Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-CO3	4514	genome.wustl.edu	36	MT	9381	9381	+	Silent	SNP	G	A	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	MT	9381	9381	G	A	SNP	MT-CO3	ENST00000362079	human	ensembl	54_36p	+1	known	silent	c.174	p.W58	NULL	superfamily_CytC_oxdse_III,HMMPfam_COX3	superfamily_CytC_oxdse_III,HMMPfam_COX3	-	no_stop_codon:bad_bp_length_for_coding_region
SIRPA	140885	genome.wustl.edu	36	20	1863398	1863398	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	20	1863398	1863398	C	T	SNP	SIRPA	NM_001040022	human	genbank	54_36p	+1	reviewed	nonsense	c.1264	p.Q422*	1.000	NULL	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_C1-set,HMMSmart_IGc1	-	no_errors
ZNF77	58492	genome.wustl.edu	36	19	2885297	2885297	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	19	2885297	2885297	G	T	SNP	ZNF77	NM_021217	human	genbank	54_36p	-1	validated	silent	c.828	p.A276	0.014	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ENSG00000188954	0	genome.wustl.edu	36	4	4227650	4227650	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	4	4227650	4227650	G	A	SNP	ENSG00000188954	ENST00000342858	human	ensembl	54_36p	-1	known	missense	c.251	p.T84M	0.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_start_codon:no_stop_codon
TPTE	7179	genome.wustl.edu	36	21	9963836	9963836	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	21	9963836	9963836	A	G	SNP	TPTE	NM_199261	human	genbank	54_36p	-1	validated	silent	c.738	p.I246	1.000	superfamily_(Phosphotyrosine protein) phosphatases II	superfamily_Voltage-gated potassium channels,superfamily_(Phosphotyrosine protein) phosphatases II,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
GRHL1	29841	genome.wustl.edu	36	2	10021890	10021890	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	2	10021890	10021890	C	G	SNP	GRHL1	NM_014552	human	genbank	54_36p	+1	reviewed	missense	c.979	p.R327G	0.995	HMMPfam_CP2	HMMPfam_CP2	-	no_errors
TEKT3	64518	genome.wustl.edu	36	17	15158210	15158210	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	17	15158210	15158210	C	T	SNP	TEKT3	NM_031898	human	genbank	54_36p	-1	reviewed	missense	c.797	p.R266Q	0.992	HMMPfam_Tektin	HMMPfam_Tektin	-	no_errors
HERC2P2	400322	genome.wustl.edu	36	15	18905844	18905844	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	15	18905844	18905844	G	A	SNP	HERC2P2	ENST00000324413	human	ensembl	54_36p	-1	known	missense	c.2246	p.T749M	1.000	NULL	HMMPfam_MIB_HERC2	-	no_errors
BMP1	649	genome.wustl.edu	36	8	22110844	22110844	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	8	22110844	22110844	G	A	SNP	BMP1	NM_006129	human	genbank	54_36p	+1	reviewed	silent	c.2073	p.V691	1.000	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00235,HMMPfam_Astacin,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,PatternScan_EGF_CA,HMMSmart_SM00179,HMMPfam_EGF_CA,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF"	-	no_errors
RNASEN	29102	genome.wustl.edu	36	5	31540456	31540456	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	5	31540456	31540456	C	T	SNP	RNASEN	NM_013235	human	genbank	54_36p	-1	validated	missense	c.1631	p.R544H	1.000	NULL	superfamily_RNase III catalytic domain-like (Pfam 00636),HMMSmart_SM00535,PatternScan_RNASE_3_1,HMMPfam_Ribonuclease_3,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	-	no_errors
TOM1	10043	genome.wustl.edu	36	22	34049857	34049857	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	22	34049857	34049857	G	A	SNP	TOM1	NM_005488	human	genbank	54_36p	+1	reviewed	missense	c.598	p.A200T	0.000	superfamily_SSF89009	superfamily_ENTH_VHS,HMMPfam_VHS,HMMSmart_VHS,superfamily_SSF89009,HMMPfam_GAT	-	no_errors
RBL1	5933	genome.wustl.edu	36	20	35069252	35069252	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	20	35069252	35069252	G	A	SNP	RBL1	NM_002895	human	genbank	54_36p	-1	reviewed	silent	c.2847	p.Y949	0.916	superfamily_Cyclin-like	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385	-	no_errors
CNP	1267	genome.wustl.edu	36	17	37373858	37373858	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	17	37373858	37373858	G	C	SNP	CNP	NM_033133	human	genbank	54_36p	+1	validated	missense	c.250	p.D84H	0.994	HMMPfam_CNPase,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_CNPase,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_LigT-like	-	no_errors
C17orf53	78995	genome.wustl.edu	36	17	39585601	39585601	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	17	39585601	39585601	C	T	SNP	C17orf53	NM_024032	human	genbank	54_36p	+1	predicted	missense	c.1379	p.T460M	0.988	NULL	NULL	-	no_errors
FAM75A6	0	genome.wustl.edu	36	9	43567305	43567305	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	9	43567305	43567305	T	C	SNP	FAM75A6	ENST00000332857	human	ensembl	54_36p	-1	known	missense	c.1378	p.T460A	0.073	NULL	NULL	-	no_errors
SLC12A5	57468	genome.wustl.edu	36	20	44119219	44119219	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	20	44119219	44119219	C	T	SNP	SLC12A5	NM_020708	human	genbank	54_36p	+1	reviewed	silent	c.3129	p.N1043	1.000	NULL	HMMPfam_AA_permease	-	no_errors
FBLN1	2192	genome.wustl.edu	36	22	44337571	44337571	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	22	44337571	44337571	C	T	SNP	FBLN1	NM_001996	human	genbank	54_36p	+1	reviewed	missense	c.1813	p.R605C	1.000	NULL	HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL	-	no_errors
SPTBN4	57731	genome.wustl.edu	36	19	45773195	45773195	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	19	45773195	45773195	G	C	SNP	SPTBN4	NM_020971	human	genbank	54_36p	+1	reviewed	silent	c.7575	p.S2525	0.178	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
AMBRA1	55626	genome.wustl.edu	36	11	46523898	46523898	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	11	46523898	46523898	C	A	SNP	AMBRA1	NM_017749	human	genbank	54_36p	-1	validated	missense	c.383	p.G128V	1.000	superfamily_WD40_like,HMMSmart_WD40	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
COL2A1	1280	genome.wustl.edu	36	12	46680134	46680134	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	12	46680134	46680134	C	T	SNP	COL2A1	NM_001844	human	genbank	54_36p	-1	reviewed	missense	c.127	p.D43N	1.000	HMMPfam_VWC,HMMSmart_SM00214	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
FNDC3A	22862	genome.wustl.edu	36	13	48679278	48679278	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	13	48679278	48679278	C	T	SNP	FNDC3A	NM_001079673	human	genbank	54_36p	+1	validated	missense	c.3343	p.R1115C	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060	HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
DGKK	139189	genome.wustl.edu	36	X	50229960	50229960	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	X	50229960	50229960	G	T	SNP	DGKK	ENST00000376025	human	ensembl	54_36p	-1	known	missense	c.458	p.P153Q	0.002	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045	-	no_errors
SIGLEC8	27181	genome.wustl.edu	36	19	56653290	56653290	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	19	56653290	56653290	C	A	SNP	SIGLEC8	NM_014442	human	genbank	54_36p	-1	validated	missense	c.164	p.G55V	0.000	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
BSCL2	26580	genome.wustl.edu	36	11	62229431	62229431	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	11	62229431	62229431	C	A	SNP	BSCL2	NM_032667	human	genbank	54_36p	-1	reviewed	missense	c.130	p.V44L	1.000	HMMPfam_Seipin	HMMPfam_Seipin	-	no_errors
TRIM23	373	genome.wustl.edu	36	5	64928114	64928114	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	5	64928114	64928114	C	A	SNP	TRIM23	NM_001656	human	genbank	54_36p	-1	reviewed	missense	c.1310	p.G437V	1.000	HMMSmart_SM00177,HMMSmart_SM00178,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00502,HMMSmart_SM00177,HMMSmart_SM00178,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,PatternScan_ARF	-	no_errors
FAM75A7	26165	genome.wustl.edu	36	9	65246053	65246053	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	9	65246053	65246053	G	A	SNP	FAM75A7	NM_015667	human	genbank	54_36p	-1	validated	missense	c.1327	p.P443S	0.003	NULL	NULL	-	no_errors
DNAJC6	9829	genome.wustl.edu	36	1	65646930	65646930	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	1	65646930	65646930	C	A	SNP	DNAJC6	NM_014787	human	genbank	54_36p	+1	validated	missense	c.2339	p.A780D	1.000	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ	-	no_errors
C15orf17	57184	genome.wustl.edu	36	15	72982055	72982055	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	15	72982055	72982055	G	T	SNP	C15orf17	NM_020447	human	genbank	54_36p	-1	validated	nonsense	c.555	p.C185*	1.000	NULL	NULL	-	no_errors
ADAT1	23536	genome.wustl.edu	36	16	74212092	74212092	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	16	74212092	74212092	G	A	SNP	ADAT1	NM_012091	human	genbank	54_36p	-1	reviewed	missense	c.107	p.A36V	0.994	HMMSmart_SM00552	HMMSmart_SM00552,HMMPfam_A_deamin	-	no_errors
IMPG1	3617	genome.wustl.edu	36	6	76808448	76808448	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	6	76808448	76808448	G	A	SNP	IMPG1	NM_001563	human	genbank	54_36p	-1	provisional	silent	c.183	p.F61	0.988	NULL	superfamily_SSF82671,HMMPfam_SEA,HMMSmart_SEA	-	no_errors
PLCG2	5336	genome.wustl.edu	36	16	80499587	80499587	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	16	80499587	80499587	G	A	SNP	PLCG2	NM_002661	human	genbank	54_36p	+1	validated	silent	c.1623	p.T541	0.718	superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	superfamily_SSF50729,HMMSmart_PH,HMMPfam_PH,superfamily_SSF47473,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
CA1	759	genome.wustl.edu	36	8	86436512	86436512	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	8	86436512	86436512	T	C	SNP	CA1	NM_001738	human	genbank	54_36p	-1	validated	missense	c.268	p.R90G	0.434	superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase	superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1	-	no_errors
CA5A	763	genome.wustl.edu	36	16	86479243	86479243	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	16	86479243	86479243	C	T	SNP	CA5A	NM_001739	human	genbank	54_36p	-1	reviewed	missense	c.911	p.R304K	0.000	NULL	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,PatternScan_ALPHA_CA_1	-	no_errors
CLCA3	9629	genome.wustl.edu	36	1	86877193	86877193	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	1	86877193	86877193	C	T	SNP	CLCA3	ENST00000284054	human	ensembl	54_36p	+1	known	nonsense	c.622	p.R208*	0.001	HMMPfam_CLCA_N	HMMPfam_CLCA_N	-	no_errors
GALNT4	8693	genome.wustl.edu	36	12	88441893	88441893	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	12	88441893	88441893	A	T	SNP	GALNT4	NM_003774	human	genbank	54_36p	-1	reviewed	missense	c.565	p.Y189N	0.994	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	-	no_errors
AMY2B	280	genome.wustl.edu	36	1	103923604	103923604	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	1	103923604	103923604	G	T	SNP	AMY2B	NM_020978	human	genbank	54_36p	+1	reviewed	nonsense	c.1495	p.E499*	1.000	superfamily_Glycosyl hydrolase domain,HMMSmart_SM00632,HMMPfam_Alpha-amylase_C	superfamily_(Trans)glycosidases,HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_Glycosyl hydrolase domain,HMMSmart_SM00632,HMMPfam_Alpha-amylase_C	-	no_errors
CBLL1	79872	genome.wustl.edu	36	7	107185914	107185914	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	7	107185914	107185914	G	T	SNP	CBLL1	NM_024814	human	genbank	54_36p	+1	validated	missense	c.531	p.L177F	0.996	HMMSmart_ZnF_C2H2	PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57850,HMMSmart_RING,PatternScan_ZF_RING_1,HMMSmart_ZnF_C2H2	-	no_errors
TRPS1	7227	genome.wustl.edu	36	8	116668653	116668653	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	8	116668653	116668653	G	T	SNP	TRPS1	NM_014112	human	genbank	54_36p	-1	reviewed	missense	c.2450	p.P817Q	1.000	NULL	HMMSmart_ZnF_C2H2,superfamily_SSF57716,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
AASS	10157	genome.wustl.edu	36	7	121519082	121519082	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	7	121519082	121519082	T	C	SNP	AASS	NM_005763	human	genbank	54_36p	-1	reviewed	missense	c.1927	p.N643D	0.999	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Saccharop_dh,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain	superfamily_Formate/glycerate dehydrogenase catalytic domain-like,HMMPfam_AlaDh_PNT_N,HMMPfam_AlaDh_PNT_C,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Saccharop_dh,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain	-	no_errors
ATP6V0A2	23545	genome.wustl.edu	36	12	122778291	122778291	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	12	122778291	122778291	C	T	SNP	ATP6V0A2	NM_012463	human	genbank	54_36p	+1	validated	missense	c.530	p.S177F	1.000	HMMPfam_V_ATPase_I	HMMPfam_V_ATPase_I	-	no_errors
PCDHB6	56130	genome.wustl.edu	36	5	140511546	140511546	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	5	140511546	140511546	C	T	SNP	PCDHB6	NM_018939	human	genbank	54_36p	+1	reviewed	silent	c.1524	p.N508	0.258	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
INPP4B	8821	genome.wustl.edu	36	4	143401142	143401142	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	4	143401142	143401142	G	T	SNP	INPP4B	NM_001101669	human	genbank	54_36p	-1	reviewed	missense	c.641	p.A214D	0.996	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
HMGB3	3149	genome.wustl.edu	36	X	149906346	149906346	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	X	149906346	149906346	G	T	SNP	HMGB3	NM_005342	human	genbank	54_36p	+1	validated	missense	c.378	p.K126N	1.000	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	superfamily_HMG-box,HMMPfam_HMG_box,HMMSmart_HMG,PatternScan_HMG_BOX_1	-	no_errors
GIMAP6	474344	genome.wustl.edu	36	7	149956336	149956336	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	7	149956336	149956336	C	G	SNP	GIMAP6	NM_024711	human	genbank	54_36p	-1	reviewed	missense	c.283	p.D95H	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1	-	no_errors
uc003ezv.1	0	genome.wustl.edu	36	3	155323066	155323066	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	3	155323066	155323066	G	T	SNP	uc003ezv.1	ENST00000356448	human	ensembl	54_36p	+1	known	nonsense	c.595	p.E199*	0.003	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1	-	no_errors
NEK1	4750	genome.wustl.edu	36	4	170582408	170582408	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	4	170582408	170582408	T	C	SNP	NEK1	NM_012224	human	genbank	54_36p	-1	validated	silent	c.3009	p.Q1003	0.788	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
TBP	6908	genome.wustl.edu	36	6	170712977	170712977	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	6	170712977	170712977	G	A	SNP	TBP	NM_003194	human	genbank	54_36p	+1	reviewed	silent	c.228	p.Q76	0.973	NULL	superfamily_TFIID_C/glycos_N,HMMPfam_TBP,PatternScan_TFIID	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179167039	179167039	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1774-01A-01W-0639-09	TCGA-29-1774-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f075d72a-5f51-48f1-93a9-09249367f8ce	f29efd01-7121-4d99-a78b-10aeb8b1678e	2	179167039	179167039	C	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.46270	p.A15424S	0.998	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
