Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
LOC730993	730993	genome.wustl.edu	36	11	3528477	3528477	+	RNA	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	11	3528477	3528477	C	T	SNP	LOC730993	XR_038262	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.574	-	-	-	pseudogene
UHRF1	29128	genome.wustl.edu	36	19	4895464	4895464	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	19	4895464	4895464	T	C	SNP	UHRF1	ENST00000398240	human	ensembl	54_36p	+1	known	splice_site	c.1344+2	e8+2	1.000	-	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519015	7519015	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	17	7519015	7519015	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.560-1	e5-1	0.383	-	-	-	no_errors
DENND5A	23258	genome.wustl.edu	36	11	9128810	9128810	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	11	9128810	9128810	C	G	SNP	DENND5A	NM_015213	human	genbank	54_36p	-1	validated	missense	c.2599	p.D867H	1.000	HMMPfam_RUN	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_RUN,HMMSmart_SM00593,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT	-	no_errors
COL5A3	50509	genome.wustl.edu	36	19	9977535	9977535	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	19	9977535	9977535	G	A	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	missense	c.374	p.A125V	0.932	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
CLNK	116449	genome.wustl.edu	36	4	10151257	10151257	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	4	10151257	10151257	T	A	SNP	CLNK	NM_052964	human	genbank	54_36p	-1	validated	missense	c.561	p.L187F	0.000	NULL	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
ZNF625	90589	genome.wustl.edu	36	19	12117311	12117311	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	19	12117311	12117311	T	G	SNP	ZNF625	NM_145233	human	genbank	54_36p	-1	provisional	missense	c.722	p.Q241P	0.011	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
GRIN2B	2904	genome.wustl.edu	36	12	13719977	13719977	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	12	13719977	13719977	A	C	SNP	GRIN2B	NM_000834	human	genbank	54_36p	-1	reviewed	missense	c.1094	p.I365S	1.000	superfamily_SSF53822	superfamily_SSF53822,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C	-	no_errors
LOC642311	642311	genome.wustl.edu	36	15	18623392	18623392	+	RNA	SNP	A	A	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	15	18623392	18623392	A	T	SNP	LOC642311	XR_017705	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC440225	440225	genome.wustl.edu	36	15	19402292	19402292	+	RNA	SNP	T	T	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	15	19402292	19402292	T	C	SNP	LOC440225	XR_042334	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
OR4K1	79544	genome.wustl.edu	36	14	19474516	19474516	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	14	19474516	19474516	C	A	SNP	OR4K1	NM_001004063	human	genbank	54_36p	+1	provisional	missense	c.851	p.P284H	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
CDH18	1016	genome.wustl.edu	36	5	19509195	19509195	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	5	19509195	19509195	G	A	SNP	CDH18	NM_004934	human	genbank	54_36p	-1	reviewed	missense	c.2270	p.T757M	0.068	HMMPfam_Cadherin_C	superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
NAV2	89797	genome.wustl.edu	36	11	20014109	20014109	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	11	20014109	20014109	G	A	SNP	NAV2	NM_182964	human	genbank	54_36p	+1	validated	missense	c.2866	p.G956S	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00033,HMMPfam_CH,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	-	no_errors
ZNF493	284443	genome.wustl.edu	36	19	21399588	21399588	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	19	21399588	21399588	C	G	SNP	ZNF493	NM_001076678	human	genbank	54_36p	+1	validated	missense	c.2287	p.H763D	0.044	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
IGLV4-3	0	genome.wustl.edu	36	22	21544134	21544134	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	22	21544134	21544134	C	T	SNP	IGLV4-3	ENST00000390318	human	ensembl	54_36p	+1	known	silent	c.291	p.T97	0.109	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406	-	no_stop_codon
CCDC149	91050	genome.wustl.edu	36	4	24442356	24442356	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	4	24442356	24442356	A	T	SNP	CCDC149	NM_173463	human	genbank	54_36p	-1	validated	missense	c.670	p.S224T	0.997	HMMPfam_DUF2353	HMMPfam_DUF2353	-	no_errors
IL21R	50615	genome.wustl.edu	36	16	27361798	27361798	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	16	27361798	27361798	C	A	SNP	IL21R	NM_021798	human	genbank	54_36p	+1	reviewed	missense	c.367	p.P123T	1.000	superfamily_Fibronectin type III	superfamily_Fibronectin type III,PatternScan_HEMATOPO_REC_S_F1	-	no_errors
MEP1B	4225	genome.wustl.edu	36	18	28051728	28051728	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	18	28051728	28051728	G	T	SNP	MEP1B	NM_005925	human	genbank	54_36p	+1	validated	missense	c.1893	p.Q631H	0.003	NULL	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00235,HMMPfam_Astacin,HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_TRAF domain-like,HMMSmart_SM00061,HMMPfam_MATH"	-	no_errors
AMAC1	146861	genome.wustl.edu	36	17	30544968	30544968	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	17	30544968	30544968	C	T	SNP	AMAC1	NM_152462	human	genbank	54_36p	-1	provisional	missense	c.472	p.D158N	0.993	HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE	HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors
EIF6	3692	genome.wustl.edu	36	20	33331326	33331326	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	20	33331326	33331326	C	G	SNP	EIF6	NM_002212	human	genbank	54_36p	-1	reviewed	missense	c.379	p.E127Q	1.000	superfamily_Pentein,HMMPfam_eIF-6,HMMSmart_SM00654	superfamily_Pentein,HMMPfam_eIF-6,HMMSmart_SM00654	-	no_errors
LOC646766	646766	genome.wustl.edu	36	6	34339284	34339284	+	RNA	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	6	34339284	34339284	C	T	SNP	LOC646766	XR_017605	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.995	-	-	-	pseudogene
ZNF536	9745	genome.wustl.edu	36	19	35628218	35628218	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	19	35628218	35628218	G	A	SNP	ZNF536	NM_014717	human	genbank	54_36p	+1	provisional	missense	c.1909	p.G637S	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
UNC5D	137970	genome.wustl.edu	36	8	35725739	35725739	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	8	35725739	35725739	A	G	SNP	UNC5D	NM_080872	human	genbank	54_36p	+1	validated	missense	c.1904	p.Q635R	1.000	HMMPfam_ZU5	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,PatternScan_SERPIN,HMMPfam_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
SIM2	6493	genome.wustl.edu	36	21	37020338	37020338	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	21	37020338	37020338	A	T	SNP	SIM2	NM_005069	human	genbank	54_36p	+1	reviewed	missense	c.592	p.M198L	1.000	NULL	HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3,HMMSmart_SM00086,HMMPfam_SIM_C	-	no_errors
TRPC4	7223	genome.wustl.edu	36	13	37123539	37123539	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	13	37123539	37123539	C	A	SNP	TRPC4	NM_016179	human	genbank	54_36p	-1	validated	nonsense	c.1942	p.E648*	1.000	NULL	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMPfam_TRP_2,HMMPfam_Ion_trans,PatternScan_RIBOSOMAL_S2_1	-	no_errors
MCART1	92014	genome.wustl.edu	36	9	37878029	37878029	+	Silent	SNP	A	A	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	9	37878029	37878029	A	G	SNP	MCART1	NM_033412	human	genbank	54_36p	-1	validated	silent	c.519	p.Y173	1.000	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
MACF1	23499	genome.wustl.edu	36	1	39523590	39523590	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	39523590	39523590	C	G	SNP	MACF1	NM_012090	human	genbank	54_36p	+1	reviewed	missense	c.1309	p.Q437E	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_SM00243	-	no_errors
LOC388907	388907	genome.wustl.edu	36	22	41502920	41502920	+	RNA	SNP	A	A	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	22	41502920	41502920	A	T	SNP	LOC388907	XR_017615	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ATP8A1	10396	genome.wustl.edu	36	4	42271449	42271449	+	Silent	SNP	A	A	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	4	42271449	42271449	A	C	SNP	ATP8A1	NM_006095	human	genbank	54_36p	-1	reviewed	silent	c.1239	p.T413	0.834	superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
CUL9	23113	genome.wustl.edu	36	6	43275717	43275717	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	6	43275717	43275717	T	G	SNP	CUL9	NM_015089	human	genbank	54_36p	+1	validated	missense	c.3229	p.C1077G	1.000	superfamily_ARM repeat	"superfamily_ARM repeat,superfamily_Galactose-binding domain-like,HMMPfam_APC10,PatternScan_CYTOCHROME_P450,HMMPfam_Cullin,superfamily_Cullin homology domain,superfamily_""Winged helix"" DNA-binding domain,PatternScan_CULLIN_1,superfamily_RING/U-box,HMMPfam_IBR,HMMSmart_SM00647,PatternScan_ZF_RING_1"	-	no_errors
TESK2	10420	genome.wustl.edu	36	1	45696041	45696041	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	45696041	45696041	C	A	SNP	TESK2	NM_007170	human	genbank	54_36p	-1	reviewed	missense	c.4	p.D2Y	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TMEM69	51249	genome.wustl.edu	36	1	45931868	45931868	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	45931868	45931868	C	T	SNP	TMEM69	NM_016486	human	genbank	54_36p	+1	validated	missense	c.448	p.P150S	1.000	NULL	NULL	-	no_errors
FYCO1	79443	genome.wustl.edu	36	3	45978826	45978826	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	3	45978826	45978826	T	C	SNP	FYCO1	NM_024513	human	genbank	54_36p	-1	validated	missense	c.3332	p.Q1111R	0.991	NULL	superfamily_Prefoldin,superfamily_tRNA-binding arm,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger,superfamily_Supernatant protein factor (SPF) C-terminal domain	-	no_errors
MBD1	4152	genome.wustl.edu	36	18	46057283	46057283	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	18	46057283	46057283	C	T	SNP	MBD1	NM_015846	human	genbank	54_36p	-1	reviewed	silent	c.309	p.Q103	0.000	NULL	HMMPfam_MBD,superfamily_DNA-binding domain,HMMSmart_SM00391,HMMPfam_zf-CXXC	-	no_errors
ENSG00000209709	0	genome.wustl.edu	36	11	46758180	46758180	+	RNA	SNP	A	A	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	11	46758180	46758180	A	G	SNP	ENSG00000209709	ENST00000386974	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0.998	-	-	-	pseudogene
NUP160	23279	genome.wustl.edu	36	11	47771018	47771018	+	Silent	SNP	G	G	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	11	47771018	47771018	G	T	SNP	NUP160	NM_015231	human	genbank	54_36p	-1	validated	silent	c.3346	p.R1116	0.997	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors
TUBA1B	10376	genome.wustl.edu	36	12	47809549	47809549	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	12	47809549	47809549	C	A	SNP	TUBA1B	NM_006082	human	genbank	54_36p	-1	validated	splice_site	c.226+1	e2+1	1.000	-	-	-	no_errors
TRPM7	54822	genome.wustl.edu	36	15	48722958	48722958	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	15	48722958	48722958	C	G	SNP	TRPM7	NM_017672	human	genbank	54_36p	-1	validated	missense	c.406	p.V136L	1.000	NULL	HMMPfam_Ion_trans,superfamily_Kinase_like,HMMSmart_Alpha_kinase,HMMPfam_Alpha_kinase	-	no_errors
LOC220429	220429	genome.wustl.edu	36	13	49363306	49363306	+	RNA	SNP	C	C	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	13	49363306	49363306	C	A	SNP	LOC220429	NR_003268	human	genbank	54_36p	+1	validated	rna	NULL	NULL	0.006	-	-	-	pseudogene
KRT2	3849	genome.wustl.edu	36	12	51331672	51331672	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	12	51331672	51331672	C	T	SNP	KRT2	NM_000423	human	genbank	54_36p	-1	reviewed	silent	c.522	p.V174	0.331	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
LOC400036	400036	genome.wustl.edu	36	12	51411323	51411323	+	RNA	SNP	A	A	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	12	51411323	51411323	A	T	SNP	LOC400036	XR_042304	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
KRT3	3850	genome.wustl.edu	36	12	51471745	51471745	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	12	51471745	51471745	C	G	SNP	KRT3	NM_057088	human	genbank	54_36p	-1	reviewed	missense	c.1311	p.K437N	1.000	HMMPfam_Filament	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
FAM21A	387680	genome.wustl.edu	36	10	51562663	51562663	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	10	51562663	51562663	G	A	SNP	FAM21A	NM_001005751	human	genbank	54_36p	+1	validated	silent	c.3978	p.K1326	0.987	NULL	NULL	-	no_errors
ZCCHC11	23318	genome.wustl.edu	36	1	52764088	52764088	+	Silent	SNP	T	T	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	52764088	52764088	T	C	SNP	ZCCHC11	NM_001009881	human	genbank	54_36p	-1	validated	silent	c.453	p.E151	0.967	NULL	PatternScan_ZINC_FINGER_C2H2_1,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc,superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_NTP_transf_2	-	no_errors
NEDD4	4734	genome.wustl.edu	36	15	53996047	53996047	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	15	53996047	53996047	T	G	SNP	NEDD4	NM_198400	human	genbank	54_36p	-1	validated	missense	c.275	p.Q92P	1.000	NULL	superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
PFKFB1	5207	genome.wustl.edu	36	X	54976981	54976981	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	X	54976981	54976981	C	G	SNP	PFKFB1	NM_002625	human	genbank	54_36p	-1	reviewed	missense	c.1354	p.E452Q	0.841	superfamily_SSF53254	HMMPfam_6PF2K,superfamily_SSF52540,HMMPfam_PGAM,superfamily_SSF53254,PatternScan_PG_MUTASE	-	no_errors
TIMELESS	8914	genome.wustl.edu	36	12	55110951	55110951	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	12	55110951	55110951	A	C	SNP	TIMELESS	NM_003920	human	genbank	54_36p	-1	validated	missense	c.890	p.F297C	1.000	NULL	HMMPfam_TIMELESS,HMMPfam_TIMELESS_C	-	no_errors
OR4C11	219429	genome.wustl.edu	36	11	55127996	55127996	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	11	55127996	55127996	C	A	SNP	OR4C11	NM_001004700	human	genbank	54_36p	-1	provisional	missense	c.430	p.V144F	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
TCF12	6938	genome.wustl.edu	36	15	55332904	55332904	+	Silent	SNP	C	C	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	15	55332904	55332904	C	A	SNP	TCF12	NM_207036	human	genbank	54_36p	+1	reviewed	silent	c.1413	p.L471	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors
KIAA1211	57482	genome.wustl.edu	36	4	56888622	56888622	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	4	56888622	56888622	G	A	SNP	KIAA1211	NM_020722	human	genbank	54_36p	+1	validated	silent	c.3597	p.R1199	0.999	NULL	NULL	-	no_errors
TUBB1	81027	genome.wustl.edu	36	20	57033026	57033026	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	20	57033026	57033026	G	T	SNP	TUBB1	NM_030773	human	genbank	54_36p	+1	validated	missense	c.1149	p.E383D	1.000	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	-	no_errors
EDN3	1908	genome.wustl.edu	36	20	57329482	57329482	+	Silent	SNP	T	T	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	20	57329482	57329482	T	C	SNP	EDN3	NM_000114	human	genbank	54_36p	+1	reviewed	silent	c.381	p.Y127	1.000	NULL	HMMPfam_Endothelin,HMMSmart_SM00272,PatternScan_ENDOTHELIN	-	no_errors
OR1S2	219958	genome.wustl.edu	36	11	57727340	57727340	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	11	57727340	57727340	A	C	SNP	OR1S2	NM_001004459	human	genbank	54_36p	-1	provisional	missense	c.890	p.M297R	0.271	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
KIR3DL1	3811	genome.wustl.edu	36	19	60023121	60023121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	19	60023121	60023121	G	A	SNP	KIR3DL1	NM_013289	human	genbank	54_36p	+1	reviewed	missense	c.497	p.R166H	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig	-	no_errors
LOC729209	729209	genome.wustl.edu	36	2	62227389	62227389	+	RNA	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	2	62227389	62227389	C	G	SNP	LOC729209	XR_015929	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
WDR89	112840	genome.wustl.edu	36	14	63135378	63135378	+	Silent	SNP	A	A	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	14	63135378	63135378	A	G	SNP	WDR89	NM_001008726	human	genbank	54_36p	-1	validated	silent	c.1036	p.L346	0.993	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors
SYNE2	23224	genome.wustl.edu	36	14	63695190	63695190	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	14	63695190	63695190	T	G	SNP	SYNE2	NM_182914	human	genbank	54_36p	+1	validated	missense	c.15887	p.F5296C	0.986	HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH	-	no_errors
PIK3R1	5295	genome.wustl.edu	36	5	67629161	67629161	+	Silent	SNP	A	A	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	5	67629161	67629161	A	C	SNP	PIK3R1	NM_181523	human	genbank	54_36p	+1	reviewed	silent	c.2151	p.P717	0.748	superfamily_SH2 domain	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
CPA6	57094	genome.wustl.edu	36	8	68581614	68581614	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	8	68581614	68581614	A	T	SNP	CPA6	NM_020361	human	genbank	54_36p	-1	validated	missense	c.598	p.W200R	1.000	superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14	superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_2	-	no_errors
LMOD3	56203	genome.wustl.edu	36	3	69254116	69254116	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	3	69254116	69254116	C	G	SNP	LMOD3	NM_198271	human	genbank	54_36p	-1	validated	missense	c.112	p.E38Q	0.986	NULL	HMMPfam_Tropomodulin,superfamily_RNI-like,HMMPfam_WH2	-	no_errors
FGF4	2249	genome.wustl.edu	36	11	69297269	69297269	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	11	69297269	69297269	G	T	SNP	FGF4	NM_002007	human	genbank	54_36p	-1	reviewed	missense	c.610	p.P204T	1.000	superfamily_Cytok_IL1_like,HMMSmart_FGF	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF,PatternScan_HBGF_FGF	-	no_errors
HYDIN	54768	genome.wustl.edu	36	16	69579802	69579802	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	16	69579802	69579802	C	G	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.3976	p.E1326Q	1.000	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TRHDE	29953	genome.wustl.edu	36	12	70966759	70966759	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	12	70966759	70966759	C	T	SNP	TRHDE	NM_013381	human	genbank	54_36p	+1	reviewed	missense	c.811	p.H271Y	1.000	superfamily_SSF63737,HMMPfam_Peptidase_M1	superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE	-	no_errors
TSHZ1	10194	genome.wustl.edu	36	18	71128911	71128911	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	18	71128911	71128911	A	G	SNP	TSHZ1	NM_005786	human	genbank	54_36p	+1	reviewed	missense	c.2426	p.K809R	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors
TNNI3K	51086	genome.wustl.edu	36	1	74778548	74778548	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	74778548	74778548	G	T	SNP	TNNI3K	NM_015978	human	genbank	54_36p	+1	validated	missense	c.2394	p.M798I	0.932	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
ZFHX4	79776	genome.wustl.edu	36	8	77928149	77928149	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	8	77928149	77928149	C	A	SNP	ZFHX4	NM_024721	human	genbank	54_36p	+1	validated	missense	c.6302	p.A2101D	0.998	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
SLC28A1	9154	genome.wustl.edu	36	15	83239291	83239291	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	15	83239291	83239291	C	T	SNP	SLC28A1	NM_004213	human	genbank	54_36p	+1	validated	silent	c.394	p.L132	0.081	NULL	HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C	-	no_errors
FLJ46321	389763	genome.wustl.edu	36	9	83795632	83795632	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	9	83795632	83795632	C	T	SNP	FLJ46321	NM_001001670	human	genbank	54_36p	+1	validated	silent	c.427	p.L143	0.000	NULL	NULL	-	no_errors
LRRIQ1	84125	genome.wustl.edu	36	12	84162710	84162710	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	12	84162710	84162710	A	G	SNP	LRRIQ1	NM_001079910	human	genbank	54_36p	+1	validated	missense	c.5029	p.S1677G	1.000	NULL	superfamily_RNI-like,HMMSmart_SM00015,HMMPfam_LRR_1,HMMSmart_SM00369,HMMPfam_IQ,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SH2D6	284948	genome.wustl.edu	36	2	85516079	85516079	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	2	85516079	85516079	G	A	SNP	SH2D6	NM_198482	human	genbank	54_36p	+1	provisional	silent	c.201	p.S67	0.032	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
LOC392242	392242	genome.wustl.edu	36	8	86743745	86743745	+	RNA	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	8	86743745	86743745	C	T	SNP	LOC392242	XR_041124	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
GJA10	84694	genome.wustl.edu	36	6	90661142	90661142	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	6	90661142	90661142	G	C	SNP	GJA10	NM_032602	human	genbank	54_36p	+1	validated	missense	c.234	p.W78C	1.000	HMMPfam_Connexin	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors
METAP2	10988	genome.wustl.edu	36	12	94431797	94431797	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	12	94431797	94431797	G	C	SNP	METAP2	NM_006838	human	genbank	54_36p	+1	reviewed	missense	c.1423	p.G475R	1.000	superfamily_Creatinase/aminopeptidase	"superfamily_Creatinase/aminopeptidase,HMMPfam_Peptidase_M24,PatternScan_MAP_2,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
PON3	5446	genome.wustl.edu	36	7	94827239	94827239	+	Silent	SNP	A	A	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	7	94827239	94827239	A	G	SNP	PON3	NM_000940	human	genbank	54_36p	-1	reviewed	silent	c.1047	p.T349	0.985	superfamily_Calcium-dependent phosphotriesterase	superfamily_Calcium-dependent phosphotriesterase,HMMPfam_Arylesterase	-	no_errors
DYNC1I1	1780	genome.wustl.edu	36	7	95564767	95564767	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	7	95564767	95564767	G	T	SNP	DYNC1I1	NM_004411	human	genbank	54_36p	+1	validated	missense	c.1864	p.A622S	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
TMTC4	84899	genome.wustl.edu	36	13	100062689	100062689	+	Silent	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	13	100062689	100062689	C	G	SNP	TMTC4	NM_032813	human	genbank	54_36p	-1	validated	silent	c.2028	p.S676	0.026	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	HMMPfam_DUF1736,superfamily_TPR-like,HMMPfam_TPR_2,HMMSmart_SM00028,HMMPfam_TPR_1	-	no_errors
AKT1	207	genome.wustl.edu	36	14	104313103	104313103	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	14	104313103	104313103	C	T	SNP	AKT1	NM_001014431	human	genbank	54_36p	-1	reviewed	silent	c.366	p.S122	0.087	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors
LOC642741	642741	genome.wustl.edu	36	6	108432524	108432524	+	RNA	SNP	G	G	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	6	108432524	108432524	G	C	SNP	LOC642741	XR_016455	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
PAPSS1	9061	genome.wustl.edu	36	4	108827778	108827778	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	4	108827778	108827778	C	T	SNP	PAPSS1	NM_005443	human	genbank	54_36p	-1	validated	missense	c.416	p.R139H	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_APS_kinase	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_APS_kinase,superfamily_PUA domain-like,HMMPfam_ATP-sulfurylase,superfamily_Nucleotidylyl transferase	-	no_errors
DOCK4	9732	genome.wustl.edu	36	7	111362915	111362915	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	7	111362915	111362915	T	C	SNP	DOCK4	NM_014705	human	genbank	54_36p	-1	reviewed	missense	c.982	p.N328D	1.000	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors
APC	324	genome.wustl.edu	36	5	112201974	112201974	+	Silent	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	5	112201974	112201974	C	G	SNP	APC	NM_000038	human	genbank	54_36p	+1	reviewed	silent	c.2784	p.A928	0.995	NULL	superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm,HMMPfam_APC_15aa,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_APC_basic,HMMPfam_EB1_binding	-	no_errors
LPAR1	1902	genome.wustl.edu	36	9	112677673	112677673	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	9	112677673	112677673	T	C	SNP	LPAR1	NM_001401	human	genbank	54_36p	-1	reviewed	missense	c.944	p.D315G	1.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
TRIM33	51592	genome.wustl.edu	36	1	114749859	114749859	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	114749859	114749859	G	C	SNP	TRIM33	NM_015906	human	genbank	54_36p	-1	reviewed	missense	c.2464	p.L822V	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00249,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00502,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	-	no_errors
GDAP2	54834	genome.wustl.edu	36	1	118250672	118250672	+	Silent	SNP	A	A	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	118250672	118250672	A	G	SNP	GDAP2	NM_017686	human	genbank	54_36p	-1	validated	silent	c.615	p.F205	1.000	superfamily_Macro domain-like	superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro,superfamily_CRAL/TRIO domain,HMMSmart_SM00516	-	no_errors
CLIP1	6249	genome.wustl.edu	36	12	121391277	121391277	+	Silent	SNP	A	A	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	12	121391277	121391277	A	G	SNP	CLIP1	NM_002956	human	genbank	54_36p	-1	validated	silent	c.2394	p.I798	0.064	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
INPP5F	22876	genome.wustl.edu	36	10	121546252	121546252	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	10	121546252	121546252	C	G	SNP	INPP5F	NM_014937	human	genbank	54_36p	+1	reviewed	missense	c.705	p.I235M	1.000	HMMPfam_Syja_N	HMMPfam_Syja_N	-	no_errors
SND1	27044	genome.wustl.edu	36	7	127134868	127134868	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	7	127134868	127134868	G	A	SNP	SND1	NM_014390	human	genbank	54_36p	+1	validated	silent	c.969	p.L323	1.000	superfamily_Staphylococal_nuclease_OB-fold,HMMSmart_SNc,HMMPfam_SNase	PatternScan_TNASE_1,superfamily_Staphylococal_nuclease_OB-fold,HMMSmart_SNc,HMMPfam_SNase,PatternScan_TNASE_2,HMMPfam_TUDOR,HMMSmart_TUDOR	-	no_errors
LRRC8A	56262	genome.wustl.edu	36	9	130710001	130710001	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	9	130710001	130710001	A	C	SNP	LRRC8A	NM_019594	human	genbank	54_36p	+1	reviewed	missense	c.737	p.K246T	1.000	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1	-	no_errors
GPR39	2863	genome.wustl.edu	36	2	133119298	133119298	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	2	133119298	133119298	G	A	SNP	GPR39	NM_001508	human	genbank	54_36p	+1	validated	silent	c.1011	p.S337	0.942	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
NAP5	344148	genome.wustl.edu	36	2	133259467	133259467	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	2	133259467	133259467	C	T	SNP	NAP5	NM_207363	human	genbank	54_36p	-1	validated	missense	c.1387	p.E463K	0.000	NULL	NULL	-	no_errors
FAM135B	51059	genome.wustl.edu	36	8	139233040	139233040	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	8	139233040	139233040	G	T	SNP	FAM135B	NM_015912	human	genbank	54_36p	-1	validated	missense	c.2860	p.Q954K	0.000	NULL	superfamily_alpha/beta-Hydrolases,HMMPfam_DUF676	-	no_errors
COL22A1	169044	genome.wustl.edu	36	8	139678329	139678329	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	8	139678329	139678329	T	A	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	missense	c.4432	p.T1478S	0.979	NULL	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors
PCDHB13	56123	genome.wustl.edu	36	5	140575757	140575757	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	5	140575757	140575757	C	T	SNP	PCDHB13	NM_018933	human	genbank	54_36p	+1	reviewed	silent	c.1878	p.T626	0.001	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
DIAPH1	1729	genome.wustl.edu	36	5	140936623	140936623	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	5	140936623	140936623	C	G	SNP	DIAPH1	NM_005219	human	genbank	54_36p	-1	reviewed	splice_site	c.1281-1	e13-1	1.000	-	-	-	no_errors
DENND3	22898	genome.wustl.edu	36	8	142255937	142255937	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	8	142255937	142255937	G	A	SNP	DENND3	NM_014957	human	genbank	54_36p	+1	validated	silent	c.2361	p.A787	0.004	NULL	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
IDS	3423	genome.wustl.edu	36	X	148376430	148376430	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	X	148376430	148376430	G	C	SNP	IDS	NM_000202	human	genbank	54_36p	-1	reviewed	missense	c.1111	p.P371A	0.000	superfamily_Alkaline phosphatase-like	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150542241	150542241	+	Silent	SNP	A	A	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	150542241	150542241	A	G	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	silent	c.11745	p.S3915	0.007	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors
SLC36A2	153201	genome.wustl.edu	36	5	150695269	150695269	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	5	150695269	150695269	G	A	SNP	SLC36A2	NM_181776	human	genbank	54_36p	-1	validated	silent	c.558	p.N186	0.983	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
AIM2	9447	genome.wustl.edu	36	1	157304989	157304989	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	157304989	157304989	T	C	SNP	AIM2	NM_004833	human	genbank	54_36p	-1	reviewed	missense	c.389	p.H130R	0.001	NULL	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_HIN	-	no_errors
GRIA2	2891	genome.wustl.edu	36	4	158476447	158476447	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	4	158476447	158476447	T	G	SNP	GRIA2	NM_000826	human	genbank	54_36p	+1	reviewed	missense	c.1441	p.W481G	1.000	superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd	superfamily_SSF53822,HMMPfam_ANF_receptor,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
TULP4	56995	genome.wustl.edu	36	6	158820788	158820788	+	Silent	SNP	C	C	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	6	158820788	158820788	C	A	SNP	TULP4	NM_020245	human	genbank	54_36p	+1	validated	silent	c.1044	p.I348	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,superfamily_TNF-like,HMMPfam_SOCS_box,superfamily_Transcriptional factor tubby C-terminal domain,HMMPfam_Tub	-	no_errors
SLC4A10	57282	genome.wustl.edu	36	2	162459580	162459580	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	2	162459580	162459580	A	T	SNP	SLC4A10	NM_022058	human	genbank	54_36p	+1	validated	missense	c.1250	p.Q417L	1.000	superfamily_Phoshotransferase/anion transport protein	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp,PatternScan_HTH_ARAC_FAMILY_1	-	no_errors
TLL1	7092	genome.wustl.edu	36	4	167155159	167155159	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	4	167155159	167155159	C	G	SNP	TLL1	NM_012464	human	genbank	54_36p	+1	reviewed	missense	c.1039	p.P347A	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Astacin"	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00235,HMMPfam_Astacin,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMPfam_EGF_CA,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF"	-	no_errors
LRP2	4036	genome.wustl.edu	36	2	169768942	169768942	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	2	169768942	169768942	A	G	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.7801	p.Y2601H	0.991	superfamily_SSF63825,HMMPfam_Ldl_recept_b,HMMSmart_LY	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_2,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1	-	no_errors
RAPGEF4	11069	genome.wustl.edu	36	2	173561202	173561202	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	2	173561202	173561202	T	A	SNP	RAPGEF4	NM_007023	human	genbank	54_36p	+1	validated	missense	c.1183	p.Y395N	1.000	superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	"superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMPfam_RA,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF"	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179182746	179182746	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	2	179182746	179182746	C	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	nonsense	c.39595	p.E13199*	0.998	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179301750	179301750	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	2	179301750	179301750	T	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.15416	p.E5139G	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	-	no_errors
SRGAP2	23380	genome.wustl.edu	36	1	204676985	204676985	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	204676985	204676985	G	A	SNP	SRGAP2	NM_015326	human	genbank	54_36p	+1	validated	missense	c.1343	p.S448N	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
LOC402116	402116	genome.wustl.edu	36	2	209753282	209753282	+	RNA	SNP	G	G	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	2	209753282	209753282	G	T	SNP	LOC402116	XR_017081	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
GLB1L	79411	genome.wustl.edu	36	2	219813055	219813055	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	2	219813055	219813055	C	G	SNP	GLB1L	NM_024506	human	genbank	54_36p	-1	provisional	missense	c.552	p.E184D	0.994	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases	-	no_errors
CAPN9	10753	genome.wustl.edu	36	1	228989900	228989900	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	228989900	228989900	C	T	SNP	CAPN9	NM_006615	human	genbank	54_36p	+1	reviewed	missense	c.1528	p.P510S	0.869	superfamily_EF-hand	superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III),superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
TARBP1	6894	genome.wustl.edu	36	1	232650896	232650896	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	232650896	232650896	C	T	SNP	TARBP1	NM_005646	human	genbank	54_36p	-1	reviewed	silent	c.1914	p.L638	0.604	NULL	superfamily_ARM-type_fold,superfamily_SSF75217,HMMPfam_SpoU_methylase	-	no_errors
HEATR1	55127	genome.wustl.edu	36	1	234788396	234788396	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	234788396	234788396	T	A	SNP	HEATR1	NM_018072	human	genbank	54_36p	-1	validated	missense	c.4968	p.K1656N	0.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_HEAT,HMMPfam_BP28CT	-	no_errors
OR2T2	401992	genome.wustl.edu	36	1	246683474	246683474	+	Silent	SNP	T	T	G	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	246683474	246683474	T	G	SNP	OR2T2	NM_001004136	human	genbank	54_36p	+1	provisional	silent	c.753	p.V251	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PGBD2	267002	genome.wustl.edu	36	1	247178875	247178875	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	1	247178875	247178875	T	C	SNP	PGBD2	NM_170725	human	genbank	54_36p	+1	validated	missense	c.1469	p.V490A	0.989	NULL	NULL	-	no_errors
DNAH9	1770	genome.wustl.edu	36	17	11678897	11678908	+	In_Frame_Del	DEL	CAGCACTCACAG	CAGCACTCACAG	-	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	CAGCACTCACAG	CAGCACTCACAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	17	11678897	11678908	CAGCACTCACAG	-	DEL	DNAH9	NM_001372	human	genbank	54_36p	+1	reviewed	in_frame_del	c.9464_9475	p.LTAA3157in_frame_del	0.994:0.266:0.314:0.319:0.141:0.701:0.695:0.008:0.000:0.000:0.000:0.996	NULL	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2	(deletion:cds_exon[11678680,11678940])	no_errors
NFKBIA	4792	genome.wustl.edu	36	14	34941731	34941742	+	In_Frame_Del	DEL	AGCATTGACATC	AGCATTGACATC	-	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	AGCATTGACATC	AGCATTGACATC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	14	34941731	34941742	AGCATTGACATC	-	DEL	NFKBIA	NM_020529	human	genbank	54_36p	-1	reviewed	in_frame_del	c.633_622	p.DVNA208in_frame_del	0.896:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	(deletion:cds_exon[34941728,34941816])	no_errors
NFKBIA	4792	genome.wustl.edu	36	14	34942305	34942309	+	Frame_Shift_Del	DEL	AGTGG	AGTGG	-	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	AGTGG	AGTGG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	14	34942305	34942309	AGTGG	-	DEL	NFKBIA	NM_020529	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.349_345	p.H116fs	1.000:1.000:1.000:1.000:0.938	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	(deletion:cds_exon[34942107,34942317])	no_errors
LOC100132440	0	genome.wustl.edu	36	16	51346196	51346197	+	Frame_Shift_Ins	INS	-	-	ACAC	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	16	51346196	51346197	-	ACAC	INS	LOC100132440	XM_001719251	human	genbank	54_36p	-1	model	frame_shift_ins	c.344_343	p.F115fs	0.000:0.000	NULL	NULL	-	no_errors
LOC644556	644556	genome.wustl.edu	36	4	63366409	63366413	+	Frame_Shift_Del	DEL	AATGC	AATGC	-	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	AATGC	AATGC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	4	63366409	63366413	AATGC	-	DEL	LOC644556	XM_001719457	human	genbank	54_36p	+1	model	frame_shift_del	c.343_347	p.N115fs	1.000:1.000:0.997:1.000:1.000	HMMPfam_Sec10	HMMPfam_Sec10	(deletion:cds_exon[63366067,63367107])	no_errors
BCL9L	283149	genome.wustl.edu	36	11	118277642	118277642	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	11	118277642	118277642	C	-	DEL	BCL9L	NM_182557	human	genbank	54_36p	-1	validated	frame_shift_del	c.2020	p.V674fs	0.249	NULL	PatternScan_RIBOSOMAL_S6E	(deletion:cds_exon[118276538,118278827])	no_errors
PCDHB4	56131	genome.wustl.edu	36	5	140483148	140483161	+	Frame_Shift_Del	DEL	AACAACAGCCCCGC	AACAACAGCCCCGC	-	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	AACAACAGCCCCGC	AACAACAGCCCCGC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	5	140483148	140483161	AACAACAGCCCCGC	-	DEL	PCDHB4	NM_018938	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.1384_1397	p.N462fs	1.000:1.000:1.000:1.000:1.000:0.975:0.941:0.939:0.944:0.969:0.978:0.956:0.967:0.407	superfamily_Cadherin,HMMPfam_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	(deletion:cds_exon[140481765,140484152])	no_errors
ENSG00000197199	0	genome.wustl.edu	36	2	170314856	170314859	+	Frame_Shift_Del	DEL	ATAC	ATAC	-	novel	unknown	TCGA-30-1855-01A-01W-0639-09	TCGA-30-1855-10A-01W-0639-09	ATAC	ATAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	746f60b1-46ab-4b56-a8ee-53e89525f0ce	96b69a67-1fbe-4113-8e34-bfaef2435c7d	2	170314856	170314859	ATAC	-	DEL	ENSG00000197199	ENST00000355513	human	ensembl	54_36p	-1	known	frame_shift_del	c.70_67	p.V23fs	0.000:0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[170314803,170314925])	no_start_codon:no_stop_codon
