Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ENSG00000215768	0	genome.wustl.edu	36	NT_113933	59675	59675	+	Nonstop_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	NT_113933	59675	59675	C	A	SNP	ENSG00000215768	ENST00000400874	human	ensembl	54_36p	-1	known	nonstop	c.209	p.*70M	NULL	superfamily_Secretoglobin,HMMSmart_UTG	superfamily_Secretoglobin,HMMSmart_UTG	-	no_errors
CSMD1	64478	genome.wustl.edu	36	8	3007150	3007150	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	8	3007150	3007150	C	T	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	missense	c.5786	p.R1929Q	0.911	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
OR3A2	4995	genome.wustl.edu	36	17	3128409	3128409	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	17	3128409	3128409	G	C	SNP	OR3A2	NM_002551	human	genbank	54_36p	-1	validated	missense	c.571	p.P191A	0.008	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
ATP2A3	489	genome.wustl.edu	36	17	3797809	3797809	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	17	3797809	3797809	C	G	SNP	ATP2A3	NM_174953	human	genbank	54_36p	-1	reviewed	silent	c.720	p.A240	0.954	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_HAD-like,HMMPfam_Cation_ATPase_C	-	no_errors
FSD1	79187	genome.wustl.edu	36	19	4269405	4269405	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	19	4269405	4269405	G	A	SNP	FSD1	NM_024333	human	genbank	54_36p	+1	provisional	missense	c.862	p.V288M	1.000	NULL	HMMSmart_BBC,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMPfam_SPRY	-	no_errors
RANBP6	26953	genome.wustl.edu	36	9	6003910	6003910	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	9	6003910	6003910	G	T	SNP	RANBP6	NM_012416	human	genbank	54_36p	-1	validated	silent	c.1698	p.I566	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_HEAT	-	no_errors
ICMT	23463	genome.wustl.edu	36	1	6216222	6216222	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	6216222	6216222	C	A	SNP	ICMT	NM_012405	human	genbank	54_36p	-1	reviewed	missense	c.353	p.S118I	1.000	NULL	HMMPfam_ICMT	-	no_errors
ENSG00000206033	0	genome.wustl.edu	36	8	7178490	7178490	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	8	7178490	7178490	C	T	SNP	ENSG00000206033	ENST00000382655	human	ensembl	54_36p	+1	known	missense	c.1172	p.P391L	0.001	NULL	PatternScan_UCH_2_1,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_2	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	17	7519131	7519131	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.524	p.R175H	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
CHD3	1107	genome.wustl.edu	36	17	7754586	7754586	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	17	7754586	7754586	C	T	SNP	CHD3	NM_001005271	human	genbank	54_36p	+1	reviewed	silent	c.5841	p.S1947	1.000	HMMPfam_CHDCT2	HMMPfam_CHDNT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00298,superfamily_Chromo domain-like,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_CHROMO_1,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors
NLRP10	338322	genome.wustl.edu	36	11	7938342	7938342	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	11	7938342	7938342	G	T	SNP	NLRP10	NM_176821	human	genbank	54_36p	-1	reviewed	missense	c.1393	p.R465S	0.325	NULL	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,superfamily_SSF52540,HMMPfam_NACHT	-	no_errors
OR7D4	125958	genome.wustl.edu	36	19	9186424	9186424	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	19	9186424	9186424	C	G	SNP	OR7D4	NM_001005191	human	genbank	54_36p	-1	provisional	silent	c.90	p.L30	0.014	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ANKRD12	23253	genome.wustl.edu	36	18	9245428	9245428	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	18	9245428	9245428	A	G	SNP	ANKRD12	NM_015208	human	genbank	54_36p	+1	validated	silent	c.2163	p.E721	1.000	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
DRD5	1816	genome.wustl.edu	36	4	9392817	9392817	+	Silent	SNP	G	A	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	4	9392817	9392817	G	A	SNP	DRD5	NM_000798	human	genbank	54_36p	+1	reviewed	silent	c.66	p.A22	0.136	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
MYH4	4622	genome.wustl.edu	36	17	10307635	10307635	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	17	10307635	10307635	G	A	SNP	MYH4	NM_017533	human	genbank	54_36p	-1	validated	silent	c.699	p.F233	1.000	superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_Myosin_tail_1	-	no_errors
CCT5	22948	genome.wustl.edu	36	5	10311338	10311338	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	5	10311338	10311338	G	A	SNP	CCT5	NM_012073	human	genbank	54_36p	+1	reviewed	missense	c.646	p.G216S	1.000	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL-intermediate domain like	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like	-	no_errors
TNFRSF8	943	genome.wustl.edu	36	1	12098309	12098309	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	12098309	12098309	C	A	SNP	TNFRSF8	NM_001243	human	genbank	54_36p	+1	reviewed	silent	c.882	p.T294	0.871	superfamily_TNF receptor-like	HMMPfam_TNFR_c6,HMMSmart_SM00208,superfamily_TNF receptor-like,PatternScan_TNFR_NGFR_1	-	no_errors
FBLN2	2199	genome.wustl.edu	36	3	13652996	13652996	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	3	13652996	13652996	T	C	SNP	FBLN2	ENST00000295761	human	ensembl	54_36p	+1	known	missense	c.3262	p.C1088R	1.000	PatternScan_EGF_CA,HMMSmart_SM00179,HMMPfam_EGF_CA,HMMSmart_SM00181,superfamily_EGF/Laminin	HMMSmart_SM00181,HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
LOC729057	729057	genome.wustl.edu	36	22	14503027	14503027	+	RNA	SNP	T	T	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	22	14503027	14503027	T	G	SNP	LOC729057	XR_042044	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
FAM105A	54491	genome.wustl.edu	36	5	14655388	14655388	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	5	14655388	14655388	T	G	SNP	FAM105A	NM_019018	human	genbank	54_36p	+1	validated	missense	c.445	p.F149V	1.000	NULL	NULL	-	no_errors
EPS15L1	58513	genome.wustl.edu	36	19	16406258	16406258	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	19	16406258	16406258	A	G	SNP	EPS15L1	NM_021235	human	genbank	54_36p	-1	provisional	missense	c.416	p.L139S	0.540	superfamily_SSF47473,HMMSmart_EH	superfamily_SSF47473,HMMSmart_EH,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
EFHA2	286097	genome.wustl.edu	36	8	16965973	16965973	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	8	16965973	16965973	G	A	SNP	EFHA2	NM_181723	human	genbank	54_36p	+1	provisional	missense	c.391	p.G131S	0.089	NULL	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
KCNC1	3746	genome.wustl.edu	36	11	17750447	17750447	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	11	17750447	17750447	G	A	SNP	KCNC1	NM_004976	human	genbank	54_36p	+1	reviewed	silent	c.1230	p.T410	0.996	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-	no_errors
SATB1	6304	genome.wustl.edu	36	3	18403085	18403085	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	3	18403085	18403085	C	T	SNP	SATB1	NM_002971	human	genbank	54_36p	-1	validated	missense	c.1229	p.R410Q	1.000	HMMPfam_CUT	HMMPfam_CUT,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox	-	no_errors
MAPK7	5598	genome.wustl.edu	36	17	19227094	19227094	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	17	19227094	19227094	C	A	SNP	MAPK7	NM_002749	human	genbank	54_36p	+1	reviewed	missense	c.2408	p.S803Y	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST	-	no_errors
RIN2	54453	genome.wustl.edu	36	20	19929350	19929350	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	20	19929350	19929350	C	T	SNP	RIN2	NM_018993	human	genbank	54_36p	+1	reviewed	nonsense	c.2458	p.Q820*	0.951	HMMPfam_RA,HMMSmart_SM00314	superfamily_SH2 domain,superfamily_VPS9 domain (Pfam 02204),HMMSmart_SM00167,HMMPfam_VPS9,HMMPfam_RA,HMMSmart_SM00314	-	no_errors
LOC646805	646805	genome.wustl.edu	36	16	20514629	20514629	+	Silent	SNP	A	A	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	16	20514629	20514629	A	C	SNP	LOC646805	XM_001726979	human	genbank	54_36p	-1	model	silent	c.246	p.V82	0.931	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like	-	no_errors
ZNF521	25925	genome.wustl.edu	36	18	21059502	21059502	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	18	21059502	21059502	C	G	SNP	ZNF521	NM_015461	human	genbank	54_36p	-1	validated	missense	c.2378	p.G793A	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF521	25925	genome.wustl.edu	36	18	21061555	21061555	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	18	21061555	21061555	C	G	SNP	ZNF521	NM_015461	human	genbank	54_36p	-1	validated	missense	c.325	p.E109Q	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
RAP1GAP	5909	genome.wustl.edu	36	1	21817032	21817032	+	Silent	SNP	T	T	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	21817032	21817032	T	G	SNP	RAP1GAP	NM_002885	human	genbank	54_36p	-1	validated	silent	c.87	p.P29	0.960	NULL	HMMPfam_GoLoco,HMMSmart_SM00390,superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP	-	no_errors
LOC100128717	0	genome.wustl.edu	36	17	22116907	22116907	+	RNA	SNP	G	T	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	17	22116907	22116907	G	T	SNP	LOC100128717	XR_037607	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
TCEB3	6924	genome.wustl.edu	36	1	23949930	23949930	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	23949930	23949930	A	G	SNP	TCEB3	NM_003198	human	genbank	54_36p	+1	reviewed	missense	c.248	p.E83G	0.944	HMMPfam_TFIIS	superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70,HMMPfam_TFIIS,HMMSmart_SM00509,HMMPfam_Elongin_A	-	no_errors
DSG3	1830	genome.wustl.edu	36	18	27281850	27281850	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	18	27281850	27281850	C	A	SNP	DSG3	NM_001944	human	genbank	54_36p	+1	reviewed	silent	c.12	p.L4	0.021	NULL	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin,PatternScan_CADHERIN_1	-	no_errors
PRKD1	5587	genome.wustl.edu	36	14	29117253	29117253	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	14	29117253	29117253	G	T	SNP	PRKD1	NM_002742	human	genbank	54_36p	-1	validated	silent	c.2499	p.T833	0.986	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
OR5V1	81696	genome.wustl.edu	36	6	29431230	29431230	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	6	29431230	29431230	C	A	SNP	OR5V1	NM_030876	human	genbank	54_36p	-1	validated	missense	c.722	p.C241F	0.998	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR10C1	442194	genome.wustl.edu	36	6	29493043	29493043	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	6	29493043	29493043	A	G	SNP	OR10C1	ENST00000383554	human	ensembl	54_36p	+1	known	missense	c.8	p.N3S	0.315	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DTNA	1837	genome.wustl.edu	36	18	30692360	30692360	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	18	30692360	30692360	G	T	SNP	DTNA	NM_001390	human	genbank	54_36p	+1	reviewed	missense	c.1565	p.R522I	1.000	NULL	superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1	-	no_errors
HEATR5A	25938	genome.wustl.edu	36	14	30848009	30848009	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	14	30848009	30848009	T	C	SNP	HEATR5A	NM_015473	human	genbank	54_36p	-1	validated	silent	c.3693	p.E1231	0.974	NULL	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
FAM60A	58516	genome.wustl.edu	36	12	31338048	31338048	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	12	31338048	31338048	T	A	SNP	FAM60A	NM_021238	human	genbank	54_36p	-1	validated	missense	c.313	p.S105C	1.000	NULL	NULL	-	no_errors
GGT7	2686	genome.wustl.edu	36	20	32903939	32903939	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	20	32903939	32903939	G	T	SNP	GGT7	NM_178026	human	genbank	54_36p	-1	reviewed	silent	c.1383	p.L461	0.901	HMMPfam_G_glu_transpept	HMMPfam_G_glu_transpept	-	no_errors
YARS	8565	genome.wustl.edu	36	1	33024584	33024584	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	33024584	33024584	G	T	SNP	YARS	NM_003680	human	genbank	54_36p	-1	reviewed	missense	c.872	p.A291D	0.839	superfamily_Nucleotidylyl transferase,HMMPfam_tRNA-synt_1b	superfamily_Nucleotidylyl transferase,HMMPfam_tRNA-synt_1b,superfamily_Nucleic acid-binding proteins,HMMPfam_tRNA_bind	-	no_errors
PARD3	56288	genome.wustl.edu	36	10	34711766	34711766	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	10	34711766	34711766	T	C	SNP	PARD3	NM_019619	human	genbank	54_36p	-1	provisional	silent	c.1107	p.L369	0.444	superfamily_PDZ domain-like	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ	-	no_errors
C19orf2	8725	genome.wustl.edu	36	19	35195069	35195069	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	19	35195069	35195069	C	G	SNP	C19orf2	NM_003796	human	genbank	54_36p	+1	reviewed	missense	c.1216	p.R406G	1.000	NULL	superfamily_Prefoldin,HMMPfam_Prefoldin	-	no_errors
TRIOBP	11078	genome.wustl.edu	36	22	36450055	36450055	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	22	36450055	36450055	T	C	SNP	TRIOBP	NM_001039141	human	genbank	54_36p	+1	reviewed	missense	c.1546	p.S516P	0.006	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
DNALI1	7802	genome.wustl.edu	36	1	37799791	37799791	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	37799791	37799791	G	A	SNP	DNALI1	NM_003462	human	genbank	54_36p	+1	reviewed	silent	c.510	p.L170	1.000	HMMPfam_Ax_dynein_light	HMMPfam_Ax_dynein_light	-	no_errors
RPLP0-like	220717	genome.wustl.edu	36	2	38562504	38562504	+	RNA	SNP	G	G	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	2	38562504	38562504	G	T	SNP	RPLP0-like	XR_017813	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
THUMPD2	80745	genome.wustl.edu	36	2	39846728	39846728	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	2	39846728	39846728	T	C	SNP	THUMPD2	NM_025264	human	genbank	54_36p	-1	provisional	missense	c.686	p.Y229C	1.000	HMMPfam_THUMP	HMMPfam_THUMP,HMMPfam_UPF0020,superfamily_SSF53335	-	no_errors
C19orf15	57828	genome.wustl.edu	36	19	43552534	43552534	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	19	43552534	43552534	G	T	SNP	C19orf15	NM_021185	human	genbank	54_36p	+1	validated	missense	c.2023	p.V675L	1.000	NULL	NULL	-	no_errors
LOC653436	653436	genome.wustl.edu	36	9	44050507	44050507	+	RNA	SNP	T	T	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	9	44050507	44050507	T	C	SNP	LOC653436	XR_042306	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.072	-	-	-	pseudogene
ARID2	196528	genome.wustl.edu	36	12	44531990	44531990	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	12	44531990	44531990	C	A	SNP	ARID2	NM_152641	human	genbank	54_36p	+1	validated	silent	c.3817	p.R1273	1.000	NULL	"HMMPfam_ARID,superfamily_ARID-like,HMMSmart_SM00501,superfamily_""Winged helix"" DNA-binding domain,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ENSG00000204813	0	genome.wustl.edu	36	9	44814142	44814142	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	9	44814142	44814142	G	T	SNP	ENSG00000204813	ENST00000377544	human	ensembl	54_36p	+1	known	missense	c.139	p.A47S	0.000	NULL	NULL	-	no_start_codon:no_stop_codon
CELSR1	9620	genome.wustl.edu	36	22	45151652	45151652	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	22	45151652	45151652	G	T	SNP	CELSR1	NM_014246	human	genbank	54_36p	-1	reviewed	missense	c.7554	p.F2518L	0.995	HMMPfam_7tm_2	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
CYP2B6	1555	genome.wustl.edu	36	19	46201808	46201808	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	19	46201808	46201808	G	C	SNP	CYP2B6	NM_000767	human	genbank	54_36p	+1	reviewed	silent	c.234	p.L78	0.040	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
PREX1	57580	genome.wustl.edu	36	20	46702611	46702611	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	20	46702611	46702611	T	A	SNP	PREX1	NM_020820	human	genbank	54_36p	-1	reviewed	missense	c.2387	p.Q796L	1.000	superfamily_PDZ domain-like	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP,superfamily_PDZ domain-like,HMMSmart_SM00228"	-	no_errors
MKNK1	8569	genome.wustl.edu	36	1	46806722	46806722	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	46806722	46806722	A	G	SNP	MKNK1	NM_003684	human	genbank	54_36p	-1	validated	silent	c.652	p.L218	0.993	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
CELSR3	1951	genome.wustl.edu	36	3	48652420	48652420	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	3	48652420	48652420	C	T	SNP	CELSR3	NM_001407	human	genbank	54_36p	-1	reviewed	missense	c.9602	p.R3201Q	1.000	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
WDR6	11180	genome.wustl.edu	36	3	49027675	49027675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	3	49027675	49027675	C	T	SNP	WDR6	NM_018031	human	genbank	54_36p	+1	reviewed	missense	c.3316	p.R1106C	0.970	NULL	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
CPT1B	1375	genome.wustl.edu	36	22	49359802	49359802	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	22	49359802	49359802	C	G	SNP	CPT1B	NM_004377	human	genbank	54_36p	-1	reviewed	missense	c.871	p.E291Q	0.995	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2	-	no_errors
COBL	23242	genome.wustl.edu	36	7	51228708	51228708	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	7	51228708	51228708	T	C	SNP	COBL	NM_015198	human	genbank	54_36p	-1	validated	silent	c.318	p.E106	0.971	HMMPfam_Cobl	HMMPfam_Cobl,HMMPfam_WH2,HMMSmart_SM00246	-	no_errors
CCDC155	147872	genome.wustl.edu	36	19	54612309	54612309	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	19	54612309	54612309	G	T	SNP	CCDC155	NM_144688	human	genbank	54_36p	+1	provisional	missense	c.1521	p.Q507H	0.456	NULL	NULL	-	no_errors
SILV	6490	genome.wustl.edu	36	12	54637114	54637114	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	12	54637114	54637114	T	C	SNP	SILV	NM_006928	human	genbank	54_36p	-1	validated	missense	c.1240	p.T414A	0.987	NULL	superfamily_PKD domain,HMMPfam_PKD,HMMSmart_SM00089	-	no_errors
LYPLA1	10434	genome.wustl.edu	36	8	55126206	55126206	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	8	55126206	55126206	C	A	SNP	LYPLA1	NM_006330	human	genbank	54_36p	-1	reviewed	silent	c.558	p.V186	0.213	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_2	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_2	-	no_errors
OR5B17	219965	genome.wustl.edu	36	11	57882969	57882969	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	11	57882969	57882969	G	T	SNP	OR5B17	NM_001005489	human	genbank	54_36p	-1	provisional	missense	c.150	p.D50E	0.009	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ELOVL7	79993	genome.wustl.edu	36	5	60095881	60095881	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	5	60095881	60095881	C	T	SNP	ELOVL7	NM_001104558	human	genbank	54_36p	-1	validated	silent	c.429	p.V143	1.000	HMMPfam_ELO,PatternScan_ELO	HMMPfam_ELO,PatternScan_ELO	-	no_errors
BICC1	80114	genome.wustl.edu	36	10	60219143	60219143	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	10	60219143	60219143	T	A	SNP	BICC1	NM_001080512	human	genbank	54_36p	+1	provisional	missense	c.716	p.V239E	0.999	NULL	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1,HMMSmart_SM00454,HMMPfam_SAM_1,superfamily_SAM/Pointed domain	-	no_errors
PTPRH	5794	genome.wustl.edu	36	19	60407219	60407219	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	19	60407219	60407219	G	T	SNP	PTPRH	NM_002842	human	genbank	54_36p	-1	reviewed	missense	c.629	p.P210Q	0.000	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
FLJ37543	285668	genome.wustl.edu	36	5	61018552	61018552	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	5	61018552	61018552	G	C	SNP	FLJ37543	NM_173667	human	genbank	54_36p	+1	validated	missense	c.123	p.E41D	0.000	NULL	NULL	-	no_errors
AHNAK	79026	genome.wustl.edu	36	11	62049531	62049531	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	11	62049531	62049531	C	T	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	silent	c.8934	p.K2978	0.675	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_CheC	-	no_errors
TTPA	7274	genome.wustl.edu	36	8	64141193	64141193	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	8	64141193	64141193	C	T	SNP	TTPA	NM_000370	human	genbank	54_36p	-1	validated	missense	c.376	p.V126I	0.987	HMMPfam_CRAL_TRIO,superfamily_CRAL_TRIO_C,HMMSmart_SEC14	superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N,HMMPfam_CRAL_TRIO,superfamily_CRAL_TRIO_C,HMMSmart_SEC14	-	no_errors
THAP11	57215	genome.wustl.edu	36	16	66434330	66434330	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	16	66434330	66434330	G	C	SNP	THAP11	NM_020457	human	genbank	54_36p	+1	reviewed	missense	c.372	p.Q124H	0.989	NULL	HMMPfam_THAP,HMMSmart_DM3	-	no_errors
DIRAS3	9077	genome.wustl.edu	36	1	68285510	68285510	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	68285510	68285510	A	T	SNP	DIRAS3	NM_004675	human	genbank	54_36p	-1	reviewed	missense	c.59	p.L20Q	0.005	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00174,HMMPfam_Ras	-	no_errors
PGM5	5239	genome.wustl.edu	36	9	70334368	70334368	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	9	70334368	70334368	G	A	SNP	PGM5	NM_021965	human	genbank	54_36p	+1	validated	silent	c.1680	p.R560	1.000	superfamily_Phosphoglucomutase C-terminal domain	superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I,PatternScan_PGM_PMM,PatternScan_TRYPSIN_HIS,HMMPfam_PGM_PMM_II,HMMPfam_PGM_PMM_III,superfamily_Phosphoglucomutase C-terminal domain,HMMPfam_PGM_PMM_IV	-	no_errors
STRA6	64220	genome.wustl.edu	36	15	72275419	72275419	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	15	72275419	72275419	G	A	SNP	STRA6	NM_022369	human	genbank	54_36p	-1	reviewed	missense	c.389	p.A130V	0.001	NULL	NULL	-	no_errors
NDST2	8509	genome.wustl.edu	36	10	75232287	75232287	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	10	75232287	75232287	C	A	SNP	NDST2	NM_003635	human	genbank	54_36p	-1	reviewed	missense	c.2580	p.K860N	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors
EIF4A3	9775	genome.wustl.edu	36	17	75726622	75726622	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	17	75726622	75726622	C	T	SNP	EIF4A3	NM_014740	human	genbank	54_36p	-1	reviewed	missense	c.781	p.E261K	1.000	superfamily_SSF52540	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors
LOC440015	0	genome.wustl.edu	36	3	75801663	75801663	+	RNA	SNP	T	T	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	3	75801663	75801663	T	G	SNP	LOC440015	XR_015234	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.092	-	-	-	no_errors
SH2D7	0	genome.wustl.edu	36	15	76177907	76177907	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	15	76177907	76177907	T	G	SNP	SH2D7	NM_001101404	human	genbank	54_36p	+1	provisional	missense	c.559	p.S187A	0.009	NULL	HMMSmart_SH2,superfamily_SSF55550,HMMPfam_SH2	-	no_errors
C12orf64	283310	genome.wustl.edu	36	12	79174246	79174246	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	12	79174246	79174246	A	C	SNP	C12orf64	ENST00000298820	human	ensembl	54_36p	+1	known	splice_site	c.1-2	e1-2	0.996	-	-	-	no_errors
FGF5	2250	genome.wustl.edu	36	4	81407304	81407304	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	4	81407304	81407304	T	G	SNP	FGF5	NM_004464	human	genbank	54_36p	+1	reviewed	missense	c.302	p.L101R	1.000	superfamily_Cytokine,HMMSmart_SM00442,HMMPfam_FGF	superfamily_Cytokine,HMMSmart_SM00442,HMMPfam_FGF,PatternScan_HBGF_FGF	-	no_errors
CACNA2D1	781	genome.wustl.edu	36	7	81431351	81431351	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	7	81431351	81431351	C	A	SNP	CACNA2D1	NM_000722	human	genbank	54_36p	-1	reviewed	missense	c.2737	p.A913S	1.000	NULL	HMMPfam_VWA_N,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_Cache_1,HMMPfam_VGCC_alpha2	-	no_errors
FABP12	0	genome.wustl.edu	36	8	82606077	82606077	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	8	82606077	82606077	T	A	SNP	FABP12	NM_001105281	human	genbank	54_36p	-1	provisional	missense	c.29	p.K10M	0.991	superfamily_Lipocalins,HMMPfam_Lipocalin	superfamily_Lipocalins,HMMPfam_Lipocalin	-	no_errors
SLC6A15	55117	genome.wustl.edu	36	12	83791147	83791147	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	12	83791147	83791147	A	C	SNP	SLC6A15	NM_182767	human	genbank	54_36p	-1	validated	missense	c.959	p.F320C	1.000	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
AKAP13	11214	genome.wustl.edu	36	15	84060074	84060074	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	15	84060074	84060074	C	T	SNP	AKAP13	NM_006738	human	genbank	54_36p	+1	reviewed	missense	c.5663	p.T1888I	0.009	NULL	superfamily_ANK,HMMPfam_RII_binding_1,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,PatternScan_EF_HAND_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH	-	no_errors
AEN	64782	genome.wustl.edu	36	15	86973522	86973522	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	15	86973522	86973522	C	T	SNP	AEN	NM_022767	human	genbank	54_36p	+1	validated	missense	c.602	p.A201V	1.000	superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T	superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	92255955	92255955	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	11	92255955	92255955	C	A	SNP	FAT3	NM_001008781	human	genbank	54_36p	+1	validated	missense	c.12685	p.Q4229K	1.000	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
BTBD7	55727	genome.wustl.edu	36	14	92779101	92779101	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	14	92779101	92779101	C	T	SNP	BTBD7	NM_001002860	human	genbank	54_36p	-1	validated	silent	c.2670	p.E890	0.990	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK	-	no_errors
LOC90499	90499	genome.wustl.edu	36	2	94787893	94787893	+	RNA	SNP	G	A	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	2	94787893	94787893	G	A	SNP	LOC90499	XR_042127	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
C10orf129	142827	genome.wustl.edu	36	10	96961690	96961690	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	10	96961690	96961690	T	C	SNP	C10orf129	NM_207321	human	genbank	54_36p	+1	validated	missense	c.356	p.L119S	0.949	HMMPfam_AMP-binding,superfamily_SSF56801	HMMPfam_AMP-binding,superfamily_SSF56801	-	no_errors
ZNF518	9849	genome.wustl.edu	36	10	97906751	97906751	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	10	97906751	97906751	A	T	SNP	ZNF518	ENST00000371192	human	ensembl	54_36p	+1	known	nonsense	c.682	p.R228*	1.000	HMMSmart_SM00355	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
OR5K4	403278	genome.wustl.edu	36	3	99555699	99555699	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	3	99555699	99555699	C	A	SNP	OR5K4	NM_001005517	human	genbank	54_36p	+1	provisional	silent	c.312	p.L104	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PCCA	5095	genome.wustl.edu	36	13	99751817	99751817	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	13	99751817	99751817	C	A	SNP	PCCA	NM_000282	human	genbank	54_36p	+1	reviewed	missense	c.1168	p.R390S	1.000	HMMPfam_CPSase_L_D2,superfamily_SSF56059	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like,HMMPfam_CPSase_L_D2,superfamily_SSF56059,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Rudmnt_hyb_motif,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN	-	no_errors
MUC17	140453	genome.wustl.edu	36	7	100469768	100469768	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	7	100469768	100469768	C	A	SNP	MUC17	NM_001040105	human	genbank	54_36p	+1	provisional	missense	c.8351	p.T2784N	0.000	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
OLFM3	118427	genome.wustl.edu	36	1	102234946	102234946	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	102234946	102234946	G	C	SNP	OLFM3	NM_058170	human	genbank	54_36p	-1	validated	silent	c.15	p.S5	1.000	NULL	HMMPfam_OLF,HMMSmart_SM00284	-	no_errors
ZBTB11	27107	genome.wustl.edu	36	3	102852738	102852738	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	3	102852738	102852738	C	G	SNP	ZBTB11	NM_014415	human	genbank	54_36p	-1	validated	missense	c.3124	p.V1042L	1.000	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
CKAP4	10970	genome.wustl.edu	36	12	105157553	105157553	+	Silent	SNP	C	A	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	12	105157553	105157553	C	A	SNP	CKAP4	NM_006825	human	genbank	54_36p	-1	validated	silent	c.1188	p.S396	0.000	NULL	NULL	-	no_errors
ACACB	32	genome.wustl.edu	36	12	108102234	108102234	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	12	108102234	108102234	G	T	SNP	ACACB	NM_001093	human	genbank	54_36p	+1	reviewed	nonsense	c.1777	p.E593*	0.998	superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_CPSase_L_D2	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain,superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Rudiment single hybrid motif,HMMPfam_Biotin_carb_C,superfamily_Single hybrid motif,HMMPfam_Biotin_lipoyl,HMMPfam_ACC_central,superfamily_ClpP/crotonase,HMMPfam_Carboxyl_trans	-	no_errors
KRT18P42	391819	genome.wustl.edu	36	5	108952555	108952555	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	5	108952555	108952555	C	T	SNP	KRT18P42	XR_016386	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
RGAG1	57529	genome.wustl.edu	36	X	109582943	109582943	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	X	109582943	109582943	T	C	SNP	RGAG1	NM_020769	human	genbank	54_36p	+1	provisional	silent	c.2442	p.A814	0.055	NULL	HMMPfam_Retrotrans_gag	-	no_errors
ZBTB24	9841	genome.wustl.edu	36	6	109903338	109903338	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	6	109903338	109903338	G	A	SNP	ZBTB24	NM_014797	human	genbank	54_36p	-1	provisional	silent	c.1245	p.F415	1.000	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_AT_hook,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
TFDP1	7027	genome.wustl.edu	36	13	113338297	113338297	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	13	113338297	113338297	T	G	SNP	TFDP1	NM_007111	human	genbank	54_36p	+1	reviewed	missense	c.692	p.I231S	1.000	HMMPfam_DP	HMMPfam_E2F_TDP,superfamily_SSF46785,HMMPfam_DP	-	no_errors
PSD4	23550	genome.wustl.edu	36	2	113656750	113656750	+	Silent	SNP	C	T	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	2	113656750	113656750	C	T	SNP	PSD4	NM_012455	human	genbank	54_36p	+1	validated	silent	c.246	p.D82	0.248	NULL	HMMPfam_Sec7,superfamily_Sec7 domain,HMMSmart_SM00222,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
ANK2	287	genome.wustl.edu	36	4	114493895	114493895	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	4	114493895	114493895	G	T	SNP	ANK2	NM_001148	human	genbank	54_36p	+1	reviewed	missense	c.4672	p.D1558Y	1.000	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
PCDHA6	56142	genome.wustl.edu	36	5	140188149	140188149	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	5	140188149	140188149	G	C	SNP	PCDHA6	NM_018909	human	genbank	54_36p	+1	reviewed	missense	c.289	p.G97R	0.878	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
TCERG1	10915	genome.wustl.edu	36	5	145842412	145842412	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	5	145842412	145842412	G	A	SNP	TCERG1	NM_006706	human	genbank	54_36p	+1	reviewed	missense	c.1951	p.A651T	1.000	superfamily_FF domain	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_FF domain,HMMSmart_SM00441,HMMPfam_FF	-	no_errors
MAGEA11	4110	genome.wustl.edu	36	X	148576801	148576801	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	X	148576801	148576801	G	C	SNP	MAGEA11	NM_005366	human	genbank	54_36p	-1	reviewed	missense	c.458	p.S153C	0.017	NULL	HMMPfam_MAGE	-	no_errors
ENSG00000197558	0	genome.wustl.edu	36	7	149123696	149123696	+	Silent	SNP	C	T	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	7	149123696	149123696	C	T	SNP	ENSG00000197558	ENST00000262089	human	ensembl	54_36p	+1	novel	silent	c.3567	p.P1189	0.000	NULL	HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00214,HMMPfam_VWC,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C	-	no_start_codon
PSMB4	5692	genome.wustl.edu	36	1	149638747	149638747	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	149638747	149638747	G	C	SNP	PSMB4	NM_002796	human	genbank	54_36p	+1	reviewed	missense	c.60	p.Q20H	0.998	NULL	superfamily_SSF56235,HMMPfam_Proteasome,PatternScan_PROTEASOME_B	-	no_errors
HRNR	388697	genome.wustl.edu	36	1	150459655	150459655	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	150459655	150459655	G	A	SNP	HRNR	NM_001009931	human	genbank	54_36p	-1	validated	silent	c.1074	p.S358	0.000	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
CD1D	912	genome.wustl.edu	36	1	156417914	156417914	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	156417914	156417914	T	A	SNP	CD1D	NM_001766	human	genbank	54_36p	+1	reviewed	missense	c.107	p.F36Y	0.015	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1	-	no_errors
OR10R2	343406	genome.wustl.edu	36	1	156717175	156717175	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	156717175	156717175	C	T	SNP	OR10R2	NM_001004472	human	genbank	54_36p	+1	provisional	missense	c.884	p.T295M	0.001	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SPTA1	6708	genome.wustl.edu	36	1	156876336	156876336	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	156876336	156876336	C	G	SNP	SPTA1	NM_003126	human	genbank	54_36p	-1	reviewed	missense	c.4823	p.R1608P	1.000	HMMPfam_Spectrin	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMPfam_efhand_Ca_insen	-	no_errors
ADAM19	8728	genome.wustl.edu	36	5	156879472	156879472	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	5	156879472	156879472	C	T	SNP	ADAM19	NM_033274	human	genbank	54_36p	-1	reviewed	missense	c.553	p.D185N	0.945	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_2"	-	no_errors
TAGAP	117289	genome.wustl.edu	36	6	159381791	159381791	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	6	159381791	159381791	C	A	SNP	TAGAP	NM_054114	human	genbank	54_36p	-1	reviewed	missense	c.539	p.G180V	0.388	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
RGS16	6004	genome.wustl.edu	36	1	180836098	180836098	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	180836098	180836098	G	A	SNP	RGS16	NM_002928	human	genbank	54_36p	-1	reviewed	silent	c.561	p.A187	0.011	superfamily_Regulator of G-protein signaling RGS	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	-	no_errors
COL5A2	1290	genome.wustl.edu	36	2	189629951	189629951	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	2	189629951	189629951	C	T	SNP	COL5A2	NM_000393	human	genbank	54_36p	-1	reviewed	missense	c.2384	p.G795D	1.000	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI	-	no_errors
LOC200726	200726	genome.wustl.edu	36	2	207217577	207217577	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	2	207217577	207217577	A	C	SNP	LOC200726	NM_001102659	human	genbank	54_36p	+1	predicted	missense	c.372	p.K124N	0.631	NULL	NULL	-	no_errors
PTH2R	5746	genome.wustl.edu	36	2	209066506	209066506	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	2	209066506	209066506	C	A	SNP	PTH2R	NM_005048	human	genbank	54_36p	+1	reviewed	missense	c.1530	p.H510Q	0.000	NULL	superfamily_SSF111418,HMMSmart_HormR,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_SSF81321,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
STK36	27148	genome.wustl.edu	36	2	219270101	219270101	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	2	219270101	219270101	G	C	SNP	STK36	NM_015690	human	genbank	54_36p	+1	validated	missense	c.2682	p.E894D	0.150	superfamily_ARM repeat	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
SUSD4	55061	genome.wustl.edu	36	1	221469292	221469292	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	221469292	221469292	C	A	SNP	SUSD4	NM_017982	human	genbank	54_36p	-1	validated	missense	c.786	p.E262D	0.878	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
GIGYF2	26058	genome.wustl.edu	36	2	233363767	233363767	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	2	233363767	233363767	G	C	SNP	GIGYF2	NM_001103147	human	genbank	54_36p	+1	validated	silent	c.894	p.G298	0.997	NULL	superfamily_GYF,HMMPfam_GYF,HMMSmart_GYF	-	no_errors
OTOA	146183	genome.wustl.edu	36	16	21641722	21641731	+	Splice_Site	DEL	TTCAGGTTAA	TTCAGGTTAA	-	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	TTCAGGTTAA	TTCAGGTTAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	16	21641722	21641731	TTCAGGTTAA	-	DEL	OTOA	NM_144672	human	genbank	54_36p	+1	provisional	splice_site_del	c.1807-5_1807-1	e17-1	0.994:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999	-	-	(deletion:intron[21638327,21641726], cds_exon[21641727,21641800])	no_errors
HECW1	23072	genome.wustl.edu	36	7	43451626	43451648	+	Frame_Shift_Del	DEL	GCGGGCACGTGGAAAGAAGCCCG	GCGGGCACGTGGAAAGAAGCCCG	-	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	GCGGGCACGTGGAAAGAAGCCCG	GCGGGCACGTGGAAAGAAGCCCG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	7	43451626	43451648	GCGGGCACGTGGAAAGAAGCCCG	-	DEL	HECW1	NM_015052	human	genbank	54_36p	+1	validated	frame_shift_del	c.2330_2352	p.S777fs	0.000:0.001:0.161:0.142:0.047:0.046:0.033:0.015:0.001:0.000:0.001:0.002:0.003:0.000:0.001:0.001:0.001:0.004:0.005:0.003:0.010:0.001:0.001	NULL	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	(deletion:cds_exon[43450342,43451694])	no_errors
MAPK8IP2	23542	genome.wustl.edu	36	22	49388561	49388583	+	Frame_Shift_Del	DEL	GCTCCTTCCAGGATGACTTCCAG	GCTCCTTCCAGGATGACTTCCAG	-	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	GCTCCTTCCAGGATGACTTCCAG	GCTCCTTCCAGGATGACTTCCAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	22	49388561	49388583	GCTCCTTCCAGGATGACTTCCAG	-	DEL	MAPK8IP2	ENST00000329492	human	ensembl	54_36p	+1	known	frame_shift_del	c.215_237	p.C72fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID	(deletion:cds_exon[49388518,49388793])	no_errors
ZCCHC12	170261	genome.wustl.edu	36	X	117844234	117844278	+	In_Frame_Del	DEL	GGAGATGCGTAGAGCCAGGAAGCGAAAACACACAATCCGCTGTTC	GGAGATGCGTAGAGCCAGGAAGCGAAAACACACAATCCGCTGTTC	-	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	GGAGATGCGTAGAGCCAGGAAGCGAAAACACACAATCCGCTGTTC	GGAGATGCGTAGAGCCAGGAAGCGAAAACACACAATCCGCTGTTC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	X	117844234	117844278	GGAGATGCGTAGAGCCAGGAAGCGAAAACACACAATCCGCTGTTC	-	DEL	ZCCHC12	NM_173798	human	genbank	54_36p	+1	provisional	in_frame_del	c.999_1043	p.EMRRARKRKHTIRCS334in_frame_del	0.000:0.000:0.002:0.001:0.003:0.253:0.536:0.602:0.666:0.718:0.777:0.794:0.790:0.764:0.774:0.917:0.958:0.970:0.979:0.980:0.975:0.958:0.937:0.863:0.549:0.523:0.429:0.112:0.011:0.008:0.005:0.005:0.007:0.005:0.006:0.011:0.011:0.015:0.030:0.047:0.064:0.068:0.058:0.059:0.051	NULL	NULL	(deletion:cds_exon[117843236,117844444])	no_errors
BGLAP	632	genome.wustl.edu	36	1	154478982	154478982	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	154478982	154478982	G	-	DEL	BGLAP	NM_199173	human	genbank	54_36p	+1	validated	frame_shift_del	c.79	p.G27fs	0.000	NULL	HMMSmart_SM00069,HMMPfam_Gla,superfamily_GLA-domain,PatternScan_GLA_1	(deletion:cds_exon[154478968,154479006])	no_errors
ATP2B4	493	genome.wustl.edu	36	1	201956310	201956320	+	Frame_Shift_Del	DEL	GCACAGATGTA	GCACAGATGTA	-	novel	unknown	TCGA-29-1763-01A-02W-0633-09	TCGA-29-1763-10A-01W-0633-09	GCACAGATGTA	GCACAGATGTA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	81332463-a84e-4215-a4f4-c4e974a6f7bb	8a8b35ee-32bf-47dc-8fd8-7d0e97dd7b57	1	201956310	201956320	GCACAGATGTA	-	DEL	ATP2B4	NM_001684	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.2417_2427	p.T807fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996:0.620	superfamily_Calcium ATPase transmembrane domain M,superfamily_HAD-like	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,HMMPfam_Hydrolase,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	(deletion:cds_exon[201956300,201956491])	no_errors
