Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
CSF2RA	1438	genome.wustl.edu	36	X	1364673	1364673	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	X	1364673	1364673	C	T	SNP	CSF2RA	NM_006140	human	genbank	54_36p	+1	reviewed	silent	c.79	p.L27	0.005	NULL	superfamily_Fibronectin type III,HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2	-	no_errors
KCNQ1	3784	genome.wustl.edu	36	11	2639801	2639801	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	11	2639801	2639801	G	T	SNP	KCNQ1	NM_000218	human	genbank	54_36p	+1	reviewed	missense	c.1428	p.M476I	0.000	HMMPfam_KCNQ_channel	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors
PPL	5493	genome.wustl.edu	36	16	4875030	4875030	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	16	4875030	4875030	G	C	SNP	PPL	NM_002705	human	genbank	54_36p	-1	reviewed	silent	c.3627	p.L1209	0.998	NULL	HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	no_errors
TPP1	1200	genome.wustl.edu	36	11	6594915	6594915	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	11	6594915	6594915	C	T	SNP	TPP1	NM_000391	human	genbank	54_36p	-1	reviewed	missense	c.554	p.R185H	0.004	superfamily_Protease propeptides/inhibitors	superfamily_Protease propeptides/inhibitors,HMMPfam_Pro-kuma_activ,superfamily_Subtilisin-like	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517653	7517653	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	17	7517653	7517653	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.920-2	e8-2	0.950	-	-	-	no_errors
CAMTA1	23261	genome.wustl.edu	36	1	7646881	7646881	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	1	7646881	7646881	A	G	SNP	CAMTA1	NM_015215	human	genbank	54_36p	+1	validated	missense	c.1687	p.T563A	0.952	NULL	HMMPfam_CG-1,superfamily_E set domains,HMMPfam_TIG,superfamily_Ankyrin repeat,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IQ	-	no_errors
TUB	7275	genome.wustl.edu	36	11	8076972	8076972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	11	8076972	8076972	C	T	SNP	TUB	NM_003320	human	genbank	54_36p	+1	reviewed	missense	c.1255	p.R419C	1.000	superfamily_Tubby_C,HMMPfam_Tub	superfamily_Tubby_C,HMMPfam_Tub,PatternScan_TUB_1,PatternScan_TUB_2	-	no_errors
CLEC4D	338339	genome.wustl.edu	36	12	8562894	8562894	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	12	8562894	8562894	T	C	SNP	CLEC4D	NM_080387	human	genbank	54_36p	+1	reviewed	silent	c.255	p.P85	0.271	HMMSmart_CLECT,superfamily_C-type_lectin_fold	PatternScan_C_TYPE_LECTIN_1,HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMPfam_Lectin_C	-	no_errors
MYH11	4629	genome.wustl.edu	36	16	15716370	15716370	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	16	15716370	15716370	G	A	SNP	MYH11	NM_001040114	human	genbank	54_36p	-1	reviewed	missense	c.5704	p.R1902C	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
PLEKHA7	144100	genome.wustl.edu	36	11	16804498	16804498	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	11	16804498	16804498	G	T	SNP	PLEKHA7	NM_175058	human	genbank	54_36p	-1	provisional	missense	c.1088	p.S363Y	0.214	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
CROCC	9696	genome.wustl.edu	36	1	17147924	17147924	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	1	17147924	17147924	C	T	SNP	CROCC	NM_014675	human	genbank	54_36p	+1	validated	missense	c.2752	p.R918W	1.000	NULL	superfamily_Prefoldin	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	20882110	20882110	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	16	20882110	20882110	C	T	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.10597	p.A3533T	1.000	HMMPfam_Dynein_heavy	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_Prefoldin,HMMPfam_Dynein_heavy	-	no_errors
IGLV5-45	0	genome.wustl.edu	36	22	21060762	21060762	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	22	21060762	21060762	G	A	SNP	IGLV5-45	ENST00000390296	human	ensembl	54_36p	+1	known	missense	c.257	p.R86H	0.128	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406	-	no_stop_codon
KIAA0556	23247	genome.wustl.edu	36	16	27549895	27549895	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	16	27549895	27549895	C	T	SNP	KIAA0556	NM_015202	human	genbank	54_36p	+1	validated	nonsense	c.319	p.R107*	0.791	NULL	superfamily_Galactose-binding domain-like,PatternScan_AKH	-	no_errors
METT5D1	196074	genome.wustl.edu	36	11	28189322	28189322	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	11	28189322	28189322	G	A	SNP	METT5D1	NM_152636	human	genbank	54_36p	+1	validated	splice_site	c.407+1	e2+1	1.000	-	-	-	no_errors
MTPAP	55149	genome.wustl.edu	36	10	30669209	30669209	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	10	30669209	30669209	C	T	SNP	MTPAP	NM_018109	human	genbank	54_36p	-1	validated	silent	c.507	p.L169	0.000	superfamily_Nucleotidyltransferase	superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc	-	no_errors
MAPRE2	10982	genome.wustl.edu	36	18	30931554	30931554	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	18	30931554	30931554	G	T	SNP	MAPRE2	NM_014268	human	genbank	54_36p	+1	reviewed	splice_site	c.396+1	e3+1	1.000	-	-	-	no_errors
SMU1	55234	genome.wustl.edu	36	9	33058870	33058870	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	9	33058870	33058870	G	A	SNP	SMU1	NM_018225	human	genbank	54_36p	-1	validated	silent	c.453	p.G151	0.977	NULL	HMMSmart_SM00667,HMMSmart_SM00668,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
KRT10	3858	genome.wustl.edu	36	17	36229911	36229911	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	17	36229911	36229911	C	G	SNP	KRT10	NM_000421	human	genbank	54_36p	-1	reviewed	missense	c.1071	p.Q357H	1.000	HMMPfam_Filament,superfamily_Prefoldin	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
DYRK1A	1859	genome.wustl.edu	36	21	37800516	37800516	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	21	37800516	37800516	G	C	SNP	DYRK1A	ENST00000321219	human	ensembl	54_36p	+1	known	missense	c.1621	p.V541L	0.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_stop_codon
DHX57	90957	genome.wustl.edu	36	2	38944043	38944043	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	2	38944043	38944043	C	G	SNP	DHX57	NM_198963	human	genbank	54_36p	-1	provisional	missense	c.347	p.R116P	0.999	NULL	HMMPfam_UBA,HMMPfam_RWD,HMMPfam_zf-CCCH,HMMSmart_SM00356,HMMSmart_SM00487,HMMPfam_DEAD,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors
NPHS1	4868	genome.wustl.edu	36	19	41013601	41013601	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	19	41013601	41013601	G	A	SNP	NPHS1	NM_004646	human	genbank	54_36p	-1	validated	silent	c.3579	p.Y1193	0.960	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_I-set,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
KIAA1632	57724	genome.wustl.edu	36	18	41788626	41788626	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	18	41788626	41788626	G	A	SNP	KIAA1632	NM_020964	human	genbank	54_36p	-1	validated	missense	c.740	p.P247L	0.993	NULL	NULL	-	no_errors
CCNYL2	414194	genome.wustl.edu	36	10	42269785	42269785	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	10	42269785	42269785	G	A	SNP	CCNYL2	XM_374787	human	genbank	54_36p	-1	model	nonsense	c.589	p.Q197*	0.061	NULL	HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_Cyclin_N	-	no_errors
ZNF335	63925	genome.wustl.edu	36	20	44012521	44012521	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	20	44012521	44012521	C	G	SNP	ZNF335	NM_022095	human	genbank	54_36p	-1	reviewed	missense	c.3310	p.A1104P	0.320	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
RUVBL2	10856	genome.wustl.edu	36	19	54209593	54209593	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	19	54209593	54209593	A	G	SNP	RUVBL2	NM_006666	human	genbank	54_36p	+1	reviewed	missense	c.1042	p.I348V	1.000	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_TIP49	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,HMMPfam_TIP49	-	no_errors
MED25	81857	genome.wustl.edu	36	19	55023554	55023554	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	19	55023554	55023554	C	T	SNP	MED25	NM_030973	human	genbank	54_36p	+1	validated	silent	c.342	p.I114	0.996	NULL	NULL	-	no_errors
DDX4	54514	genome.wustl.edu	36	5	55124253	55124253	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	5	55124253	55124253	G	A	SNP	DDX4	NM_024415	human	genbank	54_36p	+1	validated	missense	c.1330	p.V444I	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
LANCL2	55915	genome.wustl.edu	36	7	55426979	55426979	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	7	55426979	55426979	G	C	SNP	LANCL2	NM_018697	human	genbank	54_36p	+1	validated	splice_site	c.205-1	e2-1	1.000	-	-	-	no_errors
LRP1	4035	genome.wustl.edu	36	12	55870867	55870867	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	12	55870867	55870867	G	A	SNP	LRP1	NM_002332	human	genbank	54_36p	+1	validated	nonsense	c.7044	p.W2348*	1.000	superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_1	-	no_errors
SERPINB2	5055	genome.wustl.edu	36	18	59715421	59715421	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	18	59715421	59715421	G	C	SNP	SERPINB2	NM_002575	human	genbank	54_36p	+1	validated	silent	c.405	p.A135	0.000	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors
RARRES3	5920	genome.wustl.edu	36	11	63068826	63068826	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	11	63068826	63068826	C	T	SNP	RARRES3	NM_004585	human	genbank	54_36p	+1	validated	silent	c.276	p.I92	0.970	HMMPfam_NC	HMMPfam_NC	-	no_errors
PLA2G15	23659	genome.wustl.edu	36	16	66836855	66836855	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	16	66836855	66836855	C	G	SNP	PLA2G15	NM_012320	human	genbank	54_36p	+1	reviewed	missense	c.25	p.R9G	0.000	NULL	superfamily_alpha/beta-Hydrolases,HMMPfam_LACT	-	no_errors
CABP4	57010	genome.wustl.edu	36	11	66982490	66982490	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	11	66982490	66982490	C	T	SNP	CABP4	NM_145200	human	genbank	54_36p	+1	validated	missense	c.724	p.P242S	0.996	superfamily_EF-hand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
RPLP1	6176	genome.wustl.edu	36	15	67534864	67534864	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	15	67534864	67534864	G	C	SNP	RPLP1	NM_001003	human	genbank	54_36p	+1	reviewed	missense	c.309	p.E103D	0.994	HMMPfam_Ribosomal_60s	HMMPfam_Ribosomal_60s	-	no_errors
BAI3	577	genome.wustl.edu	36	6	70091598	70091598	+	Silent	SNP	A	A	G	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	6	70091598	70091598	A	G	SNP	BAI3	NM_001704	human	genbank	54_36p	+1	reviewed	silent	c.2928	p.T976	0.915	HMMPfam_7tm_2	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
ZNF516	9658	genome.wustl.edu	36	18	72283457	72283457	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	18	72283457	72283457	C	T	SNP	ZNF516	ENST00000217537	human	ensembl	54_36p	-1	known	missense	c.542	p.S181N	0.904	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC391532	391532	genome.wustl.edu	36	15	73826757	73826757	+	RNA	SNP	T	T	G	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	15	73826757	73826757	T	G	SNP	LOC391532	XR_017653	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.978	-	-	-	pseudogene
SIRT7	51547	genome.wustl.edu	36	17	77465504	77465504	+	Silent	SNP	G	T	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	17	77465504	77465504	G	T	SNP	SIRT7	NM_016538	human	genbank	54_36p	-1	reviewed	silent	c.774	p.A258	0.572	superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_SIR2	superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_SIR2	-	no_errors
LOC643562	643562	genome.wustl.edu	36	6	80835784	80835784	+	RNA	SNP	C	C	G	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	6	80835784	80835784	C	G	SNP	LOC643562	XR_016539	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.956	-	-	-	pseudogene
LOC100129942	0	genome.wustl.edu	36	15	87334429	87334429	+	RNA	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	15	87334429	87334429	G	A	SNP	LOC100129942	XR_038237	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
C15orf32	145858	genome.wustl.edu	36	15	90816693	90816693	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	15	90816693	90816693	C	T	SNP	C15orf32	NM_153040	human	genbank	54_36p	+1	predicted	missense	c.311	p.P104L	0.013	NULL	NULL	-	no_errors
CLLU1OS	574016	genome.wustl.edu	36	12	91339069	91339069	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	12	91339069	91339069	T	A	SNP	CLLU1OS	NM_001025232	human	genbank	54_36p	-1	provisional	missense	c.154	p.T52S	0.035	NULL	NULL	-	no_errors
RHOBTB3	22836	genome.wustl.edu	36	5	95113772	95113772	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	5	95113772	95113772	C	G	SNP	RHOBTB3	NM_014899	human	genbank	54_36p	+1	validated	missense	c.644	p.S215C	0.003	NULL	superfamily_SSF52540,HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB	-	no_errors
LOC400986	400986	genome.wustl.edu	36	2	95884856	95884856	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	2	95884856	95884856	G	A	SNP	LOC400986	XM_001717763	human	genbank	54_36p	-1	model	missense	c.4880	p.A1627V	0.915	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
HSD17B3	3293	genome.wustl.edu	36	9	98042999	98042999	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	9	98042999	98042999	T	C	SNP	HSD17B3	NM_000197	human	genbank	54_36p	-1	reviewed	silent	c.684	p.P228	0.956	superfamily_NAD(P)-binding Rossmann-fold domains	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors
WDR20	91833	genome.wustl.edu	36	14	101744697	101744697	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	14	101744697	101744697	T	A	SNP	WDR20	NM_181291	human	genbank	54_36p	+1	reviewed	missense	c.437	p.L146Q	1.000	superfamily_WD40_like,HMMSmart_WD40	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors
SVEP1	79987	genome.wustl.edu	36	9	112291858	112291858	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	9	112291858	112291858	G	C	SNP	SVEP1	NM_153366	human	genbank	54_36p	-1	validated	missense	c.1823	p.A608G	1.000	HMMPfam_HYR	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Growth factor receptor domain,PatternScan_EGF_2,HMMPfam_GCC2_GCC3,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_HYR,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Pentaxin,HMMPfam_EGF_CA,HMMPfam_EGF_2	-	no_errors
PLBD2	196463	genome.wustl.edu	36	12	112309148	112309148	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	12	112309148	112309148	C	T	SNP	PLBD2	NM_173542	human	genbank	54_36p	+1	provisional	missense	c.1310	p.A437V	1.000	HMMPfam_Phospholip_B	HMMPfam_Phospholip_B	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	114360090	114360090	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	8	114360090	114360090	G	A	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.421	p.P141S	1.000	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors
GCN1L1	10985	genome.wustl.edu	36	12	119059893	119059893	+	Silent	SNP	T	T	G	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	12	119059893	119059893	T	G	SNP	GCN1L1	NM_006836	human	genbank	54_36p	-1	validated	silent	c.6502	p.R2168	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
LOC644213	644213	genome.wustl.edu	36	1	119878479	119878479	+	RNA	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	1	119878479	119878479	C	T	SNP	LOC644213	XR_016570	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
C5	727	genome.wustl.edu	36	9	122809072	122809072	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	9	122809072	122809072	G	C	SNP	C5	NM_001735	human	genbank	54_36p	-1	reviewed	missense	c.2353	p.Q785E	0.002	HMMPfam_A2M	PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_N,HMMPfam_A2M_N_2,superfamily_Anaphylatoxin,HMMPfam_ANATO,HMMSmart_ANATO,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,superfamily_Terp_cyc_toroid,HMMPfam_A2M_comp,superfamily_AM_receptor_bind,HMMPfam_A2M_recep,HMMSmart_C345C,HMMPfam_NTR	-	no_errors
C5orf48	389320	genome.wustl.edu	36	5	125999694	125999694	+	Silent	SNP	T	T	C	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	5	125999694	125999694	T	C	SNP	C5orf48	NM_207408	human	genbank	54_36p	+1	predicted	silent	c.267	p.L89	1.000	NULL	NULL	-	no_errors
PIWIL1	9271	genome.wustl.edu	36	12	129406076	129406076	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	12	129406076	129406076	C	G	SNP	PIWIL1	NM_004764	human	genbank	54_36p	+1	reviewed	missense	c.1315	p.R439G	0.879	NULL	superfamily_PAZ domain,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors
DOLPP1	57171	genome.wustl.edu	36	9	130886835	130886835	+	Silent	SNP	G	G	C	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	9	130886835	130886835	G	C	SNP	DOLPP1	NM_020438	human	genbank	54_36p	+1	validated	silent	c.144	p.V48	1.000	superfamily_AcPase_VanPerase	superfamily_AcPase_VanPerase,HMMPfam_PAP2,HMMSmart_acidPPc	-	no_errors
CEP63	80254	genome.wustl.edu	36	3	135760920	135760920	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	3	135760920	135760920	A	G	SNP	CEP63	NM_025180	human	genbank	54_36p	+1	reviewed	missense	c.1912	p.M638V	0.218	NULL	NULL	-	no_errors
PSD2	84249	genome.wustl.edu	36	5	139169374	139169374	+	Silent	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	5	139169374	139169374	G	A	SNP	PSD2	NM_032289	human	genbank	54_36p	+1	provisional	silent	c.165	p.A55	0.000	NULL	HMMSmart_SM00222,HMMPfam_Sec7,superfamily_Sec7 domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
ANKRD35	148741	genome.wustl.edu	36	1	144273630	144273630	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	1	144273630	144273630	G	A	SNP	ANKRD35	NM_144698	human	genbank	54_36p	+1	validated	missense	c.1961	p.R654Q	0.722	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
FOXH1	8928	genome.wustl.edu	36	8	145671933	145671933	+	Silent	SNP	G	A	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	8	145671933	145671933	G	A	SNP	FOXH1	NM_003923	human	genbank	54_36p	-1	reviewed	silent	c.15	p.S5	0.057	NULL	PatternScan_FORK_HEAD_1,HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2	-	no_errors
LOC100128116	0	genome.wustl.edu	36	5	146066127	146066127	+	RNA	SNP	C	C	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	5	146066127	146066127	C	A	SNP	LOC100128116	XR_039194	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.067	-	-	-	pseudogene
GATAD2B	57459	genome.wustl.edu	36	1	152052434	152052434	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	1	152052434	152052434	C	T	SNP	GATAD2B	NM_020699	human	genbank	54_36p	-1	validated	missense	c.1335	p.M445I	1.000	HMMPfam_GATA	PatternScan_GATA_ZN_FINGER_1,superfamily_SSF57716,HMMPfam_GATA	-	no_errors
MED12L	116931	genome.wustl.edu	36	3	152590488	152590488	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	3	152590488	152590488	C	A	SNP	MED12L	NM_053002	human	genbank	54_36p	+1	validated	missense	c.5378	p.P1793H	1.000	NULL	HMMPfam_Med12	-	no_errors
INSRR	3645	genome.wustl.edu	36	1	155082168	155082168	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	1	155082168	155082168	C	T	SNP	INSRR	NM_014215	human	genbank	54_36p	-1	validated	missense	c.2041	p.A681T	0.033	superfamily_FN_III-like,HMMSmart_FN3	superfamily_SSF52058,HMMPfam_Recep_L_domain,HMMPfam_Furin-like,superfamily_Grow_fac_recept,HMMSmart_FU,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors
KCNJ3	3760	genome.wustl.edu	36	2	155264034	155264034	+	Silent	SNP	C	C	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	2	155264034	155264034	C	T	SNP	KCNJ3	NM_002239	human	genbank	54_36p	+1	reviewed	silent	c.501	p.I167	1.000	HMMPfam_IRK,superfamily_SSF81324	HMMPfam_IRK,superfamily_SSF81324,superfamily_Ig_E-set	-	no_errors
SGCD	6444	genome.wustl.edu	36	5	155704105	155704105	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	5	155704105	155704105	G	A	SNP	SGCD	NM_000337	human	genbank	54_36p	+1	reviewed	missense	c.32	p.R11Q	1.000	NULL	HMMPfam_Sarcoglycan_1	-	no_errors
FGA	2243	genome.wustl.edu	36	4	155724960	155724960	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	4	155724960	155724960	G	T	SNP	FGA	NM_000508	human	genbank	54_36p	-1	reviewed	missense	c.2367	p.D789E	1.000	superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00186,HMMPfam_Fibrinogen_C	HMMPfam_Fib_alpha,superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors
PLCH1	23007	genome.wustl.edu	36	3	156681560	156681560	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	3	156681560	156681560	G	A	SNP	PLCH1	NM_014996	human	genbank	54_36p	-1	validated	missense	c.4859	p.T1620M	0.989	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
ATP10B	23120	genome.wustl.edu	36	5	159966594	159966594	+	Silent	SNP	C	T	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	5	159966594	159966594	C	T	SNP	ATP10B	NM_025153	human	genbank	54_36p	-1	validated	silent	c.2916	p.K972	0.004	superfamily_HAD-like	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase_3	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179106564	179106564	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	2	179106564	179106564	C	G	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.90967	p.D30323H	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
SLC40A1	30061	genome.wustl.edu	36	2	190136687	190136687	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	2	190136687	190136687	G	T	SNP	SLC40A1	NM_014585	human	genbank	54_36p	-1	reviewed	missense	c.1270	p.P424T	0.831	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter,HMMPfam_FPN1	-	no_errors
DNAH7	56171	genome.wustl.edu	36	2	196468060	196468060	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	2	196468060	196468060	T	A	SNP	DNAH7	NM_018897	human	genbank	54_36p	-1	validated	missense	c.4781	p.Q1594L	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,PatternScan_EF_HAND_1,HMMPfam_Dynein_heavy,PatternScan_ADH_SHORT	-	no_errors
ABCB10	23456	genome.wustl.edu	36	1	227728462	227728462	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	1	227728462	227728462	T	C	SNP	ABCB10	NM_012089	human	genbank	54_36p	-1	reviewed	missense	c.1750	p.I584V	0.984	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran	superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
SPHKAP	80309	genome.wustl.edu	36	2	228590188	228590188	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	2	228590188	228590188	C	A	SNP	SPHKAP	NM_030623	human	genbank	54_36p	-1	validated	missense	c.3626	p.S1209I	0.000	NULL	HMMPfam_AKAP_110	-	no_errors
WDR64	128025	genome.wustl.edu	36	1	239996218	239996218	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	1	239996218	239996218	G	A	SNP	WDR64	NM_144625	human	genbank	54_36p	+1	validated	missense	c.1153	p.G385R	0.269	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
C12orf35	55196	genome.wustl.edu	36	12	32025230	32025252	+	Frame_Shift_Del	DEL	ACCAGTCTTTAATAAACCAAATT	ACCAGTCTTTAATAAACCAAATT	-	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	ACCAGTCTTTAATAAACCAAATT	ACCAGTCTTTAATAAACCAAATT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	12	32025230	32025252	ACCAGTCTTTAATAAACCAAATT	-	DEL	C12orf35	NM_018169	human	genbank	54_36p	+1	validated	frame_shift_del	c.74_96	p.Q26fs	0.000:0.001:0.047:0.059:0.014:0.014:0.013:0.010:0.035:0.034:0.004:0.002:0.002:0.003:0.006:0.001:0.000:0.001:0.001:0.000:0.000:0.001:0.003	NULL	NULL	(deletion:cds_exon[32025157,32030158])	no_errors
CYP21A2	1589	genome.wustl.edu	36	6	32114194	32114196	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	CTG	CTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	6	32114194	32114196	CTG	-	DEL	CYP21A2	NM_000500	human	genbank	54_36p	+1	reviewed	in_frame_del	c.16_18	p.L9in_frame_del	0.796:0.973:0.975	NULL	superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	(deletion:cds_exon[32114179,32114380])	no_errors
ZNF485	220992	genome.wustl.edu	36	10	43432362	43432362	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	10	43432362	43432362	C	-	DEL	ZNF485	NM_145312	human	genbank	54_36p	+1	validated	frame_shift_del	c.748	p.Q250fs	0.881	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[43431745,43432823])	no_errors
CCDC142	84865	genome.wustl.edu	36	2	74555407	74555407	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	2	74555407	74555407	A	-	DEL	CCDC142	NM_032779	human	genbank	54_36p	-1	validated	frame_shift_del	c.2006	p.L669fs	0.820	NULL	NULL	(deletion:cds_exon[74555181,74555437])	no_errors
KIAA1033	23325	genome.wustl.edu	36	12	104067621	104067622	+	In_Frame_Ins	INS	-	-	TTT	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	12	104067621	104067622	-	TTT	INS	KIAA1033	NM_015275	human	genbank	54_36p	+1	validated	in_frame_ins	c.2613_2614	p.873in_frame_insF	0.959:1.000	NULL	NULL	-	no_errors
FAM166A	401565	genome.wustl.edu	36	9	139258557	139258558	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	AG	AG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	9	139258557	139258558	AG	-	DEL	FAM166A	NM_001001710	human	genbank	54_36p	-1	predicted	frame_shift_del	c.752_751	p.L251fs	0.001:0.002	NULL	HMMPfam_DUF2475	(deletion:cds_exon[139258444,139258561])	no_errors
SLC25A4	291	genome.wustl.edu	36	4	186303213	186303235	+	Frame_Shift_Del	DEL	GGACCAGGTTGGCTGCTGATGTG	GGACCAGGTTGGCTGCTGATGTG	-	novel	unknown	TCGA-29-1785-01A-01W-0633-09	TCGA-29-1785-10A-01W-0634-09	GGACCAGGTTGGCTGCTGATGTG	GGACCAGGTTGGCTGCTGATGTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d4ad0ff7-92fa-4c79-9e83-4408f8da83da	a7dc1312-038d-49bb-b3e4-d52e0d09e4d8	4	186303213	186303235	GGACCAGGTTGGCTGCTGATGTG	-	DEL	SLC25A4	NM_001151	human	genbank	54_36p	+1	validated	frame_shift_del	c.413_435	p.T139fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.989:1.000:1.000:0.918:1.000:1.000:0.987:1.000:1.000:1.000	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	(deletion:cds_exon[186302912,186303398])	no_errors
