SNP	ENSG00000181984	ENST00000318268	human	ensembl	54_36p	+1	known	missense	c.372	p.E124D	0.887	NULL	NULL	-	no_errors
LOC728498	728498	genome.wustl.edu	36	15	28693113	28693113	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	15	28693113	28693113	C	T	SNP	LOC728498	XM_001724395	human	genbank	54_36p	+1	model	silent	c.1275	p.G425	0.856	NULL	NULL	-	no_errors
MAGEB3	4114	genome.wustl.edu	36	X	30164590	30164590	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	X	30164590	30164590	G	T	SNP	MAGEB3	NM_002365	human	genbank	54_36p	+1	reviewed	missense	c.628	p.V210L	0.632	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
ENSG00000209612	0	genome.wustl.edu	36	11	31813835	31813835	+	RNA	SNP	C	A	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	11	31813835	31813835	C	A	SNP	ENSG00000209612	ENST00000386877	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.002	-	-	-	pseudogene
NOTCH4	4855	genome.wustl.edu	36	6	32288332	32288332	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	6	32288332	32288332	G	T	SNP	NOTCH4	NM_004557	human	genbank	54_36p	-1	reviewed	nonsense	c.2577	p.C859*	0.946	HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF	HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_NODP,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	no_errors
RASGRP3	25780	genome.wustl.edu	36	2	33637403	33637403	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	2	33637403	33637403	G	C	SNP	RASGRP3	NM_170672	human	genbank	54_36p	+1	validated	missense	c.1866	p.E622D	1.000	NULL	HMMSmart_SM00229,superfamily_Ras GEF,HMMPfam_RasGEF_N,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	-	no_errors
CRKRS	51755	genome.wustl.edu	36	17	34900362	34900362	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	17	34900362	34900362	C	T	SNP	CRKRS	NM_016507	human	genbank	54_36p	+1	validated	missense	c.1958	p.P653L	0.997	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
KRTAP4-2	85291	genome.wustl.edu	36	17	36587840	36587840	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	17	36587840	36587840	A	T	SNP	KRTAP4-2	NM_033062	human	genbank	54_36p	-1	reviewed	missense	c.103	p.C35S	1.000	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
STRC	161497	genome.wustl.edu	36	15	41697135	41697135	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	15	41697135	41697135	G	A	SNP	STRC	NM_153700	human	genbank	54_36p	-1	reviewed	missense	c.776	p.T259I	0.992	NULL	NULL	-	no_errors
GABRA4	2557	genome.wustl.edu	36	4	46689650	46689650	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	4	46689650	46689650	C	G	SNP	GABRA4	NM_000809	human	genbank	54_36p	-1	reviewed	missense	c.157	p.D53H	1.000	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors
GPR116	221395	genome.wustl.edu	36	6	46932600	46932600	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	6	46932600	46932600	A	G	SNP	GPR116	NM_001098518	human	genbank	54_36p	-1	validated	missense	c.3779	p.L1260S	0.593	HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	PatternScan_EGF_2,superfamily_SEA domain,HMMPfam_SEA,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
KRT3	3850	genome.wustl.edu	36	12	51472766	51472766	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	12	51472766	51472766	T	C	SNP	KRT3	NM_057088	human	genbank	54_36p	-1	reviewed	missense	c.1019	p.D340G	0.981	HMMPfam_Filament,superfamily_Prefoldin	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
AMHR2	269	genome.wustl.edu	36	12	52104899	52104899	+	Silent	SNP	T	T	G	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	12	52104899	52104899	T	G	SNP	AMHR2	NM_020547	human	genbank	54_36p	+1	validated	silent	c.372	p.P124	0.993	superfamily_Snake toxin-like	superfamily_Snake toxin-like,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	-	no_errors
SMC1A	8243	genome.wustl.edu	36	X	53425886	53425886	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	X	53425886	53425886	G	T	SNP	SMC1A	NM_006306	human	genbank	54_36p	-1	reviewed	silent	c.3429	p.A1143	1.000	HMMPfam_SMC_N,superfamily_SSF52540	HMMPfam_SMC_N,superfamily_SSF52540,superfamily_SMC_hinge,HMMPfam_SMC_hinge	-	no_errors
TEAD2	8463	genome.wustl.edu	36	19	54552336	54552336	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	19	54552336	54552336	G	T	SNP	TEAD2	NM_003598	human	genbank	54_36p	-1	provisional	silent	c.345	p.I115	0.982	HMMPfam_TEA	HMMPfam_TEA,HMMSmart_TEA,PatternScan_TEA_1	-	no_errors
ENSG00000221007	0	genome.wustl.edu	36	20	55927495	55927495	+	RNA	SNP	T	C	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	20	55927495	55927495	T	C	SNP	ENSG00000221007	ENST00000408080	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.006	-	-	-	no_errors
FPR3	2359	genome.wustl.edu	36	19	57019744	57019744	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	19	57019744	57019744	G	A	SNP	FPR3	NM_002030	human	genbank	54_36p	+1	validated	missense	c.931	p.E311K	0.992	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DNAH12L	375347	genome.wustl.edu	36	3	57463097	57463097	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	3	57463097	57463097	C	G	SNP	DNAH12L	ENST00000311202	human	ensembl	54_36p	-1	known	missense	c.1236	p.E412D	0.839	NULL	NULL	-	no_errors
ANK3	288	genome.wustl.edu	36	10	61504072	61504072	+	Silent	SNP	A	A	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	10	61504072	61504072	A	T	SNP	ANK3	NM_020987	human	genbank	54_36p	-1	reviewed	silent	c.6573	p.P2191	0.012	NULL	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_ZU5,HMMSmart_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
SYNE2	23224	genome.wustl.edu	36	14	63526956	63526956	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	14	63526956	63526956	A	G	SNP	SYNE2	NM_182914	human	genbank	54_36p	+1	validated	silent	c.2388	p.Q796	0.012	NULL	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH	-	no_errors
ABCA5	23461	genome.wustl.edu	36	17	64762115	64762115	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	17	64762115	64762115	G	C	SNP	ABCA5	NM_018672	human	genbank	54_36p	-1	reviewed	missense	c.4180	p.H1394D	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
CD300LF	146722	genome.wustl.edu	36	17	70210871	70210871	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	17	70210871	70210871	G	A	SNP	CD300LF	ENST00000361254	human	ensembl	54_36p	-1	known	missense	c.398	p.T133I	0.006	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors
NODAL	4838	genome.wustl.edu	36	10	71865394	71865394	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	10	71865394	71865394	G	A	SNP	NODAL	NM_018055	human	genbank	54_36p	-1	reviewed	missense	c.545	p.P182L	0.000	NULL	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors
KLF5	688	genome.wustl.edu	36	13	72534136	72534136	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	13	72534136	72534136	G	T	SNP	KLF5	NM_001730	human	genbank	54_36p	+1	reviewed	missense	c.398	p.S133I	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
EXOC6B	23233	genome.wustl.edu	36	2	72822087	72822087	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	2	72822087	72822087	C	G	SNP	EXOC6B	NM_015189	human	genbank	54_36p	-1	validated	missense	c.133	p.E45Q	1.000	NULL	HMMPfam_Sec15	-	no_errors
DNAH17	8632	genome.wustl.edu	36	17	74008896	74008896	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	17	74008896	74008896	G	T	SNP	DNAH17	ENST00000300671	human	ensembl	54_36p	-1	known	missense	c.5433	p.N1811K	1.000	NULL	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy	-	no_errors
LOC643562	643562	genome.wustl.edu	36	6	80831775	80831775	+	RNA	SNP	A	A	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	6	80831775	80831775	A	C	SNP	LOC643562	XR_016539	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ADAMTSL3	57188	genome.wustl.edu	36	15	82443004	82443004	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	15	82443004	82443004	G	T	SNP	ADAMTSL3	NM_207517	human	genbank	54_36p	+1	validated	missense	c.3620	p.R1207M	0.004	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_PLAC	-	no_errors
MMRN2	79812	genome.wustl.edu	36	10	88693709	88693709	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	10	88693709	88693709	T	C	SNP	MMRN2	NM_024756	human	genbank	54_36p	-1	validated	missense	c.812	p.Q271R	0.001	NULL	HMMPfam_EMI,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	-	no_errors
COL15A1	1306	genome.wustl.edu	36	9	100818212	100818212	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	9	100818212	100818212	G	C	SNP	COL15A1	NM_001855	human	genbank	54_36p	+1	reviewed	missense	c.1637	p.W546S	0.001	NULL	superfamily_ConA_like_lec_gl,HMMSmart_TSPN,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_Collagen,superfamily_C-type_lectin_fold,HMMPfam_Endostatin	-	no_errors
C2orf29	55571	genome.wustl.edu	36	2	101247897	101247897	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	2	101247897	101247897	G	T	SNP	C2orf29	NM_017546	human	genbank	54_36p	+1	validated	missense	c.991	p.A331S	1.000	NULL	HMMPfam_DUF2363	-	no_errors
RELN	5649	genome.wustl.edu	36	7	103022067	103022067	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	7	103022067	103022067	G	C	SNP	RELN	NM_005045	human	genbank	54_36p	-1	reviewed	missense	c.3648	p.D1216E	1.000	NULL	HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase	-	no_errors
MLL5	55904	genome.wustl.edu	36	7	104534324	104534324	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	7	104534324	104534324	A	C	SNP	MLL5	NM_018682	human	genbank	54_36p	+1	reviewed	missense	c.2716	p.M906L	0.582	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain	-	no_errors
TCP11L2	255394	genome.wustl.edu	36	12	105229031	105229031	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	12	105229031	105229031	C	T	SNP	TCP11L2	NM_152772	human	genbank	54_36p	+1	provisional	silent	c.48	p.S16	0.991	NULL	HMMPfam_Tcp11	-	no_errors
RGPD4	285190	genome.wustl.edu	36	2	107844503	107844503	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	2	107844503	107844503	G	A	SNP	RGPD4	ENST00000354986	human	ensembl	54_36p	+1	known	missense	c.2080	p.D694N	1.000	NULL	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_PH domain-like,HMMSmart_SM00160,HMMPfam_Ran_BP1,HMMPfam_GRIP,HMMSmart_SM00755	-	no_errors
LOC100130892	0	genome.wustl.edu	36	7	107937991	107937991	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	7	107937991	107937991	C	A	SNP	LOC100130892	XM_001725978	human	genbank	54_36p	+1	model	missense	c.79	p.L27M	0.849	HMMPfam_Ribosomal_L30_N	HMMPfam_Ribosomal_L30_N,HMMPfam_Ribosomal_L30,superfamily_Ribosomal_L30,PatternScan_RIBOSOMAL_L30	-	pseudogene
SLC5A7	60482	genome.wustl.edu	36	2	107991523	107991523	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	2	107991523	107991523	A	C	SNP	SLC5A7	NM_021815	human	genbank	54_36p	+1	provisional	missense	c.1066	p.S356R	1.000	HMMPfam_SSF	PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2,HMMPfam_SSF	-	no_errors
ACSL4	2182	genome.wustl.edu	36	X	108789327	108789327	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	X	108789327	108789327	T	C	SNP	ACSL4	NM_022977	human	genbank	54_36p	-1	reviewed	silent	c.1890	p.K630	0.992	superfamily_Acetyl-CoA synthetase-like	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
MCF2L	23263	genome.wustl.edu	36	13	112786348	112786348	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	13	112786348	112786348	G	A	SNP	MCF2L	NM_024979	human	genbank	54_36p	+1	validated	missense	c.2021	p.C674Y	1.000	superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF	HMMSmart_SEC14,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
KIAA1210	57481	genome.wustl.edu	36	X	118104727	118104727	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	X	118104727	118104727	G	A	SNP	KIAA1210	NM_020721	human	genbank	54_36p	-1	validated	silent	c.4494	p.T1498	0.000	NULL	NULL	-	no_errors
WDYHV1	55093	genome.wustl.edu	36	8	124509357	124509357	+	Silent	SNP	T	T	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	8	124509357	124509357	T	A	SNP	WDYHV1	NM_018024	human	genbank	54_36p	+1	provisional	silent	c.96	p.I32	0.995	HMMPfam_WDYHV	HMMPfam_WDYHV	-	no_errors
LOC646547	646547	genome.wustl.edu	36	3	137938024	137938024	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	3	137938024	137938024	G	A	SNP	LOC646547	XR_017127	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.966	-	-	-	pseudogene
MCF2	4168	genome.wustl.edu	36	X	138561599	138561599	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	X	138561599	138561599	G	A	SNP	MCF2	ENST00000370578	human	ensembl	54_36p	-1	known	missense	c.226	p.L76F	0.015	NULL	HMMSmart_SEC14,superfamily_Spectrin,HMMSmart_SPEC,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
HIPK2	28996	genome.wustl.edu	36	7	138966966	138966966	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	7	138966966	138966966	G	T	SNP	HIPK2	ENST00000263551	human	ensembl	54_36p	-1	known	missense	c.1149	p.D383E	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_start_codon
EPM2A	7957	genome.wustl.edu	36	6	145998104	145998104	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	6	145998104	145998104	A	C	SNP	EPM2A	NM_005670	human	genbank	54_36p	-1	reviewed	missense	c.688	p.W230G	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00195,HMMPfam_DSPc	superfamily_Starch-binding domain-like,HMMPfam_CBM_20,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00195,HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
FCGR1A	2209	genome.wustl.edu	36	1	148029542	148029542	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	1	148029542	148029542	G	C	SNP	FCGR1A	NM_000566	human	genbank	54_36p	+1	reviewed	missense	c.970	p.D324H	0.532	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
PGLYRP3	114771	genome.wustl.edu	36	1	151549722	151549722	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	1	151549722	151549722	A	G	SNP	PGLYRP3	NM_052891	human	genbank	54_36p	-1	provisional	missense	c.44	p.L15P	0.000	NULL	superfamily_Amidase_2,HMMSmart_PGRP,HMMPfam_Amidase_2,HMMSmart_Ami_2	-	no_errors
CLRN1	7401	genome.wustl.edu	36	3	152172983	152172983	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	3	152172983	152172983	C	T	SNP	CLRN1	NM_174878	human	genbank	54_36p	-1	reviewed	missense	c.203	p.G68E	1.000	NULL	NULL	-	no_errors
MARCH1	55016	genome.wustl.edu	36	4	164753915	164753915	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	4	164753915	164753915	C	T	SNP	MARCH1	NM_017923	human	genbank	54_36p	-1	validated	splice_site	c.191+1	e1+1	1.000	-	-	-	no_errors
SLC2A2	6514	genome.wustl.edu	36	3	172198573	172198573	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	3	172198573	172198573	G	A	SNP	SLC2A2	NM_000340	human	genbank	54_36p	-1	reviewed	missense	c.1388	p.P463L	0.920	superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr	superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179351943	179351943	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	2	179351943	179351943	C	T	SNP	TTN	NM_133379	human	genbank	54_36p	-1	reviewed	missense	c.4111	p.G1371R	1.000	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_Titin_Z,HMMPfam_ig,PatternScan_IG_MHC,PatternScan_THIOL_PROTEASE_HIS	-	no_errors
LOC645978	645978	genome.wustl.edu	36	2	206983462	206983462	+	RNA	SNP	G	G	C	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	2	206983462	206983462	G	C	SNP	LOC645978	XR_017572	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
CNR2	1269	genome.wustl.edu	36	1	24074083	24074106	+	In_Frame_Del	DEL	TCCGGAAAAGAGGAAGGCGATGAA	TCCGGAAAAGAGGAAGGCGATGAA	-	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	TCCGGAAAAGAGGAAGGCGATGAA	TCCGGAAAAGAGGAAGGCGATGAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	1	24074083	24074106	TCCGGAAAAGAGGAAGGCGATGAA	-	DEL	CNR2	NM_001841	human	genbank	54_36p	-1	reviewed	in_frame_del	c.612_589	p.FIAFLFSG197in_frame_del	0.992:0.966:0.900:0.001:0.000:0.000:0.011:0.982:0.987:0.995:1.000:1.000:0.698:0.614:0.215:0.040:0.007:0.001:0.001:0.322:0.319:0.321:0.366:0.163	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	(deletion:cds_exon[24073612,24074694])	no_errors
RRP7A	27341	genome.wustl.edu	36	22	41240629	41240630	+	Splice_Site	INS	-	-	A	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	22	41240629	41240630	-	A	INS	RRP7A	NM_015703	human	genbank	54_36p	-1	provisional	splice_site_ins	c.558+2_558+1	e5+2	0.024:0.975	-	-	-	no_errors
GPR116	221395	genome.wustl.edu	36	6	46938594	46938610	+	Frame_Shift_Del	DEL	TGGAGCAGACTGTTTAT	TGGAGCAGACTGTTTAT	-	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	TGGAGCAGACTGTTTAT	TGGAGCAGACTGTTTAT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	6	46938594	46938610	TGGAGCAGACTGTTTAT	-	DEL	GPR116	NM_001098518	human	genbank	54_36p	-1	validated	frame_shift_del	c.2189_2173	p.I725fs	0.030:0.116:0.702:0.984:1.000:1.000:0.998:0.978:0.919:0.815:0.780:0.769:0.860:0.881:0.883:0.936:0.934	NULL	PatternScan_EGF_2,superfamily_SEA domain,HMMPfam_SEA,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	(deletion:cds_exon[46938584,46938792])	no_errors
WNK3	65267	genome.wustl.edu	36	X	54376530	54376561	+	Frame_Shift_Del	DEL	CCACCTCTCAACACATTTGAAGGAAGCTTATC	CCACCTCTCAACACATTTGAAGGAAGCTTATC	-	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	CCACCTCTCAACACATTTGAAGGAAGCTTATC	CCACCTCTCAACACATTTGAAGGAAGCTTATC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	X	54376530	54376561	CCACCTCTCAACACATTTGAAGGAAGCTTATC	-	DEL	WNK3	NM_020922	human	genbank	54_36p	-1	validated	frame_shift_del	c.302_271	p.D91fs	0.998:0.997:0.952:0.951:0.885:0.563:0.258:0.168:0.139:0.641:0.641:0.635:0.777:0.941:0.966:0.987:0.994:0.993:0.988:0.873:0.850:0.889:0.880:0.872:0.827:0.750:0.746:0.762:0.780:0.820:0.978:0.991	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[54376295,54376831])	no_errors
KDR	3791	genome.wustl.edu	36	4	55655844	55655846	+	In_Frame_Del	DEL	GTA	GTA	-	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	GTA	GTA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	4	55655844	55655846	GTA	-	DEL	KDR	NM_002253	human	genbank	54_36p	-1	validated	in_frame_del	c.2853_2851	p.Y951in_frame_del	0.522:0.984:0.993	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	(deletion:cds_exon[55655726,55655879])	no_errors
GNRHR	2798	genome.wustl.edu	36	4	68302362	68302386	+	Frame_Shift_Del	DEL	GGCATGACAATCAGAGTCTCCAACA	GGCATGACAATCAGAGTCTCCAACA	-	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	GGCATGACAATCAGAGTCTCCAACA	GGCATGACAATCAGAGTCTCCAACA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	4	68302362	68302386	GGCATGACAATCAGAGTCTCCAACA	-	DEL	GNRHR	NM_000406	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.287_263	p.L88fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.994:1.000:1.000:0.999:1.000:0.992:0.985:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.959:0.961:1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[68302127,68302648])	no_errors
COL13A1	1305	genome.wustl.edu	36	10	71232305	71232325	+	In_Frame_Del	DEL	GAGTCCAGGGTCGTGCGGGCT	GAGTCCAGGGTCGTGCGGGCT	-	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	GAGTCCAGGGTCGTGCGGGCT	GAGTCCAGGGTCGTGCGGGCT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	10	71232305	71232325	GAGTCCAGGGTCGTGCGGGCT	-	DEL	COL13A1	NM_005203	human	genbank	54_36p	+1	reviewed	in_frame_del	c.120_140	p.SPGSCGL41in_frame_del	0.049:0.042:0.029:0.007:0.008:0.011:0.018:0.117:0.303:0.425:0.432:0.467:0.530:0.941:0.965:0.979:0.996:0.999:1.000:1.000:1.000	NULL	HMMPfam_Collagen	(deletion:cds_exon[71232186,71232479])	no_errors
DLG5	9231	genome.wustl.edu	36	10	79251196	79251235	+	Frame_Shift_Del	DEL	TTCTGGGAGGTTTTGGGGGTGTCAGAGGCCCCGCCCTCTT	TTCTGGGAGGTTTTGGGGGTGTCAGAGGCCCCGCCCTCTT	-	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	TTCTGGGAGGTTTTGGGGGTGTCAGAGGCCCCGCCCTCTT	TTCTGGGAGGTTTTGGGGGTGTCAGAGGCCCCGCCCTCTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	10	79251196	79251235	TTCTGGGAGGTTTTGGGGGTGTCAGAGGCCCCGCCCTCTT	-	DEL	DLG5	NM_004747	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.3052_3013	p.K1005fs	1.000:0.995:1.000:1.000:1.000:1.000:1.000:0.991:1.000:1.000:0.989:0.997:0.997:0.957:1.000:1.000:0.998:1.000:1.000:0.452:0.997:0.997:0.976:0.982:0.963:0.453:0.462:0.313:0.273:0.524:0.856:0.389:0.264:0.270:0.175:0.399:0.485:0.512:0.542:0.548	NULL	superfamily_DEATH domain,HMMPfam_CARD,HMMPfam_DUF622,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,PatternScan_RCC1_2,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C	(deletion:cds_exon[79250846,79251865])	no_errors
FAM129B	64855	genome.wustl.edu	36	9	129309387	129309392	+	In_Frame_Del	DEL	CCGCCC	CCGCCC	-	novel	unknown	TCGA-29-1711-01A-01W-0633-09	TCGA-29-1711-10A-01W-0633-09	CCGCCC	CCGCCC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	39ddd936-df31-4268-9b57-3e0fac1bc69b	72feb979-d793-4e9d-acd7-4b315ef6f80c	9	129309387	129309392	CCGCCC	-	DEL	FAM129B	NM_022833	human	genbank	54_36p	-1	validated	in_frame_del	c.1799_1794	p.GG599in_frame_del	0.004:0.000:0.000:0.000:0.001:0.000	NULL	superfamily_SSF50729,HMMSmart_PH	(deletion:cds_exon[129308945,129309531])	no_errors
