Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ND2	0	genome.wustl.edu	36	MT	4892	4892	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	MT	4892	4892	T	C	SNP	MT-ND2	ENST00000361453	human	ensembl	54_36p	+1	known	missense	c.422	p.I141T	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1,HMMPfam_NADH_dehy_S2_C	-	no_stop_codon:bad_bp_length_for_coding_region
DMRT3	58524	genome.wustl.edu	36	9	980675	980675	+	Silent	SNP	C	A	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	9	980675	980675	C	A	SNP	DMRT3	NM_021240	human	genbank	54_36p	+1	validated	silent	c.1089	p.P363	0.949	NULL	superfamily_DM_DNA_bd,HMMPfam_DM,HMMSmart_DM,PatternScan_DM_1,HMMPfam_DMA	-	no_errors
POLN	353497	genome.wustl.edu	36	4	2047001	2047001	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	4	2047001	2047001	C	A	SNP	POLN	NM_181808	human	genbank	54_36p	-1	validated	missense	c.2431	p.D811Y	0.426	superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_A,HMMSmart_SM00482	superfamily_Ribonuclease H-like,superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_A,HMMSmart_SM00482	-	no_errors
SIGLEC1	6614	genome.wustl.edu	36	20	3631957	3631957	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	20	3631957	3631957	G	C	SNP	SIGLEC1	NM_023068	human	genbank	54_36p	-1	reviewed	missense	c.1115	p.S372C	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set	-	no_errors
ZZEF1	23140	genome.wustl.edu	36	17	3867772	3867772	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	17	3867772	3867772	G	T	SNP	ZZEF1	NM_015113	human	genbank	54_36p	-1	validated	missense	c.7643	p.S2548Y	1.000	NULL	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,superfamily_Galactose-binding domain-like,HMMPfam_APC10,superfamily_Spermadhesin CUB domain,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1	-	no_errors
C11orf42	160298	genome.wustl.edu	36	11	6188160	6188160	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	11	6188160	6188160	G	C	SNP	C11orf42	NM_173525	human	genbank	54_36p	+1	predicted	missense	c.577	p.V193L	0.932	NULL	NULL	-	no_errors
SCNN1A	6337	genome.wustl.edu	36	12	6354247	6354247	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	12	6354247	6354247	C	A	SNP	SCNN1A	ENST00000360168	human	ensembl	54_36p	-1	known	missense	c.141	p.E47D	0.003	NULL	HMMPfam_ASC,PatternScan_ASC	-	no_errors
DCHS1	8642	genome.wustl.edu	36	11	6601340	6601340	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	11	6601340	6601340	C	T	SNP	DCHS1	NM_003737	human	genbank	54_36p	-1	reviewed	missense	c.8143	p.V2715M	0.996	superfamily_Cadherin,HMMPfam_Cadherin	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519128	7519128	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	17	7519128	7519128	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.527	p.C176Y	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
RUNDC2A	84127	genome.wustl.edu	36	16	12053347	12053347	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	16	12053347	12053347	C	A	SNP	RUNDC2A	NM_032167	human	genbank	54_36p	+1	validated	missense	c.891	p.D297E	0.996	NULL	HMMPfam_RUN,HMMSmart_SM00593	-	no_errors
FRMPD4	9758	genome.wustl.edu	36	X	12646663	12646663	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	X	12646663	12646663	C	A	SNP	FRMPD4	NM_014728	human	genbank	54_36p	+1	validated	missense	c.3797	p.P1266H	0.043	NULL	PatternScan_WW_DOMAIN_1,PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors
LOC729389	729389	genome.wustl.edu	36	19	12866143	12866143	+	RNA	SNP	G	G	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	19	12866143	12866143	G	T	SNP	LOC729389	XR_015945	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SOX6	55553	genome.wustl.edu	36	11	16024720	16024720	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	11	16024720	16024720	C	A	SNP	SOX6	NM_033326	human	genbank	54_36p	-1	reviewed	missense	c.1539	p.E513D	1.000	NULL	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
CDH18	1016	genome.wustl.edu	36	5	19519190	19519190	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	5	19519190	19519190	A	T	SNP	CDH18	NM_004934	human	genbank	54_36p	-1	reviewed	missense	c.1859	p.L620H	1.000	NULL	superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
LOC81691	81691	genome.wustl.edu	36	16	20747346	20747346	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	16	20747346	20747346	C	G	SNP	LOC81691	NM_030941	human	genbank	54_36p	+1	validated	missense	c.1144	p.H382D	0.941	superfamily_Ribonuclease H-like,HMMSmart_SM00479	superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_RNA-binding domain RBD	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	20903944	20903944	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	16	20903944	20903944	C	T	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.7621	p.V2541I	0.980	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_Prefoldin,HMMPfam_Dynein_heavy	-	no_errors
IFNA14	3448	genome.wustl.edu	36	9	21229728	21229728	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	9	21229728	21229728	G	T	SNP	IFNA14	NM_002172	human	genbank	54_36p	-1	validated	missense	c.207	p.N69K	0.001	HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd	HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D	-	no_errors
SUSD2	56241	genome.wustl.edu	36	22	22913177	22913177	+	Silent	SNP	C	C	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	22	22913177	22913177	C	T	SNP	SUSD2	NM_019601	human	genbank	54_36p	+1	validated	silent	c.1650	p.F550	1.000	HMMSmart_VWD,HMMPfam_VWD	HMMSmart_SO,HMMPfam_Somatomedin_B,superfamily_SSF90188,PatternScan_SMB_1,HMMSmart_AMOP,HMMPfam_AMOP,HMMSmart_VWD,HMMPfam_VWD,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-	no_errors
EMILIN1	11117	genome.wustl.edu	36	2	27159021	27159021	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	2	27159021	27159021	C	G	SNP	EMILIN1	NM_007046	human	genbank	54_36p	+1	validated	missense	c.1078	p.R360G	0.515	NULL	HMMPfam_EMI,HMMPfam_Collagen,superfamily_TNF_like,HMMPfam_C1q	-	no_errors
PTK2B	2185	genome.wustl.edu	36	8	27311036	27311036	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	8	27311036	27311036	G	T	SNP	PTK2B	NM_004103	human	genbank	54_36p	+1	reviewed	missense	c.18	p.E6D	0.981	NULL	HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_Focal_AT,superfamily_FAT domain of focal adhesion kinase	-	no_errors
SNX17	9784	genome.wustl.edu	36	2	27449623	27449623	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	2	27449623	27449623	C	G	SNP	SNX17	NM_014748	human	genbank	54_36p	+1	reviewed	missense	c.262	p.Q88E	1.000	HMMPfam_PX,HMMSmart_PX,superfamily_PX	HMMPfam_PX,HMMSmart_PX,superfamily_PX,HMMPfam_FERM_M	-	no_errors
SETD1A	9739	genome.wustl.edu	36	16	30898853	30898853	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	16	30898853	30898853	C	G	SNP	SETD1A	NM_014712	human	genbank	54_36p	+1	provisional	nonsense	c.4245	p.Y1415*	0.988	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SSF82199,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET	-	no_errors
BIRC6	57448	genome.wustl.edu	36	2	32514146	32514146	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	2	32514146	32514146	A	C	SNP	BIRC6	NM_016252	human	genbank	54_36p	+1	reviewed	missense	c.3488	p.E1163A	1.000	NULL	superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,HMMPfam_BIR,superfamily_Galactose-binding domain-like,superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	-	no_errors
KIFC1	3833	genome.wustl.edu	36	6	33479855	33479855	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	6	33479855	33479855	G	A	SNP	KIFC1	NM_002263	human	genbank	54_36p	+1	validated	missense	c.727	p.G243R	0.608	NULL	superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
PCGF2	7703	genome.wustl.edu	36	17	34145226	34145226	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	17	34145226	34145226	C	G	SNP	PCGF2	NM_007144	human	genbank	54_36p	-1	reviewed	missense	c.811	p.A271P	0.101	NULL	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
C6orf1	221491	genome.wustl.edu	36	6	34322568	34322568	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	6	34322568	34322568	A	C	SNP	C6orf1	NM_001008703	human	genbank	54_36p	-1	validated	missense	c.181	p.S61A	0.998	NULL	NULL	-	no_errors
KCNH4	23415	genome.wustl.edu	36	17	37586434	37586434	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	17	37586434	37586434	G	T	SNP	KCNH4	NM_012285	human	genbank	54_36p	-1	reviewed	missense	c.56	p.A19D	1.000	HMMSmart_PAS	PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS,HMMSmart_PAC,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding	-	no_errors
MYRIP	25924	genome.wustl.edu	36	3	40206707	40206707	+	Silent	SNP	C	C	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	3	40206707	40206707	C	T	SNP	MYRIP	NM_015460	human	genbank	54_36p	+1	validated	silent	c.1414	p.L472	0.001	NULL	superfamily_FYVE_PHD_ZnF,HMMPfam_MOBP	-	no_errors
MATN4	8785	genome.wustl.edu	36	20	43360031	43360031	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	20	43360031	43360031	G	A	SNP	MATN4	NM_003833	human	genbank	54_36p	-1	reviewed	missense	c.1520	p.A507V	0.984	HMMSmart_VWA,superfamily_SSF53300,HMMPfam_VWA	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_Matrilin_ccoil	-	no_errors
C21orf29	54084	genome.wustl.edu	36	21	44775380	44775380	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	21	44775380	44775380	G	C	SNP	C21orf29	NM_144991	human	genbank	54_36p	-1	provisional	missense	c.607	p.R203G	0.996	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP	-	no_errors
HCN1	348980	genome.wustl.edu	36	5	45298062	45298062	+	Silent	SNP	C	C	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	5	45298062	45298062	C	T	SNP	HCN1	NM_021072	human	genbank	54_36p	-1	validated	silent	c.2391	p.V797	0.960	NULL	PatternScan_CNMP_BINDING_2,HMMPfam_Ion_trans_N,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1	-	no_errors
LOC388401	388401	genome.wustl.edu	36	17	46935519	46935519	+	RNA	SNP	G	G	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	17	46935519	46935519	G	A	SNP	LOC388401	XR_016879	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.987	-	-	-	pseudogene
CYP4Z1	199974	genome.wustl.edu	36	1	47356110	47356110	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	1	47356110	47356110	C	A	SNP	CYP4Z1	NM_178134	human	genbank	54_36p	+1	reviewed	missense	c.1435	p.H479N	0.014	superfamily_Cytochrome_P450,HMMPfam_p450	superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors
CEACAM8	1088	genome.wustl.edu	36	19	47779287	47779287	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	19	47779287	47779287	G	T	SNP	CEACAM8	NM_001816	human	genbank	54_36p	-1	validated	missense	c.1001	p.A334D	0.001	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
PORCN	64840	genome.wustl.edu	36	X	48260557	48260557	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	X	48260557	48260557	G	A	SNP	PORCN	NM_203475	human	genbank	54_36p	+1	reviewed	missense	c.1216	p.A406T	1.000	NULL	HMMPfam_MBOAT	-	no_errors
ACVRL1	94	genome.wustl.edu	36	12	50593636	50593636	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	12	50593636	50593636	G	T	SNP	ACVRL1	NM_000020	human	genbank	54_36p	+1	reviewed	nonsense	c.340	p.G114*	0.000	NULL	HMMPfam_Activin_recp,superfamily_SSF57302,HMMPfam_TGF_beta_GS,HMMSmart_GS,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
FRMD6	122786	genome.wustl.edu	36	14	51256706	51256706	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	14	51256706	51256706	C	T	SNP	FRMD6	NM_001042481	human	genbank	54_36p	+1	validated	missense	c.1184	p.P395L	0.996	NULL	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,superfamily_FERM_3-hlx,HMMPfam_FERM_M,superfamily_SSF50729,HMMPfam_FERM_C	-	no_errors
A1CF	29974	genome.wustl.edu	36	10	52243749	52243749	+	Silent	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	10	52243749	52243749	C	A	SNP	A1CF	NM_138932	human	genbank	54_36p	-1	reviewed	silent	c.1221	p.L407	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like	-	no_errors
MCM3	4172	genome.wustl.edu	36	6	52251607	52251607	+	Silent	SNP	C	C	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	6	52251607	52251607	C	T	SNP	MCM3	NM_002388	human	genbank	54_36p	-1	reviewed	silent	c.771	p.R257	1.000	superfamily_Nucleic_acid_OB,HMMSmart_MCM	superfamily_Nucleic_acid_OB,HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540,HMMSmart_AAA,PatternScan_MCM_1	-	no_errors
TINAG	27283	genome.wustl.edu	36	6	54299658	54299658	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	6	54299658	54299658	C	A	SNP	TINAG	NM_014464	human	genbank	54_36p	+1	validated	missense	c.609	p.S203R	0.998	superfamily_Cysteine proteinases	HMMSmart_SM00201,PatternScan_SMB_1,superfamily_Cysteine proteinases,HMMSmart_SM00645,HMMPfam_Peptidase_C1,PatternScan_THIOL_PROTEASE_ASN	-	no_errors
DHX29	54505	genome.wustl.edu	36	5	54617000	54617000	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	5	54617000	54617000	C	T	SNP	DHX29	NM_019030	human	genbank	54_36p	-1	validated	missense	c.1234	p.V412I	1.000	NULL	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors
CPLX4	339302	genome.wustl.edu	36	18	55115032	55115032	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	18	55115032	55115032	C	A	SNP	CPLX4	NM_181654	human	genbank	54_36p	-1	reviewed	missense	c.361	p.D121Y	1.000	NULL	NULL	-	no_errors
PCK1	5105	genome.wustl.edu	36	20	55572035	55572035	+	Silent	SNP	T	T	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	20	55572035	55572035	T	A	SNP	PCK1	NM_002591	human	genbank	54_36p	+1	reviewed	silent	c.807	p.G269	0.980	HMMPfam_PEPCK,superfamily_SSF53795	superfamily_PEP_carboxykinase_N,HMMPfam_PEPCK,superfamily_SSF53795,PatternScan_PEPCK_GTP	-	no_errors
GPR182	11318	genome.wustl.edu	36	12	55676008	55676008	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	12	55676008	55676008	C	G	SNP	GPR182	NM_007264	human	genbank	54_36p	+1	reviewed	missense	c.748	p.Q250E	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
TMEM194A	23306	genome.wustl.edu	36	12	55758778	55758778	+	Silent	SNP	T	T	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	12	55758778	55758778	T	C	SNP	TMEM194A	NM_015257	human	genbank	54_36p	-1	validated	silent	c.18	p.K6	1.000	NULL	HMMPfam_DUF2215	-	no_errors
GPR97	222487	genome.wustl.edu	36	16	56269717	56269717	+	Silent	SNP	G	G	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	16	56269717	56269717	G	T	SNP	GPR97	NM_170776	human	genbank	54_36p	+1	provisional	silent	c.480	p.G160	0.071	NULL	PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2	-	no_errors
GPBP1	65056	genome.wustl.edu	36	5	56578735	56578735	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	5	56578735	56578735	G	T	SNP	GPBP1	NM_022913	human	genbank	54_36p	+1	validated	missense	c.740	p.G247V	1.000	NULL	NULL	-	no_errors
LOC100129933	0	genome.wustl.edu	36	11	58417251	58417251	+	RNA	SNP	G	G	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	11	58417251	58417251	G	T	SNP	LOC100129933	XR_037279	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
BIRC8	112401	genome.wustl.edu	36	19	58485097	58485097	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	19	58485097	58485097	G	C	SNP	BIRC8	NM_033341	human	genbank	54_36p	-1	validated	missense	c.343	p.L115V	0.512	superfamily_Inhibitor of apoptosis (IAP) repeat	superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,PatternScan_BIR_REPEAT_1,HMMPfam_BIR,HMMSmart_SM00184	-	no_errors
AXIN2	8313	genome.wustl.edu	36	17	60984923	60984923	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	17	60984923	60984923	T	A	SNP	AXIN2	NM_004655	human	genbank	54_36p	-1	reviewed	missense	c.278	p.Y93F	1.000	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,HMMPfam_Axin_b-cat_bind,HMMPfam_DIX,HMMSmart_SM00021	-	no_errors
FLRT1	23769	genome.wustl.edu	36	11	63641996	63641996	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	11	63641996	63641996	G	C	SNP	FLRT1	NM_013280	human	genbank	54_36p	+1	reviewed	missense	c.1681	p.V561L	0.951	NULL	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00364,HMMSmart_SM00082,HMMPfam_fn3	-	no_errors
LOC388955	0	genome.wustl.edu	36	2	63703478	63703478	+	RNA	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	2	63703478	63703478	C	A	SNP	LOC388955	NR_003131	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.072	-	-	-	pseudogene
COG8	84342	genome.wustl.edu	36	16	67924259	67924259	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	16	67924259	67924259	G	A	SNP	COG8	NM_032382	human	genbank	54_36p	-1	reviewed	missense	c.1441	p.R481C	1.000	NULL	HMMPfam_Dor1	-	no_errors
CBWD6	644019	genome.wustl.edu	36	9	68495277	68495277	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	9	68495277	68495277	C	G	SNP	CBWD6	NM_001085457	human	genbank	54_36p	-1	provisional	missense	c.1081	p.G361R	1.000	HMMPfam_CobW_C,superfamily_Cbl_biosynth_CobW-like_C	superfamily_SSF52540,HMMPfam_cobW,HMMPfam_CobW_C,superfamily_Cbl_biosynth_CobW-like_C	-	no_errors
PTPRR	5801	genome.wustl.edu	36	12	69364297	69364297	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	12	69364297	69364297	C	G	SNP	PTPRR	NM_002849	human	genbank	54_36p	-1	reviewed	missense	c.1374	p.K458N	0.990	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
HYDIN	54768	genome.wustl.edu	36	16	69653572	69653572	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	16	69653572	69653572	C	T	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	splice_site	c.2376+1	e16+1	1.000	-	-	-	no_errors
ZMYM3	9203	genome.wustl.edu	36	X	70389554	70389554	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	X	70389554	70389554	G	C	SNP	ZMYM3	NM_005096	human	genbank	54_36p	-1	validated	missense	c.277	p.P93A	1.000	NULL	HMMPfam_zf-FCS,HMMSmart_SM00746	-	no_errors
ERCC6L	54821	genome.wustl.edu	36	X	71344458	71344458	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	X	71344458	71344458	G	C	SNP	ERCC6L	NM_017669	human	genbank	54_36p	-1	validated	missense	c.884	p.T295S	1.000	HMMPfam_SNF2_N	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors
DCTN1	1639	genome.wustl.edu	36	2	74449499	74449499	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	2	74449499	74449499	A	G	SNP	DCTN1	NM_004082	human	genbank	54_36p	-1	reviewed	missense	c.1718	p.L573S	1.000	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Spectrin repeat	-	no_errors
ARHGAP24	83478	genome.wustl.edu	36	4	87134791	87134791	+	Silent	SNP	G	G	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	4	87134791	87134791	G	A	SNP	ARHGAP24	NM_001025616	human	genbank	54_36p	+1	validated	silent	c.960	p.V320	0.984	superfamily_GTPase activation domain GAP,HMMSmart_SM00324	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
GAS8	2622	genome.wustl.edu	36	16	88637167	88637167	+	Silent	SNP	C	T	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	16	88637167	88637167	C	T	SNP	GAS8	NM_001481	human	genbank	54_36p	+1	reviewed	silent	c.1350	p.D450	1.000	NULL	NULL	-	no_errors
FAM13A	10144	genome.wustl.edu	36	4	89928087	89928087	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	4	89928087	89928087	G	A	SNP	FAM13A	NM_014883	human	genbank	54_36p	-1	validated	nonsense	c.1111	p.R371*	0.987	NULL	superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors
LOC100132553	0	genome.wustl.edu	36	8	92239484	92239484	+	RNA	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	8	92239484	92239484	C	A	SNP	LOC100132553	XR_038881	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.988	-	-	-	pseudogene
KIAA1429	25962	genome.wustl.edu	36	8	95608486	95608486	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	8	95608486	95608486	G	C	SNP	KIAA1429	NM_015496	human	genbank	54_36p	-1	validated	missense	c.1162	p.L388V	1.000	NULL	NULL	-	no_errors
MGC72080	389538	genome.wustl.edu	36	7	97439557	97439557	+	RNA	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	7	97439557	97439557	C	A	SNP	MGC72080	NR_002822	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.001	-	-	-	pseudogene
PCCA	5095	genome.wustl.edu	36	13	99713019	99713019	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	13	99713019	99713019	C	G	SNP	PCCA	NM_000282	human	genbank	54_36p	+1	reviewed	missense	c.752	p.S251C	1.000	HMMPfam_CPSase_L_D2,superfamily_SSF56059	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like,HMMPfam_CPSase_L_D2,superfamily_SSF56059,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Rudmnt_hyb_motif,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN	-	no_errors
MLL5	55904	genome.wustl.edu	36	7	104535078	104535078	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	7	104535078	104535078	G	C	SNP	MLL5	NM_018682	human	genbank	54_36p	+1	reviewed	missense	c.2938	p.G980R	1.000	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain	-	no_errors
RTN4IP1	84816	genome.wustl.edu	36	6	107126643	107126643	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	6	107126643	107126643	G	C	SNP	RTN4IP1	NM_032730	human	genbank	54_36p	-1	reviewed	missense	c.1112	p.P371R	0.998	NULL	superfamily_GroES-like,HMMPfam_ADH_N,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N,PatternScan_QOR_ZETA_CRYSTAL	-	no_errors
FOXO3	2309	genome.wustl.edu	36	6	108989306	108989306	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	6	108989306	108989306	G	T	SNP	FOXO3	NM_001455	human	genbank	54_36p	+1	reviewed	missense	c.202	p.D68Y	0.995	NULL	PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,superfamily_SSF46785,HMMSmart_FH,PatternScan_FORK_HEAD_2	-	no_errors
UBASH3B	84959	genome.wustl.edu	36	11	122177193	122177193	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	11	122177193	122177193	C	A	SNP	UBASH3B	NM_032873	human	genbank	54_36p	+1	validated	missense	c.1538	p.A513E	1.000	superfamily_SSF53254,HMMPfam_PGAM	superfamily_UBA_like,HMMPfam_UBA,HMMSmart_UBA,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF53254,HMMPfam_PGAM	-	no_errors
LOC100128516	0	genome.wustl.edu	36	11	122336901	122336901	+	RNA	SNP	T	T	C	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	11	122336901	122336901	T	C	SNP	LOC100128516	XR_039709	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
OR8A1	390275	genome.wustl.edu	36	11	123946080	123946080	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	11	123946080	123946080	T	A	SNP	OR8A1	NM_001005194	human	genbank	54_36p	+1	provisional	missense	c.906	p.N302K	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ALDH1L1	10840	genome.wustl.edu	36	3	127360159	127360159	+	Silent	SNP	C	C	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	3	127360159	127360159	C	T	SNP	ALDH1L1	NM_012190	human	genbank	54_36p	-1	reviewed	silent	c.141	p.E47	1.000	HMMPfam_Formyl_trans_N,superfamily_formyl_transf	PatternScan_PHOSPHOPANTETHEINE,HMMPfam_Formyl_trans_N,superfamily_formyl_transf,PatternScan_GART,superfamily_FMT_C_like,HMMPfam_Formyl_trans_C,superfamily_ACP_like,superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors
FAM84B	157638	genome.wustl.edu	36	8	127638227	127638227	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	8	127638227	127638227	C	G	SNP	FAM84B	NM_174911	human	genbank	54_36p	-1	provisional	missense	c.590	p.S197T	1.000	NULL	NULL	-	no_errors
MCM6	4175	genome.wustl.edu	36	2	136333411	136333411	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	2	136333411	136333411	G	A	SNP	MCM6	NM_005915	human	genbank	54_36p	-1	reviewed	missense	c.1292	p.A431V	1.000	HMMSmart_SM00350,HMMPfam_MCM,superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_Nucleic acid-binding proteins,HMMSmart_SM00350,HMMPfam_MCM,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_MCM_1	-	no_errors
DGKI	9162	genome.wustl.edu	36	7	136779369	136779369	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	7	136779369	136779369	C	T	SNP	DGKI	NM_004717	human	genbank	54_36p	-1	reviewed	missense	c.2779	p.D927N	1.000	superfamily_ANK	PatternScan_ZF_DAG_PE_1,HMMSmart_C1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_DAGKc,HMMPfam_DAGK_acc,HMMSmart_DAGKa,superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-	no_errors
LYSMD1	388695	genome.wustl.edu	36	1	149400976	149400976	+	Silent	SNP	A	A	T	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	1	149400976	149400976	A	T	SNP	LYSMD1	NM_212551	human	genbank	54_36p	-1	validated	silent	c.405	p.G135	0.000	NULL	superfamily_SSF54106,HMMSmart_LysM,HMMPfam_LysM	-	no_errors
NOS3	4846	genome.wustl.edu	36	7	150323244	150323244	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	7	150323244	150323244	C	A	SNP	NOS3	NM_000603	human	genbank	54_36p	+1	validated	missense	c.179	p.T60N	0.079	NULL	superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-	no_errors
KPRP	448834	genome.wustl.edu	36	1	150998779	150998779	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	1	150998779	150998779	G	A	SNP	KPRP	NM_001025231	human	genbank	54_36p	+1	provisional	missense	c.91	p.A31T	0.013	NULL	NULL	-	no_errors
SLAMF6	114836	genome.wustl.edu	36	1	158727560	158727560	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	1	158727560	158727560	A	G	SNP	SLAMF6	NM_052931	human	genbank	54_36p	-1	reviewed	missense	c.625	p.S209P	0.011	superfamily_Immunoglobulin	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors
uc001gpg.2	0	genome.wustl.edu	36	1	180710002	180710002	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	1	180710002	180710002	C	A	SNP	uc001gpg.2	ENST00000367561	human	ensembl	54_36p	+1	known	missense	c.1238	p.A413D	0.002	NULL	NULL	-	no_errors
LAMC1	3915	genome.wustl.edu	36	1	181376193	181376193	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	1	181376193	181376193	A	G	SNP	LAMC1	NM_002293	human	genbank	54_36p	+1	reviewed	missense	c.4505	p.N1502S	1.000	NULL	HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_Grow_fac_recept,HMMSmart_LamB,HMMPfam_Laminin_B,PatternScan_EGF_2	-	no_errors
COL3A1	1281	genome.wustl.edu	36	2	189574561	189574561	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	2	189574561	189574561	G	A	SNP	COL3A1	NM_000090	human	genbank	54_36p	+1	reviewed	splice_site	c.2391+1	e34+1	1.000	-	-	-	no_errors
CLK1	1195	genome.wustl.edu	36	2	201432668	201432668	+	Silent	SNP	C	C	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	2	201432668	201432668	C	G	SNP	CLK1	NM_004071	human	genbank	54_36p	-1	reviewed	silent	c.528	p.V176	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ORC2L	4999	genome.wustl.edu	36	2	201498901	201498901	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	2	201498901	201498901	C	A	SNP	ORC2L	NM_006190	human	genbank	54_36p	-1	reviewed	splice_site	c.1051-1	e11-1	1.000	-	-	-	no_errors
KCNH1	3756	genome.wustl.edu	36	1	209322822	209322822	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	1	209322822	209322822	T	A	SNP	KCNH1	NM_172362	human	genbank	54_36p	-1	reviewed	missense	c.481	p.S161C	1.000	NULL	superfamily_PYP-like sensor domain (PAS domain),HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors
B3GALNT2	148789	genome.wustl.edu	36	1	233680214	233680214	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	1	233680214	233680214	G	A	SNP	B3GALNT2	NM_152490	human	genbank	54_36p	-1	provisional	missense	c.1433	p.P478L	0.962	NULL	HMMPfam_Galactosyl_T	-	no_errors
AQP12B	285192	genome.wustl.edu	36	2	241270921	241270921	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-42-2589-01A-01D-1526-09	TCGA-42-2589-10A-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	b6d00ccc-315f-466f-af5b-0b2de560281d	7fd91650-78df-4d3f-b9a4-62e921b476a9	2	241270921	241270921	C	G	SNP	AQP12B	NM_001102467	human	genbank	54_36p	-1	validated	missense	c.7	p.G3R	0.561	NULL	superfamily_MIP	-	no_errors
