Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ABCF2	10061	broad.mit.edu	36	7	150543644	150543644	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	7	150543644	150543644	G	C	SNP	ABCF2	NM_005692	human	genbank	54_36p	-1	reviewed	nonsense	c.1509	p.Y503*	0.99	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ACACB	32	broad.mit.edu	36	12	108089161	108089161	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	12	108089161	108089161	G	A	SNP	ACACB	NM_001093	human	genbank	54_36p	1	reviewed	missense	c.766	p.G256R	1	NULL	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain,superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Rudiment single hybrid motif,HMMPfam_Biotin_carb_C,superfamily_Single hybrid motif,HMMPfam_Biotin_lipoyl,HMMPfam_ACC_central,superfamily_ClpP/crotonase,HMMPfam_Carboxyl_trans	-	no_errors
ALG10B	144245	broad.mit.edu	36	12	36997041	36997041	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	12	36997041	36997041	T	A	SNP	ALG10B	NM_001013620	human	genbank	54_36p	1	validated	missense	c.79	p.F27I	1	NULL	HMMPfam_DIE2_ALG10	-	no_errors
ATAD2	29028	broad.mit.edu	36	8	124430768	124430768	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	8	124430768	124430768	G	T	SNP	ATAD2	NM_014109	human	genbank	54_36p	-1	reviewed	missense	c.1744	p.P582T	1	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_YL1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CACNA1A	773	broad.mit.edu	36	19	13426965	13426965	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	19	13426965	13426965	G	A	SNP	CACNA1A	ENST00000325084	human	ensembl	54_36p	-1	known	nonsense	c.355	p.Q119*	1	superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CDK5RAP1	51654	broad.mit.edu	36	20	31424166	31424166	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	20	31424166	31424166	T	A	SNP	CDK5RAP1	NM_016408	human	genbank	54_36p	-1	reviewed	splice_site	c.1206-2	e9-2	1	-	-	-	no_errors
CSMD3	114788	broad.mit.edu	36	8	113472187	113472187	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	8	113472187	113472187	C	G	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.5816	p.C1939S	1	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
EPHB6	2051	broad.mit.edu	36	7	142271518	142271518	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	7	142271518	142271518	G	T	SNP	EPHB6	NM_004445	human	genbank	54_36p	1	reviewed	missense	c.63	p.L21F	0.98	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SAM/Pointed domain	-	no_errors
EYA1	2138	broad.mit.edu	36	8	72344570	72344570	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	8	72344570	72344570	G	A	SNP	EYA1	NM_000503	human	genbank	54_36p	-1	reviewed	missense	c.1009	p.H337Y	1	HMMPfam_Hydrolase	HMMPfam_Hydrolase	-	no_errors
FAM108A1	81926	broad.mit.edu	36	19	1828545	1828545	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	19	1828545	1828545	G	A	SNP	FAM108A1	NM_031213	human	genbank	54_36p	-1	validated	silent	c.822	p.P274	1	HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases	PatternScan_TONB_DEPENDENT_REC_1,superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_2	-	no_errors
FAM73A	374986	broad.mit.edu	36	1	78081625	78081625	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	1	78081625	78081625	G	T	SNP	FAM73A	NM_198549	human	genbank	54_36p	1	predicted	missense	c.941	p.G314V	0.97	HMMPfam_DUF2217	HMMPfam_DUF2217	-	no_errors
FAT2	2196	broad.mit.edu	36	5	150872082	150872082	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	5	150872082	150872082	A	G	SNP	FAT2	NM_001447	human	genbank	54_36p	-1	reviewed	silent	c.11742	p.D3914	0.95	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
FPGS	2356	broad.mit.edu	36	9	129609159	129609159	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	9	129609159	129609159	G	A	SNP	FPGS	NM_004957	human	genbank	54_36p	1	reviewed	missense	c.473	p.R158H	0.99	superfamily_MurD-like peptide ligases catalytic domain	superfamily_MurD-like peptide ligases catalytic domain,PatternScan_FOLYLPOLYGLU_SYNT_1,PatternScan_FOLYLPOLYGLU_SYNT_2,HMMPfam_Mur_ligase_C,superfamily_MurD-like peptide ligases peptide-binding domain	-	no_errors
GABPA	2551	broad.mit.edu	36	21	26043237	26043237	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	21	26043237	26043237	T	C	SNP	GABPA	NM_002040	human	genbank	54_36p	1	validated	missense	c.242	p.L81S	1	NULL	superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2	-	no_errors
GPRC6A	222545	broad.mit.edu	36	6	117234278	117234278	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	6	117234278	117234278	T	C	SNP	GPRC6A	NM_148963	human	genbank	54_36p	-1	validated	missense	c.1283	p.D428G	0.97	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3	-	no_errors
HSPA2	3306	broad.mit.edu	36	14	64078539	64078539	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	14	64078539	64078539	G	A	SNP	HSPA2	NM_021979	human	genbank	54_36p	1	validated	missense	c.1219	p.E407K	1	HMMPfam_HSP70,superfamily_SSF100920	superfamily_SSF53067,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF100920,superfamily_SSF100934	-	no_errors
LYPD6B	130576	broad.mit.edu	36	2	149777755	149777755	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	2	149777755	149777755	C	T	SNP	LYPD6B	NM_177964	human	genbank	54_36p	1	provisional	missense	c.332	p.T111I	1	superfamily_SSF57302,HMMSmart_LU	superfamily_SSF57302,HMMSmart_LU	-	no_errors
LZTS2	84445	broad.mit.edu	36	10	102753460	102753460	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	10	102753460	102753460	T	A	SNP	LZTS2	NM_032429	human	genbank	54_36p	1	provisional	missense	c.615	p.F205L	0.96	NULL	HMMPfam_Fez1	-	no_errors
MED12L	116931	broad.mit.edu	36	3	152393987	152393987	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	3	152393987	152393987	A	G	SNP	MED12L	NM_053002	human	genbank	54_36p	1	validated	silent	c.1989	p.G663	1	NULL	HMMPfam_Med12	-	no_errors
MON2	23041	broad.mit.edu	36	12	61258508	61258508	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	12	61258508	61258508	C	A	SNP	MON2	NM_015026	human	genbank	54_36p	1	validated	missense	c.4531	p.L1511I	1	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_DUF1981	-	no_errors
MS4A8B	83661	broad.mit.edu	36	11	60227519	60227519	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	11	60227519	60227519	C	G	SNP	MS4A8B	NM_031457	human	genbank	54_36p	1	reviewed	nonsense	c.312	p.Y104*	0.45	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
NF1	4763	broad.mit.edu	36	17	26678731	26678731	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	17	26678731	26678731	C	A	SNP	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	nonsense	c.5357	p.S1786*	1	NULL	HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP	-	no_errors
NUAK1	9891	broad.mit.edu	36	12	104985605	104985605	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	12	104985605	104985605	C	T	SNP	NUAK1	NM_014840	human	genbank	54_36p	-1	validated	missense	c.1091	p.R364Q	1	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
OVCH1	341350	broad.mit.edu	36	12	29521596	29521596	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	12	29521596	29521596	T	C	SNP	OVCH1	NM_183378	human	genbank	54_36p	-1	validated	silent	c.1191	p.E397	0	superfamily_Spermadhesin CUB domain	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
PCDHA5	56143	broad.mit.edu	36	5	140182202	140182202	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	5	140182202	140182202	G	A	SNP	PCDHA5	NM_018908	human	genbank	54_36p	1	reviewed	missense	c.658	p.E220K	0.54	superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCDHGB1	56104	broad.mit.edu	36	5	140711189	140711189	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	5	140711189	140711189	C	A	SNP	PCDHGB1	NM_018922	human	genbank	54_36p	1	reviewed	missense	c.1178	p.T393N	0.05	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PLEKHG1	57480	broad.mit.edu	36	6	151096881	151096881	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	6	151096881	151096881	C	A	SNP	PLEKHG1	NM_001029884	human	genbank	54_36p	1	provisional	missense	c.371	p.T124N	1	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
PRKD1	5587	broad.mit.edu	36	14	29169942	29169942	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	14	29169942	29169942	C	T	SNP	PRKD1	NM_002742	human	genbank	54_36p	-1	validated	missense	c.1429	p.V477I	1	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
SALL4	57167	broad.mit.edu	36	20	49841662	49841662	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	20	49841662	49841662	G	C	SNP	SALL4	NM_020436	human	genbank	54_36p	-1	reviewed	missense	c.767	p.T256S	0.98	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
SDK1	221935	broad.mit.edu	36	7	4055543	4055543	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	7	4055543	4055543	C	T	SNP	SDK1	NM_152744	human	genbank	54_36p	1	validated	silent	c.2640	p.A880	0.68	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
TAOK1	57551	broad.mit.edu	36	17	24893738	24893738	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	17	24893738	24893738	C	T	SNP	TAOK1	NM_020791	human	genbank	54_36p	1	validated	missense	c.2578	p.R860C	1	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
TCHHL1	126637	broad.mit.edu	36	1	150326075	150326075	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	1	150326075	150326075	T	G	SNP	TCHHL1	NM_001008536	human	genbank	54_36p	-1	provisional	missense	c.707	p.D236A	0	NULL	PatternScan_S100_CABP,superfamily_SSF47473,HMMPfam_S_100	-	no_errors
TMEM63C	57156	broad.mit.edu	36	14	76785535	76785535	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	14	76785535	76785535	C	G	SNP	TMEM63C	NM_020431	human	genbank	54_36p	1	validated	missense	c.2019	p.F673L	1	HMMPfam_DUF221	HMMPfam_DUF221	-	no_errors
TOP2A	7153	broad.mit.edu	36	17	35799793	35799793	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	17	35799793	35799793	C	A	SNP	TOP2A	NM_001067	human	genbank	54_36p	-1	reviewed	missense	c.4417	p.D1473Y	1	HMMPfam_DTHCT	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,HMMSmart_SM00433,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_DNA_gyraseB,superfamily_Type II DNA topoisomerase,PatternScan_TOPOISOMERASE_II,HMMSmart_SM00434,HMMPfam_DNA_topoisoIV,HMMPfam_DTHCT	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518901	7518901	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	17	7518901	7518901	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.672+1	e5+1	1	-	-	-	no_errors
TPP2	7174	broad.mit.edu	36	13	102128653	102128653	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	13	102128653	102128653	T	G	SNP	TPP2	NM_003291	human	genbank	54_36p	1	reviewed	missense	c.3736	p.Y1246D	1	NULL	PatternScan_SUBTILASE_ASP,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER	-	no_errors
UBR5	51366	broad.mit.edu	36	8	103423938	103423938	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	8	103423938	103423938	T	C	SNP	UBR5	NM_015902	human	genbank	54_36p	-1	reviewed	missense	c.1037	p.K346R	1	NULL	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_PABP,HMMSmart_PolyA,superfamily_PABP_HYD,HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1	-	no_errors
USP25	29761	broad.mit.edu	36	21	16121176	16121176	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	f2dfa869-39e1-4e54-8adf-c2b5428753bb	02e93152-8b3e-45a1-b1a7-ae8ab12d105d	21	16121176	16121176	A	G	SNP	USP25	NM_013396	human	genbank	54_36p	1	validated	silent	c.1476	p.E492	1	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_UBA-like,HMMPfam_UIM,HMMSmart_SM00726,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
