Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
C1orf174	339448	genome.wustl.edu	36	1	3797186	3797186	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	1	3797186	3797186	G	A	SNP	C1orf174	NM_207356	human	genbank	54_36p	-1	validated	missense	c.425	p.P142L	0.001	NULL	NULL	-	no_errors
C10orf18	54906	genome.wustl.edu	36	10	5831431	5831431	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	10	5831431	5831431	C	G	SNP	C10orf18	NM_017782	human	genbank	54_36p	+1	validated	missense	c.6041	p.S2014C	0.000	NULL	NULL	-	no_errors
AIPL1	23746	genome.wustl.edu	36	17	6269836	6269836	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	17	6269836	6269836	C	T	SNP	AIPL1	NM_014336	human	genbank	54_36p	-1	reviewed	missense	c.823	p.A275T	1.000	superfamily_SSF48452	superfamily_SSF54534,superfamily_SSF48452	-	no_errors
ETV1	2115	genome.wustl.edu	36	7	13902024	13902024	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	7	13902024	13902024	C	T	SNP	ETV1	ENST00000405358	human	ensembl	54_36p	-1	known	missense	c.1468	p.V490M	1.000	NULL	HMMPfam_ETS_PEA3_N,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2	-	no_errors
OR7C2	26658	genome.wustl.edu	36	19	14913271	14913271	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	19	14913271	14913271	T	C	SNP	OR7C2	ENST00000380000	human	ensembl	54_36p	+1	known	missense	c.97	p.F33L	0.000	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ITGA8	8516	genome.wustl.edu	36	10	15753629	15753629	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	10	15753629	15753629	A	G	SNP	ITGA8	NM_003638	human	genbank	54_36p	-1	provisional	missense	c.826	p.F276L	1.000	superfamily_SSF69318,HMMSmart_Int_alpha	superfamily_SSF69318,HMMSmart_Int_alpha,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
DDI2	84301	genome.wustl.edu	36	1	15825782	15825782	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	1	15825782	15825782	A	G	SNP	DDI2	NM_032341	human	genbank	54_36p	+1	provisional	missense	c.170	p.N57S	1.000	superfamily_Ubiquitin-like,HMMPfam_ubiquitin	superfamily_Ubiquitin-like,HMMPfam_ubiquitin,HMMPfam_Asp_protease,superfamily_Acid proteases	-	no_errors
SOSTDC1	25928	genome.wustl.edu	36	7	16471785	16471785	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	7	16471785	16471785	G	C	SNP	SOSTDC1	NM_015464	human	genbank	54_36p	-1	reviewed	missense	c.34	p.P12A	0.983	HMMPfam_Sclerostin	HMMPfam_Sclerostin	-	no_errors
PADI2	11240	genome.wustl.edu	36	1	17295026	17295026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	1	17295026	17295026	G	A	SNP	PADI2	NM_007365	human	genbank	54_36p	-1	reviewed	missense	c.376	p.R126W	1.000	HMMPfam_PAD_M,superfamily_PAD_central	HMMPfam_PAD_N,superfamily_Cupredoxin,HMMPfam_PAD_M,superfamily_PAD_central,HMMPfam_PAD,superfamily_SSF55909	-	no_errors
GYS2	2998	genome.wustl.edu	36	12	21584681	21584681	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	12	21584681	21584681	C	T	SNP	GYS2	NM_021957	human	genbank	54_36p	-1	validated	missense	c.1739	p.R580H	1.000	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
ZNF43	7594	genome.wustl.edu	36	19	21783272	21783272	+	Silent	SNP	A	A	G	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	19	21783272	21783272	A	G	SNP	ZNF43	NM_003423	human	genbank	54_36p	-1	validated	silent	c.1407	p.L469	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF645	158506	genome.wustl.edu	36	X	22201877	22201877	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	X	22201877	22201877	C	T	SNP	ZNF645	NM_152577	human	genbank	54_36p	+1	provisional	missense	c.848	p.A283V	0.013	NULL	PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57850,HMMSmart_RING,PatternScan_ZF_RING_1,HMMSmart_ZnF_C2H2	-	no_errors
PSME2	5721	genome.wustl.edu	36	14	23683281	23683281	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	14	23683281	23683281	C	T	SNP	PSME2	NM_002818	human	genbank	54_36p	-1	reviewed	missense	c.457	p.V153I	0.965	superfamily_Prot_act_regA,HMMPfam_PA28_beta	superfamily_Prot_act_regA,HMMPfam_PA28_alpha,HMMPfam_PA28_beta	-	no_errors
LOC730087	730087	genome.wustl.edu	36	19	23907656	23907656	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	19	23907656	23907656	C	G	SNP	LOC730087	XM_001726951	human	genbank	54_36p	+1	model	missense	c.1141	p.L381V	0.039	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC100133222	0	genome.wustl.edu	36	12	25453624	25453624	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	12	25453624	25453624	C	T	SNP	LOC100133222	XM_001723495	human	genbank	54_36p	-1	model	missense	c.23	p.R8K	1.000	superfamily_Ribosomal protein L39e	superfamily_Ribosomal protein L39e,HMMPfam_Ribosomal_L39	-	pseudogene
MYO3A	53904	genome.wustl.edu	36	10	26355387	26355387	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	10	26355387	26355387	G	T	SNP	MYO3A	NM_017433	human	genbank	54_36p	+1	reviewed	missense	c.873	p.E291D	0.018	superfamily_Kinase_like,superfamily_SSF52540	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ	-	no_errors
MYLK2	85366	genome.wustl.edu	36	20	29883522	29883522	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	20	29883522	29883522	G	A	SNP	MYLK2	NM_033118	human	genbank	54_36p	+1	reviewed	silent	c.1632	p.A544	0.102	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
GALNT14	79623	genome.wustl.edu	36	2	31022211	31022211	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	2	31022211	31022211	G	A	SNP	GALNT14	NM_024572	human	genbank	54_36p	-1	validated	silent	c.684	p.I228	0.984	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	-	no_errors
ELP4	26610	genome.wustl.edu	36	11	31487972	31487972	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	11	31487972	31487972	G	C	SNP	ELP4	NM_019040	human	genbank	54_36p	+1	reviewed	missense	c.65	p.S22T	0.014	NULL	HMMPfam_PAXNEB	-	no_errors
LARGE	9215	genome.wustl.edu	36	22	32030283	32030283	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	22	32030283	32030283	G	A	SNP	LARGE	NM_004737	human	genbank	54_36p	-1	reviewed	silent	c.1662	p.I554	1.000	NULL	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8	-	no_errors
NRG1	3084	genome.wustl.edu	36	8	32591584	32591584	+	Silent	SNP	T	T	G	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	8	32591584	32591584	T	G	SNP	NRG1	NM_013956	human	genbank	54_36p	+1	reviewed	silent	c.411	p.T137	0.851	NULL	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,HMMPfam_Neuregulin	-	no_errors
MMP24	10893	genome.wustl.edu	36	20	33303174	33303174	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	20	33303174	33303174	G	A	SNP	MMP24	NM_006690	human	genbank	54_36p	+1	reviewed	missense	c.298	p.V100I	0.910	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ADC	113451	genome.wustl.edu	36	1	33356180	33356180	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	1	33356180	33356180	C	T	SNP	ADC	NM_052998	human	genbank	54_36p	+1	validated	missense	c.1120	p.P374S	1.000	superfamily_Alanine racemase C-terminal domain-like,HMMPfam_Orn_DAP_Arg_deC	HMMPfam_Orn_Arg_deC_N,superfamily_PLP-binding barrel,PatternScan_ODR_DC_2_1,PatternScan_ODR_DC_2_2,superfamily_Alanine racemase C-terminal domain-like,HMMPfam_Orn_DAP_Arg_deC	-	no_errors
KCNU1	0	genome.wustl.edu	36	8	36909635	36909635	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	8	36909635	36909635	G	T	SNP	KCNU1	NM_001031836	human	genbank	54_36p	+1	validated	missense	c.2971	p.D991Y	0.520	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_NAD(P)-bd,HMMPfam_BK_channel_a	-	no_errors
DDX17	10521	genome.wustl.edu	36	22	37213903	37213903	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	22	37213903	37213903	C	T	SNP	DDX17	NM_001098504	human	genbank	54_36p	-1	reviewed	silent	c.1611	p.L537	0.891	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
CACNA1I	8911	genome.wustl.edu	36	22	38366939	38366939	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	22	38366939	38366939	G	A	SNP	CACNA1I	NM_021096	human	genbank	54_36p	+1	reviewed	missense	c.862	p.E288K	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
ATP4A	495	genome.wustl.edu	36	19	40745314	40745314	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	19	40745314	40745314	G	A	SNP	ATP4A	NM_000704	human	genbank	54_36p	-1	reviewed	missense	c.283	p.R95W	0.016	HMMPfam_Cation_ATPase_N,superfamily_SSF81665	HMMPfam_H-K_ATPase_N,HMMPfam_Cation_ATPase_N,superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Cation_ATPase_C	-	no_errors
HECW1	23072	genome.wustl.edu	36	7	43450772	43450772	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	7	43450772	43450772	G	A	SNP	HECW1	NM_015052	human	genbank	54_36p	+1	validated	silent	c.1476	p.T492	0.000	NULL	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
SNTG1	54212	genome.wustl.edu	36	8	51513713	51513713	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	8	51513713	51513713	G	T	SNP	SNTG1	NM_018967	human	genbank	54_36p	+1	reviewed	splice_site	c.219+1	e3+1	1.000	-	-	-	no_errors
LOC100129708	0	genome.wustl.edu	36	X	51681678	51681678	+	RNA	SNP	C	C	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	X	51681678	51681678	C	A	SNP	LOC100129708	XR_042332	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
GPR32	2854	genome.wustl.edu	36	19	55966663	55966663	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	19	55966663	55966663	A	C	SNP	GPR32	NM_001506	human	genbank	54_36p	+1	provisional	missense	c.994	p.T332P	0.010	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SERPINB8	5271	genome.wustl.edu	36	18	59801820	59801820	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	18	59801820	59801820	G	C	SNP	SERPINB8	NM_002640	human	genbank	54_36p	+1	validated	missense	c.452	p.G151A	0.688	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors
NRXN2	9379	genome.wustl.edu	36	11	64172347	64172347	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	11	64172347	64172347	T	G	SNP	NRXN2	NM_015080	human	genbank	54_36p	-1	reviewed	missense	c.3323	p.Q1108P	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00181,HMMPfam_EGF	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00294	-	no_errors
ABCA8	10351	genome.wustl.edu	36	17	64383098	64383098	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	17	64383098	64383098	C	G	SNP	ABCA8	NM_007168	human	genbank	54_36p	-1	reviewed	missense	c.4409	p.G1470A	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors
CYP7B1	9420	genome.wustl.edu	36	8	65691054	65691054	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	8	65691054	65691054	C	T	SNP	CYP7B1	NM_004820	human	genbank	54_36p	-1	reviewed	missense	c.598	p.V200I	0.001	superfamily_Cytochrome P450	superfamily_Cytochrome P450,HMMPfam_p450	-	no_errors
LBXCOR1	390598	genome.wustl.edu	36	15	65912595	65912595	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	15	65912595	65912595	A	G	SNP	LBXCOR1	NM_001031807	human	genbank	54_36p	+1	provisional	missense	c.2617	p.N873D	1.000	NULL	HMMPfam_Ski_Sno,superfamily_Putativ_DNA_bind,superfamily_SAND_like,HMMPfam_c-SKI_SMAD_bind	-	no_errors
ENSG00000188463	0	genome.wustl.edu	36	7	71915885	71915885	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	7	71915885	71915885	C	A	SNP	ENSG00000188463	ENST00000389196	human	ensembl	54_36p	-1	known	missense	c.433	p.V145F	1.000	HMMPfam_Flavodoxin_1,superfamily_SSF52218	HMMPfam_Flavodoxin_1,superfamily_SSF52218	-	no_errors
DIS3	22894	genome.wustl.edu	36	13	72243228	72243228	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	13	72243228	72243228	G	A	SNP	DIS3	NM_014953	human	genbank	54_36p	-1	validated	silent	c.1662	p.D554	0.993	HMMPfam_RNB	superfamily_PIN domain-like,HMMSmart_SM00670,HMMPfam_RNB,PatternScan_RIBONUCLEASE_II	-	no_errors
KCNQ5	56479	genome.wustl.edu	36	6	73843828	73843828	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	6	73843828	73843828	G	A	SNP	KCNQ5	NM_019842	human	genbank	54_36p	+1	reviewed	missense	c.679	p.A227T	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors
RASGRF1	5923	genome.wustl.edu	36	15	77137781	77137781	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	15	77137781	77137781	G	A	SNP	RASGRF1	NM_002891	human	genbank	54_36p	-1	reviewed	missense	c.481	p.R161W	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-	no_errors
C11orf67	28971	genome.wustl.edu	36	11	77258487	77258487	+	Silent	SNP	C	C	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	11	77258487	77258487	C	T	SNP	C11orf67	NM_024684	human	genbank	54_36p	+1	predicted	silent	c.204	p.G68	1.000	superfamily_Hypothetical protein MT938 (MTH938),HMMPfam_DUF498	superfamily_Hypothetical protein MT938 (MTH938),HMMPfam_DUF498	-	no_errors
FLJ25770	339965	genome.wustl.edu	36	4	77491926	77491926	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	4	77491926	77491926	A	T	SNP	FLJ25770	NM_001042784	human	genbank	54_36p	-1	validated	missense	c.2509	p.L837I	0.999	NULL	NULL	-	no_errors
TYR	7299	genome.wustl.edu	36	11	88668071	88668071	+	Silent	SNP	A	A	G	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	11	88668071	88668071	A	G	SNP	TYR	NM_000372	human	genbank	54_36p	+1	reviewed	silent	c.1479	p.A493	0.000	NULL	superfamily_Di-copper centre-containing domain,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,PatternScan_TYROSINASE_2	-	no_errors
SERPINA4	5267	genome.wustl.edu	36	14	94105588	94105588	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	14	94105588	94105588	T	A	SNP	SERPINA4	NM_006215	human	genbank	54_36p	+1	provisional	missense	c.1187	p.I396N	0.000	superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN	superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors
OR4F13P	0	genome.wustl.edu	36	15	100206948	100206948	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	15	100206948	100206948	T	C	SNP	OR4F13P	ENST00000369688	human	ensembl	54_36p	+1	known	missense	c.460	p.Y154H	0.068	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
MYH15	22989	genome.wustl.edu	36	3	109646218	109646218	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	3	109646218	109646218	G	A	SNP	MYH15	NM_014981	human	genbank	54_36p	-1	validated	missense	c.2674	p.L892F	0.885	NULL	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1,superfamily_Spectrin repeat	-	no_errors
LOC441034	441034	genome.wustl.edu	36	4	113929233	113929233	+	RNA	SNP	G	G	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	4	113929233	113929233	G	T	SNP	LOC441034	XR_016809	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ENPP2	5168	genome.wustl.edu	36	8	120702939	120702939	+	Silent	SNP	G	G	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	8	120702939	120702939	G	T	SNP	ENPP2	NM_006209	human	genbank	54_36p	-1	reviewed	silent	c.294	p.A98	0.991	HMMSmart_SM00201,HMMPfam_Somatomedin_B	HMMSmart_SM00201,HMMPfam_Somatomedin_B,superfamily_Somatomedin B domain,PatternScan_SMB_1,superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest,superfamily_His-Me finger endonucleases,HMMSmart_SM00477,HMMPfam_Endonuclease_NS	-	no_errors
SPAM1	6677	genome.wustl.edu	36	7	123381080	123381080	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	7	123381080	123381080	T	C	SNP	SPAM1	NM_003117	human	genbank	54_36p	+1	reviewed	missense	c.220	p.S74P	0.087	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat	-	no_errors
THSD7B	80731	genome.wustl.edu	36	2	138116624	138116624	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	2	138116624	138116624	C	G	SNP	THSD7B	NM_001080427	human	genbank	54_36p	+1	provisional	missense	c.3809	p.T1270S	0.997	HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_TSP-1 type 1 repeat	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors
ZNF251	90987	genome.wustl.edu	36	8	145918478	145918478	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	8	145918478	145918478	T	C	SNP	ZNF251	NM_138367	human	genbank	54_36p	-1	validated	missense	c.1376	p.K459R	0.996	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
CNTNAP2	26047	genome.wustl.edu	36	7	146460324	146460324	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	7	146460324	146460324	G	A	SNP	CNTNAP2	NM_014141	human	genbank	54_36p	+1	reviewed	missense	c.1138	p.A380T	1.000	superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like,PatternScan_GLYCO_HORMONE_BETA_1,HMMSmart_SM00294	-	no_errors
NBPF15	284565	genome.wustl.edu	36	1	146849054	146849054	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	1	146849054	146849054	C	T	SNP	NBPF15	NM_173638	human	genbank	54_36p	+1	predicted	nonsense	c.664	p.Q222*	0.016	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_errors
MBNL1	4154	genome.wustl.edu	36	3	153633244	153633244	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	3	153633244	153633244	G	T	SNP	MBNL1	NM_207293	human	genbank	54_36p	+1	validated	missense	c.394	p.A132S	1.000	NULL	HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger	-	no_errors
BAZ2B	29994	genome.wustl.edu	36	2	160018421	160018421	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	2	160018421	160018421	G	C	SNP	BAZ2B	NM_013450	human	genbank	54_36p	-1	validated	missense	c.283	p.L95V	1.000	NULL	superfamily_DNA-binding domain,HMMPfam_MBD,HMMSmart_SM00391,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
uc003mag.2	0	genome.wustl.edu	36	5	169242985	169242985	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	5	169242985	169242985	C	G	SNP	uc003mag.2	ENST00000377365	human	ensembl	54_36p	-1	known	missense	c.496	p.V166L	0.000	NULL	NULL	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179194549	179194549	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	2	179194549	179194549	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.33193	p.R11065W	0.886	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
LHX9	56956	genome.wustl.edu	36	1	196155912	196155912	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	1	196155912	196155912	A	G	SNP	LHX9	NM_020204	human	genbank	54_36p	+1	reviewed	missense	c.362	p.K121R	1.000	HMMSmart_SM00132,HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
PGAP1	80055	genome.wustl.edu	36	2	197463811	197463811	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	2	197463811	197463811	G	T	SNP	PGAP1	NM_024989	human	genbank	54_36p	-1	validated	missense	c.1159	p.Q387K	1.000	NULL	HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases	-	no_errors
RPS6KC1	26750	genome.wustl.edu	36	1	211481670	211481670	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	1	211481670	211481670	C	T	SNP	RPS6KC1	NM_012424	human	genbank	54_36p	+1	validated	missense	c.2228	p.A743V	0.000	NULL	superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMSmart_SM00745,HMMPfam_MIT,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase	-	no_errors
PECR	55825	genome.wustl.edu	36	2	216639486	216639486	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	2	216639486	216639486	C	T	SNP	PECR	NM_018441	human	genbank	54_36p	-1	validated	missense	c.125	p.G42E	0.990	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	-	no_errors
OBSCN	84033	genome.wustl.edu	36	1	226546250	226546250	+	Silent	SNP	G	G	A	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	1	226546250	226546250	G	A	SNP	OBSCN	NM_001098623	human	genbank	54_36p	+1	reviewed	silent	c.10368	p.L3456	0.966	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
LRRN4	164312	genome.wustl.edu	36	20	5969808	5969809	+	In_Frame_Ins	INS	-	-	CAA	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	20	5969808	5969809	-	CAA	INS	LRRN4	NM_152611	human	genbank	54_36p	-1	validated	in_frame_ins	c.2083_2082	p.695in_frame_insL	0.610:0.609	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
DOPEY2	9980	genome.wustl.edu	36	21	36525012	36525012	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	21	36525012	36525012	T	-	DEL	DOPEY2	NM_005128	human	genbank	54_36p	+1	validated	frame_shift_del	c.2060	p.I687fs	0.993	NULL	HMMPfam_Dopey_N	(deletion:cds_exon[36524618,36525302])	no_errors
NIPBL	25836	genome.wustl.edu	36	5	37022110	37022110	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	5	37022110	37022110	C	-	DEL	NIPBL	NM_133433	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.3071	p.S1024fs	1.000	superfamily_ARM repeat	superfamily_ARM repeat	(deletion:cds_exon[37020535,37022160])	no_errors
IRF5	3663	genome.wustl.edu	36	7	128374588	128374617	+	Splice_Site	DEL	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	7	128374588	128374617	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	DEL	IRF5	NM_002200	human	genbank	54_36p	+1	reviewed	splice_site_del	c.541+9_541+1	e6-1	0.714:0.698:0.682:0.666:0.650:0.635:0.620:0.605:0.590:0.575:0.561:0.546:0.532:0.517:0.503:0.489:0.475:0.461:0.447:0.433:0.419:0.405:0.391:0.377:0.363:0.349:0.335:0.321:0.306:0.292	-	-	(deletion:intron[128374580,128374609], cds_exon[128374610,128374825])	no_errors
LOC732043	732043	genome.wustl.edu	36	2	130902082	130902083	+	RNA	INS	-	-	TTG	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	2	130902082	130902083	-	TTG	INS	LOC732043	XR_037773	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000:0.000	-	-	-	pseudogene
PDLIM4	8572	genome.wustl.edu	36	5	131634585	131634585	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	5	131634585	131634585	C	-	DEL	PDLIM4	NM_003687	human	genbank	54_36p	+1	validated	frame_shift_del	c.406	p.P136fs	0.033	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	(deletion:cds_exon[131634507,131634685])	no_errors
ENSG00000201699	0	genome.wustl.edu	36	1	143245544	143245545	+	RNA	DEL	CG	CG	-	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	CG	CG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	1	143245544	143245545	CG	-	DEL	ENSG00000201699	ENST00000364829	human	ensembl	54_36p	+1	known	rna	NULL	NULL	1.000:1.000	-	-	(deletion:rna[143245395,143245556])	no_errors
CHN1	1123	genome.wustl.edu	36	2	175450826	175450826	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-30-1856-01A-01W-0639-09	TCGA-30-1856-10A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8e2d1757-2105-4177-9215-e3cac155e7c9	8f168457-3a7e-4b59-9079-662580a8b8ae	2	175450826	175450826	C	-	DEL	CHN1	NM_001025201	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.537	p.S180fs	0.551	superfamily_Cysteine-rich domain	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	(deletion:cds_exon[175450814,175451102])	no_errors
