Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
LOC729034	729034	genome.wustl.edu	36	17	177350	177350	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	17	177350	177350	G	C	SNP	LOC729034	XM_001129120	human	genbank	54_36p	+1	model	missense	c.1318	p.A440P	0.321	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
COLEC12	81035	genome.wustl.edu	36	18	325101	325101	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	18	325101	325101	G	T	SNP	COLEC12	NM_130386	human	genbank	54_36p	-1	validated	missense	c.1457	p.P486Q	0.935	NULL	HMMPfam_Collagen,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
GEMIN4	50628	genome.wustl.edu	36	17	597060	597060	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	17	597060	597060	G	A	SNP	GEMIN4	NM_015721	human	genbank	54_36p	-1	reviewed	missense	c.973	p.R325W	0.107	NULL	NULL	-	no_errors
NARFL	64428	genome.wustl.edu	36	16	720488	720488	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	16	720488	720488	G	A	SNP	NARFL	NM_022493	human	genbank	54_36p	-1	provisional	missense	c.1361	p.A454V	0.987	superfamily_Fe-only hydrogenase	superfamily_Fe-only hydrogenase,HMMPfam_Fe_hyd_lg_C	-	no_errors
TPO	7173	genome.wustl.edu	36	2	1486735	1486735	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	2	1486735	1486735	G	A	SNP	TPO	NM_000547	human	genbank	54_36p	+1	reviewed	missense	c.2395	p.E799K	1.000	superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,PatternScan_PEROXIDASE_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
RGS12	6002	genome.wustl.edu	36	4	3386352	3386352	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	4	3386352	3386352	G	T	SNP	RGS12	NM_198229	human	genbank	54_36p	+1	reviewed	missense	c.2266	p.A756S	1.000	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,superfamily_Ubiquitin-like,HMMPfam_RBD,HMMSmart_SM00455,HMMPfam_GoLoco,HMMSmart_SM00390	-	no_errors
ANKRD16	54522	genome.wustl.edu	36	10	5962324	5962324	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	10	5962324	5962324	G	C	SNP	ANKRD16	NM_001009941	human	genbank	54_36p	-1	validated	missense	c.871	p.Q291E	0.952	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
CHD5	26038	genome.wustl.edu	36	1	6092623	6092623	+	Silent	SNP	C	T	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	1	6092623	6092623	C	T	SNP	CHD5	NM_015557	human	genbank	54_36p	-1	provisional	silent	c.5397	p.A1799	0.613	HMMPfam_CHDCT2	PatternScan_CHROMO_1,HMMPfam_CHDNT,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,HMMSmart_RING,superfamily_Chromodomain-like,HMMSmart_CHROMO,superfamily_SSF52540,HMMPfam_Chromo,HMMSmart_DEXDc,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors
PDE4A	5141	genome.wustl.edu	36	19	10432778	10432778	+	Silent	SNP	C	C	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	19	10432778	10432778	C	A	SNP	PDE4A	NM_006202	human	genbank	54_36p	+1	validated	silent	c.747	p.T249	0.976	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
KCNF1	3754	genome.wustl.edu	36	2	10970880	10970880	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	2	10970880	10970880	C	T	SNP	KCNF1	NM_002236	human	genbank	54_36p	+1	reviewed	missense	c.877	p.R293W	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_POZ domain,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
ZC3H7A	29066	genome.wustl.edu	36	16	11769802	11769802	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	16	11769802	11769802	C	G	SNP	ZC3H7A	NM_014153	human	genbank	54_36p	-1	provisional	missense	c.1230	p.Q410H	0.998	NULL	superfamily_TPR-like,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
BCL2L14	79370	genome.wustl.edu	36	12	12134986	12134986	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	12	12134986	12134986	A	T	SNP	BCL2L14	NM_138722	human	genbank	54_36p	+1	reviewed	missense	c.614	p.E205V	0.993	superfamily_Bcl-2 inhibitors of programmed cell death	superfamily_Bcl-2 inhibitors of programmed cell death,HMMPfam_Bcl-2	-	no_errors
CDRT1	374286	genome.wustl.edu	36	17	15451633	15451633	+	Silent	SNP	A	G	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	17	15451633	15451633	A	G	SNP	CDRT1	NM_006382	human	genbank	54_36p	-1	provisional	silent	c.1212	p.N404	0.754	superfamily_WD40 repeat-like	superfamily_F-box domain,HMMPfam_F-box,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
TRIM16	10626	genome.wustl.edu	36	17	15480181	15480181	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	17	15480181	15480181	G	C	SNP	TRIM16	NM_006470	human	genbank	54_36p	-1	reviewed	missense	c.743	p.A248G	1.000	NULL	HMMSmart_SM00336,HMMPfam_zf-B_box,superfamily_B-box zinc-binding domain,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
ATPAF2	91647	genome.wustl.edu	36	17	17882970	17882970	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	17	17882970	17882970	C	T	SNP	ATPAF2	NM_145691	human	genbank	54_36p	-1	reviewed	missense	c.83	p.S28N	0.000	NULL	HMMPfam_ATP12	-	no_errors
BTG3	10950	genome.wustl.edu	36	21	17888452	17888452	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	21	17888452	17888452	G	A	SNP	BTG3	NM_006806	human	genbank	54_36p	-1	reviewed	nonsense	c.589	p.R197*	0.999	NULL	HMMSmart_SM00099,HMMPfam_BTG,PatternScan_BTG_1,PatternScan_BTG_2	-	no_errors
TPTE2	93492	genome.wustl.edu	36	13	18902655	18902655	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	13	18902655	18902655	T	A	SNP	TPTE2	NM_199254	human	genbank	54_36p	-1	validated	missense	c.1255	p.M419L	0.016	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2	superfamily_Voltage-gated potassium channels,superfamily_(Phosphotyrosine protein) phosphatases II,PatternScan_TYR_PHOSPHATASE_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2	-	no_errors
SYT17	51760	genome.wustl.edu	36	16	19102350	19102350	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	16	19102350	19102350	G	T	SNP	SYT17	NM_016524	human	genbank	54_36p	+1	validated	splice_site	c.332-1	e5-1	1.000	-	-	-	no_errors
LOC100131046	0	genome.wustl.edu	36	16	20075871	20075871	+	RNA	SNP	C	A	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	16	20075871	20075871	C	A	SNP	LOC100131046	XR_037711	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.956	-	-	-	pseudogene
GDF7	151449	genome.wustl.edu	36	2	20734562	20734562	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	2	20734562	20734562	C	A	SNP	GDF7	NM_182828	human	genbank	54_36p	+1	reviewed	missense	c.1249	p.P417T	1.000	superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204	HMMPfam_TGFb_propeptide,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1	-	no_errors
ZNF208	7757	genome.wustl.edu	36	19	21949366	21949366	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	19	21949366	21949366	C	G	SNP	ZNF208	NM_007153	human	genbank	54_36p	-1	provisional	missense	c.310	p.E104Q	0.007	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TNFRSF10A	8797	genome.wustl.edu	36	8	23115325	23115325	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	8	23115325	23115325	G	C	SNP	TNFRSF10A	NM_003844	human	genbank	54_36p	-1	reviewed	missense	c.570	p.C190W	0.597	superfamily_TNF receptor-like,PatternScan_TNFR_NGFR_1,HMMPfam_TNFR_c6,HMMSmart_SM00208	superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,HMMSmart_SM00005,superfamily_DEATH domain,HMMPfam_Death	-	no_errors
MYO18B	84700	genome.wustl.edu	36	22	24621146	24621146	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	22	24621146	24621146	G	A	SNP	MYO18B	NM_032608	human	genbank	54_36p	+1	reviewed	missense	c.4567	p.D1523N	0.969	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25359036	25359036	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	2	25359036	25359036	G	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.226	p.P76S	0.957	NULL	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_FYVE/PHD zinc finger,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_1	-	no_errors
MAN1C1	57134	genome.wustl.edu	36	1	25952561	25952561	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	1	25952561	25952561	G	T	SNP	MAN1C1	NM_020379	human	genbank	54_36p	+1	validated	splice_site	c.835-1	e5-1	1.000	-	-	-	no_errors
PLB1	151056	genome.wustl.edu	36	2	28675079	28675079	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	2	28675079	28675079	G	C	SNP	PLB1	NM_153021	human	genbank	54_36p	+1	validated	missense	c.2422	p.A808P	0.002	superfamily_SGNH hydrolase,HMMPfam_Lipase_GDSL	superfamily_SGNH hydrolase,PatternScan_LIPASE_GDSL_SER,HMMPfam_Lipase_GDSL	-	no_errors
PLAGL2	5326	genome.wustl.edu	36	20	30248047	30248047	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	20	30248047	30248047	G	A	SNP	PLAGL2	NM_002657	human	genbank	54_36p	-1	reviewed	nonsense	c.1360	p.Q454*	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
SETD1A	9739	genome.wustl.edu	36	16	30890359	30890359	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	16	30890359	30890359	A	G	SNP	SETD1A	NM_014712	human	genbank	54_36p	+1	provisional	missense	c.3176	p.E1059G	0.925	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SSF82199,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET	-	no_errors
PUM1	9698	genome.wustl.edu	36	1	31304699	31304699	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	1	31304699	31304699	C	T	SNP	PUM1	NM_001020658	human	genbank	54_36p	-1	reviewed	missense	c.302	p.G101D	1.000	NULL	superfamily_ARM repeat,HMMPfam_PUF,HMMSmart_SM00025	-	no_errors
NRP1	8829	genome.wustl.edu	36	10	33531645	33531645	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	10	33531645	33531645	A	G	SNP	NRP1	ENST00000374818	human	ensembl	54_36p	-1	known	missense	c.2044	p.F682L	0.001	NULL	superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,superfamily_Gal_bind_like,HMMSmart_FA58C,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2	-	no_errors
ERBB2	2064	genome.wustl.edu	36	17	35121734	35121734	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	17	35121734	35121734	C	T	SNP	ERBB2	NM_004448	human	genbank	54_36p	+1	reviewed	missense	c.929	p.S310F	0.999	superfamily_Growth factor receptor domain,HMMPfam_Furin-like	superfamily_L domain-like,HMMPfam_Recep_L_domain,superfamily_Growth factor receptor domain,HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_EF_HAND_1,HMMPfam_YLP	-	no_errors
EZH1	2145	genome.wustl.edu	36	17	38111666	38111666	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	17	38111666	38111666	T	G	SNP	EZH1	NM_001991	human	genbank	54_36p	-1	validated	missense	c.1724	p.Y575S	1.000	superfamily_SET domain	HMMSmart_SM00717,PatternScan_AP_NUCLEASE_F2_1,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317	-	no_errors
ENSG00000221435	0	genome.wustl.edu	36	19	40565041	40565041	+	RNA	SNP	A	T	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	19	40565041	40565041	A	T	SNP	ENSG00000221435	ENST00000408508	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
TREML3	340206	genome.wustl.edu	36	6	41293601	41293601	+	Silent	SNP	G	G	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	6	41293601	41293601	G	T	SNP	TREML3	ENST00000332842	human	ensembl	54_36p	-1	known	silent	c.63	p.S21	0.000	superfamily_Immunoglobulin	superfamily_Immunoglobulin	-	no_start_codon
IKBKB	3551	genome.wustl.edu	36	8	42291059	42291059	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	8	42291059	42291059	C	T	SNP	IKBKB	NM_001556	human	genbank	54_36p	+1	validated	missense	c.755	p.T252M	0.945	superfamily_Kinase_like	PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_ubiquitin	-	no_errors
SIK1	150094	genome.wustl.edu	36	21	43661210	43661210	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	21	43661210	43661210	T	A	SNP	SIK1	NM_173354	human	genbank	54_36p	-1	validated	missense	c.2192	p.H731L	1.000	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_UBA	-	no_errors
JMJD2A	9682	genome.wustl.edu	36	1	43907477	43907477	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	1	43907477	43907477	C	T	SNP	JMJD2A	NM_014663	human	genbank	54_36p	+1	reviewed	missense	c.1283	p.T428M	0.990	NULL	HMMSmart_SM00545,HMMPfam_JmjN,HMMSmart_SM00558,HMMPfam_JmjC,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT	-	no_errors
POMGNT1	55624	genome.wustl.edu	36	1	46432628	46432628	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	1	46432628	46432628	T	G	SNP	POMGNT1	NM_017739	human	genbank	54_36p	-1	reviewed	missense	c.784	p.N262H	1.000	NULL	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_GNT-I	-	no_errors
CACNA1F	778	genome.wustl.edu	36	X	48953042	48953042	+	Silent	SNP	G	A	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	X	48953042	48953042	G	A	SNP	CACNA1F	NM_005183	human	genbank	54_36p	-1	reviewed	silent	c.4845	p.S1615	0.996	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
ALDH16A1	126133	genome.wustl.edu	36	19	54663984	54663984	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	19	54663984	54663984	C	T	SNP	ALDH16A1	NM_153329	human	genbank	54_36p	+1	validated	missense	c.2176	p.R726W	0.985	superfamily_ALDH-like,HMMPfam_Aldedh	superfamily_ALDH-like,HMMPfam_Aldedh	-	no_errors
OBFC2B	79035	genome.wustl.edu	36	12	54906418	54906418	+	Silent	SNP	C	C	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	12	54906418	54906418	C	T	SNP	OBFC2B	NM_024068	human	genbank	54_36p	+1	validated	silent	c.384	p.D128	1.000	NULL	superfamily_Nucleic acid-binding proteins,HMMPfam_tRNA_anti	-	no_errors
RAX	30062	genome.wustl.edu	36	18	55090632	55090632	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	18	55090632	55090632	C	G	SNP	RAX	NM_013435	human	genbank	54_36p	-1	validated	missense	c.484	p.D162H	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR	-	no_errors
LOC341689	341689	genome.wustl.edu	36	13	58001057	58001057	+	RNA	SNP	A	A	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	13	58001057	58001057	A	G	SNP	LOC341689	XR_017487	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.515	-	-	-	no_errors
LOC653753	0	genome.wustl.edu	36	19	58511065	58511065	+	RNA	SNP	G	G	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	19	58511065	58511065	G	A	SNP	LOC653753	XR_039415	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
OR4D6	219983	genome.wustl.edu	36	11	58981331	58981331	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	11	58981331	58981331	G	T	SNP	OR4D6	NM_001004708	human	genbank	54_36p	+1	provisional	missense	c.322	p.G108C	0.001	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ZP1	22917	genome.wustl.edu	36	11	60393659	60393659	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	11	60393659	60393659	C	T	SNP	ZP1	NM_207341	human	genbank	54_36p	+1	validated	missense	c.392	p.A131V	0.000	NULL	superfamily_P_trefoil,PatternScan_P_TREFOIL,HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_ZP_1	-	no_errors
ANK3	288	genome.wustl.edu	36	10	61637947	61637947	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	10	61637947	61637947	G	A	SNP	ANK3	NM_020987	human	genbank	54_36p	-1	reviewed	silent	c.1047	p.C349	0.994	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_ZU5,HMMSmart_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
SAPS3	55291	genome.wustl.edu	36	11	68127582	68127582	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	11	68127582	68127582	G	T	SNP	SAPS3	ENST00000393801	human	ensembl	54_36p	+1	known	missense	c.2462	p.G821V	0.377	NULL	HMMPfam_SAPS	-	no_errors
PMCHL2	5370	genome.wustl.edu	36	5	70707458	70707458	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	5	70707458	70707458	A	C	SNP	PMCHL2	ENST00000306564	human	ensembl	54_36p	+1	known	missense	c.70	p.K24Q	0.928	HMMPfam_Pro-MCH	HMMPfam_Pro-MCH	-	no_errors
TJP2	9414	genome.wustl.edu	36	9	71030774	71030774	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	9	71030774	71030774	C	T	SNP	TJP2	NM_004817	human	genbank	54_36p	+1	validated	missense	c.1073	p.T358I	1.000	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMPfam_SH3_2,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Guanylate_kin	-	no_errors
ENAM	10117	genome.wustl.edu	36	4	71727841	71727841	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	4	71727841	71727841	T	A	SNP	ENAM	NM_031889	human	genbank	54_36p	+1	validated	missense	c.1834	p.S612T	0.000	NULL	NULL	-	no_errors
TRPA1	8989	genome.wustl.edu	36	8	73127396	73127396	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	8	73127396	73127396	C	G	SNP	TRPA1	NM_007332	human	genbank	54_36p	-1	reviewed	missense	c.1803	p.R601S	0.708	superfamily_Ankyrin repeat,HMMSmart_SM00248	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,PatternScan_EF_HAND_1,HMMPfam_Ion_trans	-	no_errors
CSPG4	1464	genome.wustl.edu	36	15	73762350	73762350	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	15	73762350	73762350	T	A	SNP	CSPG4	NM_001897	human	genbank	54_36p	-1	reviewed	missense	c.4537	p.I1513F	0.331	NULL	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors
XRRA1	143570	genome.wustl.edu	36	11	74310002	74310002	+	Silent	SNP	G	C	C	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	11	74310002	74310002	G	C	SNP	XRRA1	NM_182969	human	genbank	54_36p	-1	validated	silent	c.537	p.A179	1.000	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors
C17orf56	146705	genome.wustl.edu	36	17	76819835	76819835	+	Silent	SNP	C	A	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	17	76819835	76819835	C	A	SNP	C17orf56	NM_144679	human	genbank	54_36p	-1	predicted	silent	c.852	p.L284	1.000	NULL	superfamily_ENTH/VHS domain	-	no_errors
FAM46A	55603	genome.wustl.edu	36	6	82516885	82516885	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	6	82516885	82516885	A	C	SNP	FAM46A	NM_017633	human	genbank	54_36p	-1	validated	missense	c.575	p.V192G	1.000	HMMPfam_DUF1693	HMMPfam_DUF1693	-	no_errors
PROS1	5627	genome.wustl.edu	36	3	95086316	95086316	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	3	95086316	95086316	C	G	SNP	PROS1	NM_000313	human	genbank	54_36p	-1	reviewed	missense	c.1438	p.E480Q	1.000	superfamily_ConA_like_lec_gl	HMMSmart_GLA,superfamily_VitK_dep_GLA,HMMPfam_Gla,PatternScan_GLA_1,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMSmart_EGF_CA,HMMPfam_EGF_CA,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors
CPN1	1369	genome.wustl.edu	36	10	101825735	101825735	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	10	101825735	101825735	C	T	SNP	CPN1	NM_001308	human	genbank	54_36p	-1	reviewed	missense	c.343	p.V115I	0.096	superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14	superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain	-	no_errors
CASP1	834	genome.wustl.edu	36	11	104410292	104410292	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	11	104410292	104410292	C	G	SNP	CASP1	NM_033292	human	genbank	54_36p	-1	reviewed	missense	c.127	p.V43L	0.000	HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD	HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD,PatternScan_AMP_BINDING,superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS	-	no_errors
COL17A1	1308	genome.wustl.edu	36	10	105830418	105830418	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	10	105830418	105830418	C	A	SNP	COL17A1	NM_000494	human	genbank	54_36p	-1	reviewed	missense	c.4	p.D2Y	1.000	NULL	HMMPfam_Collagen	-	no_errors
CD8BP	0	genome.wustl.edu	36	2	106487182	106487182	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	2	106487182	106487182	C	T	SNP	CD8BP	ENST00000303432	human	ensembl	54_36p	+1	known	missense	c.592	p.R198W	0.847	NULL	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG	-	no_errors
RPH3A	22895	genome.wustl.edu	36	12	111798943	111798943	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	12	111798943	111798943	G	A	SNP	RPH3A	NM_014954	human	genbank	54_36p	+1	validated	missense	c.1048	p.G350R	0.153	NULL	HMMPfam_RPH3A_effector,superfamily_FYVE_PHD_ZnF,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
DNAJC25-GNG10	0	genome.wustl.edu	36	9	113433783	113433783	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	9	113433783	113433783	G	C	SNP	DNAJC25-GNG10	NM_004125	human	genbank	54_36p	+1	validated	missense	c.275	p.R92P	0.990	superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ	superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ,HMMSmart_GGL,HMMPfam_G-gamma	-	no_errors
CCDC80	151887	genome.wustl.edu	36	3	113841332	113841332	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	3	113841332	113841332	T	A	SNP	CCDC80	NM_199511	human	genbank	54_36p	-1	validated	missense	c.111	p.K37N	0.006	NULL	NULL	-	no_errors
ZFP37	7539	genome.wustl.edu	36	9	114844923	114844923	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	9	114844923	114844923	T	A	SNP	ZFP37	NM_003408	human	genbank	54_36p	-1	provisional	missense	c.1796	p.K599I	0.998	superfamily_SSF57667	HMMSmart_KRAB,HMMPfam_KRAB,superfamily_Krueppel-associated_box,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ORM2	5005	genome.wustl.edu	36	9	116132570	116132570	+	Silent	SNP	T	T	C	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	9	116132570	116132570	T	C	SNP	ORM2	NM_000608	human	genbank	54_36p	+1	reviewed	silent	c.150	p.F50	0.000	superfamily_Lipocalins,HMMPfam_Lipocalin	superfamily_Lipocalins,HMMPfam_Lipocalin	-	no_errors
TECTA	7007	genome.wustl.edu	36	11	120505971	120505971	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	11	120505971	120505971	G	T	SNP	TECTA	NM_005422	human	genbank	54_36p	+1	reviewed	missense	c.2782	p.G928W	0.206	HMMPfam_C8	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00215,HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_FA58C_2,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1,superfamily_EGF/Laminin	-	no_errors
LHX2	9355	genome.wustl.edu	36	9	125817399	125817399	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	9	125817399	125817399	G	C	SNP	LHX2	NM_004789	human	genbank	54_36p	+1	reviewed	missense	c.501	p.L167F	1.000	HMMSmart_LIM,HMMPfam_LIM	superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
TMEM132D	121256	genome.wustl.edu	36	12	128750985	128750985	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	12	128750985	128750985	G	A	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	silent	c.291	p.Y97	1.000	NULL	NULL	-	no_errors
FREQ	23413	genome.wustl.edu	36	9	132024756	132024756	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	9	132024756	132024756	T	G	SNP	FREQ	NM_014286	human	genbank	54_36p	+1	reviewed	missense	c.314	p.F105C	1.000	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
FAM78A	286336	genome.wustl.edu	36	9	133126260	133126260	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	9	133126260	133126260	T	C	SNP	FAM78A	NM_033387	human	genbank	54_36p	-1	validated	missense	c.622	p.T208A	1.000	NULL	NULL	-	no_errors
DDX31	64794	genome.wustl.edu	36	9	134535363	134535363	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	9	134535363	134535363	C	T	SNP	DDX31	NM_022779	human	genbank	54_36p	-1	reviewed	missense	c.95	p.R32K	0.001	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
ARHGEF5	7984	genome.wustl.edu	36	7	143691427	143691427	+	Silent	SNP	A	A	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	7	143691427	143691427	A	G	SNP	ARHGEF5	NM_005435	human	genbank	54_36p	+1	reviewed	silent	c.732	p.G244	0.002	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors
PLXNB3	5365	genome.wustl.edu	36	X	152686981	152686981	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	X	152686981	152686981	G	A	SNP	PLXNB3	NM_005393	human	genbank	54_36p	+1	provisional	silent	c.1170	p.L390	0.018	superfamily_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP	-	no_errors
LOC284685	284685	genome.wustl.edu	36	1	164513386	164513386	+	RNA	SNP	G	G	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	1	164513386	164513386	G	T	SNP	LOC284685	XR_017685	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
XPR1	9213	genome.wustl.edu	36	1	179060573	179060573	+	Silent	SNP	C	C	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	1	179060573	179060573	C	G	SNP	XPR1	NM_004736	human	genbank	54_36p	+1	validated	silent	c.825	p.G275	1.000	HMMPfam_EXS	HMMPfam_SPX,HMMPfam_EXS	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179350207	179350207	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	2	179350207	179350207	T	G	SNP	TTN	NM_133379	human	genbank	54_36p	-1	reviewed	missense	c.4728	p.K1576N	1.000	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_Titin_Z,HMMPfam_ig,PatternScan_IG_MHC,PatternScan_THIOL_PROTEASE_HIS	-	no_errors
USP13	8975	genome.wustl.edu	36	3	180952845	180952845	+	Silent	SNP	C	C	G	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	3	180952845	180952845	C	G	SNP	USP13	NM_003940	human	genbank	54_36p	+1	validated	silent	c.1788	p.P596	0.979	superfamily_SSF54001,HMMPfam_UCH	HMMSmart_ZnF_UBP,HMMPfam_zf-UBP,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,HMMPfam_UBA,HMMSmart_UBA,superfamily_UBA_like,PatternScan_UCH_2_2	-	no_errors
PLEKHA6	22874	genome.wustl.edu	36	1	202466204	202466204	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	1	202466204	202466204	C	A	SNP	PLEKHA6	NM_014935	human	genbank	54_36p	-1	validated	missense	c.2543	p.S848I	0.986	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
YOD1	55432	genome.wustl.edu	36	1	205290834	205290834	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	1	205290834	205290834	G	C	SNP	YOD1	NM_018566	human	genbank	54_36p	-1	validated	missense	c.165	p.D55E	0.921	superfamily_Ubiquitin-like	superfamily_Ubiquitin-like,superfamily_Cysteine proteinases,HMMPfam_OTU,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
IRS1	3667	genome.wustl.edu	36	2	227370859	227370859	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	2	227370859	227370859	G	A	SNP	IRS1	NM_005544	human	genbank	54_36p	-1	validated	silent	c.840	p.I280	1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI	-	no_errors
SPHKAP	80309	genome.wustl.edu	36	2	228592544	228592544	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	2	228592544	228592544	C	A	SNP	SPHKAP	NM_030623	human	genbank	54_36p	-1	validated	missense	c.1270	p.V424L	0.010	NULL	HMMPfam_AKAP_110	-	no_errors
ERO1LB	56605	genome.wustl.edu	36	1	234456416	234456416	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2530-01A-01D-1526-09	TCGA-36-2530-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	990deb59-4f7f-422d-b470-b116edd32d33	4e3f49a5-cb83-4014-8840-ce71b8427e09	1	234456416	234456416	C	T	SNP	ERO1LB	NM_019891	human	genbank	54_36p	-1	provisional	nonsense	c.828	p.W276*	1.000	superfamily_ERO1,HMMPfam_ERO1	superfamily_ERO1,HMMPfam_ERO1	-	no_errors
