Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ND5	4540	genome.wustl.edu	36	MT	13559	13559	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	MT	13559	13559	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	missense	c.1222	p.A408T	NULL	NULL	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
DEFB129	140881	genome.wustl.edu	36	20	158326	158326	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	20	158326	158326	G	T	SNP	DEFB129	NM_080831	human	genbank	54_36p	+1	validated	missense	c.466	p.A156S	0.000	NULL	NULL	-	no_errors
C20orf194	25943	genome.wustl.edu	36	20	3246935	3246935	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	20	3246935	3246935	C	A	SNP	C20orf194	NM_001009984	human	genbank	54_36p	-1	validated	splice_site	c.1468+1	e17+1	0.998	-	-	-	no_errors
RASSF2	9770	genome.wustl.edu	36	20	4716359	4716359	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	20	4716359	4716359	G	A	SNP	RASSF2	NM_014737	human	genbank	54_36p	-1	reviewed	nonsense	c.733	p.R245*	1.000	HMMSmart_RA,HMMPfam_RA	HMMSmart_RA,HMMPfam_RA	-	no_errors
SAFB2	9667	genome.wustl.edu	36	19	5562182	5562182	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	19	5562182	5562182	G	C	SNP	SAFB2	NM_014649	human	genbank	54_36p	-1	validated	missense	c.1094	p.P365R	1.000	NULL	superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
OR52N1	79473	genome.wustl.edu	36	11	5766602	5766602	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	5766602	5766602	G	A	SNP	OR52N1	NM_001001913	human	genbank	54_36p	-1	provisional	silent	c.21	p.T7	0.000	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
CAPS	828	genome.wustl.edu	36	19	5865436	5865436	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	19	5865436	5865436	A	G	SNP	CAPS	NM_004058	human	genbank	54_36p	+1	validated	missense	c.19	p.T7A	0.362	NULL	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
VWF	7450	genome.wustl.edu	36	12	5965036	5965036	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	12	5965036	5965036	G	A	SNP	VWF	NM_000552	human	genbank	54_36p	-1	reviewed	silent	c.6855	p.S2285	0.652	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_VWC,PatternScan_VWFC_1,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors
CRLS1	54675	genome.wustl.edu	36	20	5965787	5965787	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	20	5965787	5965787	C	T	SNP	CRLS1	NM_019095	human	genbank	54_36p	+1	validated	nonsense	c.889	p.Q297*	1.000	NULL	PatternScan_CDP_ALCOHOL_P_TRANSF,HMMPfam_CDP-OH_P_transf	-	no_errors
POLR2A	5430	genome.wustl.edu	36	17	7356920	7356920	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	17	7356920	7356920	C	G	SNP	POLR2A	NM_000937	human	genbank	54_36p	+1	provisional	silent	c.4710	p.G1570	1.000	NULL	superfamily_SSF64484,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_2,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_4,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_6,HMMPfam_RNA_pol_Rpb1_7,HMMPfam_RNA_pol_Rpb1_R,PatternScan_RNA_POL_II_REPEAT	-	no_errors
UTS2	10911	genome.wustl.edu	36	1	7833486	7833486	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	7833486	7833486	C	G	SNP	UTS2	NM_021995	human	genbank	54_36p	-1	reviewed	missense	c.232	p.E78Q	0.001	NULL	HMMPfam_Urotensin_II,PatternScan_UROTENSIN_II	-	no_errors
ACOX3	8310	genome.wustl.edu	36	4	8458585	8458585	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	4	8458585	8458585	T	A	SNP	ACOX3	NM_003501	human	genbank	54_36p	-1	validated	missense	c.773	p.N258I	1.000	superfamily_Acyl-CoA dehydrogenase NM domain-like	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_M,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,HMMPfam_ACOX	-	no_errors
COL5A3	50509	genome.wustl.edu	36	19	9960829	9960829	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	19	9960829	9960829	G	T	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	missense	c.2116	p.P706T	0.087	NULL	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
uc010dwx.1	0	genome.wustl.edu	36	19	10024254	10024254	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	19	10024254	10024254	A	G	SNP	uc010dwx.1	ENST00000333905	human	ensembl	54_36p	+1	known	silent	c.468	p.V156	0.299	NULL	HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp	-	no_errors
TYK2	7297	genome.wustl.edu	36	19	10325312	10325312	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	19	10325312	10325312	C	T	SNP	TYK2	NM_003331	human	genbank	54_36p	-1	reviewed	silent	c.2919	p.S973	0.878	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550,HMMSmart_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
MYH1	4619	genome.wustl.edu	36	17	10356722	10356722	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	17	10356722	10356722	C	T	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	splice_site	c.1008+1	e9+1	1.000	-	-	-	no_errors
CTR9	9646	genome.wustl.edu	36	11	10752177	10752177	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	10752177	10752177	G	T	SNP	CTR9	NM_014633	human	genbank	54_36p	+1	provisional	missense	c.2770	p.D924Y	1.000	NULL	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	-	no_errors
GNAL	2774	genome.wustl.edu	36	18	11743861	11743861	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	18	11743861	11743861	G	T	SNP	GNAL	NM_182978	human	genbank	54_36p	+1	validated	missense	c.541	p.V181F	1.000	HMMPfam_G-alpha,superfamily_SSF52540,superfamily_Transducn_insert	HMMPfam_G-alpha,superfamily_SSF52540,superfamily_Transducn_insert	-	no_errors
PRDM2	7799	genome.wustl.edu	36	1	13979649	13979649	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	13979649	13979649	T	A	SNP	PRDM2	NM_012231	human	genbank	54_36p	+1	reviewed	missense	c.2772	p.D924E	0.015	NULL	superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
BFAR	51283	genome.wustl.edu	36	16	14645797	14645797	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	16	14645797	14645797	A	G	SNP	BFAR	NM_016561	human	genbank	54_36p	+1	provisional	silent	c.93	p.E31	0.994	superfamily_RING/U-box	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
ENSG00000176923	0	genome.wustl.edu	36	19	14899059	14899059	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	19	14899059	14899059	A	C	SNP	ENSG00000176923	ENST00000321415	human	ensembl	54_36p	+1	known	missense	c.37	p.I13L	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
MRGPRX2	117194	genome.wustl.edu	36	11	19034300	19034300	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	19034300	19034300	A	C	SNP	MRGPRX2	NM_054030	human	genbank	54_36p	-1	provisional	missense	c.226	p.F76V	0.988	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR4K2	390431	genome.wustl.edu	36	14	19414346	19414346	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	14	19414346	19414346	T	C	SNP	OR4K2	NM_001005501	human	genbank	54_36p	+1	provisional	missense	c.80	p.F27S	0.060	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC642131	0	genome.wustl.edu	36	15	19974311	19974311	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	15	19974311	19974311	C	T	SNP	LOC642131	XM_001716834	human	genbank	54_36p	-1	model	silent	c.345	p.A115	0.541	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	-	no_errors
MATN3	4148	genome.wustl.edu	36	2	20069531	20069531	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	20069531	20069531	A	C	SNP	MATN3	NM_002381	human	genbank	54_36p	-1	reviewed	missense	c.245	p.L82W	0.994	superfamily_vWA-like,HMMSmart_SM00327	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,HMMPfam_Matrilin_ccoil	-	no_errors
PUM2	23369	genome.wustl.edu	36	2	20354013	20354013	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	20354013	20354013	C	G	SNP	PUM2	NM_015317	human	genbank	54_36p	-1	provisional	missense	c.1172	p.G391A	1.000	NULL	superfamily_ARM repeat,HMMPfam_PUF,HMMSmart_SM00025	-	no_errors
APOB	338	genome.wustl.edu	36	2	21086591	21086591	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	21086591	21086591	G	A	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	silent	c.6654	p.I2218	0.294	NULL	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081	-	no_errors
ZP2	7783	genome.wustl.edu	36	16	21120977	21120977	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	16	21120977	21120977	C	A	SNP	ZP2	NM_003460	human	genbank	54_36p	-1	reviewed	missense	c.1236	p.Q412H	0.001	HMMPfam_Zona_pellucida,HMMSmart_SM00241	HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1	-	no_errors
uc001wct.2	0	genome.wustl.edu	36	14	21541489	21541489	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	14	21541489	21541489	C	A	SNP	uc001wct.2	ENST00000390446	human	ensembl	54_36p	+1	known	silent	c.72	p.T24	1.000	HMMPfam_V-set,superfamily_SSF48726	HMMPfam_V-set,superfamily_SSF48726	-	no_stop_codon
CD93	22918	genome.wustl.edu	36	20	23013155	23013155	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	20	23013155	23013155	G	T	SNP	CD93	NM_012072	human	genbank	54_36p	-1	reviewed	missense	c.1675	p.Q559K	0.000	NULL	PatternScan_C_TYPE_LECTIN_1,HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMPfam_Lectin_C,HMMSmart_EGF,superfamily_SSF57196,PatternScan_EGF_2,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors
GPNMB	10457	genome.wustl.edu	36	7	23276219	23276219	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	7	23276219	23276219	A	G	SNP	GPNMB	NM_001005340	human	genbank	54_36p	+1	reviewed	silent	c.1365	p.R455	0.963	NULL	superfamily_PKD domain,HMMSmart_SM00089,HMMPfam_PKD	-	no_errors
PRDM9	56979	genome.wustl.edu	36	5	23557015	23557015	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	5	23557015	23557015	A	T	SNP	PRDM9	NM_020227	human	genbank	54_36p	+1	provisional	missense	c.478	p.T160S	0.000	NULL	superfamily_Krueppel-associated_box,HMMSmart_KRAB,HMMPfam_KRAB,HMMPfam_SSXRD,superfamily_SSF82199,HMMSmart_SET,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667,HMMPfam_zf-C2H2	-	no_errors
ADAM28	10863	genome.wustl.edu	36	8	24264762	24264762	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	8	24264762	24264762	C	A	SNP	ADAM28	NM_014265	human	genbank	54_36p	+1	reviewed	silent	c.2172	p.P724	0.349	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,PatternScan_EGF_2"	-	no_errors
CCDC149	91050	genome.wustl.edu	36	4	24448885	24448885	+	Silent	SNP	A	A	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	4	24448885	24448885	A	C	SNP	CCDC149	NM_173463	human	genbank	54_36p	-1	validated	silent	c.315	p.A105	0.141	HMMPfam_DUF2353	HMMPfam_DUF2353	-	no_errors
NOVA1	4857	genome.wustl.edu	36	14	25987702	25987702	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	14	25987702	25987702	G	T	SNP	NOVA1	NM_002515	human	genbank	54_36p	-1	reviewed	missense	c.827	p.A276D	1.000	NULL	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1	-	no_errors
APBB1IP	54518	genome.wustl.edu	36	10	26862429	26862429	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	10	26862429	26862429	T	C	SNP	APBB1IP	NM_019043	human	genbank	54_36p	+1	validated	missense	c.869	p.M290T	1.000	NULL	HMMPfam_RA,HMMSmart_RA,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
DSC1	1823	genome.wustl.edu	36	18	26968537	26968537	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	18	26968537	26968537	C	A	SNP	DSC1	NM_024421	human	genbank	54_36p	-1	reviewed	missense	c.1872	p.K624N	0.015	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMPfam_Cadherin_pro,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors
LOC400347	400347	genome.wustl.edu	36	15	29533604	29533604	+	RNA	SNP	C	G	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	15	29533604	29533604	C	G	SNP	LOC400347	XR_016518	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.864	-	-	-	pseudogene
ASXL3	80816	genome.wustl.edu	36	18	29577116	29577116	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	18	29577116	29577116	C	G	SNP	ASXL3	NM_030632	human	genbank	54_36p	+1	validated	missense	c.3306	p.I1102M	1.000	NULL	NULL	-	no_errors
EHD3	30845	genome.wustl.edu	36	2	31342859	31342859	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	31342859	31342859	G	C	SNP	EHD3	NM_014600	human	genbank	54_36p	+1	provisional	missense	c.1393	p.A465P	0.999	superfamily_EF-hand,HMMSmart_SM00027	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1	-	no_errors
RYR3	6263	genome.wustl.edu	36	15	31629674	31629674	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	15	31629674	31629674	A	T	SNP	RYR3	NM_001036	human	genbank	54_36p	+1	validated	missense	c.837	p.R279S	0.995	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
ZBTB12	221527	genome.wustl.edu	36	6	31976765	31976765	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	6	31976765	31976765	G	C	SNP	ZBTB12	NM_181842	human	genbank	54_36p	-1	validated	missense	c.297	p.D99E	0.988	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
HERC2P4	440362	genome.wustl.edu	36	16	32070781	32070781	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	16	32070781	32070781	C	T	SNP	HERC2P4	NR_002827	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.050	-	-	-	pseudogene
ANXA2P2	0	genome.wustl.edu	36	9	33614424	33614424	+	RNA	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	9	33614424	33614424	G	T	SNP	ANXA2P2	NR_003573	human	genbank	54_36p	+1	validated	rna	NULL	NULL	0.998	-	-	-	pseudogene
DSN1	79980	genome.wustl.edu	36	20	34824299	34824299	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	20	34824299	34824299	T	A	SNP	DSN1	NM_024918	human	genbank	54_36p	-1	reviewed	missense	c.569	p.K190I	1.000	HMMPfam_Mis12_component	HMMPfam_Mis12_component	-	no_errors
LBA1	9881	genome.wustl.edu	36	3	36849176	36849176	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	3	36849176	36849176	C	G	SNP	LBA1	NM_014831	human	genbank	54_36p	-1	validated	missense	c.5120	p.R1707P	0.016	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TTC6	115669	genome.wustl.edu	36	14	37381243	37381243	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	14	37381243	37381243	T	C	SNP	TTC6	ENST00000382320	human	ensembl	54_36p	+1	known	missense	c.1850	p.I617T	0.000	NULL	superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1	-	no_errors
CCR10	2826	genome.wustl.edu	36	17	38086141	38086141	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	17	38086141	38086141	A	G	SNP	CCR10	NM_016602	human	genbank	54_36p	-1	validated	silent	c.45	p.S15	0.004	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
TEF	7008	genome.wustl.edu	36	22	40121794	40121794	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	22	40121794	40121794	G	C	SNP	TEF	NM_003216	human	genbank	54_36p	+1	reviewed	missense	c.796	p.A266P	0.991	HMMSmart_SM00338,HMMPfam_bZIP_2	HMMSmart_SM00338,HMMPfam_bZIP_2	-	no_errors
PDZRN4	29951	genome.wustl.edu	36	12	40252991	40252991	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	12	40252991	40252991	G	C	SNP	PDZRN4	NM_013377	human	genbank	54_36p	+1	validated	missense	c.1369	p.D457H	0.008	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	-	no_errors
XRCC6	2547	genome.wustl.edu	36	22	40372977	40372977	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	22	40372977	40372977	C	T	SNP	XRCC6	NM_001469	human	genbank	54_36p	+1	reviewed	missense	c.905	p.T302I	0.979	superfamily_SPOC-like,HMMPfam_Ku	superfamily_SSF53300,HMMPfam_Ku_N,superfamily_SPOC-like,HMMPfam_Ku,HMMSmart_Ku78,HMMPfam_Ku_C,superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP	-	no_errors
SLC14A2	8170	genome.wustl.edu	36	18	41503420	41503420	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	18	41503420	41503420	G	A	SNP	SLC14A2	NM_007163	human	genbank	54_36p	+1	validated	missense	c.2188	p.A730T	0.002	HMMPfam_UT	HMMPfam_UT,PatternScan_MULTICOPPER_OXIDASE1	-	no_errors
KIAA1267	284058	genome.wustl.edu	36	17	41527855	41527855	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	17	41527855	41527855	G	C	SNP	KIAA1267	NM_015443	human	genbank	54_36p	-1	validated	missense	c.1319	p.A440G	1.000	NULL	NULL	-	no_errors
ANK1	286	genome.wustl.edu	36	8	41734793	41734793	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	8	41734793	41734793	A	T	SNP	ANK1	NM_020476	human	genbank	54_36p	-1	reviewed	missense	c.47	p.F16Y	1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_ZU5,HMMSmart_SM00218,HMMSmart_SM00005,superfamily_DEATH domain,HMMPfam_Death	-	no_errors
CDC20	991	genome.wustl.edu	36	1	43598078	43598078	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	43598078	43598078	G	C	SNP	CDC20	NM_001255	human	genbank	54_36p	+1	reviewed	missense	c.426	p.E142D	1.000	superfamily_WD40_like	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
MAP4K1	11184	genome.wustl.edu	36	19	43778138	43778138	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	19	43778138	43778138	C	T	SNP	MAP4K1	NM_007181	human	genbank	54_36p	-1	validated	missense	c.2251	p.E751K	0.060	HMMSmart_CNH,HMMPfam_CNH	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,HMMSmart_CNH,HMMPfam_CNH	-	no_errors
AEBP1	165	genome.wustl.edu	36	7	44119828	44119828	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	7	44119828	44119828	G	A	SNP	AEBP1	NM_001129	human	genbank	54_36p	+1	reviewed	missense	c.2920	p.G974R	0.960	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain	superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Carboxypeptidase regulatory domain	-	no_errors
PRDM11	56981	genome.wustl.edu	36	11	45202719	45202719	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	45202719	45202719	A	T	SNP	PRDM11	NM_020229	human	genbank	54_36p	+1	validated	missense	c.1220	p.K407M	0.997	NULL	NULL	-	no_errors
XYLT2	64132	genome.wustl.edu	36	17	45789130	45789130	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	17	45789130	45789130	G	C	SNP	XYLT2	NM_022167	human	genbank	54_36p	+1	reviewed	missense	c.1742	p.C581S	1.000	NULL	HMMPfam_Branch	-	no_errors
RAB4B	53916	genome.wustl.edu	36	19	45981798	45981798	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	19	45981798	45981798	C	T	SNP	RAB4B	NM_016154	human	genbank	54_36p	+1	validated	silent	c.408	p.A136	0.989	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors
CACNA1G	8913	genome.wustl.edu	36	17	46058920	46058920	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	17	46058920	46058920	C	G	SNP	CACNA1G	NM_018896	human	genbank	54_36p	+1	validated	missense	c.6943	p.P2315A	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
ZNF574	64763	genome.wustl.edu	36	19	47276075	47276075	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	19	47276075	47276075	C	G	SNP	ZNF574	NM_022752	human	genbank	54_36p	+1	validated	missense	c.1477	p.R493G	1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
C12orf41	54934	genome.wustl.edu	36	12	47359141	47359141	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	12	47359141	47359141	C	G	SNP	C12orf41	NM_017822	human	genbank	54_36p	-1	validated	missense	c.490	p.G164R	1.000	NULL	NULL	-	no_errors
ABCA13	154664	genome.wustl.edu	36	7	48283939	48283939	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	7	48283939	48283939	C	T	SNP	ABCA13	NM_152701	human	genbank	54_36p	+1	reviewed	missense	c.3967	p.R1323C	0.009	NULL	PatternScan_SERPIN	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
RARG	5916	genome.wustl.edu	36	12	51893628	51893628	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	12	51893628	51893628	C	G	SNP	RARG	NM_000966	human	genbank	54_36p	-1	validated	missense	c.937	p.A313P	1.000	superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00399,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
ORC1L	4998	genome.wustl.edu	36	1	52611496	52611496	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	52611496	52611496	C	T	SNP	ORC1L	NM_004153	human	genbank	54_36p	-1	reviewed	missense	c.2531	p.R844Q	0.989	superfamily_SSF46785,HMMPfam_Cdc6_C	HMMPfam_BAH,HMMSmart_BAH,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF46785,HMMPfam_Cdc6_C	-	no_errors
SMC1A	8243	genome.wustl.edu	36	X	53448759	53448759	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	X	53448759	53448759	C	G	SNP	SMC1A	NM_006306	human	genbank	54_36p	-1	reviewed	missense	c.2106	p.Q702H	1.000	HMMPfam_SMC_N,superfamily_SSF52540	HMMPfam_SMC_N,superfamily_SSF52540,superfamily_SMC_hinge,HMMPfam_SMC_hinge	-	no_errors
MKS1	54903	genome.wustl.edu	36	17	53645437	53645437	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	17	53645437	53645437	C	T	SNP	MKS1	NM_017777	human	genbank	54_36p	-1	validated	missense	c.763	p.G255R	1.000	NULL	HMMPfam_B9	-	no_errors
ALPK2	115701	genome.wustl.edu	36	18	54397739	54397739	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	18	54397739	54397739	C	A	SNP	ALPK2	NM_052947	human	genbank	54_36p	-1	validated	missense	c.1249	p.V417F	0.257	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00811,HMMPfam_Alpha_kinase	-	no_errors
SPTBN1	6711	genome.wustl.edu	36	2	54639478	54639478	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	54639478	54639478	A	C	SNP	SPTBN1	NM_178313	human	genbank	54_36p	+1	reviewed	missense	c.59	p.Q20P	0.997	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150	-	no_errors
ZNF473	25888	genome.wustl.edu	36	19	55240008	55240008	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	19	55240008	55240008	G	A	SNP	ZNF473	NM_001006656	human	genbank	54_36p	+1	validated	missense	c.496	p.E166K	0.131	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
OR5D16	390144	genome.wustl.edu	36	11	55362950	55362950	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	55362950	55362950	G	A	SNP	OR5D16	NM_001005496	human	genbank	54_36p	+1	provisional	silent	c.147	p.V49	0.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
SPRYD5	84767	genome.wustl.edu	36	11	55412165	55412165	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	55412165	55412165	C	T	SNP	SPRYD5	NM_032681	human	genbank	54_36p	+1	validated	missense	c.112	p.H38Y	0.000	NULL	HMMPfam_SPRY	-	no_errors
OR7E5P	0	genome.wustl.edu	36	11	55503897	55503897	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	55503897	55503897	G	T	SNP	OR7E5P	ENST00000399170	human	ensembl	54_36p	-1	known	missense	c.136	p.P46T	0.782	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
GPR32	2854	genome.wustl.edu	36	19	55966194	55966194	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	19	55966194	55966194	G	A	SNP	GPR32	NM_001506	human	genbank	54_36p	+1	provisional	silent	c.525	p.A175	0.012	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC642975	642975	genome.wustl.edu	36	11	56214765	56214765	+	RNA	SNP	T	T	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	56214765	56214765	T	A	SNP	LOC642975	XR_016156	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
OR5AK3P	0	genome.wustl.edu	36	11	56495488	56495488	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	56495488	56495488	C	A	SNP	OR5AK3P	ENST00000326876	human	ensembl	54_36p	+1	known	missense	c.388	p.L130I	0.941	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
ZNF610	162963	genome.wustl.edu	36	19	57561780	57561780	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	19	57561780	57561780	A	G	SNP	ZNF610	NM_173530	human	genbank	54_36p	+1	provisional	missense	c.1337	p.H446R	0.810	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PSMA3	5684	genome.wustl.edu	36	14	57781406	57781406	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	14	57781406	57781406	C	G	SNP	PSMA3	NM_002788	human	genbank	54_36p	+1	reviewed	silent	c.15	p.G5	0.994	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome_A_N,PatternScan_PROTEASOME_A,HMMPfam_Proteasome	-	no_errors
PLK2	10769	genome.wustl.edu	36	5	57790335	57790335	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	5	57790335	57790335	T	C	SNP	PLK2	NM_006622	human	genbank	54_36p	-1	validated	missense	c.469	p.I157V	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SSF82615,HMMPfam_POLO_box	-	no_errors
OR5B2	390190	genome.wustl.edu	36	11	57946805	57946805	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	57946805	57946805	G	A	SNP	OR5B2	NM_001005566	human	genbank	54_36p	-1	provisional	missense	c.506	p.S169F	0.789	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR4D9	390199	genome.wustl.edu	36	11	59039072	59039072	+	Silent	SNP	A	A	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	59039072	59039072	A	T	SNP	OR4D9	NM_001004711	human	genbank	54_36p	+1	provisional	silent	c.111	p.T37	0.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC643680	643680	genome.wustl.edu	36	11	59749038	59749038	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	59749038	59749038	C	T	SNP	LOC643680	XM_931901	human	genbank	54_36p	-1	model	silent	c.210	p.A70	0.001	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
TLN2	83660	genome.wustl.edu	36	15	60816457	60816457	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	15	60816457	60816457	C	T	SNP	TLN2	NM_015059	human	genbank	54_36p	+1	reviewed	silent	c.3447	p.A1149	0.302	NULL	PatternScan_FERM_1,HMMSmart_B41,HMMPfam_FERM_N,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_Talin_cent,HMMPfam_Talin_middle,superfamily_SSF109885,HMMPfam_VBS,HMMSmart_ILWEQ,HMMPfam_I_LWEQ	-	no_errors
FAM161A	84140	genome.wustl.edu	36	2	61920929	61920929	+	Silent	SNP	T	T	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	61920929	61920929	T	A	SNP	FAM161A	NM_032180	human	genbank	54_36p	-1	validated	silent	c.387	p.V129	0.990	HMMPfam_UPF0564	HMMPfam_UPF0564	-	no_errors
STIP1	10963	genome.wustl.edu	36	11	63726934	63726934	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	63726934	63726934	A	T	SNP	STIP1	NM_006819	human	genbank	54_36p	+1	validated	missense	c.1256	p.E419V	1.000	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452,HMMSmart_STI1	-	no_errors
TMCO7	79613	genome.wustl.edu	36	16	67451862	67451862	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	16	67451862	67451862	C	T	SNP	TMCO7	NM_024562	human	genbank	54_36p	+1	validated	silent	c.669	p.I223	0.826	NULL	superfamily_ARM repeat,HMMPfam_DUF2435,HMMPfam_HEAT,HMMPfam_DUF2411	-	no_errors
HYDIN	54768	genome.wustl.edu	36	16	69623136	69623136	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	16	69623136	69623136	A	G	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	silent	c.2715	p.T905	1.000	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
UGT2B4	7363	genome.wustl.edu	36	4	70381036	70381036	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	4	70381036	70381036	G	A	SNP	UGT2B4	NM_021139	human	genbank	54_36p	-1	validated	silent	c.1492	p.L498	0.881	HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors
SMR3B	10879	genome.wustl.edu	36	4	71289977	71289977	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	4	71289977	71289977	G	C	SNP	SMR3B	NM_006685	human	genbank	54_36p	+1	validated	missense	c.63	p.E21D	0.227	NULL	NULL	-	no_errors
NEGR1	257194	genome.wustl.edu	36	1	71849309	71849309	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	71849309	71849309	T	A	SNP	NEGR1	NM_173808	human	genbank	54_36p	-1	validated	missense	c.776	p.K259I	1.000	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig	-	no_errors
GTF2IRD2P	401375	genome.wustl.edu	36	7	72323527	72323527	+	RNA	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	7	72323527	72323527	G	T	SNP	GTF2IRD2P	NR_002164	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.246	-	-	-	pseudogene
TRPM3	80036	genome.wustl.edu	36	9	72423780	72423780	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	9	72423780	72423780	G	A	SNP	TRPM3	NM_001007471	human	genbank	54_36p	-1	reviewed	silent	c.2145	p.D715	0.994	NULL	HMMPfam_Ion_trans	-	no_errors
TMEM174	134288	genome.wustl.edu	36	5	72504845	72504845	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	5	72504845	72504845	C	T	SNP	TMEM174	NM_153217	human	genbank	54_36p	+1	validated	missense	c.19	p.R7C	0.405	NULL	NULL	-	no_errors
XIST	7503	genome.wustl.edu	36	X	72958565	72958565	+	RNA	SNP	A	A	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	X	72958565	72958565	A	T	SNP	XIST	NR_001564	human	genbank	54_36p	-1	reviewed	rna	NULL	NULL	0.000	-	-	-	no_errors
PGS1	9489	genome.wustl.edu	36	17	73931768	73931768	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	17	73931768	73931768	C	T	SNP	PGS1	ENST00000335081	human	ensembl	54_36p	+1	known	missense	c.754	p.R252W	0.132	NULL	NULL	-	no_errors
GCNT4	51301	genome.wustl.edu	36	5	74360960	74360960	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	5	74360960	74360960	C	A	SNP	GCNT4	NM_016591	human	genbank	54_36p	-1	validated	missense	c.659	p.W220L	1.000	HMMPfam_Branch	HMMPfam_Branch	-	no_errors
TCEB1	6921	genome.wustl.edu	36	8	75030777	75030777	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	8	75030777	75030777	G	C	SNP	TCEB1	NM_005648	human	genbank	54_36p	-1	reviewed	missense	c.71	p.S24C	1.000	HMMSmart_SM00512,HMMPfam_Skp1_POZ,superfamily_POZ domain	HMMSmart_SM00512,HMMPfam_Skp1_POZ,superfamily_POZ domain	-	no_errors
ATP9B	374868	genome.wustl.edu	36	18	75164596	75164596	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	18	75164596	75164596	C	G	SNP	ATP9B	NM_198531	human	genbank	54_36p	+1	validated	silent	c.1416	p.T472	1.000	superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
SGK269	79834	genome.wustl.edu	36	15	75260134	75260134	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	15	75260134	75260134	T	C	SNP	SGK269	NM_024776	human	genbank	54_36p	-1	validated	missense	c.1190	p.K397R	0.452	NULL	PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
EDNRB	1910	genome.wustl.edu	36	13	77372769	77372769	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	13	77372769	77372769	C	T	SNP	EDNRB	NM_000115	human	genbank	54_36p	-1	reviewed	missense	c.973	p.V325I	0.991	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
USP35	57558	genome.wustl.edu	36	11	77599021	77599021	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	77599021	77599021	G	T	SNP	USP35	NM_020798	human	genbank	54_36p	+1	validated	silent	c.2472	p.L824	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
ZZZ3	26009	genome.wustl.edu	36	1	77871527	77871527	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	77871527	77871527	G	A	SNP	ZZZ3	NM_015534	human	genbank	54_36p	-1	provisional	missense	c.101	p.A34V	1.000	NULL	HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like,HMMPfam_ZZ,PatternScan_ZF_ZZ_1	-	no_errors
LOC442232	442232	genome.wustl.edu	36	6	81140716	81140716	+	RNA	SNP	T	T	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	6	81140716	81140716	T	G	SNP	LOC442232	XR_016559	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
AGBL1	123624	genome.wustl.edu	36	15	84608743	84608743	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	15	84608743	84608743	G	T	SNP	AGBL1	NM_152336	human	genbank	54_36p	+1	validated	missense	c.1199	p.S400I	0.000	NULL	superfamily_ARM repeat,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14	-	no_errors
ABCB4	5244	genome.wustl.edu	36	7	86919044	86919044	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	7	86919044	86919044	T	A	SNP	ABCB4	NM_018849	human	genbank	54_36p	-1	reviewed	missense	c.539	p.D180V	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
LOC729843	729843	genome.wustl.edu	36	2	87011257	87011257	+	RNA	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	87011257	87011257	G	T	SNP	LOC729843	XR_016056	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
FANCA	2175	genome.wustl.edu	36	16	88404710	88404710	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	16	88404710	88404710	T	C	SNP	FANCA	NM_000135	human	genbank	54_36p	-1	reviewed	missense	c.428	p.K143R	0.920	NULL	HMMPfam_Fanconi_A	-	no_errors
MMP16	4325	genome.wustl.edu	36	8	89197927	89197927	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	8	89197927	89197927	G	A	SNP	MMP16	NM_005941	human	genbank	54_36p	-1	reviewed	silent	c.1008	p.P336	0.989	superfamily_Hemopexin-like domain	"superfamily_PGBD-like,HMMPfam_PG_binding_1,PatternScan_CYSTEINE_SWITCH,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M10,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120,PatternScan_HEMOPEXIN"	-	no_errors
IGKV1-5	0	genome.wustl.edu	36	2	89302376	89302376	+	Missense_Mutation	SNP	C	C	T	rs11546092	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	89302376	89302376	C	T	SNP	IGKV1-5	ENST00000390259	human	ensembl	54_36p	-1	known	missense	c.278	p.G93D	0.998	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406	-	no_stop_codon:bad_bp_length_for_coding_region
GPR98	84059	genome.wustl.edu	36	5	90022526	90022526	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	5	90022526	90022526	T	C	SNP	GPR98	NM_032119	human	genbank	54_36p	+1	reviewed	missense	c.6863	p.V2288A	1.000	HMMSmart_SM00237	HMMSmart_SM00237,HMMPfam_Calx-beta,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP,PatternScan_A_DEAMINASE,PatternScan_LIPOYL,HMMPfam_GPS	-	no_errors
RBMS2P	643427	genome.wustl.edu	36	12	93342049	93342049	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	12	93342049	93342049	C	T	SNP	RBMS2P	XR_016607	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.993	-	-	-	pseudogene
HEPHL1	341208	genome.wustl.edu	36	11	93436458	93436458	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	93436458	93436458	G	C	SNP	HEPHL1	NM_001098672	human	genbank	54_36p	+1	validated	missense	c.552	p.W184C	1.000	superfamily_Cupredoxin	superfamily_Cupredoxin,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE1,PatternScan_MULTICOPPER_OXIDASE2	-	no_errors
TEKT4	150483	genome.wustl.edu	36	2	94901214	94901214	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	94901214	94901214	G	A	SNP	TEKT4	NM_144705	human	genbank	54_36p	+1	provisional	missense	c.163	p.A55T	1.000	HMMPfam_Tektin	HMMPfam_Tektin	-	no_errors
DPY19L4	286148	genome.wustl.edu	36	8	95820825	95820825	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	8	95820825	95820825	G	A	SNP	DPY19L4	NM_181787	human	genbank	54_36p	+1	validated	missense	c.352	p.E118K	1.000	HMMPfam_DUF2211	HMMPfam_DUF2211	-	no_errors
CNGA3	1261	genome.wustl.edu	36	2	98380114	98380114	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	98380114	98380114	C	T	SNP	CNGA3	NM_001298	human	genbank	54_36p	+1	reviewed	silent	c.2049	p.P683	0.652	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors
C14orf68	283600	genome.wustl.edu	36	14	99865608	99865608	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	14	99865608	99865608	G	A	SNP	C14orf68	NM_207117	human	genbank	54_36p	+1	validated	missense	c.800	p.R267Q	0.910	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	HMMPfam_Mito_carr,superfamily_Mitochondrial carrier	-	no_errors
PLOD3	8985	genome.wustl.edu	36	7	100642336	100642336	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	7	100642336	100642336	G	A	SNP	PLOD3	NM_001084	human	genbank	54_36p	-1	reviewed	nonsense	c.1045	p.Q349*	0.653	NULL	HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy,PatternScan_LYS_HYDROXYLASE	-	no_errors
GLT8D2	83468	genome.wustl.edu	36	12	102917333	102917333	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	12	102917333	102917333	T	A	SNP	GLT8D2	NM_031302	human	genbank	54_36p	-1	provisional	missense	c.374	p.D125V	1.000	superfamily_SSF53448,HMMPfam_Glyco_transf_8	superfamily_SSF53448,HMMPfam_Glyco_transf_8	-	no_errors
NFKB1	4790	genome.wustl.edu	36	4	103707253	103707253	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	4	103707253	103707253	C	T	SNP	NFKB1	NM_003998	human	genbank	54_36p	+1	reviewed	missense	c.332	p.A111V	1.000	superfamily_P53_like_DNA_bnd,HMMPfam_RHD,superfamily_ANK	superfamily_P53_like_DNA_bnd,HMMPfam_RHD,PatternScan_REL_1,superfamily_ANK,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG,HMMPfam_Ank,HMMSmart_ANK,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
BTBD11	121551	genome.wustl.edu	36	12	106536183	106536183	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	12	106536183	106536183	G	A	SNP	BTBD11	NM_001018072	human	genbank	54_36p	+1	validated	missense	c.2350	p.A784T	0.995	NULL	superfamily_Histone-fold,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	-	no_errors
SEPT10	151011	genome.wustl.edu	36	2	109659068	109659068	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	109659068	109659068	A	C	SNP	SEPT10	ENST00000356688	human	ensembl	54_36p	-1	known	missense	c.1468	p.F490V	0.062	NULL	superfamily_SSF52540,HMMPfam_Septin	-	no_start_codon
LRRN3	54674	genome.wustl.edu	36	7	110550913	110550913	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	7	110550913	110550913	G	A	SNP	LRRN3	NM_001099658	human	genbank	54_36p	+1	validated	missense	c.849	p.M283I	1.000	superfamily_L domain-like,HMMPfam_LRR_1	superfamily_L domain-like,HMMSmart_SM00013,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
SVEP1	79987	genome.wustl.edu	36	9	112213507	112213507	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	9	112213507	112213507	A	T	SNP	SVEP1	NM_153366	human	genbank	54_36p	-1	validated	missense	c.6305	p.F2102Y	1.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Growth factor receptor domain,PatternScan_EGF_2,HMMPfam_GCC2_GCC3,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_HYR,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Pentaxin,HMMPfam_EGF_CA,HMMPfam_EGF_2	-	no_errors
USP28	57646	genome.wustl.edu	36	11	113199537	113199537	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	113199537	113199537	C	G	SNP	USP28	NM_020886	human	genbank	54_36p	-1	validated	missense	c.1283	p.R428T	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_UBA-like,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_CPSASE_2	-	no_errors
TBX5	6910	genome.wustl.edu	36	12	113307682	113307682	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	12	113307682	113307682	C	A	SNP	TBX5	NM_000192	human	genbank	54_36p	-1	reviewed	missense	c.737	p.R246I	1.000	NULL	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors
AP4B1	10717	genome.wustl.edu	36	1	114240417	114240417	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	114240417	114240417	A	G	SNP	AP4B1	NM_006594	human	genbank	54_36p	-1	validated	missense	c.1496	p.L499S	0.993	superfamily_ARM-type_fold,HMMPfam_Adaptin_N	superfamily_ARM-type_fold,HMMPfam_Adaptin_N,HMMPfam_B2-adapt-app_C	-	no_errors
C9orf43	257169	genome.wustl.edu	36	9	115225513	115225513	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	9	115225513	115225513	C	G	SNP	C9orf43	NM_152786	human	genbank	54_36p	+1	predicted	silent	c.570	p.T190	0.065	NULL	NULL	-	no_errors
LOC728693	728693	genome.wustl.edu	36	12	115678029	115678029	+	RNA	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	12	115678029	115678029	G	C	SNP	LOC728693	XR_015773	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.995	-	-	-	pseudogene
AMBP	259	genome.wustl.edu	36	9	115880195	115880195	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	9	115880195	115880195	C	G	SNP	AMBP	NM_001633	human	genbank	54_36p	-1	reviewed	missense	c.116	p.R39P	0.862	superfamily_Calycin,PatternScan_LIPOCALIN	superfamily_Calycin,PatternScan_LIPOCALIN,HMMPfam_Lipocalin,superfamily_Prot_inh_Kunz-m,HMMSmart_KU,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors
INSIG2	51141	genome.wustl.edu	36	2	118580782	118580782	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	118580782	118580782	G	T	SNP	INSIG2	NM_016133	human	genbank	54_36p	+1	reviewed	splice_site	c.370-1	e3-1	1.000	-	-	-	no_errors
SRFBP1	153443	genome.wustl.edu	36	5	121382897	121382897	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	5	121382897	121382897	T	C	SNP	SRFBP1	NM_152546	human	genbank	54_36p	+1	validated	missense	c.314	p.V105A	0.391	NULL	HMMPfam_BUD22	-	no_errors
C6orf170	221322	genome.wustl.edu	36	6	121655007	121655007	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	6	121655007	121655007	T	C	SNP	C6orf170	NM_152730	human	genbank	54_36p	-1	validated	silent	c.1263	p.G421	1.000	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
GOLGB1	2804	genome.wustl.edu	36	3	122895356	122895356	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	3	122895356	122895356	T	G	SNP	GOLGB1	NM_004487	human	genbank	54_36p	-1	validated	missense	c.6689	p.E2230A	1.000	NULL	superfamily_Spectrin repeat,superfamily_Prefoldin,HMMSmart_SM00340	-	no_errors
ODZ1	10178	genome.wustl.edu	36	X	123345356	123345356	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	X	123345356	123345356	C	G	SNP	ODZ1	NM_014253	human	genbank	54_36p	-1	provisional	missense	c.7085	p.G2362A	1.000	NULL	HMMPfam_Ten_N,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_SSF57196,superfamily_SSF101898,HMMPfam_NHL,superfamily_N2O_reductase_N,HMMPfam_RHS_repeat	-	no_errors
DERL1	79139	genome.wustl.edu	36	8	124123541	124123541	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	8	124123541	124123541	C	T	SNP	DERL1	NM_024295	human	genbank	54_36p	-1	validated	missense	c.3	p.M1I	1.000	NULL	HMMPfam_DER1	-	no_errors
HEPN1	641654	genome.wustl.edu	36	11	124295054	124295054	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	124295054	124295054	C	T	SNP	HEPN1	NM_001037558	human	genbank	54_36p	+1	provisional	silent	c.198	p.F66	0.000	NULL	NULL	-	no_errors
ALDH1L1	10840	genome.wustl.edu	36	3	127356126	127356126	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	3	127356126	127356126	G	T	SNP	ALDH1L1	NM_012190	human	genbank	54_36p	-1	reviewed	missense	c.681	p.N227K	0.996	superfamily_FMT_C_like,HMMPfam_Formyl_trans_C	PatternScan_PHOSPHOPANTETHEINE,HMMPfam_Formyl_trans_N,superfamily_formyl_transf,PatternScan_GART,superfamily_FMT_C_like,HMMPfam_Formyl_trans_C,superfamily_ACP_like,superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors
ETS1	2113	genome.wustl.edu	36	11	127864585	127864585	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	127864585	127864585	C	A	SNP	ETS1	NM_005238	human	genbank	54_36p	-1	validated	missense	c.213	p.Q71H	1.000	superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
PLXNA4	91584	genome.wustl.edu	36	7	131562867	131562867	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	7	131562867	131562867	C	G	SNP	PLXNA4	NM_020911	human	genbank	54_36p	-1	validated	missense	c.1765	p.A589P	1.000	NULL	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors
TG	7038	genome.wustl.edu	36	8	133954607	133954607	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	8	133954607	133954607	C	T	SNP	TG	NM_003235	human	genbank	54_36p	+1	validated	silent	c.597	p.T199	1.000	superfamily_Thyroglobulin type-1 domain	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors
SETX	23064	genome.wustl.edu	36	9	134193389	134193389	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	9	134193389	134193389	T	C	SNP	SETX	NM_015046	human	genbank	54_36p	-1	reviewed	silent	c.3417	p.E1139	0.031	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
FAM135B	51059	genome.wustl.edu	36	8	139214033	139214033	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	8	139214033	139214033	G	T	SNP	FAM135B	NM_015912	human	genbank	54_36p	-1	validated	silent	c.4206	p.L1402	1.000	NULL	superfamily_alpha/beta-Hydrolases,HMMPfam_DUF676	-	no_errors
TSNARE1	203062	genome.wustl.edu	36	8	143379887	143379887	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	8	143379887	143379887	A	G	SNP	TSNARE1	NM_145003	human	genbank	54_36p	-1	validated	missense	c.1157	p.L386P	0.995	superfamily_t-snare	superfamily_t-snare,HMMSmart_t_SNARE,HMMPfam_SNARE	-	no_errors
TRPC1	7220	genome.wustl.edu	36	3	143994446	143994446	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	3	143994446	143994446	T	A	SNP	TRPC1	NM_003304	human	genbank	54_36p	+1	validated	missense	c.1426	p.Y476N	1.000	HMMPfam_Ion_trans	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_TRP_2,HMMPfam_Ion_trans	-	no_errors
ANKRD35	148741	genome.wustl.edu	36	1	144271532	144271532	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	144271532	144271532	G	A	SNP	ANKRD35	NM_144698	human	genbank	54_36p	+1	validated	missense	c.661	p.D221N	0.437	superfamily_ANK	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
ZEB2	9839	genome.wustl.edu	36	2	144878893	144878893	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	144878893	144878893	G	C	SNP	ZEB2	NM_014795	human	genbank	54_36p	-1	validated	missense	c.572	p.A191G	1.000	NULL	PatternScan_HOMEOBOX_1,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX	-	no_errors
GJA8	2703	genome.wustl.edu	36	1	145847066	145847066	+	Silent	SNP	T	T	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	145847066	145847066	T	G	SNP	GJA8	NM_005267	human	genbank	54_36p	+1	validated	silent	c.360	p.T120	0.375	HMMPfam_Connexin	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2,HMMPfam_Connexin50	-	no_errors
CNTNAP2	26047	genome.wustl.edu	36	7	146167867	146167867	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	7	146167867	146167867	C	A	SNP	CNTNAP2	NM_014141	human	genbank	54_36p	+1	reviewed	silent	c.340	p.R114	1.000	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like,PatternScan_GLYCO_HORMONE_BETA_1,HMMSmart_SM00294	-	no_errors
TM4SF1	4071	genome.wustl.edu	36	3	150577963	150577963	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	3	150577963	150577963	C	G	SNP	TM4SF1	NM_014220	human	genbank	54_36p	-1	reviewed	missense	c.62	p.C21S	1.000	HMMPfam_L6_membrane	HMMPfam_L6_membrane	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150594679	150594679	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	150594679	150594679	C	T	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.2207	p.G736E	0.191	HMMPfam_SVS_QK	superfamily_SSF47473,HMMPfam_S_100,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,HMMPfam_Filaggrin	-	no_errors
LRBA	987	genome.wustl.edu	36	4	151406338	151406338	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	4	151406338	151406338	G	C	SNP	LRBA	NM_006726	human	genbank	54_36p	-1	validated	missense	c.8578	p.Q2860E	1.000	superfamily_WD40 repeat-like	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
RIF1	55183	genome.wustl.edu	36	2	152030527	152030527	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	152030527	152030527	A	T	SNP	RIF1	NM_018151	human	genbank	54_36p	+1	validated	missense	c.6247	p.N2083Y	0.000	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_ABC_TRANSPORTER_1	-	no_errors
SYNE1	23345	genome.wustl.edu	36	6	152618541	152618541	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	6	152618541	152618541	C	G	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	missense	c.19138	p.E6380Q	1.000	superfamily_Spectrin repeat	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH	-	no_errors
F8	2157	genome.wustl.edu	36	X	153788041	153788041	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	X	153788041	153788041	C	T	SNP	F8	NM_000132	human	genbank	54_36p	-1	reviewed	missense	c.5221	p.A1741T	0.741	superfamily_Cupredoxins	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_2,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2	-	no_errors
TLR2	7097	genome.wustl.edu	36	4	154844656	154844656	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	4	154844656	154844656	G	A	SNP	TLR2	NM_003264	human	genbank	54_36p	+1	reviewed	missense	c.1147	p.E383K	0.265	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR	-	no_errors
COPA	1314	genome.wustl.edu	36	1	158559852	158559852	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	158559852	158559852	G	T	SNP	COPA	NM_001098398	human	genbank	54_36p	-1	reviewed	silent	c.699	p.R233	0.993	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	HMMSmart_WD40,HMMPfam_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_Coatomer_WDAD,HMMPfam_COPI_C,superfamily_Calret_calnex_P	-	no_errors
IFIH1	64135	genome.wustl.edu	36	2	162853016	162853016	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	162853016	162853016	T	A	SNP	IFIH1	NM_022168	human	genbank	54_36p	-1	reviewed	missense	c.970	p.N324Y	1.000	HMMSmart_SM00487,HMMPfam_ResIII,superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_DEATH domain,HMMPfam_CARD,HMMSmart_SM00487,HMMPfam_ResIII,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
ILDR2	387597	genome.wustl.edu	36	1	165162946	165162946	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	165162946	165162946	T	C	SNP	ILDR2	NM_199351	human	genbank	54_36p	-1	provisional	missense	c.976	p.R326G	1.000	NULL	superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_LSR	-	no_errors
F5	2153	genome.wustl.edu	36	1	167782411	167782411	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	167782411	167782411	T	A	SNP	F5	NM_000130	human	genbank	54_36p	-1	reviewed	missense	c.1655	p.D552V	1.000	superfamily_Cupredoxins	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_LSPR,superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2	-	no_errors
PAPPA2	60676	genome.wustl.edu	36	1	175006865	175006865	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	175006865	175006865	C	T	SNP	PAPPA2	NM_020318	human	genbank	54_36p	+1	validated	silent	c.4641	p.D1547	0.888	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00004,HMMPfam_Notch,PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M43,PatternScan_N6_MTASE,superfamily_Complement control module/SCR domain,HMMSmart_SM00032,HMMPfam_Sushi,superfamily_Notch domain"	-	no_errors
GPR155	151556	genome.wustl.edu	36	2	175054909	175054909	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	175054909	175054909	C	G	SNP	GPR155	NM_001033045	human	genbank	54_36p	-1	validated	missense	c.22	p.E8Q	0.850	NULL	"HMMPfam_Mem_trans,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP"	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179134009	179134009	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	179134009	179134009	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.73039	p.V24347I	0.912	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179184921	179184921	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	179184921	179184921	A	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.38306	p.V12769G	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179205228	179205228	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	179205228	179205228	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.31584	p.D10528	0.966	HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179237029	179237029	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	179237029	179237029	A	T	SNP	TTN	ENST00000392423	human	ensembl	54_36p	-1	known	missense	c.1144	p.S382T	0.000	NULL	HMMPfam_PPAK	-	no_start_codon:no_stop_codon
NCKAP1	10787	genome.wustl.edu	36	2	183503735	183503735	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	183503735	183503735	T	C	SNP	NCKAP1	NM_205842	human	genbank	54_36p	-1	validated	silent	c.2904	p.S968	0.729	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
FLJ44048	401024	genome.wustl.edu	36	2	186379577	186379577	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	186379577	186379577	A	G	SNP	FLJ44048	NM_207482	human	genbank	54_36p	+1	validated	missense	c.1393	p.K465E	0.004	NULL	NULL	-	no_errors
LRP2BP	55805	genome.wustl.edu	36	4	186536264	186536264	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	4	186536264	186536264	T	A	SNP	LRP2BP	NM_018409	human	genbank	54_36p	-1	validated	missense	c.71	p.N24I	0.001	NULL	superfamily_HCP-like,HMMPfam_TPR_2,HMMSmart_SM00671,HMMPfam_Sel1	-	no_errors
TRIML2	205860	genome.wustl.edu	36	4	189249732	189249732	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	4	189249732	189249732	T	A	SNP	TRIML2	NM_173553	human	genbank	54_36p	-1	provisional	missense	c.953	p.D318V	0.002	HMMPfam_SPRY	HMMSmart_PRY,HMMPfam_SPRY	-	no_errors
CFH	3075	genome.wustl.edu	36	1	194979359	194979359	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	194979359	194979359	G	T	SNP	CFH	NM_000186	human	genbank	54_36p	+1	reviewed	missense	c.3288	p.W1096C	0.944	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
AVPR1B	553	genome.wustl.edu	36	1	204391710	204391710	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	204391710	204391710	C	T	SNP	AVPR1B	NM_000707	human	genbank	54_36p	+1	reviewed	missense	c.647	p.T216M	0.951	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC100131192	0	genome.wustl.edu	36	1	204769484	204769484	+	RNA	SNP	A	A	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	204769484	204769484	A	C	SNP	LOC100131192	XR_037173	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
CPO	130749	genome.wustl.edu	36	2	207512601	207512601	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	207512601	207512601	G	A	SNP	CPO	NM_173077	human	genbank	54_36p	+1	validated	silent	c.33	p.L11	0.527	NULL	PatternScan_CARBOXYPEPT_ZN_2,superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1	-	no_errors
KCNK2	3776	genome.wustl.edu	36	1	213409164	213409164	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	213409164	213409164	G	T	SNP	KCNK2	NM_001017425	human	genbank	54_36p	+1	reviewed	splice_site	c.476-1	e4-1	1.000	-	-	-	no_errors
ACTN2	88	genome.wustl.edu	36	1	234948829	234948829	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	234948829	234948829	C	A	SNP	ACTN2	NM_001103	human	genbank	54_36p	+1	reviewed	missense	c.254	p.P85H	1.000	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,HMMPfam_efhand_Ca_insen	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235904081	235904081	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	235904081	235904081	G	C	SNP	RYR2	NM_001035	human	genbank	54_36p	+1	reviewed	missense	c.8653	p.D2885H	1.000	HMMPfam_RyR	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
GBX2	2637	genome.wustl.edu	36	2	236739568	236739568	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	236739568	236739568	G	C	SNP	GBX2	NM_001485	human	genbank	54_36p	-1	validated	missense	c.775	p.L259V	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
LOC399988	399988	genome.wustl.edu	36	12	4078213	4078213	+	RNA	DEL	T	T	-	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	12	4078213	4078213	T	-	DEL	LOC399988	XR_016353	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.996	-	-	(deletion:rna[4077632,4079033])	pseudogene
TP53	7157	genome.wustl.edu	36	17	7520046	7520047	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	CA	CA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	17	7520046	7520047	CA	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.366_365	p.V122fs	0.615:0.928	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7520037,7520315])	no_errors
CTR9	9646	genome.wustl.edu	36	11	10752174	10752175	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	GA	GA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	11	10752174	10752175	GA	-	DEL	CTR9	NM_014633	human	genbank	54_36p	+1	provisional	frame_shift_del	c.2767_2768	p.D923fs	1.000:1.000	NULL	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	(deletion:cds_exon[10752135,10752292])	no_errors
CACNA2D2	9254	genome.wustl.edu	36	3	50379010	50379011	+	Splice_Site	INS	-	-	A	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	3	50379010	50379011	-	A	INS	CACNA2D2	NM_001005505	human	genbank	54_36p	-1	reviewed	splice_site_ins	c.2637+2_2637+1	e30+2	0.155:0.989	-	-	-	no_errors
LOC388122	388122	genome.wustl.edu	36	15	50965698	50965705	+	Frame_Shift_Del	DEL	AGAGACTG	AGAGACTG	-	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	AGAGACTG	AGAGACTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	15	50965698	50965705	AGAGACTG	-	DEL	LOC388122	XM_370865	human	genbank	54_36p	+1	model	frame_shift_del	c.615_622	p.E206fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	superfamily_Ribosomal protein S2,HMMPfam_Ribosomal_S2,PatternScan_RIBOSOMAL_S2_2	(deletion:cds_exon[50965084,50965962])	pseudogene
C14orf53	440184	genome.wustl.edu	36	14	66023062	66023063	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	TC	TC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	14	66023062	66023063	TC	-	DEL	C14orf53	ENST00000389594	human	ensembl	54_36p	+1	known	frame_shift_del	c.21_22	p.S11fs	0.000:0.000	NULL	NULL	(deletion:cds_exon[66023042,66023280])	no_errors
LLGL2	3993	genome.wustl.edu	36	17	71063797	71063803	+	Frame_Shift_Del	DEL	ACCCGTT	ACCCGTT	-	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	ACCCGTT	ACCCGTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	17	71063797	71063803	ACCCGTT	-	DEL	LLGL2	NM_001031803	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.151_157	p.T51fs	0.998:0.998:0.930:0.935:0.933:0.897:0.987	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,HMMPfam_WD40,PatternScan_WD_REPEATS_1	(deletion:cds_exon[71063722,71063819])	no_errors
EEF1A1	1915	genome.wustl.edu	36	6	74285819	74285820	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	TG	TG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	6	74285819	74285820	TG	-	DEL	EEF1A1	NM_001402	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.286_285	p.H95fs	1.000:1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	(deletion:cds_exon[74285781,74285960])	no_errors
CAMK4	814	genome.wustl.edu	36	5	110841980	110841987	+	Frame_Shift_Del	DEL	TTTGTGGA	TTTGTGGA	-	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	TTTGTGGA	TTTGTGGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	5	110841980	110841987	TTTGTGGA	-	DEL	CAMK4	NM_001744	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.704_711	p.C236fs	1.000:0.990:1.000:1.000:1.000:1.000:1.000:0.999	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[110841978,110842104])	no_errors
ENOX2	10495	genome.wustl.edu	36	X	129631697	129631697	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	X	129631697	129631697	C	-	DEL	ENOX2	NM_182314	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.704	p.R235fs	0.993	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	(deletion:cds_exon[129631620,129631853])	no_errors
LOC339742	339742	genome.wustl.edu	36	2	132823314	132823315	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	2	132823314	132823315	-	C	INS	LOC339742	XM_929883	human	genbank	54_36p	+1	model	frame_shift_ins	c.10_11	p.I4fs	0.008:0.007	NULL	NULL	-	no_errors
TOPBP1	11073	genome.wustl.edu	36	3	134851405	134851405	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	3	134851405	134851405	G	-	DEL	TOPBP1	NM_007027	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.901	p.R301fs	1.000	HMMPfam_BRCT,superfamily_BRCT,HMMSmart_BRCT	superfamily_BRCT,HMMPfam_BRCT,HMMSmart_BRCT,superfamily_Secretoglobin	(deletion:cds_exon[134851314,134851477])	no_errors
CNTNAP2	26047	genome.wustl.edu	36	7	147557785	147557787	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	AGA	AGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	7	147557785	147557787	AGA	-	DEL	CNTNAP2	NM_014141	human	genbank	54_36p	+1	reviewed	in_frame_del	c.3362_3364	p.K1122in_frame_del	0.062:0.036:0.022	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like,PatternScan_GLYCO_HORMONE_BETA_1,HMMSmart_SM00294	(deletion:cds_exon[147557671,147557804])	no_errors
PROX1	5629	genome.wustl.edu	36	1	212237495	212237498	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel	unknown	TCGA-29-1761-01A-01W-0633-09	TCGA-29-1761-10A-01W-0633-09	AAAG	AAAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9cd97680-82f8-4827-bc49-f3bb5e413b0e	bebb3242-ccdf-4555-8153-5e66c94046e8	1	212237495	212237498	AAAG	-	DEL	PROX1	NM_002763	human	genbank	54_36p	+1	provisional	frame_shift_del	c.994_997	p.R334fs	1.000:1.000:1.000:1.000	HMMPfam_Prox1	HMMPfam_Prox1,superfamily_Homeodomain_like	(deletion:cds_exon[212236502,212238226])	no_errors
