Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
PKP3	11187	genome.wustl.edu	36	11	387268	387268	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	11	387268	387268	G	A	SNP	PKP3	NM_007183	human	genbank	54_36p	+1	reviewed	missense	c.767	p.S256N	1.000	NULL	superfamily_ARM-type_fold,HMMPfam_Arm,HMMSmart_ARM	-	no_errors
BSG	682	genome.wustl.edu	36	19	532411	532411	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	19	532411	532411	G	A	SNP	BSG	NM_001728	human	genbank	54_36p	+1	reviewed	missense	c.889	p.G297S	0.355	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
TH	7054	genome.wustl.edu	36	11	2144767	2144767	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	11	2144767	2144767	G	T	SNP	TH	NM_199292	human	genbank	54_36p	-1	reviewed	missense	c.860	p.A287D	0.939	superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains,HMMPfam_Biopterin_H	superfamily_ACT-like,superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains,HMMPfam_Biopterin_H,PatternScan_BIOPTERIN_HYDROXYL	-	no_errors
GNA11	2767	genome.wustl.edu	36	19	3070342	3070342	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	19	3070342	3070342	T	G	SNP	GNA11	NM_002067	human	genbank	54_36p	+1	validated	missense	c.874	p.F292V	1.000	superfamily_SSF52540,HMMPfam_G-alpha	superfamily_SSF52540,HMMPfam_G-alpha,superfamily_Transducn_insert	-	no_errors
FRAG1	27315	genome.wustl.edu	36	11	3795179	3795179	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	11	3795179	3795179	C	A	SNP	FRAG1	NM_014489	human	genbank	54_36p	+1	validated	missense	c.186	p.F62L	1.000	NULL	HMMPfam_Frag1	-	no_errors
SRD5A1	6715	genome.wustl.edu	36	5	6716040	6716040	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	5	6716040	6716040	C	T	SNP	SRD5A1	NM_001047	human	genbank	54_36p	+1	validated	missense	c.674	p.T225M	0.923	HMMPfam_Steroid_dh	HMMPfam_Steroid_dh	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517830	7517830	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	17	7517830	7517830	G	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.833	p.P278R	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
ITIH5	80760	genome.wustl.edu	36	10	7645300	7645300	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	10	7645300	7645300	G	T	SNP	ITIH5	NM_030569	human	genbank	54_36p	-1	validated	missense	c.2581	p.Q861K	0.000	HMMPfam_ITI_HC_C	HMMSmart_SM00609,HMMPfam_VIT,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_ITI_HC_C	-	no_errors
C3AR1	719	genome.wustl.edu	36	12	8102930	8102930	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	12	8102930	8102930	G	A	SNP	C3AR1	NM_004054	human	genbank	54_36p	-1	validated	silent	c.1119	p.S373	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
USP7	7874	genome.wustl.edu	36	16	8897092	8897092	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	16	8897092	8897092	C	G	SNP	USP7	NM_003470	human	genbank	54_36p	-1	validated	missense	c.2827	p.E943Q	1.000	NULL	superfamily_Traf_like,HMMSmart_MATH,HMMPfam_MATH,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
MICAL2	9645	genome.wustl.edu	36	11	12240617	12240617	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	11	12240617	12240617	C	A	SNP	MICAL2	NM_014632	human	genbank	54_36p	+1	provisional	missense	c.3349	p.P1117T	1.000	NULL	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
STX10	8677	genome.wustl.edu	36	19	13121652	13121652	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	19	13121652	13121652	A	G	SNP	STX10	NM_003765	human	genbank	54_36p	-1	provisional	missense	c.95	p.L32P	1.000	superfamily_t-snare proteins,HMMPfam_Syntaxin-6_N	superfamily_t-snare proteins,HMMPfam_Syntaxin-6_N,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN	-	no_errors
RAI1	10743	genome.wustl.edu	36	17	17637827	17637827	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	17	17637827	17637827	G	A	SNP	RAI1	NM_030665	human	genbank	54_36p	+1	reviewed	silent	c.840	p.Q280	0.999	NULL	HMMSmart_SM00249	-	no_errors
OR6S1	341799	genome.wustl.edu	36	14	20179469	20179469	+	Silent	SNP	C	C	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	14	20179469	20179469	C	T	SNP	OR6S1	NM_001001968	human	genbank	54_36p	-1	provisional	silent	c.222	p.L74	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PTCHD1	139411	genome.wustl.edu	36	X	23321983	23321983	+	Silent	SNP	G	G	C	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	X	23321983	23321983	G	C	SNP	PTCHD1	NM_173495	human	genbank	54_36p	+1	validated	silent	c.2427	p.L809	1.000	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
SLC5A11	115584	genome.wustl.edu	36	16	24830250	24830250	+	Silent	SNP	C	C	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	16	24830250	24830250	C	G	SNP	SLC5A11	NM_052944	human	genbank	54_36p	+1	provisional	silent	c.1923	p.A641	0.000	NULL	HMMPfam_SSF	-	no_errors
SCAND3	114821	genome.wustl.edu	36	6	28651021	28651021	+	Silent	SNP	T	T	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	6	28651021	28651021	T	A	SNP	SCAND3	NM_052923	human	genbank	54_36p	-1	provisional	silent	c.1440	p.R480	0.042	superfamily_RNaseH_fold,HMMPfam_rve	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_RNaseH_fold,HMMPfam_rve,HMMPfam_hATC	-	no_errors
SYNJ1	8867	genome.wustl.edu	36	21	32940702	32940702	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	21	32940702	32940702	G	A	SNP	SYNJ1	NM_003895	human	genbank	54_36p	-1	validated	missense	c.3119	p.T1040I	0.870	NULL	HMMPfam_Syja_N,superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,HMMPfam_DUF1866,superfamily_RNA-binding domain RBD	-	no_errors
TAPBP	6892	genome.wustl.edu	36	6	33389766	33389766	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	6	33389766	33389766	C	T	SNP	TAPBP	NM_003190	human	genbank	54_36p	-1	reviewed	missense	c.31	p.A11T	0.997	NULL	superfamily_SSF48726,HMMPfam_C1-set	-	no_errors
SIM2	6493	genome.wustl.edu	36	21	36993997	36993997	+	Silent	SNP	C	C	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	21	36993997	36993997	C	A	SNP	SIM2	NM_005069	human	genbank	54_36p	+1	reviewed	silent	c.81	p.L27	1.000	HMMPfam_HLH,HMMSmart_SM00353	HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3,HMMSmart_SM00086,HMMPfam_SIM_C	-	no_errors
C2orf56	55471	genome.wustl.edu	36	2	37316750	37316750	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	2	37316750	37316750	A	T	SNP	C2orf56	NM_144736	human	genbank	54_36p	+1	validated	missense	c.224	p.Y75F	0.996	NULL	HMMPfam_DUF185	-	no_errors
N4BP2	55728	genome.wustl.edu	36	4	39820831	39820831	+	Silent	SNP	T	T	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	4	39820831	39820831	T	A	SNP	N4BP2	NM_018177	human	genbank	54_36p	+1	reviewed	silent	c.4929	p.A1643	0.775	HMMPfam_DUF1771	superfamily_UBA-like,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_DUF1771,HMMSmart_SM00463,HMMPfam_Smr	-	no_errors
EP300	2033	genome.wustl.edu	36	22	39867025	39867025	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	22	39867025	39867025	A	G	SNP	EP300	NM_001429	human	genbank	54_36p	+1	reviewed	missense	c.1906	p.K636E	1.000	HMMPfam_KIX,superfamily_KIX	superfamily_TAZ_finger,HMMPfam_zf-TAZ,HMMSmart_ZnF_TAZ,HMMPfam_KIX,superfamily_KIX,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1,HMMPfam_DUF902,HMMPfam_DUF906,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_Creb_binding,superfamily_Nuc_recept_coact	-	no_errors
CDC2L5	8621	genome.wustl.edu	36	7	40084218	40084218	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	7	40084218	40084218	G	C	SNP	CDC2L5	NM_003718	human	genbank	54_36p	+1	reviewed	missense	c.2870	p.R957P	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
GFAP	2670	genome.wustl.edu	36	17	40344267	40344267	+	Silent	SNP	C	C	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	17	40344267	40344267	C	T	SNP	GFAP	NM_002055	human	genbank	54_36p	-1	reviewed	silent	c.990	p.R330	0.711	HMMPfam_Filament	HMMPfam_Filament_head,HMMPfam_Filament,PatternScan_IF	-	no_errors
PRODH2	58510	genome.wustl.edu	36	19	40995618	40995618	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	19	40995618	40995618	C	G	SNP	PRODH2	NM_021232	human	genbank	54_36p	-1	reviewed	missense	c.158	p.G53A	0.763	NULL	HMMPfam_Pro_dh,superfamily_SSF51730	-	no_errors
ELL3	80237	genome.wustl.edu	36	15	41854858	41854858	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	15	41854858	41854858	C	T	SNP	ELL3	NM_025165	human	genbank	54_36p	-1	validated	missense	c.583	p.V195I	0.271	HMMPfam_ELL	HMMPfam_ELL,HMMPfam_Occludin_ELL	-	no_errors
MCAT	27349	genome.wustl.edu	36	22	41859115	41859115	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	22	41859115	41859115	C	T	SNP	MCAT	NM_173467	human	genbank	54_36p	-1	reviewed	missense	c.1051	p.G351S	0.996	superfamily_FabD/lysophospholipase-like,HMMPfam_Acyl_transf_1	superfamily_FabD/lysophospholipase-like,HMMPfam_Acyl_transf_1,PatternScan_ABC_TRANSPORTER_1,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase	-	no_errors
ZNF585A	199704	genome.wustl.edu	36	19	42338621	42338621	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	19	42338621	42338621	C	T	SNP	ZNF585A	NM_152655	human	genbank	54_36p	-1	validated	missense	c.113	p.R38H	0.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
POTEA	340441	genome.wustl.edu	36	8	43271390	43271390	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	8	43271390	43271390	C	G	SNP	POTEA	NM_001005365	human	genbank	54_36p	+1	provisional	missense	c.370	p.Q124E	0.987	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
AIRE	326	genome.wustl.edu	36	21	44537399	44537399	+	Silent	SNP	G	G	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	21	44537399	44537399	G	T	SNP	AIRE	NM_000383	human	genbank	54_36p	+1	reviewed	silent	c.1191	p.L397	0.089	NULL	HMMPfam_Sp100,superfamily_SAND domain-like,HMMPfam_SAND,HMMSmart_SM00258,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
OGDH	4967	genome.wustl.edu	36	7	44682330	44682330	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	7	44682330	44682330	G	T	SNP	OGDH	NM_001003941	human	genbank	54_36p	+1	reviewed	missense	c.1263	p.M421I	0.001	HMMPfam_E1_dh	superfamily_SSF52518,HMMPfam_E1_dh	-	no_errors
TMEM106C	79022	genome.wustl.edu	36	12	46646027	46646027	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	12	46646027	46646027	C	A	SNP	TMEM106C	NM_024056	human	genbank	54_36p	+1	validated	missense	c.391	p.L131I	0.104	HMMPfam_DUF1356	HMMPfam_DUF1356	-	no_errors
DCC	1630	genome.wustl.edu	36	18	49166508	49166508	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	18	49166508	49166508	T	A	SNP	DCC	NM_005215	human	genbank	54_36p	+1	validated	splice_site	c.2455+2	e16+2	1.000	-	-	-	no_errors
CPT1B	1375	genome.wustl.edu	36	22	49362731	49362731	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	22	49362731	49362731	C	A	SNP	CPT1B	NM_004377	human	genbank	54_36p	-1	reviewed	missense	c.169	p.G57C	1.000	NULL	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2	-	no_errors
MUT	4594	genome.wustl.edu	36	6	49534986	49534986	+	Silent	SNP	C	C	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	6	49534986	49534986	C	A	SNP	MUT	NM_000255	human	genbank	54_36p	-1	reviewed	silent	c.153	p.L51	1.000	superfamily_Cobalamin (vitamin B12)-dependent enzymes	superfamily_Cobalamin (vitamin B12)-dependent enzymes,HMMPfam_MM_CoA_mutase,PatternScan_METMALONYL_COA_MUTASE,superfamily_Cobalamin (vitamin B12)-binding domain,HMMPfam_B12-binding	-	no_errors
SALL4	57167	genome.wustl.edu	36	20	49839077	49839077	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	20	49839077	49839077	A	T	SNP	SALL4	NM_020436	human	genbank	54_36p	-1	reviewed	missense	c.2472	p.S824R	0.019	NULL	HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
PRKD2	25865	genome.wustl.edu	36	19	51909042	51909042	+	Silent	SNP	G	G	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	19	51909042	51909042	G	A	SNP	PRKD2	NM_001079880	human	genbank	54_36p	-1	reviewed	silent	c.297	p.D99	1.000	NULL	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
GLT8D1	55830	genome.wustl.edu	36	3	52704595	52704595	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	3	52704595	52704595	G	C	SNP	GLT8D1	NM_001010983	human	genbank	54_36p	-1	reviewed	missense	c.694	p.L232V	1.000	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8	-	no_errors
LOC647169	647169	genome.wustl.edu	36	6	52739046	52739046	+	Silent	SNP	T	T	C	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	6	52739046	52739046	T	C	SNP	LOC647169	XM_930196	human	genbank	54_36p	-1	model	silent	c.504	p.L168	0.904	superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C	superfamily_Thioredoxin-like,HMMPfam_GST_N,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C	-	no_errors
TSPYL2	64061	genome.wustl.edu	36	X	53131918	53131918	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	X	53131918	53131918	G	A	SNP	TSPYL2	NM_022117	human	genbank	54_36p	+1	validated	missense	c.1619	p.G540D	0.003	NULL	HMMPfam_NAP	-	no_errors
RCN3	57333	genome.wustl.edu	36	19	54732207	54732207	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	19	54732207	54732207	C	T	SNP	RCN3	NM_020650	human	genbank	54_36p	+1	provisional	missense	c.551	p.T184I	0.995	superfamily_SSF47473	superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,PatternScan_ER_TARGET	-	no_errors
METTL2A	339175	genome.wustl.edu	36	17	57879769	57879769	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	17	57879769	57879769	C	G	SNP	METTL2A	NM_181725	human	genbank	54_36p	+1	validated	missense	c.676	p.R226G	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_12	-	no_errors
DACT1	51339	genome.wustl.edu	36	14	58183484	58183484	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	14	58183484	58183484	C	T	SNP	DACT1	NM_016651	human	genbank	54_36p	+1	validated	missense	c.2390	p.T797M	0.028	NULL	NULL	-	no_errors
PRPF6	24148	genome.wustl.edu	36	20	62095273	62095273	+	Silent	SNP	A	A	C	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	20	62095273	62095273	A	C	SNP	PRPF6	NM_012469	human	genbank	54_36p	+1	reviewed	silent	c.429	p.S143	1.000	HMMPfam_PRP1_N	HMMPfam_PRP1_N,HMMSmart_HAT,superfamily_SSF48452,HMMPfam_TPR_1	-	no_errors
SLC8A3	6547	genome.wustl.edu	36	14	69703471	69703471	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	14	69703471	69703471	A	C	SNP	SLC8A3	NM_183002	human	genbank	54_36p	-1	reviewed	missense	c.1422	p.F474L	1.000	HMMSmart_SM00237,HMMPfam_Calx-beta	HMMPfam_Na_Ca_ex,HMMSmart_SM00237,HMMPfam_Calx-beta	-	no_errors
LRRC20	55222	genome.wustl.edu	36	10	71731141	71731141	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	10	71731141	71731141	T	G	SNP	LRRC20	NM_207119	human	genbank	54_36p	-1	validated	missense	c.530	p.E177A	0.916	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors
SNX14	57231	genome.wustl.edu	36	6	86338762	86338762	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	6	86338762	86338762	C	G	SNP	SNX14	NM_153816	human	genbank	54_36p	-1	reviewed	missense	c.311	p.C104S	1.000	NULL	HMMPfam_PXA,HMMSmart_SM00313,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,superfamily_PX domain,HMMSmart_SM00312,HMMPfam_PX,HMMPfam_Nexin_C	-	no_errors
TRRAP	8295	genome.wustl.edu	36	7	98412205	98412205	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	7	98412205	98412205	A	G	SNP	TRRAP	NM_003496	human	genbank	54_36p	+1	validated	missense	c.8048	p.N2683S	1.000	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_COPPER_BLUE,superfamily_Protein prenylyltransferase,HMMPfam_FAT,superfamily_TPR-like,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FATC	-	no_errors
TMOD1	7111	genome.wustl.edu	36	9	99393503	99393503	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	9	99393503	99393503	G	A	SNP	TMOD1	NM_003275	human	genbank	54_36p	+1	provisional	missense	c.980	p.R327Q	1.000	HMMPfam_Tropomodulin,superfamily_SSF52047	HMMPfam_Tropomodulin,superfamily_SSF52047	-	no_errors
RCOR1	23186	genome.wustl.edu	36	14	102250513	102250513	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	14	102250513	102250513	G	A	SNP	RCOR1	NM_015156	human	genbank	54_36p	+1	validated	missense	c.850	p.V284I	1.000	NULL	HMMPfam_ELM2,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors
PMPCB	9512	genome.wustl.edu	36	7	102731609	102731609	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	7	102731609	102731609	A	T	SNP	PMPCB	NM_004279	human	genbank	54_36p	+1	reviewed	missense	c.542	p.E181V	1.000	superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16	superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16,PatternScan_INSULINASE,HMMPfam_Peptidase_M16_C	-	no_errors
IL1RAPL2	26280	genome.wustl.edu	36	X	104897944	104897944	+	Silent	SNP	T	T	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	X	104897944	104897944	T	A	SNP	IL1RAPL2	NM_017416	human	genbank	54_36p	+1	reviewed	silent	c.1695	p.P565	0.992	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors
DRD2	1813	genome.wustl.edu	36	11	112800319	112800319	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	11	112800319	112800319	G	A	SNP	DRD2	NM_000795	human	genbank	54_36p	-1	reviewed	missense	c.265	p.P89S	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ZNF80	7634	genome.wustl.edu	36	3	115438124	115438124	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	3	115438124	115438124	C	T	SNP	ZNF80	NM_007136	human	genbank	54_36p	-1	validated	missense	c.488	p.C163Y	0.204	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
UPF3B	65109	genome.wustl.edu	36	X	118856398	118856398	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	X	118856398	118856398	T	A	SNP	UPF3B	NM_080632	human	genbank	54_36p	-1	reviewed	nonsense	c.967	p.K323*	0.999	NULL	HMMPfam_Smg4_UPF3,superfamily_RNA-binding domain RBD	-	no_errors
PTPN4	5775	genome.wustl.edu	36	2	120356570	120356570	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	2	120356570	120356570	A	T	SNP	PTPN4	NM_002830	human	genbank	54_36p	+1	reviewed	missense	c.488	p.Q163L	1.000	HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C,HMMPfam_FA,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
POPDC2	64091	genome.wustl.edu	36	3	120861831	120861831	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	3	120861831	120861831	C	A	SNP	POPDC2	NM_022135	human	genbank	54_36p	-1	reviewed	missense	c.130	p.G44C	1.000	NULL	HMMPfam_Popeye,superfamily_cAMP-binding domain-like	-	no_errors
LAMA2	3908	genome.wustl.edu	36	6	129650813	129650813	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	6	129650813	129650813	G	A	SNP	LAMA2	NM_000426	human	genbank	54_36p	+1	reviewed	missense	c.2666	p.C889Y	1.000	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_LAM_1	HMMSmart_LamNT,HMMPfam_Laminin_N,superfamily_Gal_bind_like,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_SSF57196,PatternScan_EGF_2,HMMSmart_LamB,HMMPfam_Laminin_B,HMMPfam_Laminin_I,superfamily_SSF56399,HMMPfam_Laminin_II,HMMSmart_LamG,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors
OPCML	4978	genome.wustl.edu	36	11	131795343	131795343	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	11	131795343	131795343	A	T	SNP	OPCML	NM_002545	human	genbank	54_36p	-1	reviewed	missense	c.992	p.L331H	1.000	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_I-set,HMMPfam_ig	-	no_errors
SLC13A4	26266	genome.wustl.edu	36	7	135016918	135016918	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	7	135016918	135016918	A	T	SNP	SLC13A4	NM_012450	human	genbank	54_36p	-1	validated	missense	c.1814	p.V605D	0.217	HMMPfam_Na_sulph_symp	HMMPfam_Na_sulph_symp	-	no_errors
PARP12	64761	genome.wustl.edu	36	7	139370883	139370883	+	Silent	SNP	C	C	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	7	139370883	139370883	C	G	SNP	PARP12	NM_022750	human	genbank	54_36p	-1	provisional	silent	c.2052	p.S684	0.000	superfamily_ADP-ribosylation	HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger,superfamily_ADP-ribosylation,HMMPfam_PARP	-	no_errors
ARAP3	64411	genome.wustl.edu	36	5	141032647	141032647	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	5	141032647	141032647	G	A	SNP	ARAP3	NM_022481	human	genbank	54_36p	-1	reviewed	nonsense	c.1123	p.Q375*	1.000	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP,HMMPfam_RA	-	no_errors
ENSG00000204987	0	genome.wustl.edu	36	7	141535713	141535713	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	7	141535713	141535713	C	G	SNP	ENSG00000204987	ENST00000378229	human	ensembl	54_36p	+1	known	missense	c.1066	p.P356A	0.003	HMMPfam_Glyco_hydro_31	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_N6_MTASE	-	no_stop_codon
FLG	2312	genome.wustl.edu	36	1	150551252	150551252	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	1	150551252	150551252	G	A	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.2734	p.R912C	0.003	HMMPfam_Filaggrin	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors
SLC36A1	206358	genome.wustl.edu	36	5	150826952	150826952	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	5	150826952	150826952	G	C	SNP	SLC36A1	NM_078483	human	genbank	54_36p	+1	reviewed	splice_site	c.420-1	e5-1	0.998	-	-	-	no_errors
MLL3	58508	genome.wustl.edu	36	7	151548640	151548640	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	7	151548640	151548640	T	A	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	nonsense	c.3613	p.K1205*	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors
RIF1	55183	genome.wustl.edu	36	2	152002097	152002097	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	2	152002097	152002097	G	C	SNP	RIF1	NM_018151	human	genbank	54_36p	+1	validated	missense	c.1469	p.G490A	1.000	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_ABC_TRANSPORTER_1	-	no_errors
SI	6476	genome.wustl.edu	36	3	166224241	166224241	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	3	166224241	166224241	T	A	SNP	SI	NM_001041	human	genbank	54_36p	-1	validated	missense	c.2910	p.K970N	0.000	HMMSmart_SM00018,superfamily_Trefoil	HMMSmart_SM00018,superfamily_Trefoil,HMMPfam_Trefoil,PatternScan_P_TREFOIL,HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2	-	no_errors
RGS1	5996	genome.wustl.edu	36	1	190813996	190813996	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	1	190813996	190813996	G	C	SNP	RGS1	NM_002922	human	genbank	54_36p	+1	reviewed	missense	c.302	p.S101T	0.068	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	-	no_errors
SYT14	255928	genome.wustl.edu	36	1	208395767	208395767	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	1	208395767	208395767	T	G	SNP	SYT14	NM_153262	human	genbank	54_36p	+1	validated	missense	c.1243	p.S415A	1.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
FN1	2335	genome.wustl.edu	36	2	216001219	216001219	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	2	216001219	216001219	C	T	SNP	FN1	NM_212482	human	genbank	54_36p	-1	reviewed	missense	c.773	p.C258Y	1.000	superfamily_Fibronectin type I module,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_SM00058	superfamily_Fibronectin type I module,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_SM00058,PatternScan_EGF_1,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
TGFB2	7042	genome.wustl.edu	36	1	216681253	216681253	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	1	216681253	216681253	C	G	SNP	TGFB2	NM_003238	human	genbank	54_36p	+1	validated	missense	c.1171	p.L391V	1.000	superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204	HMMPfam_TGFb_propeptide,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1	-	no_errors
KCNE4	23704	genome.wustl.edu	36	2	223626157	223626157	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-36-2542-01A-01D-1526-09	TCGA-36-2542-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8a9443a6-52aa-425a-8bb1-20f431e1dc6d	ed30ac44-0fcf-4db0-b9c0-3733f049c4ad	2	223626157	223626157	G	T	SNP	KCNE4	NM_080671	human	genbank	54_36p	+1	validated	missense	c.365	p.G122V	0.998	NULL	HMMPfam_ISK_Channel	-	no_errors
