Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
USP14	9097	genome.wustl.edu	36	18	201269	201269	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	18	201269	201269	G	C	SNP	USP14	NM_005151	human	genbank	54_36p	+1	reviewed	missense	c.1470	p.E490D	0.998	NULL	HMMSmart_UBQ,superfamily_SSF54236,PatternScan_UBIQUITIN_1,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
ENSG00000186777	0	genome.wustl.edu	36	4	255378	255378	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	4	255378	255378	C	G	SNP	ENSG00000186777	ENST00000341087	human	ensembl	54_36p	-1	known	missense	c.250	p.V84L	0.998	superfamily_SSF57667	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_stop_codon
KRTAP5-6	440023	genome.wustl.edu	36	11	1675265	1675265	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	11	1675265	1675265	T	C	SNP	KRTAP5-6	NM_001012416	human	genbank	54_36p	+1	validated	missense	c.214	p.S72P	0.994	PatternScan_VWFC_1	PatternScan_MOLYBDOPTERIN_PROK_1,PatternScan_VWFC_1	-	no_errors
C4orf15	79441	genome.wustl.edu	36	4	2210250	2210250	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	4	2210250	2210250	G	T	SNP	C4orf15	NM_024511	human	genbank	54_36p	-1	predicted	missense	c.1228	p.Q410K	0.935	NULL	NULL	-	no_errors
NAGPA	51172	genome.wustl.edu	36	16	5018936	5018936	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	16	5018936	5018936	C	T	SNP	NAGPA	NM_016256	human	genbank	54_36p	-1	reviewed	missense	c.866	p.G289D	1.000	NULL	HMMPfam_EGF_2,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
ACTB	60	genome.wustl.edu	36	7	5534744	5534744	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	7	5534744	5534744	A	G	SNP	ACTB	NM_001101	human	genbank	54_36p	-1	reviewed	missense	c.496	p.Y166H	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7520102	7520102	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	17	7520102	7520102	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.310	p.Q104*	0.941	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
C3orf32	51066	genome.wustl.edu	36	3	8644455	8644455	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	3	8644455	8644455	G	C	SNP	C3orf32	NM_015931	human	genbank	54_36p	-1	predicted	silent	c.537	p.S179	0.065	NULL	NULL	-	no_errors
uc010dwx.1	0	genome.wustl.edu	36	19	10021712	10021712	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	19	10021712	10021712	C	G	SNP	uc010dwx.1	ENST00000333905	human	ensembl	54_36p	+1	known	missense	c.338	p.A113G	0.879	NULL	HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp	-	no_errors
DGKB	1607	genome.wustl.edu	36	7	14344702	14344702	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	7	14344702	14344702	G	A	SNP	DGKB	NM_004080	human	genbank	54_36p	-1	reviewed	silent	c.2088	p.T696	0.794	HMMPfam_DAGK_acc,HMMSmart_SM00045	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045	-	no_errors
AP1S2	8905	genome.wustl.edu	36	X	15780519	15780519	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	X	15780519	15780519	T	A	SNP	AP1S2	NM_003916	human	genbank	54_36p	-1	reviewed	missense	c.50	p.K17I	1.000	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_S	-	no_errors
LOC284232	284232	genome.wustl.edu	36	13	18310806	18310806	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	13	18310806	18310806	C	T	SNP	LOC284232	XR_037095	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.977	-	-	-	pseudogene
KLHDC7A	127707	genome.wustl.edu	36	1	18682352	18682352	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	18682352	18682352	G	A	SNP	KLHDC7A	NM_152375	human	genbank	54_36p	+1	validated	missense	c.2290	p.V764I	0.973	NULL	superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	-	no_errors
OR4N2	390429	genome.wustl.edu	36	14	19365848	19365848	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	14	19365848	19365848	C	A	SNP	OR4N2	NM_001004723	human	genbank	54_36p	+1	provisional	missense	c.401	p.T134N	0.168	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
AKR7L	246181	genome.wustl.edu	36	1	19472973	19472973	+	Silent	SNP	C	T	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	19472973	19472973	C	T	SNP	AKR7L	ENST00000388886	human	ensembl	54_36p	-1	known	silent	c.183	p.L61	1.000	superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red	superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red	-	pseudogene
WDR23	80344	genome.wustl.edu	36	14	23662080	23662080	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	14	23662080	23662080	G	C	SNP	WDR23	NM_025230	human	genbank	54_36p	+1	reviewed	missense	c.1460	p.R487P	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
EXTL3	2137	genome.wustl.edu	36	8	28630021	28630021	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	8	28630021	28630021	G	A	SNP	EXTL3	NM_001440	human	genbank	54_36p	+1	provisional	missense	c.526	p.G176S	0.708	NULL	HMMPfam_Exostosin,superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_64	-	no_errors
RBMS3	27303	genome.wustl.edu	36	3	29451396	29451396	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	3	29451396	29451396	C	A	SNP	RBMS3	NM_001003793	human	genbank	54_36p	+1	reviewed	silent	c.234	p.I78	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
TRIM31	11074	genome.wustl.edu	36	6	30179418	30179418	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	6	30179418	30179418	A	G	SNP	TRIM31	NM_007028	human	genbank	54_36p	-1	reviewed	silent	c.1152	p.S384	0.007	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336	-	no_errors
HLA-E	3133	genome.wustl.edu	36	6	30566932	30566932	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	6	30566932	30566932	A	C	SNP	HLA-E	NM_005516	human	genbank	54_36p	+1	reviewed	missense	c.650	p.D217A	0.006	HMMPfam_C1-set,superfamily_SSF48726	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog,HMMPfam_C1-set,superfamily_SSF48726,HMMSmart_IGc1,PatternScan_IG_MHC	-	no_errors
ERAF	51327	genome.wustl.edu	36	16	31447512	31447512	+	Nonstop_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	16	31447512	31447512	A	T	SNP	ERAF	NM_016633	human	genbank	54_36p	+1	validated	nonstop	c.308	p.*103L	0.003	NULL	superfamily_Alpha-hemoglobin stabilizing protein AHSP,HMMPfam_AHSP	-	no_errors
SUB1	10923	genome.wustl.edu	36	5	32624386	32624386	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	5	32624386	32624386	C	T	SNP	SUB1	NM_006713	human	genbank	54_36p	+1	validated	missense	c.11	p.S4L	1.000	NULL	HMMPfam_PC4,superfamily_ssDNA-binding transcriptional regulator domain	-	no_errors
TTC23L	153657	genome.wustl.edu	36	5	34902786	34902786	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	5	34902786	34902786	C	T	SNP	TTC23L	NM_144725	human	genbank	54_36p	+1	validated	missense	c.695	p.A232V	0.708	superfamily_TPR-like	superfamily_TPR-like	-	no_errors
ZNF76	7629	genome.wustl.edu	36	6	35363549	35363549	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	6	35363549	35363549	T	C	SNP	ZNF76	NM_003427	human	genbank	54_36p	+1	provisional	silent	c.381	p.D127	0.125	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
NIPBL	25836	genome.wustl.edu	36	5	37036732	37036732	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	5	37036732	37036732	A	T	SNP	NIPBL	NM_133433	human	genbank	54_36p	+1	reviewed	nonsense	c.3559	p.K1187*	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
SCN11A	11280	genome.wustl.edu	36	3	38925677	38925677	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	3	38925677	38925677	T	G	SNP	SCN11A	NM_014139	human	genbank	54_36p	-1	validated	missense	c.1114	p.T372P	0.009	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	no_errors
IDO1	3620	genome.wustl.edu	36	8	39894637	39894637	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	8	39894637	39894637	A	T	SNP	IDO1	NM_002164	human	genbank	54_36p	+1	validated	missense	c.174	p.R58S	0.430	HMMPfam_IDO	HMMPfam_IDO,PatternScan_IDO_1,PatternScan_IDO_2	-	no_errors
EFTUD2	9343	genome.wustl.edu	36	17	40312494	40312494	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	17	40312494	40312494	G	A	SNP	EFTUD2	NM_004247	human	genbank	54_36p	-1	validated	missense	c.658	p.R220C	1.000	superfamily_SSF52540,HMMPfam_GTP_EFTU	PatternScan_EFACTOR_GTP,superfamily_SSF52540,HMMPfam_GTP_EFTU,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,superfamily_EFG_III_V,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_EFG_IV,HMMPfam_EFG_C	-	no_errors
LRFN2	57497	genome.wustl.edu	36	6	40507989	40507989	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	6	40507989	40507989	T	A	SNP	LRFN2	NM_020737	human	genbank	54_36p	-1	provisional	missense	c.842	p.E281V	1.000	superfamily_L domain-like,HMMSmart_SM00082,superfamily_Immunoglobulin	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
LOC100131183	0	genome.wustl.edu	36	7	42119462	42119462	+	RNA	SNP	C	C	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	7	42119462	42119462	C	A	SNP	LOC100131183	XR_039424	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.014	-	-	-	pseudogene
ZNF573	126231	genome.wustl.edu	36	19	42922416	42922416	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	19	42922416	42922416	T	G	SNP	ZNF573	NM_152360	human	genbank	54_36p	-1	provisional	missense	c.641	p.K214T	0.948	superfamily_SSF57667	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
WFDC12	128488	genome.wustl.edu	36	20	43186298	43186298	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	20	43186298	43186298	G	A	SNP	WFDC12	NM_080869	human	genbank	54_36p	-1	reviewed	silent	c.102	p.C34	0.024	superfamily_WAP,HMMPfam_WAP,HMMSmart_WAP	superfamily_WAP,HMMPfam_WAP,HMMSmart_WAP,PatternScan_4_DISULFIDE_CORE	-	no_errors
B4GALNT2	124872	genome.wustl.edu	36	17	44601243	44601243	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	17	44601243	44601243	C	T	SNP	B4GALNT2	NM_153446	human	genbank	54_36p	+1	provisional	nonsense	c.1477	p.Q493*	0.125	NULL	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2	-	no_errors
LOC728576	728576	genome.wustl.edu	36	4	47403152	47403152	+	RNA	SNP	G	G	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	4	47403152	47403152	G	T	SNP	LOC728576	XR_015608	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
MSH2	4436	genome.wustl.edu	36	2	47563537	47563537	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	2	47563537	47563537	C	T	SNP	MSH2	NM_000251	human	genbank	54_36p	+1	reviewed	missense	c.2750	p.A917V	0.861	NULL	HMMPfam_MutS_I,HMMPfam_MutS_II,HMMPfam_MutS_III,superfamily_DNA_repair_MutS_domIII,HMMSmart_MUTSd,HMMPfam_MutS_IV,HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2	-	no_errors
HDC	3067	genome.wustl.edu	36	15	48321975	48321975	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	15	48321975	48321975	T	C	SNP	HDC	NM_002112	human	genbank	54_36p	-1	validated	missense	c.1763	p.N588S	1.000	NULL	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Pyridoxal_deC,PatternScan_DDC_GAD_HDC_YDC	-	no_errors
HDAC6	10013	genome.wustl.edu	36	X	48563541	48563541	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	X	48563541	48563541	G	A	SNP	HDAC6	NM_006044	human	genbank	54_36p	+1	reviewed	missense	c.2272	p.G758S	1.000	superfamily_SSF52768,HMMPfam_Hist_deacetyl	superfamily_SSF52768,HMMPfam_Hist_deacetyl,HMMSmart_ZnF_UBP,HMMPfam_zf-UBP	-	no_errors
ZNF227	7770	genome.wustl.edu	36	19	49430892	49430892	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	19	49430892	49430892	A	G	SNP	ZNF227	NM_182490	human	genbank	54_36p	+1	provisional	missense	c.469	p.K157E	0.003	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
DOCK3	1795	genome.wustl.edu	36	3	51374451	51374451	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	3	51374451	51374451	C	A	SNP	DOCK3	NM_004947	human	genbank	54_36p	+1	validated	missense	c.5128	p.L1710M	0.990	NULL	superfamily_SH3-domain,HMMPfam_SH3_2,HMMPfam_Ded_cyto	-	no_errors
ZC3H4	23211	genome.wustl.edu	36	19	52289639	52289639	+	Silent	SNP	G	A	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	19	52289639	52289639	G	A	SNP	ZC3H4	NM_015168	human	genbank	54_36p	-1	validated	silent	c.228	p.S76	0.028	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	-	no_errors
TRAM2	9697	genome.wustl.edu	36	6	52480380	52480380	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	6	52480380	52480380	C	G	SNP	TRAM2	NM_012288	human	genbank	54_36p	-1	reviewed	missense	c.556	p.E186Q	1.000	HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8	HMMPfam_TRAM1,HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8	-	no_errors
MRPS23	51649	genome.wustl.edu	36	17	53273335	53273335	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	17	53273335	53273335	G	C	SNP	MRPS23	NM_016070	human	genbank	54_36p	-1	reviewed	missense	c.371	p.A124G	1.000	HMMPfam_MRP-S23	HMMPfam_MRP-S23	-	no_errors
OR2AP1	0	genome.wustl.edu	36	12	54255256	54255256	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	12	54255256	54255256	A	G	SNP	OR2AP1	ENST00000321688	human	ensembl	54_36p	+1	known	missense	c.791	p.E264G	0.001	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
TBPL2	387332	genome.wustl.edu	36	14	54973162	54973162	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	14	54973162	54973162	G	T	SNP	TBPL2	NM_199047	human	genbank	54_36p	-1	validated	missense	c.478	p.P160T	0.000	NULL	superfamily_TFIID_C/glycos_N,HMMPfam_TBP,PatternScan_TFIID	-	no_errors
OR5L2	26338	genome.wustl.edu	36	11	55352132	55352132	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	11	55352132	55352132	C	G	SNP	OR5L2	NM_001004739	human	genbank	54_36p	+1	provisional	missense	c.862	p.L288V	0.034	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PPAT	5471	genome.wustl.edu	36	4	56964294	56964294	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	4	56964294	56964294	T	A	SNP	PPAT	NM_002703	human	genbank	54_36p	-1	reviewed	missense	c.433	p.S145C	0.970	HMMPfam_GATase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	HMMPfam_GATase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),superfamily_PRTase-like,HMMPfam_Pribosyltran	-	no_errors
OR10W1	81341	genome.wustl.edu	36	11	57791918	57791918	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	11	57791918	57791918	G	T	SNP	OR10W1	ENST00000395079	human	ensembl	54_36p	-1	known	missense	c.16	p.H6N	0.001	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_start_codon:no_stop_codon
FGGY	55277	genome.wustl.edu	36	1	59846065	59846065	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	59846065	59846065	C	T	SNP	FGGY	NM_018291	human	genbank	54_36p	+1	validated	silent	c.570	p.I190	1.000	superfamily_SSF53067	superfamily_SSF53067,HMMPfam_FGGY_C	-	no_errors
PRICKLE2	166336	genome.wustl.edu	36	3	64060146	64060146	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	3	64060146	64060146	G	C	SNP	PRICKLE2	NM_198859	human	genbank	54_36p	-1	validated	missense	c.2156	p.A719G	1.000	NULL	HMMPfam_PET,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716	-	no_errors
NRXN2	9379	genome.wustl.edu	36	11	64174546	64174546	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	11	64174546	64174546	G	T	SNP	NRXN2	NM_015080	human	genbank	54_36p	-1	reviewed	missense	c.3059	p.S1020Y	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00294	-	no_errors
MIRN124-2	0	genome.wustl.edu	36	8	65454352	65454352	+	RNA	SNP	C	C	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	8	65454352	65454352	C	A	SNP	MIRN124-2	ENST00000385081	human	ensembl	54_36p	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
FAM65A	79567	genome.wustl.edu	36	16	66130064	66130064	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	16	66130064	66130064	C	A	SNP	FAM65A	ENST00000379312	human	ensembl	54_36p	+1	known	missense	c.105	p.S35R	0.000	NULL	superfamily_ARM repeat	-	no_errors
RIMS1	22999	genome.wustl.edu	36	6	73024606	73024606	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	6	73024606	73024606	A	C	SNP	RIMS1	NM_014989	human	genbank	54_36p	+1	validated	missense	c.2828	p.Q943P	1.000	NULL	superfamily_FYVE/PHD zinc finger,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
CANT1	124583	genome.wustl.edu	36	17	74504852	74504852	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	17	74504852	74504852	C	G	SNP	CANT1	NM_138793	human	genbank	54_36p	-1	provisional	missense	c.448	p.D150H	0.005	superfamily_Apyrase,HMMPfam_Apyrase	superfamily_Apyrase,HMMPfam_Apyrase	-	no_errors
HK2	3099	genome.wustl.edu	36	2	74970049	74970049	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	2	74970049	74970049	C	T	SNP	HK2	NM_000189	human	genbank	54_36p	+1	reviewed	missense	c.2545	p.R849C	0.998	HMMPfam_Hexokinase_2,superfamily_SSF53067	HMMPfam_Hexokinase_1,superfamily_SSF53067,PatternScan_HEXOKINASES,HMMPfam_Hexokinase_2	-	no_errors
LHX8	431707	genome.wustl.edu	36	1	75399160	75399160	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	75399160	75399160	C	T	SNP	LHX8	NM_001001933	human	genbank	54_36p	+1	validated	missense	c.1063	p.H355Y	1.000	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
SLC44A5	204962	genome.wustl.edu	36	1	75456154	75456154	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	75456154	75456154	C	G	SNP	SLC44A5	NM_152697	human	genbank	54_36p	-1	validated	missense	c.1609	p.D537H	1.000	HMMPfam_DUF580	HMMPfam_DUF580	-	no_errors
GAB2	9846	genome.wustl.edu	36	11	77608048	77608048	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	11	77608048	77608048	T	C	SNP	GAB2	NM_080491	human	genbank	54_36p	-1	reviewed	missense	c.1949	p.K650R	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
LOC727874	727874	genome.wustl.edu	36	X	79703554	79703554	+	RNA	SNP	C	C	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	X	79703554	79703554	C	A	SNP	LOC727874	XR_042356	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
DNHL1	284944	genome.wustl.edu	36	2	84633556	84633556	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	2	84633556	84633556	A	T	SNP	DNHL1	ENST00000237449	human	ensembl	54_36p	+1	known	missense	c.1489	p.T497S	0.000	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
HS2ST1	9653	genome.wustl.edu	36	1	87330916	87330916	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	87330916	87330916	G	A	SNP	HS2ST1	NM_012262	human	genbank	54_36p	+1	reviewed	silent	c.564	p.R188	1.000	HMMPfam_HS2ST,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_HS2ST,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
WDR21C	138009	genome.wustl.edu	36	8	88955257	88955257	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	8	88955257	88955257	C	T	SNP	WDR21C	NM_152418	human	genbank	54_36p	-1	validated	missense	c.59	p.R20K	0.482	superfamily_WD40_like	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors
HERC3	8916	genome.wustl.edu	36	4	89844708	89844708	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	4	89844708	89844708	G	A	SNP	HERC3	NM_014606	human	genbank	54_36p	+1	provisional	silent	c.2868	p.S956	0.688	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
GPRIN3	285513	genome.wustl.edu	36	4	90388003	90388003	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	4	90388003	90388003	C	T	SNP	GPRIN3	NM_198281	human	genbank	54_36p	-1	validated	missense	c.2282	p.R761Q	0.445	NULL	NULL	-	no_errors
TC2N	123036	genome.wustl.edu	36	14	91323626	91323626	+	Silent	SNP	T	T	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	14	91323626	91323626	T	G	SNP	TC2N	NM_152332	human	genbank	54_36p	-1	validated	silent	c.1146	p.S382	0.970	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
SLC36A4	120103	genome.wustl.edu	36	11	92521397	92521397	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	11	92521397	92521397	G	C	SNP	SLC36A4	NM_152313	human	genbank	54_36p	-1	provisional	missense	c.1469	p.P490R	0.001	NULL	HMMPfam_Aa_trans	-	no_errors
SLC15A1	6564	genome.wustl.edu	36	13	98176651	98176651	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	13	98176651	98176651	G	A	SNP	SLC15A1	NM_005073	human	genbank	54_36p	-1	validated	silent	c.75	p.C25	0.997	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter,PatternScan_PTR2_1,HMMPfam_PTR2,PatternScan_PTR2_2	-	no_errors
AZGP1	563	genome.wustl.edu	36	7	99407505	99407505	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	7	99407505	99407505	G	A	SNP	AZGP1	NM_001185	human	genbank	54_36p	-1	validated	missense	c.137	p.A46V	0.019	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-	no_errors
SNORD113-5	0	genome.wustl.edu	36	14	100474287	100474287	+	RNA	SNP	A	A	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	14	100474287	100474287	A	T	SNP	SNORD113-5	NR_003233	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.021	-	-	-	no_errors
MMP27	64066	genome.wustl.edu	36	11	102067804	102067804	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	11	102067804	102067804	G	A	SNP	MMP27	NM_022122	human	genbank	54_36p	-1	reviewed	missense	c.1445	p.A482V	0.000	NULL	"HMMPfam_PG_binding_1,superfamily_PGBD-like,PatternScan_CYSTEINE_SWITCH,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120,PatternScan_HEMOPEXIN"	-	no_errors
IGHD	0	genome.wustl.edu	36	14	105378358	105378358	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	14	105378358	105378358	G	A	SNP	IGHD	ENST00000390556	human	ensembl	54_36p	-1	known	missense	c.725	p.T242M	0.004	superfamily_Immunoglobulin,HMMPfam_ig,HMMSmart_SM00407	superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC,HMMPfam_ig	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PIK3CG	5294	genome.wustl.edu	36	7	106296607	106296607	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	7	106296607	106296607	G	A	SNP	PIK3CG	NM_002649	human	genbank	54_36p	+1	reviewed	silent	c.1365	p.K455	0.353	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PI3K_C2	superfamily_Ubiquitin-like,HMMPfam_PI3K_rbd,HMMSmart_SM00144,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PI3K_C2,superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
TRHR	7201	genome.wustl.edu	36	8	110200708	110200708	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	8	110200708	110200708	A	T	SNP	TRHR	NM_003301	human	genbank	54_36p	+1	provisional	missense	c.1045	p.S349C	1.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SPAG17	200162	genome.wustl.edu	36	1	118317674	118317674	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	118317674	118317674	G	T	SNP	SPAG17	NM_206996	human	genbank	54_36p	-1	validated	missense	c.6038	p.T2013N	0.999	NULL	NULL	-	no_errors
CABP1	9478	genome.wustl.edu	36	12	119578380	119578380	+	Silent	SNP	G	A	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	12	119578380	119578380	G	A	SNP	CABP1	NM_031205	human	genbank	54_36p	+1	reviewed	silent	c.147	p.Q49	1.000	NULL	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
PTPRZ1	5803	genome.wustl.edu	36	7	121336025	121336025	+	Silent	SNP	A	A	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	7	121336025	121336025	A	T	SNP	PTPRZ1	ENST00000393385	human	ensembl	54_36p	+1	known	silent	c.18	p.T6	0.003	NULL	superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_start_codon
DTX3L	151636	genome.wustl.edu	36	3	123765992	123765992	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	3	123765992	123765992	C	T	SNP	DTX3L	NM_138287	human	genbank	54_36p	+1	validated	missense	c.29	p.P10L	1.000	NULL	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
ATAD2	29028	genome.wustl.edu	36	8	124417845	124417845	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	8	124417845	124417845	C	G	SNP	ATAD2	NM_014109	human	genbank	54_36p	-1	reviewed	missense	c.3160	p.D1054H	1.000	superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	HMMPfam_YL1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	-	no_errors
GSDMC	56169	genome.wustl.edu	36	8	130830025	130830025	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	8	130830025	130830025	C	T	SNP	GSDMC	NM_031415	human	genbank	54_36p	-1	validated	silent	c.1431	p.L477	0.000	HMMPfam_Gasdermin	HMMPfam_Gasdermin	-	no_errors
LAMC3	10319	genome.wustl.edu	36	9	132922157	132922157	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	9	132922157	132922157	G	T	SNP	LAMC3	NM_006059	human	genbank	54_36p	+1	reviewed	missense	c.1960	p.V654F	0.070	HMMPfam_Laminin_B	HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Laminin_B,PatternScan_EGF_2	-	no_errors
NCAPD3	23310	genome.wustl.edu	36	11	133551420	133551420	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	11	133551420	133551420	G	A	SNP	NCAPD3	NM_015261	human	genbank	54_36p	-1	validated	silent	c.3093	p.D1031	0.869	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_HEAT	-	no_errors
MATR3	9782	genome.wustl.edu	36	5	138671063	138671063	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	5	138671063	138671063	C	G	SNP	MATR3	NM_018834	human	genbank	54_36p	+1	reviewed	missense	c.60	p.D20E	1.000	NULL	HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
A4GNT	51146	genome.wustl.edu	36	3	139332631	139332631	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	3	139332631	139332631	A	T	SNP	A4GNT	NM_016161	human	genbank	54_36p	-1	reviewed	missense	c.158	p.V53E	0.965	NULL	HMMPfam_Gly_transf_sug,HMMPfam_Gb3_synth	-	no_errors
DENND2A	27147	genome.wustl.edu	36	7	139913500	139913500	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	7	139913500	139913500	T	A	SNP	DENND2A	NM_015689	human	genbank	54_36p	-1	validated	missense	c.1634	p.Q545L	1.000	NULL	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801	-	no_errors
PCDHA10	56139	genome.wustl.edu	36	5	140216244	140216244	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	5	140216244	140216244	G	C	SNP	PCDHA10	NM_018901	human	genbank	54_36p	+1	reviewed	missense	c.427	p.E143Q	0.975	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
CTAGE4	0	genome.wustl.edu	36	7	143513442	143513442	+	RNA	SNP	G	G	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	7	143513442	143513442	G	T	SNP	CTAGE4	XR_038147	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.967	-	-	-	no_errors
CNTNAP2	26047	genome.wustl.edu	36	7	146460284	146460284	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	7	146460284	146460284	T	C	SNP	CNTNAP2	NM_014141	human	genbank	54_36p	+1	reviewed	silent	c.1098	p.F366	0.984	superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like,PatternScan_GLYCO_HORMONE_BETA_1,HMMSmart_SM00294	-	no_errors
JAKMIP2	9832	genome.wustl.edu	36	5	147003840	147003840	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	5	147003840	147003840	G	C	SNP	JAKMIP2	NM_014790	human	genbank	54_36p	-1	provisional	missense	c.1198	p.Q400E	1.000	NULL	NULL	-	no_errors
LOC100128542	0	genome.wustl.edu	36	7	150077933	150077933	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	7	150077933	150077933	C	A	SNP	LOC100128542	XM_001720451	human	genbank	54_36p	+1	model	silent	c.177	p.T59	0.897	HMMPfam_SNARE	HMMPfam_SNARE	-	no_errors
IVL	3713	genome.wustl.edu	36	1	151150410	151150410	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	151150410	151150410	C	G	SNP	IVL	NM_005547	human	genbank	54_36p	+1	reviewed	missense	c.1513	p.Q505E	0.299	HMMPfam_Involucrin	PatternScan_INVOLUCRIN,HMMPfam_Involucrin_N,HMMPfam_Involucrin	-	no_errors
LRBA	987	genome.wustl.edu	36	4	151461965	151461965	+	Silent	SNP	T	T	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	4	151461965	151461965	T	A	SNP	LRBA	NM_006726	human	genbank	54_36p	-1	validated	silent	c.7491	p.P2497	0.986	superfamily_WD40 repeat-like	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
MAB21L2	10586	genome.wustl.edu	36	4	151724657	151724657	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	4	151724657	151724657	C	A	SNP	MAB21L2	NM_006439	human	genbank	54_36p	+1	reviewed	silent	c.1026	p.T342	1.000	HMMPfam_Mab-21	HMMPfam_Mab-21	-	no_errors
CCT8L1	155100	genome.wustl.edu	36	7	151774408	151774408	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	7	151774408	151774408	C	A	SNP	CCT8L1	NM_001029866	human	genbank	54_36p	+1	inferred	missense	c.914	p.T305K	0.000	superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,superfamily_SSF54849,superfamily_SSF52029	PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,superfamily_SSF54849,superfamily_SSF52029	-	no_errors
NEB	4703	genome.wustl.edu	36	2	152261396	152261396	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	2	152261396	152261396	C	T	SNP	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	splice_site	c.1569+1	e15+1	1.000	-	-	-	no_errors
C1orf104	284618	genome.wustl.edu	36	1	153557484	153557484	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	153557484	153557484	A	C	SNP	C1orf104	NM_001039517	human	genbank	54_36p	-1	predicted	missense	c.420	p.I140M	0.001	NULL	NULL	-	no_errors
GRIA2	2891	genome.wustl.edu	36	4	158444384	158444384	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	4	158444384	158444384	A	C	SNP	GRIA2	NM_000826	human	genbank	54_36p	+1	reviewed	missense	c.460	p.S154R	1.000	superfamily_SSF53822,HMMPfam_ANF_receptor	superfamily_SSF53822,HMMPfam_ANF_receptor,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
CD244	51744	genome.wustl.edu	36	1	159074864	159074864	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	159074864	159074864	C	T	SNP	CD244	NM_016382	human	genbank	54_36p	-1	validated	splice_site	c.834+1	e5+1	0.002	-	-	-	no_errors
RXRG	6258	genome.wustl.edu	36	1	163642698	163642698	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	163642698	163642698	G	T	SNP	RXRG	NM_006917	human	genbank	54_36p	-1	reviewed	missense	c.1219	p.Q407K	1.000	superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors
XIRP2	129446	genome.wustl.edu	36	2	167813573	167813573	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	2	167813573	167813573	G	C	SNP	XIRP2	NM_152381	human	genbank	54_36p	+1	validated	silent	c.7425	p.T2475	0.000	NULL	HMMPfam_Xin	-	no_errors
LOC646804	646804	genome.wustl.edu	36	1	169319331	169319331	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	169319331	169319331	G	A	SNP	LOC646804	XM_929761	human	genbank	54_36p	+1	model	silent	c.75	p.E25	0.998	NULL	PatternScan_RIBOSOMAL_L23	-	no_errors
RC3H1	149041	genome.wustl.edu	36	1	172208270	172208270	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	172208270	172208270	C	T	SNP	RC3H1	NM_172071	human	genbank	54_36p	-1	validated	silent	c.1221	p.Q407	1.000	NULL	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH	-	no_errors
ECT2	1894	genome.wustl.edu	36	3	173985248	173985248	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	3	173985248	173985248	C	G	SNP	ECT2	NM_018098	human	genbank	54_36p	+1	reviewed	missense	c.1693	p.P565A	1.000	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1	superfamily_BRCT domain,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179147407	179147407	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	2	179147407	179147407	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.59641	p.R19881W	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179167196	179167196	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	2	179167196	179167196	G	T	SNP	TTN	NM_133378	human	genbank	54_36p	-1	reviewed	nonsense	c.50465	p.S16822*	0.404	superfamily_Ypt/Rab-GAP domain of gyp1p	superfamily_Ypt/Rab-GAP domain of gyp1p,PatternScan_RCC1_2,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
DHX9	1660	genome.wustl.edu	36	1	181079106	181079106	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	181079106	181079106	G	C	SNP	DHX9	NM_001357	human	genbank	54_36p	+1	reviewed	missense	c.166	p.D56H	1.000	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358,HMMSmart_SM00487,HMMPfam_DEAD,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors
MSTN	2660	genome.wustl.edu	36	2	190635223	190635223	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	2	190635223	190635223	C	A	SNP	MSTN	NM_005259	human	genbank	54_36p	-1	reviewed	silent	c.345	p.T115	0.999	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,PatternScan_EF_HAND_1,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1	-	no_errors
LAD1	3898	genome.wustl.edu	36	1	199618023	199618023	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	199618023	199618023	C	T	SNP	LAD1	NM_005558	human	genbank	54_36p	-1	reviewed	missense	c.1528	p.D510N	0.000	NULL	NULL	-	no_errors
C2orf47	79568	genome.wustl.edu	36	2	200528797	200528797	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	2	200528797	200528797	T	A	SNP	C2orf47	NM_024520	human	genbank	54_36p	+1	predicted	missense	c.31	p.F11I	0.000	NULL	NULL	-	no_errors
RCOR3	55758	genome.wustl.edu	36	1	209552809	209552809	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	209552809	209552809	G	A	SNP	RCOR3	NM_018254	human	genbank	54_36p	+1	validated	silent	c.1026	p.Q342	1.000	NULL	HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors
USP37	57695	genome.wustl.edu	36	2	219038993	219038993	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	2	219038993	219038993	T	G	SNP	USP37	NM_020935	human	genbank	54_36p	-1	validated	missense	c.2450	p.Q817P	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH,HMMPfam_UIM,HMMSmart_SM00726	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,HMMSmart_SM00726,HMMPfam_UIM,PatternScan_UCH_2_2	-	no_errors
PTPRN	5798	genome.wustl.edu	36	2	219872710	219872710	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	2	219872710	219872710	C	A	SNP	PTPRN	NM_002846	human	genbank	54_36p	-1	reviewed	silent	c.1479	p.L493	1.000	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
WDR26	80232	genome.wustl.edu	36	1	222673919	222673919	+	Silent	SNP	T	T	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	222673919	222673919	T	G	SNP	WDR26	NM_025160	human	genbank	54_36p	-1	reviewed	silent	c.345	p.A115	0.989	NULL	HMMSmart_SM00668,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
MRPL44	65080	genome.wustl.edu	36	2	224532732	224532732	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	2	224532732	224532732	G	C	SNP	MRPL44	NM_022915	human	genbank	54_36p	+1	reviewed	missense	c.417	p.Q139H	0.962	superfamily_RNase_III,HMMSmart_RIBOc,HMMPfam_Ribonuclease_3	PatternScan_RNASE_3_1,superfamily_RNase_III,HMMSmart_RIBOc,HMMPfam_Ribonuclease_3,superfamily_SSF54768	-	no_errors
TTC13	79573	genome.wustl.edu	36	1	229160614	229160614	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	229160614	229160614	C	T	SNP	TTC13	NM_024525	human	genbank	54_36p	-1	validated	missense	c.421	p.D141N	1.000	NULL	HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1,HMMPfam_TPR_2	-	no_errors
EGLN1	54583	genome.wustl.edu	36	1	229623512	229623512	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	229623512	229623512	T	A	SNP	EGLN1	NM_022051	human	genbank	54_36p	-1	provisional	missense	c.746	p.K249M	1.000	HMMSmart_SM00702	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy	-	no_errors
COL6A3	1293	genome.wustl.edu	36	2	237970176	237970176	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	2	237970176	237970176	G	A	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	silent	c.24	p.P8	0.210	NULL	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors
ANO7	50636	genome.wustl.edu	36	2	241783795	241783795	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	2	241783795	241783795	C	T	SNP	ANO7	NM_001001891	human	genbank	54_36p	+1	validated	silent	c.333	p.D111	0.999	NULL	HMMPfam_DUF590	-	no_errors
AHCTF1	25909	genome.wustl.edu	36	1	245072688	245072688	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	245072688	245072688	T	G	SNP	AHCTF1	NM_015446	human	genbank	54_36p	-1	validated	missense	c.6539	p.Q2180P	0.002	NULL	PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
MT-ND5	4540	genome.wustl.edu	36	MT	13549	13550	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	MT	13549	13550	-	T	INS	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	frame_shift_ins	c.1212_1213	p.N404fs	NULL	NULL	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
LOC100133718	0	genome.wustl.edu	36	4	17839	17849	+	Frame_Shift_Del	DEL	GGCTGAATGTG	GGCTGAATGTG	-	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	GGCTGAATGTG	GGCTGAATGTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	4	17839	17849	GGCTGAATGTG	-	DEL	LOC100133718	XM_001713866	human	genbank	54_36p	-1	model	frame_shift_del	c.23_13	p.H5fs	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[17604,17861])	no_start_codon:pseudogene:no_stop_codon
LOC647546	647546	genome.wustl.edu	36	12	3228047	3228054	+	Frame_Shift_Del	DEL	GGGAGGTG	GGGAGGTG	-	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	GGGAGGTG	GGGAGGTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	12	3228047	3228054	GGGAGGTG	-	DEL	LOC647546	XM_936601	human	genbank	54_36p	-1	model	frame_shift_del	c.5399_5392	p.H1798fs	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[3225102,3228278])	no_start_codon:pseudogene:no_stop_codon
ZNF384	171017	genome.wustl.edu	36	12	6647331	6647333	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	TGC	TGC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	12	6647331	6647333	TGC	-	DEL	ZNF384	NM_001039916	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1361_1359	p.Q455in_frame_del	1.000:1.000:0.995	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[6647141,6647542])	no_errors
LOC100133762	0	genome.wustl.edu	36	12	9372309	9372310	+	Frame_Shift_Del	DEL	GT	GT	-	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	GT	GT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	12	9372309	9372310	GT	-	DEL	LOC100133762	XM_001716848	human	genbank	54_36p	-1	model	frame_shift_del	c.406_405	p.L136fs	0.000:0.000	NULL	NULL	(deletion:cds_exon[9372204,9372372])	pseudogene:no_stop_codon
LOC100131718	100131718	genome.wustl.edu	36	8	12448950	12448954	+	RNA	DEL	GGTCG	GGTCG	-	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	GGTCG	GGTCG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	8	12448950	12448954	GGTCG	-	DEL	LOC100131718	XR_038665	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000	-	-	(deletion:rna[12448333,12448991])	pseudogene
CHN2	1124	genome.wustl.edu	36	7	29404505	29404527	+	Splice_Site	DEL	TACCTTCAGGTTTCATGGGATCA	TACCTTCAGGTTTCATGGGATCA	-	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	TACCTTCAGGTTTCATGGGATCA	TACCTTCAGGTTTCATGGGATCA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	7	29404505	29404527	TACCTTCAGGTTTCATGGGATCA	-	DEL	CHN2	NM_004067	human	genbank	54_36p	+1	reviewed	splice_site_del	c.177-9_177-1	e5-1	0.001:0.000:0.033:0.007:0.008:0.082:0.630:0.998:1.000:1.000:1.000:1.000:0.989:1.000:0.997:0.619:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	(deletion:intron[29399852,29404513], cds_exon[29404514,29404627])	no_errors
RYR3	6263	genome.wustl.edu	36	15	31728681	31728682	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	CA	CA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	15	31728681	31728682	CA	-	DEL	RYR3	NM_001036	human	genbank	54_36p	+1	validated	frame_shift_del	c.4095_4096	p.T1366fs	0.982:0.997	HMMPfam_SPRY,HMMSmart_SM00449	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	(deletion:cds_exon[31728565,31728728])	no_errors
PIGU	128869	genome.wustl.edu	36	20	32696734	32696744	+	Splice_Site	DEL	ACTTACCATAA	ACTTACCATAA	-	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	ACTTACCATAA	ACTTACCATAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	20	32696734	32696744	ACTTACCATAA	-	DEL	PIGU	NM_080476	human	genbank	54_36p	-1	reviewed	splice_site_del	c.255+6_255+1	e4-1	0.993:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	(deletion:intron[32695692,32696739], cds_exon[32696740,32696799])	no_errors
MITF	4286	genome.wustl.edu	36	3	70096862	70096870	+	In_Frame_Del	DEL	GATGGCACC	GATGGCACC	-	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	GATGGCACC	GATGGCACC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	3	70096862	70096870	GATGGCACC	-	DEL	MITF	NM_198159	human	genbank	54_36p	+1	reviewed	in_frame_del	c.1336_1344	p.DGT446in_frame_del	1.000:1.000:0.990:1.000:1.000:0.998:1.000:1.000:1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	(deletion:cds_exon[70096688,70097089])	no_errors
LOC100131436	0	genome.wustl.edu	36	17	71599192	71599194	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	AGG	AGG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	17	71599192	71599194	AGG	-	DEL	LOC100131436	XM_001720272	human	genbank	54_36p	+1	model	in_frame_del	c.237_239	p.G80in_frame_del	0.000:0.000:0.001	NULL	NULL	(deletion:cds_exon[71598956,71599486])	no_errors
SLC15A1	6564	genome.wustl.edu	36	13	98156479	98156503	+	Frame_Shift_Del	DEL	GTTTCCTTTGGGGAAGACTGGAAGA	GTTTCCTTTGGGGAAGACTGGAAGA	-	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	GTTTCCTTTGGGGAAGACTGGAAGA	GTTTCCTTTGGGGAAGACTGGAAGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	13	98156479	98156503	GTTTCCTTTGGGGAAGACTGGAAGA	-	DEL	SLC15A1	NM_005073	human	genbank	54_36p	-1	validated	frame_shift_del	c.1179_1155	p.L386fs	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.002:0.160:0.984:0.999:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_MFS general substrate transporter,HMMPfam_PTR2	superfamily_MFS general substrate transporter,PatternScan_PTR2_1,HMMPfam_PTR2,PatternScan_PTR2_2	(deletion:cds_exon[98156389,98156508])	no_errors
SLC25A43	203427	genome.wustl.edu	36	X	118469992	118470017	+	Splice_Site	DEL	CCTGTCAGGCTCAGAGCCCCTACCTC	CCTGTCAGGCTCAGAGCCCCTACCTC	-	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	CCTGTCAGGCTCAGAGCCCCTACCTC	CCTGTCAGGCTCAGAGCCCCTACCTC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	X	118469992	118470017	CCTGTCAGGCTCAGAGCCCCTACCTC	-	DEL	SLC25A43	NM_145305	human	genbank	54_36p	+1	provisional	splice_site_del	c.691-8_691-1	e4-1	0.007:0.003:0.003:0.012:0.461:0.960:1.000:1.000:1.000:1.000:0.995:1.000:1.000:0.999:1.000:0.998:0.520:0.496:0.232:0.015:0.018:0.018:0.024:0.845:0.909:0.888	-	-	(deletion:intron[118428354,118469999], cds_exon[118470000,118470134])	no_errors
PTPRZ1	5803	genome.wustl.edu	36	7	121300618	121300619	+	Frame_Shift_Ins	INS	-	-	CA	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	7	121300618	121300619	-	CA	INS	PTPRZ1	ENST00000265220	human	ensembl	54_36p	+1	known	frame_shift_ins	c.99_100	p.T37fs	0.000:0.000	NULL	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_start_codon
CHML	1122	genome.wustl.edu	36	1	239864072	239864082	+	Frame_Shift_Del	DEL	CTCGTTTATTT	CTCGTTTATTT	-	novel	unknown	TCGA-29-1775-01A-01W-0639-09	TCGA-29-1775-10A-01W-0639-09	CTCGTTTATTT	CTCGTTTATTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7b15ab86-69b5-44a8-b90c-c4274b6bd45a	3d076c6a-cd17-44c8-9fb7-409aa54629c5	1	239864072	239864082	CTCGTTTATTT	-	DEL	CHML	NM_001821	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1620_1610	p.E537fs	0.061:0.040:0.000:0.000:0.000:0.000:0.000:0.000:0.007:0.023:0.048	superfamily_FAD/NAD(P)-binding domain,HMMPfam_GDI,superfamily_FAD-linked reductases C-terminal domain	superfamily_FAD/NAD(P)-binding domain,HMMPfam_GDI,superfamily_FAD-linked reductases C-terminal domain	(deletion:cds_exon[239863721,239865691])	no_errors
