Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
LOC644132	644132	genome.wustl.edu	36	17	177536	177536	+	RNA	SNP	C	T	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	17	177536	177536	C	T	SNP	LOC644132	XR_017532	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
TP53	7157	genome.wustl.edu	36	17	7517822	7517822	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	17	7517822	7517822	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.841	p.D281Y	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
KIDINS220	57498	genome.wustl.edu	36	2	8807871	8807871	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	2	8807871	8807871	T	C	SNP	KIDINS220	NM_020738	human	genbank	54_36p	-1	validated	missense	c.3236	p.Y1079C	0.995	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_KAP_NTPase,superfamily_SAM/Pointed domain	-	no_errors
PIK3CD	5293	genome.wustl.edu	36	1	9702809	9702809	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	1	9702809	9702809	C	A	SNP	PIK3CD	NM_005026	human	genbank	54_36p	+1	validated	missense	c.1392	p.N464K	1.000	superfamily_C2_CaLB,HMMPfam_PI3K_C2	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
OFCC1	266553	genome.wustl.edu	36	6	10016754	10016754	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	6	10016754	10016754	G	A	SNP	OFCC1	NM_153003	human	genbank	54_36p	-1	provisional	missense	c.326	p.T109M	1.000	NULL	NULL	-	no_errors
ZNF18	7566	genome.wustl.edu	36	17	11835077	11835077	+	Silent	SNP	T	T	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	17	11835077	11835077	T	G	SNP	ZNF18	NM_144680	human	genbank	54_36p	-1	provisional	silent	c.516	p.S172	0.000	NULL	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_KRAB,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
HOOK2	29911	genome.wustl.edu	36	19	12736679	12736679	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	19	12736679	12736679	G	A	SNP	HOOK2	NM_013312	human	genbank	54_36p	-1	validated	silent	c.1776	p.D592	1.000	HMMPfam_HOOK	HMMPfam_HOOK	-	no_errors
PRAMEF1	65121	genome.wustl.edu	36	1	12778277	12778277	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	1	12778277	12778277	C	T	SNP	PRAMEF1	NM_023013	human	genbank	54_36p	+1	provisional	missense	c.970	p.H324Y	0.001	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
IQSEC1	9922	genome.wustl.edu	36	3	12941207	12941207	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	3	12941207	12941207	C	T	SNP	IQSEC1	NM_014869	human	genbank	54_36p	-1	validated	missense	c.1646	p.R549H	0.999	superfamily_Sec7 domain,HMMPfam_Sec7,HMMSmart_SM00222	superfamily_Sec7 domain,HMMPfam_Sec7,HMMSmart_SM00222,superfamily_PH domain-like,HMMSmart_SM00233	-	no_errors
GRIN2B	2904	genome.wustl.edu	36	12	13659770	13659770	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	12	13659770	13659770	G	T	SNP	GRIN2B	NM_000834	human	genbank	54_36p	-1	reviewed	missense	c.1424	p.T475N	1.000	superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd	superfamily_SSF53822,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C	-	no_errors
TRIO	7204	genome.wustl.edu	36	5	14459748	14459748	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	5	14459748	14459748	A	G	SNP	TRIO	NM_007118	human	genbank	54_36p	+1	validated	silent	c.4926	p.S1642	0.638	superfamily_SH3-domain	superfamily_CRAL/TRIO domain,HMMSmart_SM00516,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
TXNRD2	10587	genome.wustl.edu	36	22	18245679	18245679	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	22	18245679	18245679	A	C	SNP	TXNRD2	ENST00000400516	human	ensembl	54_36p	-1	known	missense	c.1379	p.V460G	1.000	superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain,HMMPfam_Pyr_redox_dim	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2,PatternScan_PYRIDINE_REDOX_1,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain,HMMPfam_Pyr_redox_dim	-	no_errors
LOC645771	645771	genome.wustl.edu	36	13	18874651	18874651	+	RNA	SNP	G	G	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	13	18874651	18874651	G	A	SNP	LOC645771	XR_017036	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.387	-	-	-	pseudogene
HERC2P2	400322	genome.wustl.edu	36	15	20869974	20869974	+	RNA	SNP	C	C	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	15	20869974	20869974	C	A	SNP	HERC2P2	NR_002824	human	genbank	54_36p	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
MUC15	143662	genome.wustl.edu	36	11	26539216	26539216	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	11	26539216	26539216	T	C	SNP	MUC15	NM_145650	human	genbank	54_36p	-1	validated	missense	c.977	p.D326G	0.946	NULL	NULL	-	no_errors
EOMES	8320	genome.wustl.edu	36	3	27738024	27738024	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	3	27738024	27738024	C	T	SNP	EOMES	NM_005442	human	genbank	54_36p	-1	reviewed	missense	c.766	p.G256R	1.000	NULL	HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors
C2orf71	388939	genome.wustl.edu	36	2	29150407	29150407	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	2	29150407	29150407	A	G	SNP	C2orf71	NM_001029883	human	genbank	54_36p	-1	predicted	silent	c.225	p.C75	0.001	NULL	NULL	-	no_errors
HCG4	54435	genome.wustl.edu	36	6	29868514	29868514	+	RNA	SNP	G	A	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	6	29868514	29868514	G	A	SNP	HCG4	NR_002139	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0.014	-	-	-	pseudogene
KIFC1	3833	genome.wustl.edu	36	6	33480730	33480730	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	6	33480730	33480730	G	C	SNP	KIFC1	NM_002263	human	genbank	54_36p	+1	validated	missense	c.880	p.E294Q	0.965	superfamily_SSF52540	superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
MYH9	4627	genome.wustl.edu	36	22	35042630	35042630	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	22	35042630	35042630	C	A	SNP	MYH9	NM_002473	human	genbank	54_36p	-1	reviewed	missense	c.1258	p.A420S	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1,superfamily_Regulator of G-protein signaling RGS	-	no_errors
TRIOBP	11078	genome.wustl.edu	36	22	36451137	36451137	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	22	36451137	36451137	G	T	SNP	TRIOBP	NM_001039141	human	genbank	54_36p	+1	reviewed	missense	c.2628	p.E876D	0.025	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
TTC21A	199223	genome.wustl.edu	36	3	39145314	39145314	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	3	39145314	39145314	C	G	SNP	TTC21A	NM_001105513	human	genbank	54_36p	+1	validated	missense	c.1807	p.P603A	0.148	superfamily_TPR-like,HMMSmart_SM00028	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	-	no_errors
LOC644315	644315	genome.wustl.edu	36	17	42154579	42154579	+	RNA	SNP	C	C	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	17	42154579	42154579	C	G	SNP	LOC644315	XR_017529	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.999	-	-	-	pseudogene
LOC644397	644397	genome.wustl.edu	36	17	42450036	42450036	+	RNA	SNP	T	T	C	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	17	42450036	42450036	T	C	SNP	LOC644397	XR_042323	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.123	-	-	-	pseudogene
CCDC13	152206	genome.wustl.edu	36	3	42773687	42773687	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	3	42773687	42773687	T	A	SNP	CCDC13	NM_144719	human	genbank	54_36p	-1	validated	missense	c.245	p.H82L	0.998	NULL	NULL	-	no_errors
MPL	4352	genome.wustl.edu	36	1	43576486	43576486	+	Missense_Mutation	SNP	C	C	T	rs61754776	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	1	43576486	43576486	C	T	SNP	MPL	NM_005373	human	genbank	54_36p	+1	reviewed	missense	c.209	p.P70L	0.968	superfamily_Fibronectin type III,HMMPfam_EpoR_lig-bind	superfamily_Fibronectin type III,HMMPfam_EpoR_lig-bind,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_HEMATOPO_REC_L_F1	-	no_errors
SPTBN4	57731	genome.wustl.edu	36	19	45695317	45695317	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	19	45695317	45695317	G	T	SNP	SPTBN4	NM_020971	human	genbank	54_36p	+1	reviewed	missense	c.750	p.Q250H	1.000	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
RAD54L	8438	genome.wustl.edu	36	1	46505782	46505782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	1	46505782	46505782	G	A	SNP	RAD54L	NM_003579	human	genbank	54_36p	+1	reviewed	missense	c.956	p.R319Q	1.000	HMMSmart_DEXDc,superfamily_SSF52540,HMMPfam_SNF2_N	HMMSmart_DEXDc,superfamily_SSF52540,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors
CYP4A22	284541	genome.wustl.edu	36	1	47375886	47375886	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	1	47375886	47375886	C	T	SNP	CYP4A22	NM_001010969	human	genbank	54_36p	+1	reviewed	missense	c.142	p.L48F	0.000	NULL	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
FAM21B	55747	genome.wustl.edu	36	10	47455544	47455544	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	10	47455544	47455544	A	G	SNP	FAM21B	NM_018232	human	genbank	54_36p	+1	validated	silent	c.2082	p.L694	0.997	NULL	NULL	-	no_errors
PSG5	5673	genome.wustl.edu	36	19	48371241	48371241	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	19	48371241	48371241	C	T	SNP	PSG5	NM_002781	human	genbank	54_36p	-1	validated	silent	c.930	p.K310	0.000	superfamily_SSF48726	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2	-	no_errors
FOSB	2354	genome.wustl.edu	36	19	50668066	50668066	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	19	50668066	50668066	C	A	SNP	FOSB	NM_006732	human	genbank	54_36p	+1	reviewed	missense	c.973	p.Q325K	1.000	NULL	PatternScan_SUBTILASE_SER,HMMSmart_SM00338,HMMPfam_bZIP_2,PatternScan_BZIP_BASIC	-	no_errors
IQSEC2	23096	genome.wustl.edu	36	X	53285194	53285194	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	X	53285194	53285194	T	C	SNP	IQSEC2	NM_015075	human	genbank	54_36p	-1	validated	missense	c.2408	p.K803R	1.000	superfamily_SSF50729,HMMSmart_PH	superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,superfamily_SSF50729,HMMSmart_PH	-	no_errors
LOC729789	729789	genome.wustl.edu	36	3	54635560	54635560	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	3	54635560	54635560	G	T	SNP	LOC729789	XM_001134147	human	genbank	54_36p	+1	model	silent	c.279	p.V93	1.000	HMMPfam_Ribosomal_S19,superfamily_Ribosomal protein S19	HMMPfam_Ribosomal_S19,superfamily_Ribosomal protein S19,PatternScan_RIBOSOMAL_S19	-	pseudogene
KLK1	3816	genome.wustl.edu	36	19	56014350	56014350	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	19	56014350	56014350	G	A	SNP	KLK1	NM_002257	human	genbank	54_36p	-1	reviewed	missense	c.701	p.P234L	0.034	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
CNOT1	23019	genome.wustl.edu	36	16	57146656	57146656	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	16	57146656	57146656	C	G	SNP	CNOT1	NM_016284	human	genbank	54_36p	-1	validated	missense	c.2891	p.R964T	1.000	NULL	HMMPfam_Not1,PatternScan_LECTIN_LEGUME_BETA	-	no_errors
TCN1	6947	genome.wustl.edu	36	11	59383302	59383302	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	11	59383302	59383302	C	T	SNP	TCN1	NM_001062	human	genbank	54_36p	-1	reviewed	missense	c.571	p.A191T	0.800	HMMPfam_Cobalamin_bind,PatternScan_COBALAMIN_BINDING	HMMPfam_Cobalamin_bind,PatternScan_ABC_TRANSPORTER_1,PatternScan_COBALAMIN_BINDING	-	no_errors
MS4A8B	83661	genome.wustl.edu	36	11	60227464	60227464	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	11	60227464	60227464	T	G	SNP	MS4A8B	NM_031457	human	genbank	54_36p	+1	reviewed	missense	c.257	p.L86R	0.583	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
CHD7	55636	genome.wustl.edu	36	8	61876690	61876690	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	8	61876690	61876690	G	A	SNP	CHD7	NM_017780	human	genbank	54_36p	+1	reviewed	missense	c.2426	p.R809H	1.000	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors
ZNF772	400720	genome.wustl.edu	36	19	62680462	62680462	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	19	62680462	62680462	C	T	SNP	ZNF772	NM_001024596	human	genbank	54_36p	-1	validated	missense	c.28	p.A10T	0.418	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
SLC22A9	114571	genome.wustl.edu	36	11	62894480	62894480	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	11	62894480	62894480	T	A	SNP	SLC22A9	NM_080866	human	genbank	54_36p	+1	validated	missense	c.376	p.S126T	0.000	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors
SYNE2	23224	genome.wustl.edu	36	14	63759744	63759744	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	14	63759744	63759744	G	A	SNP	SYNE2	NM_182914	human	genbank	54_36p	+1	validated	missense	c.20275	p.G6759R	0.582	superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH	-	no_errors
TET1	80312	genome.wustl.edu	36	10	70112643	70112643	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	10	70112643	70112643	G	A	SNP	TET1	NM_030625	human	genbank	54_36p	+1	validated	silent	c.4959	p.K1653	1.000	NULL	HMMPfam_zf-CXXC	-	no_errors
HKDC1	80201	genome.wustl.edu	36	10	70696387	70696387	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	10	70696387	70696387	G	A	SNP	HKDC1	NM_025130	human	genbank	54_36p	+1	validated	silent	c.2622	p.L874	0.993	HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain	HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES	-	no_errors
IQGAP2	10788	genome.wustl.edu	36	5	76034160	76034160	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	5	76034160	76034160	C	G	SNP	IQGAP2	NM_006633	human	genbank	54_36p	+1	validated	missense	c.4603	p.L1535V	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,PatternScan_WW_DOMAIN_1,HMMSmart_SM00015,HMMPfam_IQ,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_GTPase activation domain GAP,HMMSmart_SM00323,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMPfam_RasGAP_C	-	no_errors
CPSF2	53981	genome.wustl.edu	36	14	91670436	91670436	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	14	91670436	91670436	G	A	SNP	CPSF2	NM_017437	human	genbank	54_36p	+1	validated	silent	c.399	p.Q133	1.000	superfamily_Metallo-hydrolase/oxidoreductase	superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_Lactamase_B,HMMPfam_RMMBL	-	no_errors
TM9SF2	9375	genome.wustl.edu	36	13	98979838	98979838	+	Silent	SNP	T	T	C	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	13	98979838	98979838	T	C	SNP	TM9SF2	NM_004800	human	genbank	54_36p	+1	provisional	silent	c.450	p.Y150	1.000	HMMPfam_EMP70	HMMPfam_EMP70	-	no_errors
ZIC5	85416	genome.wustl.edu	36	13	99415733	99415733	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	13	99415733	99415733	C	T	SNP	ZIC5	NM_033132	human	genbank	54_36p	-1	validated	missense	c.1891	p.A631T	1.000	NULL	HMMSmart_SM00355,HMMPfam_zf-C2H2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF3	7551	genome.wustl.edu	36	7	99507488	99507488	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	7	99507488	99507488	G	A	SNP	ZNF3	NM_032924	human	genbank	54_36p	-1	validated	silent	c.555	p.S185	0.008	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
RNF19A	25897	genome.wustl.edu	36	8	101369323	101369323	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	8	101369323	101369323	C	A	SNP	RNF19A	NM_015435	human	genbank	54_36p	-1	reviewed	missense	c.256	p.G86C	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,HMMPfam_IBR,HMMSmart_SM00647	-	no_errors
SUFU	51684	genome.wustl.edu	36	10	104349285	104349285	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	10	104349285	104349285	G	C	SNP	SUFU	NM_016169	human	genbank	54_36p	+1	provisional	missense	c.1016	p.R339P	1.000	HMMPfam_SUFU	superfamily_Suppressor of Fused N-terminal domain,HMMPfam_SUFU	-	no_errors
CD2	914	genome.wustl.edu	36	1	117112884	117112884	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	1	117112884	117112884	C	T	SNP	CD2	NM_001767	human	genbank	54_36p	+1	validated	missense	c.1012	p.P338S	0.083	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMPfam_C2-set	-	no_errors
MLL	4297	genome.wustl.edu	36	11	117850211	117850211	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	11	117850211	117850211	C	G	SNP	MLL	NM_005933	human	genbank	54_36p	+1	validated	missense	c.3127	p.L1043V	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,PatternScan_RECR,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_FYRN,HMMSmart_SM00541,PatternScan_EF_HAND_1,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors
COL14A1	7373	genome.wustl.edu	36	8	121329064	121329064	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	8	121329064	121329064	G	A	SNP	COL14A1	NM_021110	human	genbank	54_36p	+1	validated	silent	c.2511	p.V837	0.842	HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors
PTPRZ1	5803	genome.wustl.edu	36	7	121425215	121425215	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	7	121425215	121425215	C	A	SNP	PTPRZ1	NM_002851	human	genbank	54_36p	+1	reviewed	missense	c.1159	p.Q387K	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
GLI2	2736	genome.wustl.edu	36	2	121464265	121464265	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	2	121464265	121464265	C	T	SNP	GLI2	NM_005270	human	genbank	54_36p	+1	reviewed	silent	c.4305	p.D1435	0.049	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
SNCAIP	9627	genome.wustl.edu	36	5	121787067	121787067	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	5	121787067	121787067	G	T	SNP	SNCAIP	NM_005460	human	genbank	54_36p	+1	reviewed	missense	c.736	p.G246C	0.851	NULL	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-	no_errors
KIAA1109	84162	genome.wustl.edu	36	4	123427270	123427270	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	4	123427270	123427270	G	C	SNP	KIAA1109	NM_015312	human	genbank	54_36p	+1	validated	missense	c.9162	p.M3054I	1.000	NULL	PatternScan_ASP_PROTEASE,HMMPfam_FSA_C	-	no_errors
TNPO3	23534	genome.wustl.edu	36	7	128406340	128406340	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	7	128406340	128406340	C	A	SNP	TNPO3	NM_012470	human	genbank	54_36p	-1	validated	missense	c.1994	p.C665F	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_Xpo1	-	no_errors
GARNL3	84253	genome.wustl.edu	36	9	129195313	129195313	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	9	129195313	129195313	C	G	SNP	GARNL3	NM_032293	human	genbank	54_36p	+1	validated	missense	c.2947	p.L983V	0.995	NULL	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors
RAPGEF6	51735	genome.wustl.edu	36	5	130792696	130792696	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	5	130792696	130792696	G	C	SNP	RAPGEF6	NM_016340	human	genbank	54_36p	-1	provisional	missense	c.4578	p.H1526Q	1.000	NULL	superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_RA,HMMSmart_SM00314,HMMSmart_SM00147,HMMPfam_RasGEF	-	no_errors
ADCY8	114	genome.wustl.edu	36	8	131928921	131928921	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	8	131928921	131928921	C	G	SNP	ADCY8	NM_001115	human	genbank	54_36p	-1	reviewed	missense	c.2433	p.K811N	1.000	NULL	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors
PCDHGA12	26025	genome.wustl.edu	36	5	140792145	140792145	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	5	140792145	140792145	C	A	SNP	PCDHGA12	NM_003735	human	genbank	54_36p	+1	reviewed	missense	c.1635	p.N545K	0.372	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
CYP11B1	1584	genome.wustl.edu	36	8	143957477	143957477	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	8	143957477	143957477	C	T	SNP	CYP11B1	NM_000497	human	genbank	54_36p	-1	reviewed	missense	c.368	p.R123H	0.023	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
ADAMTSL4	54507	genome.wustl.edu	36	1	148792551	148792551	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	1	148792551	148792551	C	G	SNP	ADAMTSL4	NM_019032	human	genbank	54_36p	+1	reviewed	missense	c.460	p.P154A	1.000	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC	-	no_errors
SYNE1	23345	genome.wustl.edu	36	6	152699823	152699823	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	6	152699823	152699823	G	T	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	missense	c.12374	p.A4125D	0.255	superfamily_Spectrin repeat	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH	-	no_errors
SYNE1	23345	genome.wustl.edu	36	6	152818843	152818843	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	6	152818843	152818843	C	T	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	silent	c.2598	p.K866	1.000	superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
UBE3C	9690	genome.wustl.edu	36	7	156664237	156664237	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	7	156664237	156664237	T	G	SNP	UBE3C	NM_014671	human	genbank	54_36p	+1	validated	missense	c.551	p.V184G	1.000	NULL	HMMSmart_SM00015,HMMPfam_IQ,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
ADAMTS4	9507	genome.wustl.edu	36	1	159431985	159431985	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	1	159431985	159431985	G	C	SNP	ADAMTS4	NM_005099	human	genbank	54_36p	-1	reviewed	missense	c.1155	p.S385R	0.977	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
IGF2R	3482	genome.wustl.edu	36	6	160374056	160374056	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	6	160374056	160374056	G	T	SNP	IGF2R	NM_000876	human	genbank	54_36p	+1	reviewed	missense	c.1138	p.A380S	0.007	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain	superfamily_Mannose 6-phosphate receptor domain,HMMPfam_CIMR,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1	-	no_errors
LOC646891	646891	genome.wustl.edu	36	1	173280727	173280727	+	RNA	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	1	173280727	173280727	C	T	SNP	LOC646891	XR_017348	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
HOXD10	3236	genome.wustl.edu	36	2	176690465	176690465	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	2	176690465	176690465	G	C	SNP	HOXD10	NM_002148	human	genbank	54_36p	+1	reviewed	missense	c.658	p.E220Q	1.000	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179113215	179113215	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	2	179113215	179113215	C	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.85867	p.V28623L	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
FLT4	2324	genome.wustl.edu	36	5	179962859	179962859	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	5	179962859	179962859	C	T	SNP	FLT4	NM_182925	human	genbank	54_36p	-1	reviewed	missense	c.4031	p.S1344N	0.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_V-set,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
FAM5C	339479	genome.wustl.edu	36	1	188334586	188334586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	1	188334586	188334586	C	T	SNP	FAM5C	NM_199051	human	genbank	54_36p	-1	provisional	missense	c.1486	p.E496K	1.000	NULL	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors
PIGX	54965	genome.wustl.edu	36	3	197939194	197939194	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	3	197939194	197939194	G	A	SNP	PIGX	NM_017861	human	genbank	54_36p	+1	validated	missense	c.199	p.V67M	0.870	HMMPfam_PIG-X,HMMSmart_PIG-X	HMMPfam_PIG-X,HMMSmart_PIG-X	-	no_errors
DSTYK	25778	genome.wustl.edu	36	1	203423171	203423171	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	1	203423171	203423171	G	T	SNP	DSTYK	NM_015375	human	genbank	54_36p	-1	reviewed	missense	c.652	p.Q218K	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
RAPH1	65059	genome.wustl.edu	36	2	204011148	204011148	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	2	204011148	204011148	G	T	SNP	RAPH1	ENST00000355146	human	ensembl	54_36p	-1	known	missense	c.368	p.T123N	0.000	NULL	NULL	-	no_errors
ABCA12	26154	genome.wustl.edu	36	2	215531372	215531372	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	2	215531372	215531372	G	A	SNP	ABCA12	NM_173076	human	genbank	54_36p	-1	reviewed	silent	c.5991	p.Y1997	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
SPEG	10290	genome.wustl.edu	36	2	220062535	220062535	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	2	220062535	220062535	G	C	SNP	SPEG	NM_005876	human	genbank	54_36p	+1	validated	missense	c.8551	p.G2851R	0.743	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00219	-	no_errors
PPPDE1	51029	genome.wustl.edu	36	1	242935647	242935647	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	1	242935647	242935647	C	G	SNP	PPPDE1	NM_016076	human	genbank	54_36p	+1	validated	missense	c.518	p.A173G	0.953	NULL	HMMPfam_DUF862	-	no_errors
ADAMTS6	11174	genome.wustl.edu	36	5	64504438	64504441	+	Frame_Shift_Del	DEL	AGCG	AGCG	-	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	AGCG	AGCG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	5	64504438	64504441	AGCG	-	DEL	ADAMTS6	NM_197941	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.3064_3061	p.R1021fs	1.000:1.000:1.000:1.000	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	(deletion:cds_exon[64504415,64504591])	no_errors
LOC346329	346329	genome.wustl.edu	36	7	65608387	65608398	+	RNA	DEL	ATGGCGGTGAAA	ATGGCGGTGAAA	-	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	ATGGCGGTGAAA	ATGGCGGTGAAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	7	65608387	65608398	ATGGCGGTGAAA	-	DEL	LOC346329	XR_016257	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.940:0.971:0.981:0.934:0.816:0.794:0.852:0.962:1.000:1.000:1.000:1.000	-	-	(deletion:rna[65607282,65608645])	pseudogene
ARHGEF17	9828	genome.wustl.edu	36	11	72698023	72698024	+	In_Frame_Ins	INS	-	-	CTC	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	11	72698023	72698024	-	CTC	INS	ARHGEF17	NM_014786	human	genbank	54_36p	+1	validated	in_frame_ins	c.692_693	p.235in_frame_insS	0.944:0.961	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	-	no_errors
C9orf95	54981	genome.wustl.edu	36	9	76882303	76882314	+	In_Frame_Del	DEL	CACTGTTTGTCA	CACTGTTTGTCA	-	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	CACTGTTTGTCA	CACTGTTTGTCA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	9	76882303	76882314	CACTGTTTGTCA	-	DEL	C9orf95	NM_017881	human	genbank	54_36p	-1	validated	in_frame_del	c.43_32	p.VTNS11in_frame_del	1.000:0.995:1.000:1.000:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	(deletion:cds_exon[76882226,76882316])	no_errors
CNR1	1268	genome.wustl.edu	36	6	88911628	88911651	+	In_Frame_Del	DEL	GAATGTCATTTGAGCCCACGTACA	GAATGTCATTTGAGCCCACGTACA	-	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	GAATGTCATTTGAGCCCACGTACA	GAATGTCATTTGAGCCCACGTACA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	6	88911628	88911651	GAATGTCATTTGAGCCCACGTACA	-	DEL	CNR1	NM_016083	human	genbank	54_36p	-1	reviewed	in_frame_del	c.85_62	p.LYVGSNDI21in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:0.827:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[88910294,88911712])	no_errors
PTEN	5728	genome.wustl.edu	36	10	89701990	89702014	+	Frame_Shift_Del	DEL	ACTTGCAGTAAGTGCTTGAAATTCT	ACTTGCAGTAAGTGCTTGAAATTCT	-	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	ACTTGCAGTAAGTGCTTGAAATTCT	ACTTGCAGTAAGTGCTTGAAATTCT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	10	89701990	89702014	ACTTGCAGTAAGTGCTTGAAATTCT	-	DEL	PTEN	NM_000314	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.628_634	p.T210fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	(deletion:cds_exon[89701855,89701996], intron[89701997,89707589])	no_errors
ACAD11	84129	genome.wustl.edu	36	3	133841056	133841072	+	Frame_Shift_Del	DEL	TCTGAAATCTCCATGAA	TCTGAAATCTCCATGAA	-	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	TCTGAAATCTCCATGAA	TCTGAAATCTCCATGAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	3	133841056	133841072	TCTGAAATCTCCATGAA	-	DEL	ACAD11	NM_032169	human	genbank	54_36p	-1	validated	frame_shift_del	c.672_656	p.I219fs	0.987:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_APH,PatternScan_PROTEIN_KINASE_TYR	superfamily_Protein kinase-like (PK-like),HMMPfam_APH,PatternScan_PROTEIN_KINASE_TYR,superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like	(deletion:cds_exon[133841026,133841190])	no_errors
TTN	7273	genome.wustl.edu	36	2	179203975	179204007	+	Splice_Site	DEL	TCAAGAGTGAAACTCATGGAAATTTCCTTACCC	TCAAGAGTGAAACTCATGGAAATTTCCTTACCC	-	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	TCAAGAGTGAAACTCATGGAAATTTCCTTACCC	TCAAGAGTGAAACTCATGGAAATTTCCTTACCC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	2	179203975	179204007	TCAAGAGTGAAACTCATGGAAATTTCCTTACCC	-	DEL	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	splice_site_del	c.31960+3_31960+1	e146-1	0.036:0.040:0.016:0.027:0.024:0.000:0.000:0.000:0.001:0.002:0.004:0.024:0.001:0.002:0.002:0.000:0.000:0.011:0.020:0.016:0.008:0.004:0.002:0.001:0.031:0.404:0.835:0.975:0.988:1.000:1.000:1.000:0.997	-	-	(deletion:intron[179203916,179204005], cds_exon[179204006,179204272])	no_errors
WDR64	128025	genome.wustl.edu	36	1	239971560	239971570	+	Frame_Shift_Del	DEL	CTCACTATCTG	CTCACTATCTG	-	novel	unknown	TCGA-61-1737-01A-01W-0639-09	TCGA-61-1737-11A-01W-0639-09	CTCACTATCTG	CTCACTATCTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	ff9dd6f8-0030-455e-bca8-f3090615c39c	d0dbbf30-9f8d-4e13-9481-df5b5826af8c	1	239971560	239971570	CTCACTATCTG	-	DEL	WDR64	NM_144625	human	genbank	54_36p	+1	validated	frame_shift_del	c.571_581	p.T192fs	0.993:0.994:0.987:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	(deletion:cds_exon[239971441,239971589])	no_errors
