Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ND2	0	genome.wustl.edu	36	MT	4685	4685	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	MT	4685	4685	T	C	SNP	MT-ND2	ENST00000361453	human	ensembl	54_36p	+1	known	missense	c.215	p.M72T	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1,HMMPfam_NADH_dehy_S2_C	-	no_stop_codon:bad_bp_length_for_coding_region
MT-ND4	4538	genome.wustl.edu	36	MT	10536	10536	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	MT	10536	10536	T	C	SNP	MT-ND4	ENST00000361335	human	ensembl	54_36p	+1	known	silent	c.66	p.Y22	NULL	HMMPfam_Oxidored_q2	HMMPfam_Oxidored_q2	-	no_errors
MT-ND4	4538	genome.wustl.edu	36	MT	11221	11221	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	MT	11221	11221	T	C	SNP	MT-ND4	ENST00000361381	human	ensembl	54_36p	+1	known	missense	c.461	p.L154P	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region
LOC729034	729034	genome.wustl.edu	36	17	177415	177415	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	17	177415	177415	G	C	SNP	LOC729034	XM_001129120	human	genbank	54_36p	+1	model	missense	c.1383	p.W461C	0.002	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
LOC441806	441806	genome.wustl.edu	36	18	846618	846618	+	RNA	SNP	A	A	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	18	846618	846618	A	G	SNP	LOC441806	XR_016826	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
ENSG00000209536	0	genome.wustl.edu	36	18	2764904	2764904	+	RNA	SNP	G	G	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	18	2764904	2764904	G	C	SNP	ENSG00000209536	ENST00000386801	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.000	-	-	-	pseudogene
TPRG1L	127262	genome.wustl.edu	36	1	3534917	3534917	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	1	3534917	3534917	C	T	SNP	TPRG1L	NM_182752	human	genbank	54_36p	+1	validated	silent	c.709	p.L237	1.000	NULL	PatternScan_LIPOCALIN	-	no_errors
SPNS3	201305	genome.wustl.edu	36	17	4303217	4303217	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	17	4303217	4303217	G	T	SNP	SPNS3	NM_182538	human	genbank	54_36p	+1	validated	missense	c.1081	p.V361F	0.019	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors
DHX33	56919	genome.wustl.edu	36	17	5297883	5297883	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	17	5297883	5297883	G	T	SNP	DHX33	NM_020162	human	genbank	54_36p	-1	reviewed	missense	c.1289	p.T430N	0.999	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors
LAG3	3902	genome.wustl.edu	36	12	6754260	6754260	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	12	6754260	6754260	C	T	SNP	LAG3	NM_002286	human	genbank	54_36p	+1	reviewed	silent	c.750	p.N250	0.980	superfamily_SSF48726,HMMSmart_IG	HMMSmart_IG,superfamily_SSF48726,HMMPfam_ig,HMMPfam_V-set	-	no_errors
LOC100128519	0	genome.wustl.edu	36	4	9164612	9164612	+	RNA	SNP	G	G	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	4	9164612	9164612	G	C	SNP	LOC100128519	XR_038473	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SWAP70	23075	genome.wustl.edu	36	11	9691629	9691629	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	11	9691629	9691629	G	T	SNP	SWAP70	NM_015055	human	genbank	54_36p	+1	validated	missense	c.281	p.C94F	1.000	superfamily_SSF47473	superfamily_SSF47473,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
MYH2	4620	genome.wustl.edu	36	17	10373409	10373409	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	17	10373409	10373409	C	A	SNP	MYH2	NM_001100112	human	genbank	54_36p	-1	validated	nonsense	c.3232	p.E1078*	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
CARM1	10498	genome.wustl.edu	36	19	10891602	10891602	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	19	10891602	10891602	G	A	SNP	CARM1	NM_199141	human	genbank	54_36p	+1	validated	missense	c.1156	p.G386S	1.000	superfamily_SSF53335	superfamily_SSF53335,HMMPfam_PrmA	-	no_errors
ROCK2	9475	genome.wustl.edu	36	2	11272518	11272518	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	11272518	11272518	G	A	SNP	ROCK2	NM_004850	human	genbank	54_36p	-1	reviewed	missense	c.1835	p.A612V	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C,HMMPfam_HR1,HMMPfam_Rho_Binding,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Cysteine-rich domain,HMMPfam_C1_1,HMMSmart_SM00109	-	no_errors
TRIO	7204	genome.wustl.edu	36	5	14411356	14411356	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	5	14411356	14411356	G	T	SNP	TRIO	NM_007118	human	genbank	54_36p	+1	validated	missense	c.2116	p.V706L	1.000	superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_CRAL/TRIO domain,HMMSmart_SM00516,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ZNF333	84449	genome.wustl.edu	36	19	14667465	14667465	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	19	14667465	14667465	C	G	SNP	ZNF333	NM_032433	human	genbank	54_36p	+1	validated	missense	c.215	p.T72R	0.001	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
NBAS	51594	genome.wustl.edu	36	2	15385823	15385823	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	15385823	15385823	C	T	SNP	NBAS	NM_015909	human	genbank	54_36p	-1	validated	missense	c.4412	p.G1471E	1.000	NULL	superfamily_WD40 repeat-like,HMMPfam_Sec39,PatternScan_RIBOSOMAL_S14	-	no_errors
CCT8L2	150160	genome.wustl.edu	36	22	15453310	15453310	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	22	15453310	15453310	G	T	SNP	CCT8L2	NM_014406	human	genbank	54_36p	-1	validated	missense	c.131	p.A44D	0.068	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like	-	no_errors
IL17RA	23765	genome.wustl.edu	36	22	15962934	15962934	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	22	15962934	15962934	G	A	SNP	IL17RA	NM_014339	human	genbank	54_36p	+1	reviewed	splice_site	c.598+1	e6+1	1.000	-	-	-	no_errors
PIK3C2G	5288	genome.wustl.edu	36	12	18390959	18390959	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	12	18390959	18390959	A	T	SNP	PIK3C2G	ENST00000266497	human	ensembl	54_36p	+1	known	missense	c.1547	p.Y516F	0.000	HMMPfam_PI3K_C2	superfamily_Ubiquitin-like,HMMPfam_PI3K_rbd,HMMPfam_PI3K_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMSmart_SM00239,HMMPfam_C2	-	no_errors
SFRS14	10147	genome.wustl.edu	36	19	18996921	18996921	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	19	18996921	18996921	C	A	SNP	SFRS14	NM_001017392	human	genbank	54_36p	-1	reviewed	silent	c.1236	p.V412	1.000	NULL	superfamily_Surp module (SWAP domain Pfam 01805),HMMSmart_SM00648,HMMPfam_Surp,HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors
ARL5B	221079	genome.wustl.edu	36	10	18997589	18997589	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	10	18997589	18997589	A	G	SNP	ARL5B	NM_178815	human	genbank	54_36p	+1	validated	missense	c.232	p.N78D	1.000	HMMSmart_SM00178,HMMPfam_Arf,HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00178,HMMPfam_Arf,HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_ARF	-	no_errors
GP2	2813	genome.wustl.edu	36	16	20234818	20234818	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	16	20234818	20234818	G	A	SNP	GP2	NM_001007240	human	genbank	54_36p	-1	validated	silent	c.1471	p.L491	0.000	NULL	HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1	-	no_errors
PLXDC2	84898	genome.wustl.edu	36	10	20330888	20330888	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	10	20330888	20330888	G	A	SNP	PLXDC2	NM_032812	human	genbank	54_36p	+1	provisional	silent	c.291	p.L97	0.977	NULL	HMMPfam_PSI,HMMSmart_SM00423	-	no_errors
ACSM1	116285	genome.wustl.edu	36	16	20580655	20580655	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	16	20580655	20580655	T	C	SNP	ACSM1	NM_052956	human	genbank	54_36p	-1	validated	silent	c.954	p.S318	0.000	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
PPM1F	9647	genome.wustl.edu	36	22	20607647	20607647	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	22	20607647	20607647	C	G	SNP	PPM1F	NM_014634	human	genbank	54_36p	-1	reviewed	missense	c.1183	p.A395P	0.999	superfamily_PP2C-related,HMMSmart_PP2Cc,HMMPfam_PP2C,HMMSmart_PP2C_SIG	superfamily_PP2C-related,HMMSmart_PP2Cc,HMMPfam_PP2C,HMMSmart_PP2C_SIG,PatternScan_PP2C	-	no_errors
MYH7	4625	genome.wustl.edu	36	14	22956041	22956041	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	14	22956041	22956041	T	C	SNP	MYH7	NM_000257	human	genbank	54_36p	-1	reviewed	missense	c.4520	p.E1507G	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors
MYH7	4625	genome.wustl.edu	36	14	22962613	22962613	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	14	22962613	22962613	C	G	SNP	MYH7	NM_000257	human	genbank	54_36p	-1	reviewed	missense	c.3082	p.E1028Q	1.000	superfamily_Prefoldin	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CPNE6	9362	genome.wustl.edu	36	14	23615275	23615275	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	14	23615275	23615275	C	T	SNP	CPNE6	NM_006032	human	genbank	54_36p	+1	reviewed	silent	c.1002	p.P334	1.000	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_Copine	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_Copine	-	no_errors
SOX5	6660	genome.wustl.edu	36	12	23619907	23619907	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	12	23619907	23619907	C	A	SNP	SOX5	NM_006940	human	genbank	54_36p	-1	reviewed	missense	c.1297	p.V433F	1.000	NULL	PatternScan_TONB_DEPENDENT_REC_1,superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors
TM9SF1	10548	genome.wustl.edu	36	14	23728628	23728628	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	14	23728628	23728628	A	C	SNP	TM9SF1	NM_006405	human	genbank	54_36p	-1	validated	missense	c.1654	p.F552V	0.998	HMMPfam_EMP70	HMMPfam_EMP70	-	no_errors
SUPT6H	6830	genome.wustl.edu	36	17	24034809	24034809	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	17	24034809	24034809	T	A	SNP	SUPT6H	NM_003170	human	genbank	54_36p	+1	validated	missense	c.2077	p.Y693N	1.000	NULL	HMMPfam_Tex_N,HMMSmart_SM00732,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00316,HMMPfam_S1,superfamily_SH2 domain,HMMSmart_SM00252	-	no_errors
CASC1	55259	genome.wustl.edu	36	12	25163391	25163391	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	12	25163391	25163391	C	A	SNP	CASC1	NM_018272	human	genbank	54_36p	-1	validated	missense	c.1351	p.V451L	0.138	NULL	NULL	-	no_errors
KIF3C	3797	genome.wustl.edu	36	2	26057795	26057795	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	26057795	26057795	C	G	SNP	KIF3C	NM_002254	human	genbank	54_36p	-1	validated	missense	c.496	p.E166Q	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_RIBOSOMAL_L2,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
C2orf39	92749	genome.wustl.edu	36	2	26521311	26521311	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	26521311	26521311	A	T	SNP	C2orf39	NM_145038	human	genbank	54_36p	+1	validated	missense	c.1387	p.M463L	0.046	NULL	NULL	-	no_errors
ZNF204	7754	genome.wustl.edu	36	6	27434005	27434005	+	RNA	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	6	27434005	27434005	T	C	SNP	ZNF204	NR_002722	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
KIAA1012	22878	genome.wustl.edu	36	18	27734955	27734955	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	18	27734955	27734955	G	T	SNP	KIAA1012	NM_014939	human	genbank	54_36p	-1	validated	missense	c.1421	p.P474Q	1.000	NULL	superfamily_TPR-like	-	no_errors
SULT1A1	6817	genome.wustl.edu	36	16	28527667	28527667	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	16	28527667	28527667	A	G	SNP	SULT1A1	NM_001055	human	genbank	54_36p	-1	reviewed	missense	c.11	p.I4T	0.005	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors
ALK	238	genome.wustl.edu	36	2	29298911	29298911	+	Silent	SNP	T	T	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	29298911	29298911	T	G	SNP	ALK	NM_004304	human	genbank	54_36p	-1	reviewed	silent	c.3426	p.P1142	0.503	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP	superfamily_LDL receptor-like module,HMMSmart_SM00192,HMMPfam_MAM,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors
TCN2	6948	genome.wustl.edu	36	22	29336918	29336918	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	22	29336918	29336918	T	C	SNP	TCN2	NM_000355	human	genbank	54_36p	+1	reviewed	missense	c.125	p.M42T	0.996	HMMPfam_Cobalamin_bind	HMMPfam_Cobalamin_bind,PatternScan_COBALAMIN_BINDING	-	no_errors
KRTAP6-1	337966	genome.wustl.edu	36	21	30908059	30908059	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	21	30908059	30908059	G	T	SNP	KRTAP6-1	NM_181602	human	genbank	54_36p	-1	validated	silent	c.36	p.T12	0.077	NULL	NULL	-	no_errors
DDX11	1663	genome.wustl.edu	36	12	31142142	31142142	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	12	31142142	31142142	G	C	SNP	DDX11	NM_152438	human	genbank	54_36p	+1	reviewed	missense	c.1819	p.A607P	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMPfam_DEAD_2,HMMSmart_SM00491	-	no_errors
PDE1C	5137	genome.wustl.edu	36	7	31871203	31871203	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	7	31871203	31871203	C	A	SNP	PDE1C	NM_005020	human	genbank	54_36p	-1	provisional	missense	c.628	p.V210F	1.000	superfamily_SSF109604	HMMPfam_PDEase_I_N,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
IQCC	55721	genome.wustl.edu	36	1	32445846	32445846	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	1	32445846	32445846	G	C	SNP	IQCC	NM_018134	human	genbank	54_36p	+1	provisional	missense	c.977	p.R326T	0.000	NULL	HMMPfam_IQ	-	no_errors
NFX1	4799	genome.wustl.edu	36	9	33285023	33285023	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	9	33285023	33285023	G	T	SNP	NFX1	NM_002504	human	genbank	54_36p	+1	reviewed	missense	c.631	p.V211L	0.008	NULL	superfamily_RING/U-box,HMMSmart_SM00184,PatternScan_ZF_PHD_1,HMMPfam_zf-C3HC4,HMMPfam_zf-NF-X1,HMMSmart_SM00438,HMMSmart_SM00393,superfamily_R3H domain,HMMPfam_R3H	-	no_errors
ANXA2P2	0	genome.wustl.edu	36	9	33615145	33615145	+	RNA	SNP	A	A	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	9	33615145	33615145	A	G	SNP	ANXA2P2	NR_003573	human	genbank	54_36p	+1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
LGALS2	3957	genome.wustl.edu	36	22	36296573	36296573	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	22	36296573	36296573	G	C	SNP	LGALS2	NM_006498	human	genbank	54_36p	-1	reviewed	missense	c.205	p.Q69E	0.746	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Gal-bind_lectin,HMMSmart_SM00276	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Gal-bind_lectin,HMMSmart_SM00276	-	no_errors
POSTN	10631	genome.wustl.edu	36	13	37069407	37069407	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	13	37069407	37069407	A	G	SNP	POSTN	NM_006475	human	genbank	54_36p	-1	validated	silent	c.132	p.C44	1.000	HMMPfam_EMI	HMMPfam_EMI,superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554	-	no_errors
LOC344382	344382	genome.wustl.edu	36	2	37897829	37897829	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	37897829	37897829	G	C	SNP	LOC344382	XM_293026	human	genbank	54_36p	+1	model	missense	c.268	p.D90H	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
DDHD2	23259	genome.wustl.edu	36	8	38226435	38226435	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	8	38226435	38226435	G	T	SNP	DDHD2	NM_015214	human	genbank	54_36p	+1	provisional	missense	c.1301	p.R434I	1.000	HMMSmart_SM00454,HMMPfam_SAM_1,superfamily_SAM/Pointed domain	HMMPfam_WWE,HMMSmart_SM00454,HMMPfam_SAM_1,superfamily_SAM/Pointed domain,HMMPfam_DDHD	-	no_errors
SLC25A39	51629	genome.wustl.edu	36	17	39755399	39755399	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	17	39755399	39755399	C	T	SNP	SLC25A39	NM_016016	human	genbank	54_36p	-1	validated	missense	c.214	p.G72S	1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
ITGA2B	3674	genome.wustl.edu	36	17	39808860	39808860	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	17	39808860	39808860	C	G	SNP	ITGA2B	NM_000419	human	genbank	54_36p	-1	reviewed	missense	c.2468	p.G823A	0.873	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
ZNF619	285267	genome.wustl.edu	36	3	40500184	40500184	+	Silent	SNP	C	T	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	3	40500184	40500184	C	T	SNP	ZNF619	NM_173656	human	genbank	54_36p	+1	validated	silent	c.213	p.G71	0.011	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
NELL2	4753	genome.wustl.edu	36	12	43200207	43200207	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	12	43200207	43200207	C	T	SNP	NELL2	NM_006159	human	genbank	54_36p	-1	reviewed	missense	c.2248	p.E750K	1.000	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_EGF_1	-	no_errors
KIAA0467	23334	genome.wustl.edu	36	1	43668870	43668870	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	1	43668870	43668870	G	T	SNP	KIAA0467	NM_015284	human	genbank	54_36p	+1	predicted	missense	c.1900	p.D634Y	0.998	NULL	NULL	-	no_errors
POLD2	5425	genome.wustl.edu	36	7	44123855	44123855	+	Silent	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	7	44123855	44123855	G	T	SNP	POLD2	NM_006230	human	genbank	54_36p	-1	validated	silent	c.354	p.L118	0.994	NULL	HMMPfam_DNA_pol_E_B	-	no_errors
SMC1B	27127	genome.wustl.edu	36	22	44183306	44183306	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	22	44183306	44183306	T	A	SNP	SMC1B	NM_148674	human	genbank	54_36p	-1	validated	missense	c.247	p.I83L	0.891	superfamily_SSF52540,HMMPfam_SMC_N	superfamily_SSF52540,HMMPfam_SMC_N,superfamily_SMC_hinge,HMMPfam_SMC_hinge	-	no_errors
ZMYND8	23613	genome.wustl.edu	36	20	45324550	45324550	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	20	45324550	45324550	C	T	SNP	ZMYND8	NM_183047	human	genbank	54_36p	-1	reviewed	missense	c.1510	p.A504T	1.000	NULL	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,superfamily_SSF63748,HMMPfam_PWWP,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors
MDGA2	161357	genome.wustl.edu	36	14	46458990	46458990	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	14	46458990	46458990	A	C	SNP	MDGA2	NM_182830	human	genbank	54_36p	-1	validated	missense	c.1319	p.V440G	1.000	superfamily_FN_III-like	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_MAM,HMMPfam_MAM	-	no_errors
MCM3AP	8888	genome.wustl.edu	36	21	46491121	46491121	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	21	46491121	46491121	A	C	SNP	MCM3AP	NM_003906	human	genbank	54_36p	-1	reviewed	missense	c.4398	p.S1466R	0.056	NULL	superfamily_SSF54928,HMMPfam_SAC3_GANP	-	no_errors
TTC7A	57217	genome.wustl.edu	36	2	47132465	47132465	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	47132465	47132465	C	A	SNP	TTC7A	NM_020458	human	genbank	54_36p	+1	validated	silent	c.2094	p.V698	0.995	superfamily_TPR-like	superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1,HMMPfam_TPR_2	-	no_errors
AQP6	363	genome.wustl.edu	36	12	48653470	48653470	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	12	48653470	48653470	C	A	SNP	AQP6	NM_001652	human	genbank	54_36p	+1	reviewed	missense	c.247	p.P83T	1.000	superfamily_MIP,HMMPfam_MIP,PatternScan_MIP	superfamily_MIP,HMMPfam_MIP,PatternScan_MIP	-	no_errors
ZNF226	7769	genome.wustl.edu	36	19	49371845	49371845	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	19	49371845	49371845	G	T	SNP	ZNF226	NM_001032372	human	genbank	54_36p	+1	validated	missense	c.590	p.C197F	0.000	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
C10orf71	118461	genome.wustl.edu	36	10	50200678	50200678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	10	50200678	50200678	G	A	SNP	C10orf71	NM_199459	human	genbank	54_36p	+1	validated	missense	c.82	p.E28K	1.000	NULL	NULL	-	no_errors
TRIM9	114088	genome.wustl.edu	36	14	50515763	50515763	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	14	50515763	50515763	C	G	SNP	TRIM9	ENST00000338969	human	ensembl	54_36p	-1	known	missense	c.2405	p.S802T	0.001	NULL	superfamily_SSF57850,HMMPfam_zf-C3HC4,HMMSmart_RING,PatternScan_ZF_RING_1,HMMSmart_BBOX,HMMPfam_zf-B_box,HMMSmart_BBC,superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3,superfamily_ConA_like_lec_gl,HMMPfam_SPRY	-	no_errors
HUWE1	10075	genome.wustl.edu	36	X	53592989	53592989	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	X	53592989	53592989	G	T	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	missense	c.9691	p.Q3231K	1.000	NULL	HMMPfam_DUF908,superfamily_ARM repeat,HMMPfam_DUF913,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,HMMPfam_WWE,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
TEX14	56155	genome.wustl.edu	36	17	53997229	53997229	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	17	53997229	53997229	C	A	SNP	TEX14	NM_198393	human	genbank	54_36p	-1	reviewed	missense	c.4184	p.R1395I	1.000	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr	-	no_errors
ENSG00000204471	0	genome.wustl.edu	36	17	55449361	55449361	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	17	55449361	55449361	C	T	SNP	ENSG00000204471	ENST00000338790	human	ensembl	54_36p	-1	known	missense	c.119	p.G40E	0.000	NULL	superfamily_RabGAP_TBC,HMMPfam_TBC	-	no_errors
DST	667	genome.wustl.edu	36	6	56615536	56615536	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	6	56615536	56615536	T	C	SNP	DST	NM_015548	human	genbank	54_36p	-1	reviewed	missense	c.10	p.S4G	1.000	NULL	HMMSmart_SM00150,superfamily_Spectrin repeat,HMMPfam_Spectrin,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_SM00243	-	no_errors
MYO1E	4643	genome.wustl.edu	36	15	57257950	57257950	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	15	57257950	57257950	C	G	SNP	MYO1E	NM_004998	human	genbank	54_36p	-1	validated	silent	c.1983	p.S661	0.226	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMPfam_Myosin_TH1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
PECAM1	5175	genome.wustl.edu	36	17	59802052	59802052	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	17	59802052	59802052	G	A	SNP	PECAM1	NM_000442	human	genbank	54_36p	-1	provisional	silent	c.525	p.V175	0.018	superfamily_Immunoglobulin	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
NLRP13	126204	genome.wustl.edu	36	19	61115621	61115621	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	19	61115621	61115621	A	G	SNP	NLRP13	NM_176810	human	genbank	54_36p	-1	validated	silent	c.1374	p.Y458	0.001	NULL	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047,HMMPfam_LRR_1	-	no_errors
NLRP13	126204	genome.wustl.edu	36	19	61115783	61115783	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	19	61115783	61115783	T	A	SNP	NLRP13	NM_176810	human	genbank	54_36p	-1	validated	missense	c.1212	p.E404D	0.000	NULL	HMMPfam_LRR_1,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047	-	no_errors
CCT4	10575	genome.wustl.edu	36	2	61950099	61950099	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	61950099	61950099	T	C	SNP	CCT4	NM_006430	human	genbank	54_36p	-1	validated	missense	c.1585	p.I529V	1.000	superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1	superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_SSF54849,superfamily_SSF52029	-	no_errors
KHDRBS2	202559	genome.wustl.edu	36	6	62669224	62669224	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	6	62669224	62669224	A	G	SNP	KHDRBS2	NM_152688	human	genbank	54_36p	-1	validated	silent	c.495	p.D165	1.000	superfamily_SSF54791	HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1	-	no_errors
C2orf86	51057	genome.wustl.edu	36	2	63520403	63520403	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	63520403	63520403	A	G	SNP	C2orf86	NM_015910	human	genbank	54_36p	-1	validated	missense	c.491	p.I164T	1.000	NULL	NULL	-	no_errors
SLC9A5	6553	genome.wustl.edu	36	16	65851283	65851283	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	16	65851283	65851283	G	T	SNP	SLC9A5	NM_004594	human	genbank	54_36p	+1	validated	missense	c.1775	p.G592V	1.000	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
LOC728683	728683	genome.wustl.edu	36	9	67861543	67861543	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	9	67861543	67861543	A	T	SNP	LOC728683	XM_001128151	human	genbank	54_36p	-1	model	missense	c.707	p.M236K	1.000	NULL	HMMPfam_7tm_1	-	no_errors
BAI3	577	genome.wustl.edu	36	6	69722803	69722803	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	6	69722803	69722803	T	A	SNP	BAI3	NM_001704	human	genbank	54_36p	+1	reviewed	splice_site	c.1360+2	e5+2	0.999	-	-	-	no_errors
UGT2A3	79799	genome.wustl.edu	36	4	69851479	69851479	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	4	69851479	69851479	T	A	SNP	UGT2A3	NM_024743	human	genbank	54_36p	-1	validated	missense	c.589	p.T197S	0.000	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT	PatternScan_HMA_1,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors
DNA2	1763	genome.wustl.edu	36	10	69899854	69899854	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	10	69899854	69899854	C	G	SNP	DNA2	NM_001080449	human	genbank	54_36p	-1	provisional	silent	c.405	p.V135	0.630	NULL	HMMPfam_Dna2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SFRS11	9295	genome.wustl.edu	36	1	70488288	70488288	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	1	70488288	70488288	G	C	SNP	SFRS11	NM_004768	human	genbank	54_36p	+1	reviewed	missense	c.1088	p.R363T	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
TBC1D4	9882	genome.wustl.edu	36	13	74782232	74782232	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	13	74782232	74782232	C	G	SNP	TBC1D4	NM_014832	human	genbank	54_36p	-1	validated	missense	c.2440	p.E814Q	1.000	NULL	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	-	no_errors
CRISPLD1	83690	genome.wustl.edu	36	8	76060816	76060816	+	Silent	SNP	A	A	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	8	76060816	76060816	A	C	SNP	CRISPLD1	NM_031461	human	genbank	54_36p	+1	validated	silent	c.39	p.T13	0.929	NULL	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP,PatternScan_CRISP_2,superfamily_LCCL domain,HMMSmart_SM00603,HMMPfam_LCCL	-	no_errors
C14orf133	63894	genome.wustl.edu	36	14	76977164	76977164	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	14	76977164	76977164	C	A	SNP	C14orf133	NM_022067	human	genbank	54_36p	-1	predicted	missense	c.760	p.A254S	1.000	HMMPfam_Golgin_A5	HMMPfam_Golgin_A5	-	no_errors
ROBO1	6091	genome.wustl.edu	36	3	79070707	79070707	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	3	79070707	79070707	A	C	SNP	ROBO1	NM_002941	human	genbank	54_36p	-1	reviewed	missense	c.233	p.I78S	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
LOC729779	729779	genome.wustl.edu	36	1	79294026	79294026	+	RNA	SNP	A	A	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	1	79294026	79294026	A	G	SNP	LOC729779	XR_016024	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.997	-	-	-	pseudogene
SLC38A8	146167	genome.wustl.edu	36	16	82633123	82633123	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	16	82633123	82633123	C	T	SNP	SLC38A8	NM_001080442	human	genbank	54_36p	-1	provisional	nonsense	c.141	p.W47*	1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
VCAN	1462	genome.wustl.edu	36	5	82852068	82852068	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	5	82852068	82852068	T	C	SNP	VCAN	NM_004385	human	genbank	54_36p	+1	validated	silent	c.2187	p.S729	0.129	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_C-type lectin-like,HMMSmart_SM00445,HMMPfam_Xlink,PatternScan_LINK_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
THAP9	79725	genome.wustl.edu	36	4	84057961	84057961	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	4	84057961	84057961	G	T	SNP	THAP9	NM_024672	human	genbank	54_36p	+1	validated	missense	c.1572	p.R524S	1.000	NULL	HMMPfam_THAP,HMMSmart_DM3	-	no_errors
SLC7A13	157724	genome.wustl.edu	36	8	87311108	87311108	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	8	87311108	87311108	C	G	SNP	SLC7A13	NM_138817	human	genbank	54_36p	-1	validated	missense	c.515	p.S172T	0.004	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
ANKRD11	29123	genome.wustl.edu	36	16	87899164	87899164	+	Silent	SNP	C	T	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	16	87899164	87899164	C	T	SNP	ANKRD11	NM_013275	human	genbank	54_36p	-1	validated	silent	c.177	p.K59	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
GLUD1	2746	genome.wustl.edu	36	10	88844378	88844378	+	Silent	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	10	88844378	88844378	C	A	SNP	GLUD1	NM_005271	human	genbank	54_36p	-1	validated	silent	c.129	p.P43	0.487	NULL	superfamily_SSF53223,HMMPfam_ELFV_dehydrog_N,PatternScan_GLFV_DEHYDROGENASE,HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd	-	no_errors
ENSG00000211624	0	genome.wustl.edu	36	2	89681519	89681519	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	89681519	89681519	T	C	SNP	ENSG00000211624	ENST00000390269	human	ensembl	54_36p	+1	known	silent	c.135	p.S45	0.990	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	-	no_stop_codon:bad_bp_length_for_coding_region
FZD1	8321	genome.wustl.edu	36	7	90733069	90733069	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	7	90733069	90733069	C	T	SNP	FZD1	NM_003505	human	genbank	54_36p	+1	reviewed	missense	c.938	p.P313L	0.999	HMMPfam_Frizzled	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,HMMPfam_Frizzled	-	no_errors
SPTLC1	10558	genome.wustl.edu	36	9	93917418	93917418	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	9	93917418	93917418	T	C	SNP	SPTLC1	NM_006415	human	genbank	54_36p	-1	reviewed	missense	c.56	p.E19G	1.000	NULL	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2	-	no_errors
CNNM3	26505	genome.wustl.edu	36	2	96862038	96862038	+	Silent	SNP	C	C	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	96862038	96862038	C	G	SNP	CNNM3	NM_017623	human	genbank	54_36p	+1	validated	silent	c.2082	p.G694	0.000	NULL	HMMPfam_DUF21,HMMPfam_CBS	-	no_errors
AVPI1	60370	genome.wustl.edu	36	10	99427672	99427672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	10	99427672	99427672	G	A	SNP	AVPI1	NM_021732	human	genbank	54_36p	-1	validated	missense	c.388	p.R130C	0.972	NULL	NULL	-	no_errors
TRIM56	81844	genome.wustl.edu	36	7	100519013	100519013	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	7	100519013	100519013	G	C	SNP	TRIM56	NM_030961	human	genbank	54_36p	+1	provisional	missense	c.1700	p.S567T	0.000	superfamily_NHL repeat	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_NHL repeat	-	no_errors
LOC646970	646970	genome.wustl.edu	36	1	100570743	100570743	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	1	100570743	100570743	C	T	SNP	LOC646970	XR_017347	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.001	-	-	-	pseudogene
ITGBL1	9358	genome.wustl.edu	36	13	101033642	101033642	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	13	101033642	101033642	C	T	SNP	ITGBL1	NM_004791	human	genbank	54_36p	+1	provisional	missense	c.803	p.T268I	1.000	superfamily_SSF57196	HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF	-	no_errors
TBC1D8B	54885	genome.wustl.edu	36	X	105998309	105998309	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	X	105998309	105998309	C	A	SNP	TBC1D8B	NM_017752	human	genbank	54_36p	+1	validated	nonsense	c.2759	p.S920*	1.000	superfamily_EF-hand,PatternScan_EF_HAND_1	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors
ZFPM2	23414	genome.wustl.edu	36	8	106883796	106883796	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	8	106883796	106883796	T	A	SNP	ZFPM2	NM_012082	human	genbank	54_36p	+1	reviewed	nonsense	c.2310	p.C770*	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LEF1	51176	genome.wustl.edu	36	4	109305701	109305701	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	4	109305701	109305701	C	A	SNP	LEF1	NM_016269	human	genbank	54_36p	-1	validated	splice_site	c.280+1	e2+1	1.000	-	-	-	no_errors
TMEM74	157753	genome.wustl.edu	36	8	109866356	109866356	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	8	109866356	109866356	G	C	SNP	TMEM74	NM_153015	human	genbank	54_36p	-1	provisional	missense	c.148	p.P50A	0.000	NULL	NULL	-	no_errors
APC	324	genome.wustl.edu	36	5	112201764	112201764	+	Silent	SNP	T	C	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	5	112201764	112201764	T	C	SNP	APC	NM_000038	human	genbank	54_36p	+1	reviewed	silent	c.2574	p.I858	0.023	NULL	superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm,HMMPfam_APC_15aa,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_APC_basic,HMMPfam_EB1_binding	-	no_errors
IL1F8	27177	genome.wustl.edu	36	2	113505198	113505198	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	113505198	113505198	C	A	SNP	IL1F8	NM_014438	human	genbank	54_36p	-1	reviewed	missense	c.19	p.A7S	0.000	superfamily_Cytokine	superfamily_Cytokine	-	no_errors
RASA3	22821	genome.wustl.edu	36	13	113798860	113798860	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	13	113798860	113798860	A	G	SNP	RASA3	NM_007368	human	genbank	54_36p	-1	reviewed	silent	c.1332	p.S444	0.887	HMMSmart_RasGAP,superfamily_Rho_GAP,HMMPfam_RasGAP	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMSmart_RasGAP,superfamily_Rho_GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_BTK,HMMPfam_BTK	-	no_errors
TG	7038	genome.wustl.edu	36	8	133982801	133982801	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	8	133982801	133982801	T	C	SNP	TG	NM_003235	human	genbank	54_36p	+1	validated	missense	c.3455	p.L1152P	0.042	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors
OLFM1	10439	genome.wustl.edu	36	9	137127566	137127566	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	9	137127566	137127566	C	G	SNP	OLFM1	NM_006334	human	genbank	54_36p	+1	reviewed	missense	c.282	p.D94E	1.000	NULL	NULL	-	no_errors
CDC23	8697	genome.wustl.edu	36	5	137553295	137553295	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	5	137553295	137553295	C	T	SNP	CDC23	NM_004661	human	genbank	54_36p	-1	reviewed	missense	c.1549	p.A517T	1.000	superfamily_TPR-like,HMMSmart_SM00028	HMMPfam_APC8,superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1	-	no_errors
MCF2	4168	genome.wustl.edu	36	X	138523054	138523054	+	Silent	SNP	T	C	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	X	138523054	138523054	T	C	SNP	MCF2	ENST00000338585	human	ensembl	54_36p	-1	known	silent	c.1398	p.K466	1.000	NULL	superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
PCDHGA2	56113	genome.wustl.edu	36	5	140699103	140699103	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	5	140699103	140699103	C	A	SNP	PCDHGA2	NM_018915	human	genbank	54_36p	+1	reviewed	missense	c.381	p.N127K	0.937	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	HMMSmart_SM00112,superfamily_Cadherin-like,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
GPR126	57211	genome.wustl.edu	36	6	142768599	142768599	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	6	142768599	142768599	G	T	SNP	GPR126	NM_198569	human	genbank	54_36p	+1	validated	missense	c.2209	p.D737Y	0.983	NULL	superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,superfamily_ConA_like_lec_gl,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,superfamily_SSF81321,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
CTAGE4	0	genome.wustl.edu	36	7	143513656	143513656	+	RNA	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	7	143513656	143513656	T	C	SNP	CTAGE4	XR_038147	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.929	-	-	-	no_errors
CYP11B1	1584	genome.wustl.edu	36	8	143958191	143958191	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	8	143958191	143958191	G	C	SNP	CYP11B1	NM_000497	human	genbank	54_36p	-1	reviewed	missense	c.41	p.P14R	0.041	NULL	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
PARP10	84875	genome.wustl.edu	36	8	145131224	145131224	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	8	145131224	145131224	G	C	SNP	PARP10	NM_032789	human	genbank	54_36p	-1	validated	missense	c.934	p.P312A	0.000	NULL	HMMSmart_UIM,superfamily_SSF56399,HMMPfam_PARP	-	no_errors
F5	2153	genome.wustl.edu	36	1	167788597	167788597	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	1	167788597	167788597	C	G	SNP	F5	NM_000130	human	genbank	54_36p	-1	reviewed	splice_site	c.1119-1	e8-1	1.000	-	-	-	no_errors
NSD1	64324	genome.wustl.edu	36	5	176495000	176495000	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	5	176495000	176495000	T	A	SNP	NSD1	NM_022455	human	genbank	54_36p	+1	reviewed	missense	c.290	p.F97Y	1.000	NULL	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_SET domain,HMMSmart_SM00570,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors
TTC30A	92104	genome.wustl.edu	36	2	178189808	178189808	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	178189808	178189808	C	A	SNP	TTC30A	NM_152275	human	genbank	54_36p	-1	validated	missense	c.1868	p.G623V	0.995	NULL	superfamily_SSF48452,HMMPfam_TPR_2,HMMSmart_TPR,HMMPfam_TPR_1	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179324182	179324182	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	179324182	179324182	T	C	SNP	TTN	NM_133379	human	genbank	54_36p	-1	reviewed	silent	c.11190	p.R3730	0.008	NULL	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_Titin_Z,HMMPfam_ig,PatternScan_IG_MHC,PatternScan_THIOL_PROTEASE_HIS	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179337594	179337594	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	179337594	179337594	A	G	SNP	TTN	NM_133379	human	genbank	54_36p	-1	reviewed	missense	c.9893	p.L3298P	0.998	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726	PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726	-	no_errors
GLUL	2752	genome.wustl.edu	36	1	180620287	180620287	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	1	180620287	180620287	T	C	SNP	GLUL	NM_001033044	human	genbank	54_36p	-1	validated	missense	c.998	p.K333R	1.000	superfamily_Glutamine synthetase/guanido kinase,HMMPfam_Gln-synt_C	superfamily_Glutamine synthetase N-terminal domain,HMMPfam_Gln-synt_N,PatternScan_GLNA_1,superfamily_Glutamine synthetase/guanido kinase,HMMPfam_Gln-synt_C,PatternScan_GLNA_ATP	-	no_errors
TP63	8626	genome.wustl.edu	36	3	191094870	191094870	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	3	191094870	191094870	G	A	SNP	TP63	NM_003722	human	genbank	54_36p	+1	reviewed	missense	c.1928	p.R643Q	1.000	NULL	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SAM/Pointed domain	-	no_errors
HHAT	55733	genome.wustl.edu	36	1	208914327	208914327	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	1	208914327	208914327	A	T	SNP	HHAT	NM_018194	human	genbank	54_36p	+1	validated	missense	c.1465	p.T489S	0.725	NULL	HMMPfam_MBOAT	-	no_errors
TNS1	7145	genome.wustl.edu	36	2	218391145	218391145	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	218391145	218391145	G	A	SNP	TNS1	NM_022648	human	genbank	54_36p	-1	reviewed	silent	c.3843	p.G1281	0.582	NULL	superfamily_SSF52799,HMMPfam_PTEN_C2,superfamily_C2_CaLB,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PTB	-	no_errors
SERPINE2	5270	genome.wustl.edu	36	2	224553358	224553358	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	224553358	224553358	C	T	SNP	SERPINE2	NM_006216	human	genbank	54_36p	-1	validated	missense	c.989	p.G330E	1.000	HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093	HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093,PatternScan_SERPIN	-	no_errors
DOCK10	55619	genome.wustl.edu	36	2	225348056	225348056	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	225348056	225348056	G	T	SNP	DOCK10	NM_014689	human	genbank	54_36p	-1	validated	missense	c.5823	p.D1941E	0.998	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto	-	no_errors
OBSCN	84033	genome.wustl.edu	36	1	226549246	226549246	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	1	226549246	226549246	C	G	SNP	OBSCN	NM_001098623	human	genbank	54_36p	+1	reviewed	nonsense	c.11538	p.Y3846*	0.299	HMMSmart_SM00406,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TRIM17	51127	genome.wustl.edu	36	1	226665355	226665355	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	1	226665355	226665355	C	A	SNP	TRIM17	NM_001024940	human	genbank	54_36p	-1	reviewed	missense	c.671	p.C224F	0.000	NULL	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors
KIF1A	547	genome.wustl.edu	36	2	241377339	241377339	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	241377339	241377339	C	A	SNP	KIF1A	NM_004321	human	genbank	54_36p	-1	reviewed	missense	c.170	p.W57L	1.000	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
KIF26B	55083	genome.wustl.edu	36	1	243596877	243596877	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	1	243596877	243596877	A	T	SNP	KIF26B	NM_018012	human	genbank	54_36p	+1	provisional	missense	c.584	p.K195M	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin	-	no_errors
NRIP1	8204	genome.wustl.edu	36	21	15259205	15259230	+	Frame_Shift_Del	DEL	TCTTGGAGAGTCTTTTTCATACTCAT	TCTTGGAGAGTCTTTTTCATACTCAT	-	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	TCTTGGAGAGTCTTTTTCATACTCAT	TCTTGGAGAGTCTTTTTCATACTCAT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	21	15259205	15259230	TCTTGGAGAGTCTTTTTCATACTCAT	-	DEL	NRIP1	NM_003489	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.3180_3155	p.N1052fs	0.569:0.559:0.271:0.042:0.996:0.998:0.913:0.998:1.000:1.000:1.000:0.999:0.720:0.586:0.576:0.128:0.157:0.250:0.230:0.256:0.265:0.225:0.915:0.997:0.982:0.983	NULL	NULL	(deletion:cds_exon[15258908,15262384])	no_errors
TM9SF1	10548	genome.wustl.edu	36	14	23728592	23728592	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	14	23728592	23728592	C	-	DEL	TM9SF1	NM_006405	human	genbank	54_36p	-1	validated	frame_shift_del	c.1690	p.V564fs	0.995	HMMPfam_EMP70	HMMPfam_EMP70	(deletion:cds_exon[23728461,23728854])	no_errors
TM9SF1	10548	genome.wustl.edu	36	14	23728594	23728610	+	Frame_Shift_Del	DEL	GCCCCAGACATGTTGGA	GCCCCAGACATGTTGGA	-	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	GCCCCAGACATGTTGGA	GCCCCAGACATGTTGGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	14	23728594	23728610	GCCCCAGACATGTTGGA	-	DEL	TM9SF1	NM_006405	human	genbank	54_36p	-1	validated	frame_shift_del	c.1688_1672	p.N559fs	0.931:0.942:0.961:1.000:1.000:0.991:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.996:1.000:1.000	HMMPfam_EMP70	HMMPfam_EMP70	(deletion:cds_exon[23728461,23728854])	no_errors
ADAMTS1	9510	genome.wustl.edu	36	21	27134164	27134164	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	21	27134164	27134164	C	-	DEL	ADAMTS1	NM_006988	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1753	p.E585fs	1.000	superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1	PatternScan_DISINTEGRIN_1,HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMSmart_ACR,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1	(deletion:cds_exon[27134065,27134251])	no_errors
SPTB	6710	genome.wustl.edu	36	14	64330088	64330088	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	14	64330088	64330088	A	-	DEL	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	frame_shift_del	c.2046	p.F682fs	1.000	HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	(deletion:cds_exon[64329468,64330338])	no_errors
WWP2	11060	genome.wustl.edu	36	16	68525493	68525493	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	16	68525493	68525493	A	-	DEL	WWP2	NM_007014	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.1802	p.H601fs	1.000	superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	(deletion:cds_exon[68525374,68525533])	no_errors
LOC389000	389000	genome.wustl.edu	36	2	91482175	91482194	+	Frame_Shift_Del	DEL	TGAAACAAACCACCTTCAAA	TGAAACAAACCACCTTCAAA	-	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	TGAAACAAACCACCTTCAAA	TGAAACAAACCACCTTCAAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	2	91482175	91482194	TGAAACAAACCACCTTCAAA	-	DEL	LOC389000	XM_371534	human	genbank	54_36p	-1	model	frame_shift_del	c.550_531	p.H177fs	0.988:0.989:0.999:1.000:1.000:1.000:1.000:0.999:1.000:0.997:0.989:0.990:0.990:0.991:0.998:0.998:0.995:0.995:0.994:0.988	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	(deletion:cds_exon[91482078,91482205])	pseudogene
PDE6C	5146	genome.wustl.edu	36	10	95362511	95362516	+	In_Frame_Del	DEL	GGAGGA	GGAGGA	-	novel	unknown	TCGA-29-1777-01A-01W-0639-09	TCGA-29-1777-10A-01W-0639-09	GGAGGA	GGAGGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	36e9c812-7a90-45cd-a44a-1e88ce96f2ea	1f5d62fb-db02-4d9a-839c-07d882823246	10	95362511	95362516	GGAGGA	-	DEL	PDE6C	NM_006204	human	genbank	54_36p	+1	validated	in_frame_del	c.39_44	p.EE14in_frame_del	0.998:0.996:1.000:1.000:0.997:0.997	NULL	superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	(deletion:cds_exon[95362473,95362952])	no_errors
