Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ABCC10	89845	broad.mit.edu	36	6	43514388	43514388	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	6	43514388	43514388	G	A	SNP	ABCC10	NM_033450	human	genbank	54_36p	1	reviewed	silent	c.1920	p.L640	1	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
ABCC5	10057	broad.mit.edu	36	3	185121873	185121873	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	3	185121873	185121873	A	T	SNP	ABCC5	NM_005688	human	genbank	54_36p	-1	reviewed	missense	c.4223	p.F1408Y	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ADCY2	108	broad.mit.edu	36	5	7879918	7879918	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	5	7879918	7879918	C	T	SNP	ADCY2	NM_020546	human	genbank	54_36p	1	reviewed	silent	c.3210	p.D1070	1	HMMPfam_Guanylate_cyc,superfamily_A/G_cyclase	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
ALDH1L1	10840	broad.mit.edu	36	3	127355060	127355060	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	3	127355060	127355060	C	G	SNP	ALDH1L1	NM_012190	human	genbank	54_36p	-1	reviewed	missense	c.775	p.D259H	0.96	HMMPfam_Formyl_trans_C,superfamily_FMT_C_like	PatternScan_GART,HMMPfam_Formyl_trans_N,superfamily_formyl_transf,HMMPfam_Formyl_trans_C,PatternScan_PHOSPHOPANTETHEINE,superfamily_ACP_like,superfamily_FMT_C_like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_Aldehyde_DH/Histidinol_DH	-	no_errors
BAI1	575	broad.mit.edu	36	8	143566730	143566730	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	8	143566730	143566730	T	C	SNP	BAI1	NM_001702	human	genbank	54_36p	1	reviewed	missense	c.2312	p.L771P	1	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
C18orf34	374864	broad.mit.edu	36	18	29182907	29182907	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	18	29182907	29182907	T	G	SNP	C18orf34	NM_001105528	human	genbank	54_36p	-1	validated	missense	c.402	p.K134N	0	NULL	NULL	-	no_errors
C18orf45	85019	broad.mit.edu	36	18	19132002	19132002	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	18	19132002	19132002	G	T	SNP	C18orf45	NM_032933	human	genbank	54_36p	-1	validated	silent	c.858	p.A286	1	superfamily_Multidrug resistance efflux transporter EmrE	superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors
C2orf66	401027	broad.mit.edu	36	2	197380523	197380523	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	2	197380523	197380523	G	A	SNP	C2orf66	NM_213608	human	genbank	54_36p	-1	predicted	silent	c.243	p.F81	0.96	NULL	NULL	-	no_errors
C4orf21	55345	broad.mit.edu	36	4	113758564	113758564	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	4	113758564	113758564	G	C	SNP	C4orf21	NM_018392	human	genbank	54_36p	-1	predicted	missense	c.2083	p.Q695E	0	NULL	HMMPfam_DUF2439	-	no_errors
CA4	762	broad.mit.edu	36	17	55591421	55591421	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	17	55591421	55591421	A	G	SNP	CA4	NM_000717	human	genbank	54_36p	1	reviewed	missense	c.793	p.S265G	0.01	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1	-	no_errors
CCDC158	339965	broad.mit.edu	36	4	77497599	77497599	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	4	77497599	77497599	C	G	SNP	FLJ25770	NM_001042784	human	genbank	54_36p	-1	validated	missense	c.2125	p.E709Q	0.96	NULL	NULL	-	no_errors
CGRRF1	10668	broad.mit.edu	36	14	54074630	54074630	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	14	54074630	54074630	T	C	SNP	CGRRF1	NM_006568	human	genbank	54_36p	1	validated	missense	c.778	p.S260P	0.03	superfamily_SSF57850	HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
CLPB	81570	broad.mit.edu	36	11	71823138	71823138	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	11	71823138	71823138	T	C	SNP	CLPB	NM_030813	human	genbank	54_36p	-1	provisional	missense	c.29	p.K10R	0.91	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_2,HMMPfam_ClpB_D2-small	-	no_errors
CTBS	1486	broad.mit.edu	36	1	84808932	84808932	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	1	84808932	84808932	T	C	SNP	CTBS	NM_004388	human	genbank	54_36p	-1	validated	silent	c.237	p.T79	1	superfamily_(Trans)glycosidases,HMMSmart_SM00636	superfamily_(Trans)glycosidases,HMMSmart_SM00636,HMMPfam_Glyco_hydro_18,PatternScan_CHITINASE_18	-	no_errors
CTNNA1	1495	broad.mit.edu	36	5	138145513	138145513	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	5	138145513	138145513	A	C	SNP	CTNNA1	NM_001903	human	genbank	54_36p	1	validated	missense	c.1	p.M1L	1	NULL	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin,PatternScan_VINCULIN_1	-	no_errors
CTNND2	1501	broad.mit.edu	36	5	11289923	11289923	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	5	11289923	11289923	C	G	SNP	CTNND2	NM_001332	human	genbank	54_36p	-1	validated	missense	c.1641	p.W547C	1	superfamily_ARM repeat,HMMPfam_Arm	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors
DGKI	9162	broad.mit.edu	36	7	136922464	136922464	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	7	136922464	136922464	C	A	SNP	DGKI	NM_004717	human	genbank	54_36p	-1	reviewed	silent	c.1344	p.L448	1	HMMPfam_DAGK_cat,HMMSmart_DAGKc	PatternScan_ZF_DAG_PE_1,HMMSmart_C1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_DAGKc,HMMPfam_DAGK_acc,HMMSmart_DAGKa,superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-	no_errors
ELN	2006	broad.mit.edu	36	7	73093497	73093497	+	Missense_Mutation	SNP	C	C	A	rs41350445	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	7	73093497	73093497	C	A	SNP	ELN	NM_000501	human	genbank	54_36p	1	reviewed	missense	c.212	p.A71E	0	NULL	PatternScan_ENDONUCLEASE_III_2,PatternScan_HEXAPEP_TRANSFERASES	-	no_errors
EPDR1	54749	broad.mit.edu	36	7	37926943	37926943	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	7	37926943	37926943	A	C	SNP	EPDR1	NM_017549	human	genbank	54_36p	1	reviewed	silent	c.237	p.A79	0	NULL	HMMPfam_Ependymin,PatternScan_EPENDYMIN_1,PatternScan_EPENDYMIN_2	-	no_errors
ETV4	2118	broad.mit.edu	36	17	38962065	38962065	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	17	38962065	38962065	C	G	SNP	ETV4	NM_001079675	human	genbank	54_36p	-1	validated	silent	c.1194	p.S398	0.76	superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_2	HMMPfam_ETS_PEA3_N,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2	-	no_errors
FBN2	2201	broad.mit.edu	36	5	127738326	127738326	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	5	127738326	127738326	C	T	SNP	FBN2	NM_001999	human	genbank	54_36p	-1	reviewed	silent	c.1989	p.Q663	1	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FGFR3	2261	broad.mit.edu	36	4	1777374	1777374	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	4	1777374	1777374	G	T	SNP	FGFR3	NM_000142	human	genbank	54_36p	1	reviewed	missense	c.1745	p.C582F	1	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
GSPT1	2935	broad.mit.edu	36	16	11888276	11888276	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	16	11888276	11888276	C	T	SNP	GSPT1	NM_002094	human	genbank	54_36p	-1	validated	missense	c.557	p.R186K	1	superfamily_SSF52540,HMMPfam_GTP_EFTU	superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C	-	no_errors
HIST1H2BJ	8970	broad.mit.edu	36	6	27208431	27208431	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	6	27208431	27208431	G	A	SNP	HIST1H2BJ	NM_021058	human	genbank	54_36p	-1	reviewed	silent	c.78	p.D26	1	superfamily_Histone-fold	superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B	-	no_errors
LILRA5	353514	broad.mit.edu	36	19	59514739	59514739	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	19	59514739	59514739	T	C	SNP	LILRA5	NM_021250	human	genbank	54_36p	-1	reviewed	missense	c.469	p.N157D	0.05	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
MAP4K3	8491	broad.mit.edu	36	2	39517539	39517539	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	2	39517539	39517539	T	C	SNP	MAP4K3	NM_003618	human	genbank	54_36p	-1	reviewed	missense	c.94	p.K32E	1	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MED11	400569	broad.mit.edu	36	17	4581930	4581930	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	17	4581930	4581930	C	A	SNP	MED11	NM_001001683	human	genbank	54_36p	1	provisional	missense	c.196	p.Q66K	1	HMMPfam_Med11	HMMPfam_Med11	-	no_errors
MYH7B	57644	broad.mit.edu	36	20	33050327	33050327	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	20	33050327	33050327	A	C	SNP	MYH7B	NM_020884	human	genbank	54_36p	1	validated	missense	c.4264	p.S1422R	1	HMMPfam_Myosin_tail_1	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-binding arm,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYO16	23026	broad.mit.edu	36	13	108270690	108270691	+	Missense_Mutation	DNP	AT	AT	TA	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	AT	AT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	13	108270690	108270691	AT	TA	DNP	MYO16	NM_015011	human	genbank	54_36p	1	validated	missense	c.806_807	p.N269I	0.740:0.891	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ	-	no_errors
NDN	4692	broad.mit.edu	36	15	21483337	21483337	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	15	21483337	21483337	G	A	SNP	NDN	NM_002487	human	genbank	54_36p	-1	reviewed	missense	c.121	p.P41S	0.02	NULL	HMMPfam_MAGE	-	no_errors
NLRP12	91662	broad.mit.edu	36	19	59004776	59004776	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	19	59004776	59004776	G	C	SNP	NLRP12	NM_144687	human	genbank	54_36p	-1	reviewed	missense	c.1949	p.S650C	0.01	superfamily_RNI-like	HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like	-	no_errors
NPC1L1	29881	broad.mit.edu	36	7	44519640	44519640	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	7	44519640	44519640	G	C	SNP	NPC1L1	NM_013389	human	genbank	54_36p	-1	validated	missense	c.4011	p.S1337R	0.2	NULL	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
NPHP3	27031	broad.mit.edu	36	3	133903036	133903036	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	3	133903036	133903036	G	C	SNP	NPHP3	NM_153240	human	genbank	54_36p	-1	reviewed	missense	c.1556	p.A519G	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1	-	no_errors
PRC1	9055	broad.mit.edu	36	15	89325231	89325231	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	15	89325231	89325231	C	G	SNP	PRC1	NM_003981	human	genbank	54_36p	-1	reviewed	missense	c.709	p.E237Q	1	HMMPfam_MAP65_ASE1	HMMPfam_MAP65_ASE1	-	no_errors
PROKR2	128674	broad.mit.edu	36	20	5230783	5230783	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	20	5230783	5230783	C	T	SNP	PROKR2	NM_144773	human	genbank	54_36p	-1	reviewed	missense	c.1058	p.R353H	0.98	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PUS1	80324	broad.mit.edu	36	12	130980501	130980501	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	12	130980501	130980501	C	T	SNP	PUS1	NM_025215	human	genbank	54_36p	1	validated	silent	c.171	p.R57	0.03	NULL	superfamily_Pseudouridine synthase,HMMPfam_PseudoU_synth_1	-	no_errors
RSPH6A	81492	broad.mit.edu	36	19	51009836	51009837	+	Missense_Mutation	DNP	CC	CC	AA	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	19	51009836	51009837	CC	AA	DNP	RSHL1	NM_030785	human	genbank	54_36p	-1	reviewed	missense	c.439_438	p.LG146FC	0.001:0.000	NULL	HMMPfam_Radial_spoke	-	no_errors
SCN3A	6328	broad.mit.edu	36	2	165711590	165711590	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	2	165711590	165711590	A	G	SNP	SCN3A	NM_006922	human	genbank	54_36p	-1	reviewed	missense	c.1576	p.S526P	1	NULL	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_SSF81324	-	no_errors
SHKBP1	92799	broad.mit.edu	36	19	45786835	45786835	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	19	45786835	45786835	C	T	SNP	SHKBP1	NM_138392	human	genbank	54_36p	1	validated	silent	c.1500	p.Y500	1	NULL	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1	-	no_errors
SLC4A11	83959	broad.mit.edu	36	20	3158863	3158863	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	20	3158863	3158863	C	G	SNP	SLC4A11	NM_032034	human	genbank	54_36p	-1	validated	missense	c.1507	p.V503L	1	HMMPfam_HCO3_cotransp	superfamily_Phoshotransferase/anion transport protein,HMMPfam_HCO3_cotransp	-	no_errors
SNED1	25992	broad.mit.edu	36	2	241670404	241670404	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	2	241670404	241670404	C	T	SNP	SNED1	NM_001080437	human	genbank	54_36p	1	provisional	missense	c.4073	p.S1358F	0.99	superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMSmart_SM00179,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_Complement control module/SCR domain,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
SPTBN2	6712	broad.mit.edu	36	11	66223550	66223550	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	11	66223550	66223550	G	A	SNP	SPTBN2	NM_006946	human	genbank	54_36p	-1	validated	missense	c.3679	p.R1227W	1	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
SYNM	23336	broad.mit.edu	36	15	97490428	97490428	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	15	97490428	97490428	C	G	SNP	SYNM	ENST00000336292	human	ensembl	54_36p	1	known	missense	c.4337	p.T1446R	0	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
TMC8	147138	broad.mit.edu	36	17	73646067	73646067	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	17	73646067	73646067	C	T	SNP	TMC8	NM_152468	human	genbank	54_36p	1	reviewed	missense	c.1576	p.R526C	1	HMMPfam_TMC	HMMPfam_TMC	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518293	7518293	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	17	7518293	7518293	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.713	p.C238F	1	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRPM2	7226	broad.mit.edu	36	21	44635613	44635613	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	21	44635613	44635613	G	T	SNP	TRPM2	NM_003307	human	genbank	54_36p	1	reviewed	missense	c.1471	p.A491S	1	NULL	PatternScan_CHITINASE_18,HMMPfam_Ion_trans,superfamily_Nudix	-	no_errors
TRPS1	7227	broad.mit.edu	36	8	116701055	116701055	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	8	116701055	116701055	G	A	SNP	TRPS1	NM_014112	human	genbank	54_36p	-1	reviewed	missense	c.445	p.P149S	1	NULL	HMMPfam_GATA,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57716	-	no_errors
TRPV3	162514	broad.mit.edu	36	17	3404841	3404841	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	17	3404841	3404841	G	C	SNP	TRPV3	NM_145068	human	genbank	54_36p	-1	reviewed	silent	c.54	p.A18	0	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans	-	no_errors
TTL	150465	broad.mit.edu	36	2	112968226	112968226	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	2	112968226	112968226	G	T	SNP	TTL	NM_153712	human	genbank	54_36p	1	validated	missense	c.272	p.C91F	1	HMMPfam_TTL	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
USP51	158880	broad.mit.edu	36	X	55531044	55531044	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	X	55531044	55531044	T	C	SNP	USP51	NM_201286	human	genbank	54_36p	-1	validated	missense	c.1054	p.R352G	1	NULL	HMMPfam_zf-UBP,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
UTP14A	10813	broad.mit.edu	36	X	128891264	128891264	+	Nonstop_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	X	128891264	128891264	G	C	SNP	UTP14A	NM_006649	human	genbank	54_36p	1	provisional	nonstop	c.2315	p.*772S	0.02	NULL	HMMPfam_Utp14	-	no_errors
VPS13C	54832	broad.mit.edu	36	15	59988545	59988545	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	15	59988545	59988545	C	T	SNP	VPS13C	NM_020821	human	genbank	54_36p	-1	validated	silent	c.8916	p.E2972	1	HMMPfam_DUF1162	HMMPfam_DUF1162	-	no_errors
ZNF821	55565	broad.mit.edu	36	16	70451902	70451902	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	16	70451902	70451902	G	T	SNP	ZNF821	NM_017530	human	genbank	54_36p	-1	provisional	silent	c.633	p.P211	0.84	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2	-	no_errors
ZNF91	7644	broad.mit.edu	36	19	23336986	23336986	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	a2f4e75d-b9ce-4d18-bd89-e8e19099c770	f10444ec-4962-4bf5-ae15-5a6641b9ec64	19	23336986	23336986	C	T	SNP	ZNF91	NM_003430	human	genbank	54_36p	-1	validated	missense	c.635	p.C212Y	0.61	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355	-	no_errors
