Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ENSG00000211459	0	genome.wustl.edu	36	MT	703	703	+	RNA	SNP	G	A	A	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	MT	703	703	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000210077	0	genome.wustl.edu	36	MT	1625	1625	+	RNA	SNP	G	A	A	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	MT	1625	1625	G	A	SNP	ENSG00000210077	ENST00000387342	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
MT-ND5	4540	genome.wustl.edu	36	MT	12540	12540	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	MT	12540	12540	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	nonsense	c.203	p.W68*	NULL	HMMPfam_Oxidored_q1_N	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
MT-ND5	4540	genome.wustl.edu	36	MT	12811	12811	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	MT	12811	12811	A	G	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	silent	c.474	p.W158	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519125	7519125	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	17	7519125	7519125	G	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.530	p.P177R	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
ADCY2	108	genome.wustl.edu	36	5	7679301	7679301	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	5	7679301	7679301	T	A	SNP	ADCY2	NM_020546	human	genbank	54_36p	+1	reviewed	missense	c.592	p.F198I	1.000	NULL	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors
FRMPD4	9758	genome.wustl.edu	36	X	12648822	12648822	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	X	12648822	12648822	A	G	SNP	FRMPD4	ENST00000304087	human	ensembl	54_36p	+1	known	missense	c.4192	p.S1398G	1.000	NULL	superfamily_WW_Rsp5_WWP,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41	-	no_start_codon
MLL4	9757	genome.wustl.edu	36	19	40910354	40910354	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	19	40910354	40910354	C	G	SNP	MLL4	NM_014727	human	genbank	54_36p	+1	reviewed	missense	c.4292	p.S1431C	0.987	NULL	HMMPfam_AT_hook,HMMPfam_zf-CXXC	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
BIK	638	genome.wustl.edu	36	22	41850018	41850018	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	22	41850018	41850018	C	T	SNP	BIK	NM_001197	human	genbank	54_36p	+1	reviewed	missense	c.46	p.L16F	0.000	NULL	PatternScan_BH3	-	no_errors
TTC7A	57217	genome.wustl.edu	36	2	47141511	47141511	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	2	47141511	47141511	G	A	SNP	TTC7A	NM_020458	human	genbank	54_36p	+1	validated	missense	c.2252	p.R751Q	0.999	superfamily_TPR-like,HMMPfam_TPR_2,HMMSmart_SM00028	superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1,HMMPfam_TPR_2	-	no_errors
SALL1	6299	genome.wustl.edu	36	16	49730723	49730723	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	16	49730723	49730723	C	T	SNP	SALL1	NM_002968	human	genbank	54_36p	-1	reviewed	missense	c.2911	p.D971N	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
HERC1	8925	genome.wustl.edu	36	15	61751768	61751768	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	15	61751768	61751768	C	A	SNP	HERC1	NM_003922	human	genbank	54_36p	-1	reviewed	silent	c.8025	p.V2675	0.994	NULL	superfamily_RCC1/BLIP-II,HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00449,HMMPfam_SPRY,PatternScan_PHOSPHOPANTETHEINE,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,PatternScan_ARGINASE_2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
LOC441506	441506	genome.wustl.edu	36	16	72532566	72532566	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	16	72532566	72532566	G	A	SNP	LOC441506	XR_017565	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.974	-	-	-	pseudogene
MON1B	22879	genome.wustl.edu	36	16	75786357	75786357	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	16	75786357	75786357	G	A	SNP	MON1B	NM_014940	human	genbank	54_36p	+1	validated	missense	c.1100	p.R367Q	1.000	HMMPfam_Mon1	HMMPfam_Mon1	-	no_errors
MYO7A	4647	genome.wustl.edu	36	11	76545685	76545685	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	11	76545685	76545685	G	A	SNP	MYO7A	NM_000260	human	genbank	54_36p	+1	reviewed	missense	c.722	p.R241H	0.414	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,HMMPfam_FERM_N,superfamily_Second domain of FERM,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1,HMMPfam_FERM_M	-	no_errors
ZFHX4	79776	genome.wustl.edu	36	8	77925984	77925984	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	8	77925984	77925984	G	A	SNP	ZFHX4	NM_024721	human	genbank	54_36p	+1	validated	silent	c.4137	p.A1379	0.363	superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
FBXW4	6468	genome.wustl.edu	36	10	103361497	103361497	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	10	103361497	103361497	C	T	SNP	FBXW4	NM_022039	human	genbank	54_36p	-1	reviewed	missense	c.997	p.E333K	1.000	superfamily_WD40_like,HMMSmart_WD40	PatternScan_WD_REPEATS_1,superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors
IGSF3	3321	genome.wustl.edu	36	1	116923936	116923936	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	1	116923936	116923936	G	A	SNP	IGSF3	NM_001542	human	genbank	54_36p	-1	validated	missense	c.2995	p.R999C	1.000	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_ig	-	no_errors
MLL	4297	genome.wustl.edu	36	11	117881785	117881785	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	11	117881785	117881785	G	A	SNP	MLL	NM_005933	human	genbank	54_36p	+1	validated	missense	c.9959	p.S3320N	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,PatternScan_RECR,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_FYRN,HMMSmart_SM00541,PatternScan_EF_HAND_1,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors
uc003vzh.2	0	genome.wustl.edu	36	7	141949422	141949422	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	7	141949422	141949422	G	T	SNP	uc003vzh.2	ENST00000390386	human	ensembl	54_36p	+1	known	missense	c.248	p.R83L	0.011	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406	-	no_stop_codon:bad_bp_length_for_coding_region
NF1	4763	genome.wustl.edu	36	17	26610176	26610180	+	Frame_Shift_Del	DEL	ATACT	ATACT	-	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	ATACT	ATACT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	17	26610176	26610180	ATACT	-	DEL	NF1	NM_001042492	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.4333_4337	p.I1445fs	1.000:1.000:0.998:1.000:1.000	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	(deletion:cds_exon[26610176,26610273])	no_errors
HIST1H2BL	8340	genome.wustl.edu	36	6	27883536	27883536	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-29-1771-01A-01W-0633-09	TCGA-29-1771-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	c2b715fd-1115-4496-a75c-90174080a96c	2906ec4b-8fce-443d-9fa5-1a9c8fb19865	6	27883536	27883536	T	-	DEL	HIST1H2BL	NM_003519	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.128	p.Y43fs	1.000	superfamily_Histone-fold,HMMSmart_H2B,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_H2B,HMMPfam_Histone,PatternScan_HISTONE_H2B	(deletion:cds_exon[27883283,27883663])	no_errors
