Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ND5	4540	genome.wustl.edu	36	MT	14012	14012	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	MT	14012	14012	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	missense	c.1675	p.E559K	NULL	HMMPfam_NADH5_C	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
EXOC3	11336	genome.wustl.edu	36	5	507059	507059	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	5	507059	507059	C	G	SNP	EXOC3	NM_007277	human	genbank	54_36p	+1	reviewed	missense	c.939	p.N313K	0.412	HMMPfam_Sec6	HMMPfam_Sec6	-	no_errors
KCNV2	169522	genome.wustl.edu	36	9	2708278	2708278	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	9	2708278	2708278	G	C	SNP	KCNV2	NM_133497	human	genbank	54_36p	+1	reviewed	missense	c.539	p.R180P	1.000	superfamily_BTB/POZ_fold,HMMPfam_K_tetra	superfamily_BTB/POZ_fold,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-	no_errors
OLFML1	283298	genome.wustl.edu	36	11	7465962	7465962	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	11	7465962	7465962	C	T	SNP	OLFML1	NM_198474	human	genbank	54_36p	+1	provisional	missense	c.158	p.T53M	0.993	NULL	HMMPfam_OLF,HMMSmart_SM00284	-	no_errors
MYH3	4621	genome.wustl.edu	36	17	10482285	10482285	+	Silent	SNP	T	T	G	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	17	10482285	10482285	T	G	SNP	MYH3	NM_002470	human	genbank	54_36p	-1	reviewed	silent	c.3529	p.R1177	0.771	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
PRAMEF7	441871	genome.wustl.edu	36	1	12902727	12902727	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	1	12902727	12902727	G	A	SNP	PRAMEF7	NM_001012277	human	genbank	54_36p	+1	provisional	silent	c.1332	p.R444	0.000	NULL	superfamily_RNI-like	-	no_errors
WIZ	58525	genome.wustl.edu	36	19	15420002	15420002	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	19	15420002	15420002	C	A	SNP	WIZ	NM_021241	human	genbank	54_36p	-1	validated	silent	c.117	p.G39	0.998	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
BASP1	10409	genome.wustl.edu	36	5	17328538	17328538	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	5	17328538	17328538	C	T	SNP	BASP1	NM_006317	human	genbank	54_36p	+1	reviewed	silent	c.213	p.G71	0.957	HMMPfam_BASP1	HMMPfam_BASP1	-	no_errors
ZNF626	199777	genome.wustl.edu	36	19	20600270	20600270	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	19	20600270	20600270	G	T	SNP	ZNF626	NM_001076675	human	genbank	54_36p	-1	validated	missense	c.253	p.L85I	0.001	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
EPHB2	2048	genome.wustl.edu	36	1	22983580	22983580	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	1	22983580	22983580	C	T	SNP	EPHB2	NM_004442	human	genbank	54_36p	+1	reviewed	missense	c.235	p.R79W	1.000	superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd	superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_1	-	no_errors
GGT1	2678	genome.wustl.edu	36	22	23341040	23341040	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	22	23341040	23341040	G	A	SNP	GGT1	NM_001032364	human	genbank	54_36p	+1	reviewed	missense	c.328	p.A110T	1.000	HMMPfam_G_glu_transpept	HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE	-	no_errors
ITSN2	50618	genome.wustl.edu	36	2	24286388	24286388	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	2	24286388	24286388	G	C	SNP	ITSN2	NM_006277	human	genbank	54_36p	-1	reviewed	missense	c.4273	p.L1425V	1.000	superfamily_PH domain-like	superfamily_EF-hand,HMMSmart_SM00027,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1,HMMPfam_SH3_2,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
EVI2A	2123	genome.wustl.edu	36	17	26669496	26669496	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	17	26669496	26669496	C	A	SNP	EVI2A	NM_001003927	human	genbank	54_36p	-1	validated	missense	c.731	p.R244I	0.540	HMMPfam_EVI2A	HMMPfam_EVI2A	-	no_errors
HIST1H2BK	85236	genome.wustl.edu	36	6	27222203	27222203	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	6	27222203	27222203	G	A	SNP	HIST1H2BK	NM_080593	human	genbank	54_36p	-1	reviewed	silent	c.354	p.A118	1.000	superfamily_Histone-fold,HMMSmart_SM00427	superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B	-	no_errors
CCDC34	91057	genome.wustl.edu	36	11	27316945	27316945	+	Nonstop_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	11	27316945	27316945	T	A	SNP	CCDC34	NM_030771	human	genbank	54_36p	-1	validated	nonstop	c.1121	p.*374L	0.952	NULL	NULL	-	no_errors
LOC387646	387646	genome.wustl.edu	36	10	27578384	27578384	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	10	27578384	27578384	G	A	SNP	LOC387646	NR_003525	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.621	-	-	-	pseudogene
HIST1H4K	8362	genome.wustl.edu	36	6	27907037	27907037	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	6	27907037	27907037	G	T	SNP	HIST1H4K	NM_003541	human	genbank	54_36p	-1	reviewed	missense	c.248	p.T83N	1.000	superfamily_Histone-fold,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803	superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803	-	no_errors
OR2J2	26707	genome.wustl.edu	36	6	29250113	29250113	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	6	29250113	29250113	C	T	SNP	OR2J2	NM_030905	human	genbank	54_36p	+1	validated	missense	c.722	p.T241I	0.964	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DTNA	1837	genome.wustl.edu	36	18	30646008	30646008	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	18	30646008	30646008	C	G	SNP	DTNA	NM_001390	human	genbank	54_36p	+1	reviewed	missense	c.536	p.T179R	0.988	superfamily_EF-hand,HMMPfam_efhand_2	superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1	-	no_errors
CCL4	6351	genome.wustl.edu	36	17	31455455	31455455	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	17	31455455	31455455	C	T	SNP	CCL4	NM_002984	human	genbank	54_36p	+1	validated	missense	c.44	p.A15V	0.950	NULL	HMMPfam_IL8,superfamily_Chemokine_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CC	-	no_errors
SLC39A7	7922	genome.wustl.edu	36	6	33279464	33279464	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	6	33279464	33279464	T	G	SNP	SLC39A7	NM_001077516	human	genbank	54_36p	+1	validated	missense	c.1306	p.L436V	0.997	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
LOC100128841	0	genome.wustl.edu	36	11	35945776	35945776	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	11	35945776	35945776	G	A	SNP	LOC100128841	XR_039189	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.002	-	-	-	pseudogene
TSHZ3	57616	genome.wustl.edu	36	19	36462040	36462040	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	19	36462040	36462040	A	C	SNP	TSHZ3	NM_020856	human	genbank	54_36p	-1	validated	missense	c.499	p.W167G	1.000	NULL	PatternScan_HOMEOBOX_1,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
KRT17	3872	genome.wustl.edu	36	17	37030804	37030804	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	17	37030804	37030804	G	A	SNP	KRT17	NM_000422	human	genbank	54_36p	-1	reviewed	silent	c.900	p.I300	1.000	HMMPfam_Filament,superfamily_Prefoldin	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
CYBB	1536	genome.wustl.edu	36	X	37548108	37548108	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	X	37548108	37548108	A	G	SNP	CYBB	NM_000397	human	genbank	54_36p	+1	reviewed	missense	c.932	p.Q311R	1.000	superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_8	HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_8,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_6	-	no_errors
RAB11FIP1	80223	genome.wustl.edu	36	8	37839604	37839604	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	8	37839604	37839604	C	T	SNP	RAB11FIP1	NM_001002814	human	genbank	54_36p	-1	validated	silent	c.3819	p.P1273	0.000	HMMPfam_RBD-FIP	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_RBD-FIP	-	no_errors
SCN5A	6331	genome.wustl.edu	36	3	38649645	38649645	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	3	38649645	38649645	C	T	SNP	SCN5A	NM_001099404	human	genbank	54_36p	-1	reviewed	missense	c.158	p.R53Q	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ	-	no_errors
PLCD3	113026	genome.wustl.edu	36	17	40549546	40549546	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	17	40549546	40549546	G	C	SNP	PLCD3	ENST00000322765	human	ensembl	54_36p	-1	known	silent	c.1392	p.P464	0.000	HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases	superfamily_PH domain-like,HMMSmart_SM00233,superfamily_EF-hand,PatternScan_EF_HAND_1,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
PWP2	5822	genome.wustl.edu	36	21	44372568	44372568	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	21	44372568	44372568	C	T	SNP	PWP2	NM_005049	human	genbank	54_36p	+1	validated	missense	c.2372	p.T791I	0.995	HMMPfam_PWP2	superfamily_Peptidase_S9A_N,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_PWP2	-	no_errors
KRTAP10-10	353333	genome.wustl.edu	36	21	44882010	44882010	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	21	44882010	44882010	A	C	SNP	KRTAP10-10	NM_181688	human	genbank	54_36p	+1	provisional	missense	c.248	p.D83A	0.020	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
FCGBP	8857	genome.wustl.edu	36	19	45060383	45060383	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	19	45060383	45060383	C	T	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	missense	c.12805	p.D4269N	0.001	NULL	HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC	-	no_errors
AKR1A1	10327	genome.wustl.edu	36	1	45808202	45808202	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	1	45808202	45808202	A	G	SNP	AKR1A1	NM_006066	human	genbank	54_36p	+1	reviewed	missense	c.965	p.N322S	1.000	superfamily_NAD(P)-linked oxidoreductase	superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_1,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3	-	no_errors
LOC387924	387924	genome.wustl.edu	36	13	48684414	48684414	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	13	48684414	48684414	G	A	SNP	LOC387924	XR_017443	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.015	-	-	-	pseudogene
KRT4	3851	genome.wustl.edu	36	12	51488866	51488866	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	12	51488866	51488866	C	T	SNP	KRT4	NM_002272	human	genbank	54_36p	-1	reviewed	silent	c.1092	p.T364	0.091	HMMPfam_Filament,superfamily_Prefoldin	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
TANC2	26115	genome.wustl.edu	36	17	58836301	58836301	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	17	58836301	58836301	C	T	SNP	TANC2	NM_025185	human	genbank	54_36p	+1	validated	nonsense	c.3196	p.R1066*	1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors
NLRP4	147945	genome.wustl.edu	36	19	61062337	61062337	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	19	61062337	61062337	C	A	SNP	NLRP4	NM_134444	human	genbank	54_36p	+1	validated	missense	c.1766	p.S589Y	0.273	superfamily_RNI-like	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
ZNF547	284306	genome.wustl.edu	36	19	62581590	62581590	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	19	62581590	62581590	G	C	SNP	ZNF547	ENST00000391704	human	ensembl	54_36p	+1	known	splice_site	c.1033-1	e4-1	0.012	-	-	-	no_errors
CDH11	1009	genome.wustl.edu	36	16	63563349	63563349	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	16	63563349	63563349	G	A	SNP	CDH11	NM_001797	human	genbank	54_36p	-1	reviewed	missense	c.1510	p.P504S	0.992	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
ZNF138	7697	genome.wustl.edu	36	7	63929878	63929878	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	7	63929878	63929878	G	C	SNP	ZNF138	NM_006524	human	genbank	54_36p	+1	provisional	missense	c.652	p.E218Q	1.000	superfamily_SSF57667	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
SPTB	6710	genome.wustl.edu	36	14	64330017	64330017	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	14	64330017	64330017	C	T	SNP	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	missense	c.2117	p.R706H	0.003	HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
LOC642236	642236	genome.wustl.edu	36	9	67945095	67945095	+	RNA	SNP	A	A	G	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	9	67945095	67945095	A	G	SNP	LOC642236	XR_041085	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.001	-	-	-	no_errors
TRPM3	80036	genome.wustl.edu	36	9	72925976	72925976	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	9	72925976	72925976	G	T	SNP	TRPM3	NM_001007471	human	genbank	54_36p	-1	reviewed	missense	c.115	p.L39I	1.000	NULL	HMMPfam_Ion_trans	-	no_errors
USP54	159195	genome.wustl.edu	36	10	74946730	74946730	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	10	74946730	74946730	T	C	SNP	USP54	NM_152586	human	genbank	54_36p	-1	provisional	missense	c.3460	p.S1154G	0.090	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH	-	no_errors
HOMER1	9456	genome.wustl.edu	36	5	78788577	78788577	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	5	78788577	78788577	G	A	SNP	HOMER1	NM_004272	human	genbank	54_36p	-1	validated	missense	c.26	p.T9I	1.000	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like	-	no_errors
LRRC8C	84230	genome.wustl.edu	36	1	89953048	89953048	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	1	89953048	89953048	G	C	SNP	LRRC8C	NM_032270	human	genbank	54_36p	+1	validated	silent	c.2331	p.L777	1.000	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors
MDN1	23195	genome.wustl.edu	36	6	90569826	90569826	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	6	90569826	90569826	G	A	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	missense	c.271	p.H91Y	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_vWA-like,HMMSmart_SM00327	-	no_errors
UNC5C	8633	genome.wustl.edu	36	4	96382645	96382645	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	4	96382645	96382645	C	T	SNP	UNC5C	NM_003728	human	genbank	54_36p	-1	reviewed	missense	c.1066	p.V356I	0.590	superfamily_TSP-1 type 1 repeat,HMMPfam_TSP_1,HMMSmart_SM00209	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors
GLRA4	0	genome.wustl.edu	36	X	102865801	102865801	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	X	102865801	102865801	G	A	SNP	GLRA4	NM_001024452	human	genbank	54_36p	-1	validated	missense	c.232	p.L78F	1.000	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors
AHNAK2	113146	genome.wustl.edu	36	14	104481753	104481753	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	14	104481753	104481753	C	A	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.11080	p.D3694Y	0.020	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_Involucrin	-	no_errors
AHCYL1	10768	genome.wustl.edu	36	1	110364959	110364959	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	1	110364959	110364959	C	A	SNP	AHCYL1	NM_006621	human	genbank	54_36p	+1	validated	missense	c.1549	p.L517I	1.000	superfamily_Formate/glycerate dehydrogenase catalytic domain-like,HMMPfam_AdoHcyase	superfamily_Formate/glycerate dehydrogenase catalytic domain-like,HMMPfam_AdoHcyase,PatternScan_ADOHCYASE_1,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_AdoHcyase_NAD,PatternScan_ADOHCYASE_2	-	no_errors
BUB1	699	genome.wustl.edu	36	2	111131595	111131595	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	2	111131595	111131595	C	T	SNP	BUB1	NM_004336	human	genbank	54_36p	-1	reviewed	splice_site	c.1616+1	e14+1	1.000	-	-	-	no_errors
HTR2C	3358	genome.wustl.edu	36	X	114047479	114047479	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	X	114047479	114047479	G	A	SNP	HTR2C	NM_000868	human	genbank	54_36p	+1	reviewed	missense	c.622	p.V208M	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
MED13L	23389	genome.wustl.edu	36	12	114891130	114891130	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	12	114891130	114891130	G	T	SNP	MED13L	NM_015335	human	genbank	54_36p	-1	validated	silent	c.6223	p.R2075	1.000	NULL	HMMPfam_TRAP_240kDa	-	no_errors
TECTA	7007	genome.wustl.edu	36	11	120489546	120489546	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	11	120489546	120489546	C	A	SNP	TECTA	NM_005422	human	genbank	54_36p	+1	reviewed	silent	c.699	p.I233	0.998	HMMSmart_SM00539,HMMPfam_NIDO	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00215,HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_FA58C_2,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1,superfamily_EGF/Laminin	-	no_errors
SAP130	79595	genome.wustl.edu	36	2	128473846	128473846	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	2	128473846	128473846	G	A	SNP	SAP130	NM_024545	human	genbank	54_36p	-1	validated	silent	c.1230	p.T410	1.000	NULL	NULL	-	no_errors
POTEF	728378	genome.wustl.edu	36	2	130588999	130588999	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	2	130588999	130588999	G	C	SNP	POTEF	NM_001099771	human	genbank	54_36p	-1	validated	nonsense	c.735	p.Y245*	0.972	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
MCM6	4175	genome.wustl.edu	36	2	136344380	136344380	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	2	136344380	136344380	C	G	SNP	MCM6	NM_005915	human	genbank	54_36p	-1	reviewed	silent	c.276	p.R92	0.851	superfamily_Nucleic acid-binding proteins	superfamily_Nucleic acid-binding proteins,HMMSmart_SM00350,HMMPfam_MCM,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_MCM_1	-	no_errors
PCDHA4	56144	genome.wustl.edu	36	5	140168321	140168321	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	5	140168321	140168321	C	T	SNP	PCDHA4	NM_018907	human	genbank	54_36p	+1	reviewed	silent	c.1365	p.F455	0.994	superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCDHB4	56131	genome.wustl.edu	36	5	140483233	140483233	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	5	140483233	140483233	T	C	SNP	PCDHB4	NM_018938	human	genbank	54_36p	+1	reviewed	missense	c.1469	p.L490P	0.978	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	-	no_errors
NEB	4703	genome.wustl.edu	36	2	152135290	152135290	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	2	152135290	152135290	C	A	SNP	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	missense	c.11982	p.Q3994H	0.513	HMMSmart_SM00227,HMMPfam_Nebulin	HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
WDR60	55112	genome.wustl.edu	36	7	158404322	158404322	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	7	158404322	158404322	G	T	SNP	WDR60	NM_018051	human	genbank	54_36p	+1	validated	splice_site	c.1921+1	e15+1	0.997	-	-	-	no_errors
MDS1	4197	genome.wustl.edu	36	3	170581689	170581689	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	3	170581689	170581689	C	A	SNP	MDS1	NM_004991	human	genbank	54_36p	-1	validated	missense	c.355	p.D119Y	1.000	NULL	NULL	-	no_errors
MPP4	58538	genome.wustl.edu	36	2	202248229	202248229	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	2	202248229	202248229	C	A	SNP	MPP4	NM_033066	human	genbank	54_36p	-1	reviewed	nonsense	c.940	p.E314*	1.000	superfamily_SH3-domain	HMMSmart_SM00569,HMMPfam_L27,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C	-	no_errors
VIL1	7429	genome.wustl.edu	36	2	219001259	219001259	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	2	219001259	219001259	C	T	SNP	VIL1	NM_007127	human	genbank	54_36p	+1	reviewed	silent	c.522	p.I174	1.000	superfamily_SSF55753,HMMSmart_GEL,HMMPfam_Gelsolin	superfamily_SSF55753,HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF82754,superfamily_VHP,HMMPfam_VHP,HMMSmart_VHP	-	no_errors
NADK	65220	genome.wustl.edu	36	1	1674207	1674208	+	In_Frame_Ins	INS	-	-	CCT	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	1	1674207	1674208	-	CCT	INS	NADK	NM_023018	human	genbank	54_36p	-1	validated	in_frame_ins	c.1337_1336	p.446in_frame_insE	0.003:0.004	NULL	superfamily_NAD kinase (Pfam 01513),HMMPfam_NAD_kinase	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517835	7517835	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	17	7517835	7517835	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.828	p.C277fs	0.999	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7517744,7517880])	no_errors
CTSA	5476	genome.wustl.edu	36	20	43953645	43953647	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	CTG	CTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	20	43953645	43953647	CTG	-	DEL	CTSA	NM_000308	human	genbank	54_36p	+1	reviewed	in_frame_del	c.85_87	p.L32in_frame_del	0.066:0.073:0.080	NULL	superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S10,PatternScan_CARBOXYPEPT_SER_SER,PatternScan_CARBOXYPEPT_SER_HIS	(deletion:cds_exon[43953615,43953808])	no_errors
C1orf87	127795	genome.wustl.edu	36	1	60278400	60278411	+	In_Frame_Del	DEL	GCGTCTTCATTT	GCGTCTTCATTT	-	novel	unknown	TCGA-29-1766-01A-01W-0633-09	TCGA-29-1766-10A-01W-0634-09	GCGTCTTCATTT	GCGTCTTCATTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	da224cfe-35a1-4cf6-aaae-9bd877783fa9	0dfa0588-b616-4c29-93c7-0088e3e92876	1	60278400	60278411	GCGTCTTCATTT	-	DEL	C1orf87	NM_152377	human	genbank	54_36p	-1	predicted	in_frame_del	c.524_513	p.NEDA172in_frame_del	0.046:0.014:0.015:0.126:0.139:0.153:0.155:0.124:0.051:0.038:0.038:0.035	NULL	superfamily_EF-hand	(deletion:cds_exon[60278177,60278440])	no_errors
