Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ABCB5	340273	broad.mit.edu	36	7	20651927	20651927	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	7	20651927	20651927	G	T	SNP	ABCB5	ENST00000404938	human	ensembl	54_36p	1	known	missense	c.702	p.K234N	1	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ADAM10	102	broad.mit.edu	36	15	56720384	56720384	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	15	56720384	56720384	T	A	SNP	ADAM10	NM_001110	human	genbank	54_36p	-1	reviewed	missense	c.896	p.K299M	1	superfamily_SSF55486,HMMPfam_Reprolysin	PatternScan_CYSTEINE_SWITCH,PatternScan_DISINTEGRIN_1,HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMPfam_Disintegrin,HMMSmart_DISIN,superfamily_Disintegrin	-	no_errors
ANKRD28	23243	broad.mit.edu	36	3	15724566	15724566	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	3	15724566	15724566	C	T	SNP	ANKRD28	NM_015199	human	genbank	54_36p	-1	provisional	silent	c.1326	p.L442	1	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank	-	no_errors
ANKRD57	65124	broad.mit.edu	36	2	109730442	109730442	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	2	109730442	109730442	G	A	SNP	ANKRD57	NM_023016	human	genbank	54_36p	1	validated	missense	c.1087	p.A363T	1	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
ARHGAP9	64333	broad.mit.edu	36	12	56159424	56159424	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	12	56159424	56159424	C	A	SNP	ARHGAP9	NM_032496	human	genbank	54_36p	-1	reviewed	missense	c.33	p.W11C	0.93	NULL	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_WW_Rsp5_WWP,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors
BCAN	63827	broad.mit.edu	36	1	154888064	154888064	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	1	154888064	154888064	C	G	SNP	BCAN	NM_021948	human	genbank	54_36p	1	validated	missense	c.1256	p.S419C	0.08	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,HMMPfam_Lectin_C,HMMSmart_SM00034,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_V-set,superfamily_Complement control module/SCR domain,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1,superfamily_Immunoglobulin,superfamily_EGF/Laminin	-	no_errors
BCORL1	63035	broad.mit.edu	36	X	128977107	128977122	+	Frame_Shift_Del	DEL	GCTCCTTCGTTCCAGA	-	GCTCCTTCGTTCCAGA	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	GCTCCTTCGTTCCAGA	GCTCCTTCGTTCCAGA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	X	128977107	128977122	GCTCCTTCGTTCCAGA	-	DEL	BCORL1	NM_021946	human	genbank	54_36p	1	validated	frame_shift_del	c.2678_2693	p.S894fs	0.998:0.988:0.975:0.970:0.823:0.808:0.745:0.595:0.582:0.604:0.614:0.692:0.710:0.740:0.989:0.998	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	(deletion:cds_exon[128974607,128977870])	no_errors
C11orf70	85016	broad.mit.edu	36	11	101442564	101442564	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	11	101442564	101442564	C	T	SNP	C11orf70	NM_032930	human	genbank	54_36p	1	predicted	missense	c.293	p.P98L	0.87	NULL	NULL	-	no_errors
C11orf82	220042	broad.mit.edu	36	11	82322093	82322093	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	11	82322093	82322093	A	T	SNP	C11orf82	NM_145018	human	genbank	54_36p	1	validated	missense	c.2065	p.I689F	0	NULL	superfamily_Nucleic acid-binding proteins	-	no_errors
CCDC147	159686	broad.mit.edu	36	10	106142137	106142137	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	10	106142137	106142137	G	T	SNP	CCDC147	NM_001008723	human	genbank	54_36p	1	validated	missense	c.1522	p.A508S	1	NULL	NULL	-	no_errors
CENPJ	55835	broad.mit.edu	36	13	24385017	24385017	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	13	24385017	24385017	G	A	SNP	CENPJ	NM_018451	human	genbank	54_36p	-1	reviewed	silent	c.147	p.D49	0	NULL	HMMPfam_Tcp10_C	-	no_errors
CLDN11	5010	broad.mit.edu	36	3	171633065	171633065	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	3	171633065	171633065	A	G	SNP	CLDN11	NM_005602	human	genbank	54_36p	1	reviewed	missense	c.451	p.I151V	1	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors
CTSC	1075	broad.mit.edu	36	11	87682116	87682116	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	11	87682116	87682116	G	T	SNP	CTSC	NM_001814	human	genbank	54_36p	-1	reviewed	nonsense	c.504	p.Y168*	0.08	superfamily_Cysteine proteinases	HMMPfam_CathepsinC_exc,superfamily_Dipeptidyl peptidase I (cathepsin C) exclusion domain,superfamily_Cysteine proteinases,HMMPfam_Peptidase_C1,HMMSmart_SM00645,PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN	-	no_errors
DCAF12L2	340578	broad.mit.edu	36	X	125127403	125127403	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	X	125127403	125127403	C	A	SNP	WDR40C	NM_001013628	human	genbank	54_36p	-1	provisional	silent	c.186	p.A62	0.15	NULL	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
DDX60L	91351	broad.mit.edu	36	4	169610856	169610882	+	In_Frame_Del	DEL	TAAGAAAGAATCACTGTTCCTAATCCA	-	TAAGAAAGAATCACTGTTCCTAATCCA	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	TAAGAAAGAATCACTGTTCCTAATCCA	TAAGAAAGAATCACTGTTCCTAATCCA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	4	169610856	169610882	TAAGAAAGAATCACTGTTCCTAATCCA	-	DEL	DDX60L	NM_001012967	human	genbank	54_36p	-1	validated	in_frame_del	c.990_964	p.WIRNSDSFL322in_frame_del	0.855:0.745:0.196:0.129:0.122:0.073:0.005:0.004:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.002:0.010:0.029:0.031:0.020	NULL	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C	(deletion:cds_exon[169610850,169611008])	no_errors
DNAH3	55567	broad.mit.edu	36	16	20938623	20938623	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	16	20938623	20938623	A	T	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.5846	p.L1949H	1	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DUSP27	92235	broad.mit.edu	36	1	165363449	165363449	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	1	165363449	165363449	C	A	SNP	DUSP27	NM_001080426	human	genbank	54_36p	1	provisional	silent	c.2457	p.T819	1	NULL	HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_DSPc,superfamily_SSF52799	-	no_errors
ERCC5	2073	broad.mit.edu	36	13	102325926	102325926	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	13	102325926	102325926	C	T	SNP	ERCC5	NM_000123	human	genbank	54_36p	1	reviewed	missense	c.3233	p.S1078F	0.05	NULL	HMMPfam_XPG_N,HMMSmart_SM00485,HMMPfam_XPG_I,HMMSmart_SM00484,PatternScan_XPG_2,HMMSmart_SM00279,PatternScan_XPG_1,superfamily_5' to 3' exonuclease C-terminal subdomain,superfamily_PIN domain-like	-	no_errors
FAM161A	84140	broad.mit.edu	36	2	61920995	61920995	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	2	61920995	61920995	A	C	SNP	FAM161A	NM_032180	human	genbank	54_36p	-1	validated	missense	c.321	p.D107E	0	NULL	HMMPfam_UPF0564	-	no_errors
FARSA	2193	broad.mit.edu	36	19	12896065	12896065	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	19	12896065	12896065	C	A	SNP	FARSA	NM_004461	human	genbank	54_36p	-1	validated	missense	c.1288	p.V430L	1	superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2d	superfamily_Winged helix DNA-binding domain,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2d	-	no_errors
FKBP8	23770	broad.mit.edu	36	19	18511469	18511469	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	19	18511469	18511469	G	C	SNP	FKBP8	NM_012181	human	genbank	54_36p	-1	reviewed	silent	c.354	p.V118	0.84	superfamily_SSF54534,HMMPfam_FKBP_C	superfamily_SSF54534,HMMPfam_FKBP_C,superfamily_SSF48452,HMMPfam_TPR_1	-	no_errors
GRK6	2870	broad.mit.edu	36	5	176790490	176790490	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	5	176790490	176790490	A	T	SNP	GRK6	NM_002082	human	genbank	54_36p	1	reviewed	missense	c.64	p.N22Y	1	NULL	superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X	-	no_errors
HAP1	9001	broad.mit.edu	36	17	37137979	37137979	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	17	37137979	37137979	C	G	SNP	HAP1	NM_177977	human	genbank	54_36p	-1	reviewed	missense	c.1200	p.M400I	0.81	HMMPfam_HAP1_N	HMMPfam_HAP1_N	-	no_errors
IL24	11009	broad.mit.edu	36	1	205142011	205142011	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	1	205142011	205142011	T	A	SNP	IL24	NM_006850	human	genbank	54_36p	1	reviewed	missense	c.508	p.F170I	0.48	superfamily_4_helix_cytokine	superfamily_4_helix_cytokine,PatternScan_INTERLEUKIN_10	-	no_errors
ITGAM	3684	broad.mit.edu	36	16	31240176	31240176	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	16	31240176	31240176	G	T	SNP	ITGAM	NM_000632	human	genbank	54_36p	1	reviewed	silent	c.1821	p.G607	0	superfamily_SSF69318,HMMSmart_Int_alpha	superfamily_SSF69318,HMMSmart_Int_alpha,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
KCTD19	146212	broad.mit.edu	36	16	65893250	65893250	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	16	65893250	65893250	T	G	SNP	KCTD19	NM_001100915	human	genbank	54_36p	-1	provisional	missense	c.720	p.E240D	0.97	superfamily_BTB/POZ_fold	superfamily_BTB/POZ_fold,HMMPfam_K_tetra	-	no_errors
KLF17	128209	broad.mit.edu	36	1	44367741	44367741	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	1	44367741	44367741	C	A	SNP	KLF17	NM_173484	human	genbank	54_36p	1	validated	missense	c.211	p.P71T	0	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
KRT12	3859	broad.mit.edu	36	17	36273065	36273065	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	17	36273065	36273065	C	G	SNP	KRT12	NM_000223	human	genbank	54_36p	-1	reviewed	silent	c.1152	p.L384	0.02	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
LATS1	9113	broad.mit.edu	36	6	150064723	150064723	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	6	150064723	150064723	A	-	DEL	LATS1	NM_004690	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.233	p.L78fs	1	NULL	superfamily_UBA-like,HMMPfam_UBA,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase_C	(deletion:cds_exon[150064608,150064955])	no_errors
LRRC16A	55604	broad.mit.edu	36	6	25625596	25625596	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	6	25625596	25625596	T	C	SNP	LRRC16A	NM_017640	human	genbank	54_36p	1	validated	silent	c.1848	p.F616	1	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
LRRC4C	57689	broad.mit.edu	36	11	40093534	40093534	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	11	40093534	40093534	C	T	SNP	LRRC4C	NM_020929	human	genbank	54_36p	-1	validated	silent	c.885	p.R295	1	superfamily_L domain-like	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	-	no_errors
LTB4R2	56413	broad.mit.edu	36	14	23849749	23849749	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	14	23849749	23849749	G	A	SNP	LTB4R2	NM_019839	human	genbank	54_36p	1	provisional	silent	c.132	p.L44	0.16	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
MAD1L1	8379	broad.mit.edu	36	7	2222320	2222320	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	7	2222320	2222320	C	A	SNP	MAD1L1	NM_001013836	human	genbank	54_36p	-1	reviewed	silent	c.807	p.L269	0.99	HMMPfam_MAD	HMMPfam_MAD	-	no_errors
MAPRE3	22924	broad.mit.edu	36	2	27102380	27102380	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	2	27102380	27102380	C	T	SNP	MAPRE3	NM_012326	human	genbank	54_36p	1	reviewed	silent	c.753	p.I251	0.99	HMMPfam_EB1	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMPfam_EB1	-	no_errors
MRPL39	54148	broad.mit.edu	36	21	25887033	25887033	+	Missense_Mutation	SNP	G	G	C	rs61735761	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	21	25887033	25887033	G	C	SNP	MRPL39	NM_080794	human	genbank	54_36p	-1	reviewed	missense	c.883	p.R295G	0.46	superfamily_ThrRS/AlaRS common domain	HMMPfam_TGS,superfamily_ThrRS/AlaRS common domain	-	no_errors
MT1B	4490	broad.mit.edu	36	16	55243995	55243995	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	16	55243995	55243995	G	T	SNP	MT1B	NM_005947	human	genbank	54_36p	1	provisional	missense	c.40	p.A14S	0.99	HMMPfam_Metallothio,superfamily_Metallothionein,PatternScan_METALLOTHIONEIN_VRT	HMMPfam_Metallothio,superfamily_Metallothionein,PatternScan_METALLOTHIONEIN_VRT	-	no_errors
MUC17	140453	broad.mit.edu	36	7	100472480	100472480	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	7	100472480	100472480	C	A	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	missense	c.11063	p.T3688K	0.02	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
MYH13	8735	broad.mit.edu	36	17	10168138	10168138	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	17	10168138	10168138	G	C	SNP	MYH13	NM_003802	human	genbank	54_36p	-1	validated	missense	c.2860	p.L954V	1	superfamily_Prefoldin	HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYOC	4653	broad.mit.edu	36	1	169872085	169872085	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	1	169872085	169872085	C	A	SNP	MYOC	NM_000261	human	genbank	54_36p	-1	reviewed	missense	c.1118	p.W373L	1	HMMPfam_OLF,HMMSmart_SM00284	HMMPfam_OLF,HMMSmart_SM00284	-	no_errors
NPC1L1	29881	broad.mit.edu	36	7	44545867	44545867	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	7	44545867	44545867	G	T	SNP	NPC1L1	NM_013389	human	genbank	54_36p	-1	validated	silent	c.654	p.I218	1	NULL	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
OR6C75	390323	broad.mit.edu	36	12	54045240	54045240	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	12	54045240	54045240	A	G	SNP	OR6C75	NM_001005497	human	genbank	54_36p	1	provisional	missense	c.79	p.I27V	0	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PAOX	196743	broad.mit.edu	36	10	135043934	135043934	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	10	135043934	135043934	T	C	SNP	PAOX	NM_152911	human	genbank	54_36p	1	validated	missense	c.623	p.F208S	0.97	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
PER1	5187	broad.mit.edu	36	17	7987845	7987845	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	17	7987845	7987845	G	A	SNP	PER1	NM_002616	human	genbank	54_36p	-1	reviewed	nonsense	c.2536	p.Q846*	0.7	NULL	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3	-	no_errors
PHF20	51230	broad.mit.edu	36	20	33990179	33990179	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	20	33990179	33990179	T	A	SNP	PHF20	NM_016436	human	genbank	54_36p	1	validated	missense	c.2447	p.V816E	1	NULL	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
PKHD1L1	93035	broad.mit.edu	36	8	110466974	110466974	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	8	110466974	110466974	A	T	SNP	PKHD1L1	NM_177531	human	genbank	54_36p	1	validated	missense	c.508	p.T170S	1	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00758,superfamily_Anthrax protective antigen,HMMSmart_SM00710,superfamily_Cupredoxins,HMMPfam_G8,superfamily_Pectin lyase-like	-	no_errors
PROKR2	128674	broad.mit.edu	36	20	5242722	5242722	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	20	5242722	5242722	G	A	SNP	PROKR2	NM_144773	human	genbank	54_36p	-1	reviewed	silent	c.294	p.S98	0.8	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PTPRD	5789	broad.mit.edu	36	9	8487241	8487241	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	9	8487241	8487241	C	A	SNP	PTPRD	NM_002839	human	genbank	54_36p	-1	reviewed	splice_site	c.2349+1	e15+1	1	-	-	-	no_errors
RUNDC3A	10900	broad.mit.edu	36	17	39746378	39746378	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	17	39746378	39746378	C	T	SNP	RUNDC3A	NM_006695	human	genbank	54_36p	1	validated	missense	c.439	p.R147C	1	HMMPfam_RUN,HMMSmart_RUN	HMMPfam_RUN,HMMSmart_RUN	-	no_errors
RYR2	6262	broad.mit.edu	36	1	235947210	235947210	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	1	235947210	235947210	G	C	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.10413	p.K3471N	0.82	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SAMD9L	219285	broad.mit.edu	36	7	92601563	92601564	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	7	92601563	92601564	-	C	INS	SAMD9L	NM_152703	human	genbank	54_36p	-1	validated	frame_shift_ins	c.1658_1657	p.V553fs	0.192:0.197	NULL	superfamily_SAM/Pointed domain	-	no_errors
SCN5A	6331	broad.mit.edu	36	3	38567056	38567056	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	3	38567056	38567056	G	A	SNP	SCN5A	NM_001099404	human	genbank	54_36p	-1	reviewed	silent	c.5811	p.S1937	0.4	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ	-	no_errors
SH3BP5	9467	broad.mit.edu	36	3	15273559	15273559	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	3	15273559	15273559	G	A	SNP	SH3BP5	NM_004844	human	genbank	54_36p	-1	validated	nonsense	c.955	p.Q319*	1	NULL	HMMPfam_SH3BP5	-	no_errors
SMAP2	64744	broad.mit.edu	36	1	40651355	40651355	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	1	40651355	40651355	G	A	SNP	SMAP2	NM_022733	human	genbank	54_36p	1	provisional	silent	c.483	p.V161	1	NULL	superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105	-	no_errors
SULT1A1	6817	broad.mit.edu	36	16	28527166	28527166	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	16	28527166	28527166	T	C	SNP	SULT1A1	NM_001055	human	genbank	54_36p	-1	reviewed	missense	c.319	p.T107A	0.93	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors
TANC1	85461	broad.mit.edu	36	2	159794846	159794846	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	2	159794846	159794846	C	T	SNP	TANC1	NM_033394	human	genbank	54_36p	1	validated	nonsense	c.4663	p.Q1555*	0	NULL	HMMPfam_TPR_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TM4SF4	7104	broad.mit.edu	36	3	150699338	150699338	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	3	150699338	150699338	G	T	SNP	TM4SF4	NM_004617	human	genbank	54_36p	1	reviewed	missense	c.541	p.G181C	1	HMMPfam_L6_membrane	HMMPfam_L6_membrane	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518993	7518993	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	17	7518993	7518993	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.581	p.L194R	1	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRA2B	6434	broad.mit.edu	36	3	187122592	187122592	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	3	187122592	187122592	T	C	SNP	TRA2B	NM_004593	human	genbank	54_36p	-1	validated	missense	c.539	p.N180S	1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
TTN	7273	broad.mit.edu	36	2	179133837	179133837	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	2	179133837	179133837	C	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.73211	p.R24404L	0.92	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	-	no_errors
UNC5B	219699	broad.mit.edu	36	10	72717487	72717487	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	10	72717487	72717487	G	A	SNP	UNC5B	NM_170744	human	genbank	54_36p	1	validated	missense	c.860	p.G287D	1	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	HMMPfam_Death,HMMSmart_SM00005,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_ZU5,HMMSmart_SM00218,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_DEATH domain,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
USP31	57478	broad.mit.edu	36	16	22988358	22988358	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	16	22988358	22988358	C	T	SNP	USP31	NM_020718	human	genbank	54_36p	-1	validated	missense	c.2569	p.A857T	1	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
WNK1	65125	broad.mit.edu	36	12	875810	875810	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	12	875810	875810	A	G	SNP	WNK1	NM_018979	human	genbank	54_36p	1	validated	missense	c.5896	p.K1966E	1	NULL	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase	-	no_errors
WNK3	65267	broad.mit.edu	36	X	54337938	54337938	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	X	54337938	54337938	G	A	SNP	WNK3	NM_020922	human	genbank	54_36p	-1	validated	missense	c.1466	p.T489M	0.09	superfamily_Kinase_like	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase	-	no_errors
XKRX	402415	broad.mit.edu	36	X	100056313	100056313	+	Silent	SNP	G	G	T	rs61740851	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	X	100056313	100056313	G	T	SNP	XKRX	NM_212559	human	genbank	54_36p	-1	provisional	silent	c.1059	p.V353	0.98	NULL	NULL	-	no_errors
YOD1	55432	broad.mit.edu	36	1	205289203	205289203	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	1	205289203	205289203	G	T	SNP	YOD1	NM_018566	human	genbank	54_36p	-1	validated	missense	c.832	p.P278T	1	NULL	superfamily_Ubiquitin-like,superfamily_Cysteine proteinases,HMMPfam_OTU,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
YOD1	55432	broad.mit.edu	36	1	205290841	205290841	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	1	205290841	205290841	G	C	SNP	YOD1	NM_018566	human	genbank	54_36p	-1	validated	missense	c.158	p.A53G	1	superfamily_Ubiquitin-like	HMMPfam_OTU,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Cysteine proteinases,superfamily_Ubiquitin-like	-	no_errors
YWHAE	7531	broad.mit.edu	36	17	1215037	1215037	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	17	1215037	1215037	G	A	SNP	YWHAE	NM_006761	human	genbank	54_36p	-1	reviewed	missense	c.130	p.L44F	1	superfamily_14-3-3 protein,HMMPfam_14-3-3,HMMSmart_SM00101,PatternScan_1433_1	superfamily_14-3-3 protein,HMMPfam_14-3-3,HMMSmart_SM00101,PatternScan_1433_1,PatternScan_1433_2	-	no_errors
ZBTB10	65986	broad.mit.edu	36	8	81593361	81593361	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	8	81593361	81593361	G	A	SNP	ZBTB10	NM_001105539	human	genbank	54_36p	1	validated	nonsense	c.2129	p.W710*	1	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF79	7633	broad.mit.edu	36	9	129238088	129238088	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a3e426c7-beaf-40c6-88a0-092582340145	f211fd01-3141-43e2-aa48-88345b08a70f	9	129238088	129238088	C	T	SNP	ZNF79	NM_007135	human	genbank	54_36p	1	validated	nonsense	c.313	p.R105*	0	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
