Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
CPNE9	151835	genome.wustl.edu	36	3	9742736	9742736	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	3	9742736	9742736	G	A	SNP	CPNE9	NM_153635	human	genbank	54_36p	+1	validated	splice_site	c.1344+1	e18+1	1.000	-	-	-	no_errors
RDH8	50700	genome.wustl.edu	36	19	9990569	9990569	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	19	9990569	9990569	G	T	SNP	RDH8	NM_015725	human	genbank	54_36p	+1	validated	missense	c.425	p.S142I	1.000	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	no_errors
LOC727867	727867	genome.wustl.edu	36	21	13451212	13451212	+	RNA	SNP	G	G	A	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	21	13451212	13451212	G	A	SNP	LOC727867	XR_036978	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
KIF13A	63971	genome.wustl.edu	36	6	17870780	17870780	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	6	17870780	17870780	C	G	SNP	KIF13A	ENST00000378814	human	ensembl	54_36p	-1	known	missense	c.5231	p.G1744A	0.245	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMPfam_FHA	-	no_stop_codon
LOC100131966	0	genome.wustl.edu	36	18	18066485	18066485	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	18	18066485	18066485	C	A	SNP	LOC100131966	XM_001714344	human	genbank	54_36p	+1	model	missense	c.631	p.P211T	0.000	NULL	NULL	-	no_errors
LOC642669	642669	genome.wustl.edu	36	14	18828286	18828286	+	Silent	SNP	A	A	G	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	14	18828286	18828286	A	G	SNP	LOC642669	XM_926123	human	genbank	54_36p	+1	model	silent	c.111	p.P37	0.983	NULL	NULL	-	no_errors
OR4L1	122742	genome.wustl.edu	36	14	19598781	19598781	+	Silent	SNP	G	G	T	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	14	19598781	19598781	G	T	SNP	OR4L1	NM_001004717	human	genbank	54_36p	+1	provisional	silent	c.738	p.V246	0.998	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC728401	728401	genome.wustl.edu	36	5	21519838	21519838	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	5	21519838	21519838	G	C	SNP	LOC728401	XM_001128001	human	genbank	54_36p	-1	model	missense	c.40	p.P14A	0.010	NULL	NULL	-	no_errors
SLC2A11	66035	genome.wustl.edu	36	22	22554737	22554737	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	22	22554737	22554737	G	A	SNP	SLC2A11	ENST00000398363	human	ensembl	54_36p	+1	known	splice_site	c.538-1	e6-1	0.101	-	-	-	no_start_codon
LOC100129979	0	genome.wustl.edu	36	15	30564434	30564434	+	Silent	SNP	C	T	T	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	15	30564434	30564434	C	T	SNP	LOC100129979	XM_001718810	human	genbank	54_36p	+1	model	silent	c.744	p.S248	0.000	NULL	NULL	-	no_errors
LARGE	9215	genome.wustl.edu	36	22	32042103	32042103	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	22	32042103	32042103	G	C	SNP	LARGE	NM_004737	human	genbank	54_36p	-1	reviewed	missense	c.1419	p.D473E	0.976	NULL	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8	-	no_errors
LARGE	9215	genome.wustl.edu	36	22	32107919	32107919	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	22	32107919	32107919	C	A	SNP	LARGE	NM_004737	human	genbank	54_36p	-1	reviewed	missense	c.1117	p.V373L	1.000	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
RPN2	6185	genome.wustl.edu	36	20	35291859	35291859	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	20	35291859	35291859	C	A	SNP	RPN2	NM_002951	human	genbank	54_36p	+1	reviewed	missense	c.1564	p.P522T	0.996	HMMPfam_Ribophorin_II	HMMPfam_Ribophorin_II	-	no_errors
C7orf36	57002	genome.wustl.edu	36	7	39572547	39572547	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	7	39572547	39572547	C	G	SNP	C7orf36	NM_020192	human	genbank	54_36p	+1	predicted	missense	c.5	p.S2W	1.000	NULL	HMMPfam_Yae1_N	-	no_errors
FRMPD2	143162	genome.wustl.edu	36	10	49100394	49100394	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	10	49100394	49100394	A	C	SNP	FRMPD2	NM_001018071	human	genbank	54_36p	-1	reviewed	missense	c.1423	p.L475V	0.959	HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M	HMMSmart_SM00750,superfamily_Ubiquitin-like,HMMSmart_SM00295,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_FERM_C,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
LAMB2	3913	genome.wustl.edu	36	3	49143833	49143833	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	3	49143833	49143833	T	C	SNP	LAMB2	NM_002292	human	genbank	54_36p	-1	reviewed	missense	c.695	p.Y232C	1.000	HMMSmart_LamNT,HMMPfam_Laminin_N	HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2	-	no_errors
NUP62	23636	genome.wustl.edu	36	19	55104029	55104029	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	19	55104029	55104029	C	G	SNP	NUP62	NM_012346	human	genbank	54_36p	-1	reviewed	missense	c.848	p.S283T	0.018	NULL	HMMPfam_Nsp1_C	-	no_errors
FCHO2	115548	genome.wustl.edu	36	5	72369487	72369487	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	5	72369487	72369487	G	A	SNP	FCHO2	ENST00000287761	human	ensembl	54_36p	+1	known	missense	c.1042	p.A348T	0.022	NULL	HMMPfam_FCH,HMMSmart_FCH	-	no_stop_codon
LOC440015	0	genome.wustl.edu	36	3	75800777	75800777	+	RNA	SNP	C	C	T	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	3	75800777	75800777	C	T	SNP	LOC440015	XR_015234	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.001	-	-	-	no_errors
LOC441644	0	genome.wustl.edu	36	12	93059030	93059030	+	Silent	SNP	C	T	T	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	12	93059030	93059030	C	T	SNP	LOC441644	XM_001714973	human	genbank	54_36p	+1	model	silent	c.774	p.P258	0.987	NULL	HMMPfam_ELM2	-	no_errors
ROBO4	54538	genome.wustl.edu	36	11	124262200	124262200	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	11	124262200	124262200	G	T	SNP	ROBO4	NM_019055	human	genbank	54_36p	-1	validated	missense	c.2318	p.A773D	0.152	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
GOLGA1	2800	genome.wustl.edu	36	9	126691334	126691334	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	9	126691334	126691334	G	A	SNP	GOLGA1	NM_002077	human	genbank	54_36p	-1	reviewed	missense	c.1670	p.A557V	0.003	NULL	superfamily_Prefoldin,HMMPfam_GRIP,HMMSmart_SM00755	-	no_errors
COL5A2	1290	genome.wustl.edu	36	2	189609596	189609596	+	Silent	SNP	T	T	C	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	2	189609596	189609596	T	C	SNP	COL5A2	NM_000393	human	genbank	54_36p	-1	reviewed	silent	c.4104	p.R1368	1.000	HMMSmart_COLFI,HMMPfam_COLFI	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI	-	no_errors
HCG22	285834	genome.wustl.edu	36	6	31131071	31131078	+	RNA	DEL	AAGGAAGG	AAGGAAGG	-	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	AAGGAAGG	AAGGAAGG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	6	31131071	31131078	AAGGAAGG	-	DEL	HCG22	NR_003948	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	(deletion:rna[31129963,31135632])	pseudogene
AKD2	0	genome.wustl.edu	36	6	110013023	110013025	+	Splice_Site	DEL	CTT	CTT	-	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	CTT	CTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	6	110013023	110013025	CTT	-	DEL	AKD2	ENST00000341338	human	ensembl	54_36p	-1	known	splice_site_del	c.2109+3_2109+1	e19-1	0.003:0.003:0.001	-	-	(deletion:intron[110007523,110013023], cds_exon[110013024,110013133])	no_errors
MIRN620	0	genome.wustl.edu	36	12	115070798	115070801	+	RNA	DEL	TATA	TATA	-	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	TATA	TATA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	12	115070798	115070801	TATA	-	DEL	MIRN620	ENST00000385232	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.006:0.005:0.001:0.001	-	-	(deletion:rna[115070748,115070842])	no_errors
ENSG00000222183	0	genome.wustl.edu	36	8	118099670	118099673	+	RNA	DEL	ATAA	ATAA	-	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	ATAA	ATAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	8	118099670	118099673	ATAA	-	DEL	ENSG00000222183	ENST00000410251	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.515:0.455:0.256:0.163	-	-	(deletion:rna[118099366,118099672], flank[118099673,118149672])	no_errors
EMX2OS	196047	genome.wustl.edu	36	10	119238447	119238448	+	RNA	DEL	TG	TG	-	novel	unknown	TCGA-57-1586-01A-02W-0633-09	TCGA-57-1586-11A-01W-0633-09	TG	TG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	28f5e4a4-de41-4c6e-9d8b-a2526743ac79	746ffb07-3eab-4c11-81f5-00cd3717bb53	10	119238447	119238448	TG	-	DEL	EMX2OS	NR_002791	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.002:0.003	-	-	(deletion:rna[119233794,119240412])	no_errors
