Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ENSG00000211459	0	genome.wustl.edu	36	MT	764	764	+	RNA	SNP	G	A	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	MT	764	764	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
MT-ND4	4538	genome.wustl.edu	36	MT	10972	10972	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	MT	10972	10972	G	A	SNP	MT-ND4	ENST00000361381	human	ensembl	54_36p	+1	known	nonsense	c.212	p.W71*	NULL	HMMPfam_Oxidored_q5_N	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region
SGSM2	9905	genome.wustl.edu	36	17	2223506	2223506	+	Silent	SNP	C	T	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	17	2223506	2223506	C	T	SNP	SGSM2	NM_014853	human	genbank	54_36p	+1	validated	silent	c.2049	p.I683	0.967	superfamily_RabGAP_TBC,HMMSmart_TBC	HMMPfam_RUN,HMMSmart_RUN,superfamily_RabGAP_TBC,HMMSmart_TBC,HMMPfam_TBC	-	no_errors
P2RX1	5023	genome.wustl.edu	36	17	3754036	3754036	+	Silent	SNP	G	A	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	17	3754036	3754036	G	A	SNP	P2RX1	NM_002558	human	genbank	54_36p	-1	reviewed	silent	c.459	p.N153	0.036	HMMPfam_P2X_receptor	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	A	A	rs28934574	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	17	7517819	7517819	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.844	p.R282W	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
PPP1R3B	79660	genome.wustl.edu	36	8	9035844	9035844	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	8	9035844	9035844	A	T	SNP	PPP1R3B	NM_024607	human	genbank	54_36p	-1	validated	missense	c.728	p.M243K	0.000	NULL	HMMPfam_CBM_21	-	no_errors
ADAM17	6868	genome.wustl.edu	36	2	9578889	9578889	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	2	9578889	9578889	A	C	SNP	ADAM17	NM_003183	human	genbank	54_36p	-1	reviewed	missense	c.851	p.I284S	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)"	-	no_errors
LOC646090	646090	genome.wustl.edu	36	15	18694046	18694046	+	RNA	SNP	T	T	G	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	15	18694046	18694046	T	G	SNP	LOC646090	XR_017120	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.988	-	-	-	pseudogene
uc003jgf.2	0	genome.wustl.edu	36	5	21495557	21495557	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	5	21495557	21495557	C	T	SNP	uc003jgf.2	ENST00000399751	human	ensembl	54_36p	+1	known	silent	c.39	p.D13	0.299	NULL	NULL	-	no_errors
HR	55806	genome.wustl.edu	36	8	22032456	22032456	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	8	22032456	22032456	G	C	SNP	HR	NM_005144	human	genbank	54_36p	-1	reviewed	missense	c.3165	p.H1055Q	0.997	HMMSmart_SM00558	HMMSmart_SM00558,HMMPfam_JmjC	-	no_errors
ENSG00000215548	0	genome.wustl.edu	36	20	28226044	28226044	+	Silent	SNP	C	C	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	20	28226044	28226044	C	A	SNP	ENSG00000215548	ENST00000358464	human	ensembl	54_36p	+1	known	silent	c.153	p.L51	0.078	NULL	NULL	-	no_stop_codon
LOC647224	0	genome.wustl.edu	36	16	33648327	33648327	+	RNA	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	16	33648327	33648327	C	T	SNP	LOC647224	XR_037918	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
BRPF3	27154	genome.wustl.edu	36	6	36276847	36276847	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	6	36276847	36276847	G	A	SNP	BRPF3	NM_015695	human	genbank	54_36p	+1	validated	missense	c.770	p.R257H	1.000	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	HMMPfam_EPL1,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1,superfamily_SSF63748,HMMPfam_PWWP,HMMSmart_PWWP	-	no_errors
N4BP2	55728	genome.wustl.edu	36	4	39780683	39780683	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	4	39780683	39780683	G	A	SNP	N4BP2	NM_018177	human	genbank	54_36p	+1	reviewed	missense	c.823	p.V275I	0.000	NULL	superfamily_UBA-like,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_DUF1771,HMMSmart_SM00463,HMMPfam_Smr	-	no_errors
C21orf29	54084	genome.wustl.edu	36	21	44812270	44812270	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	21	44812270	44812270	C	A	SNP	C21orf29	NM_144991	human	genbank	54_36p	-1	provisional	missense	c.130	p.A44S	0.000	NULL	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP	-	no_errors
FCGBP	8857	genome.wustl.edu	36	19	45113020	45113020	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	19	45113020	45113020	C	G	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	missense	c.2741	p.S914T	0.928	HMMSmart_VWD,HMMPfam_VWD	HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC	-	no_errors
CELSR1	9620	genome.wustl.edu	36	22	45151652	45151652	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	22	45151652	45151652	G	T	SNP	CELSR1	NM_014246	human	genbank	54_36p	-1	reviewed	missense	c.7554	p.F2518L	0.995	HMMPfam_7tm_2	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
LRP4	4038	genome.wustl.edu	36	11	46853945	46853945	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	11	46853945	46853945	C	T	SNP	LRP4	NM_002334	human	genbank	54_36p	-1	validated	missense	c.3685	p.D1229N	1.000	superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	no_errors
GALK2	2585	genome.wustl.edu	36	15	47399146	47399146	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	15	47399146	47399146	C	T	SNP	GALK2	NM_002044	human	genbank	54_36p	+1	reviewed	nonsense	c.1021	p.R341*	0.760	superfamily_SSF55060	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_GalKase_gal_bdg,PatternScan_GALACTOKINASE,HMMPfam_GHMP_kinases_N,PatternScan_GHMP_KINASES_ATP,superfamily_SSF55060,HMMPfam_GHMP_kinases_C	-	no_errors
SCN8A	6334	genome.wustl.edu	36	12	50379638	50379638	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	12	50379638	50379638	G	A	SNP	SCN8A	NM_014191	human	genbank	54_36p	+1	validated	missense	c.724	p.G242S	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_ODR_DC_2_1,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors
KRT76	51350	genome.wustl.edu	36	12	51456884	51456884	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	12	51456884	51456884	C	T	SNP	KRT76	NM_015848	human	genbank	54_36p	-1	validated	silent	c.459	p.G153	0.281	NULL	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
GRLF1	2909	genome.wustl.edu	36	19	52114874	52114874	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	19	52114874	52114874	A	T	SNP	GRLF1	NM_004491	human	genbank	54_36p	+1	reviewed	nonsense	c.1102	p.K368*	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
ARL15	54622	genome.wustl.edu	36	5	53642065	53642065	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	5	53642065	53642065	A	T	SNP	ARL15	NM_019087	human	genbank	54_36p	-1	validated	missense	c.2	p.M1K	1.000	NULL	HMMPfam_Arf,superfamily_SSF52540	-	no_errors
MAP3K1	4214	genome.wustl.edu	36	5	56212335	56212335	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	5	56212335	56212335	T	C	SNP	MAP3K1	NM_005921	human	genbank	54_36p	+1	validated	missense	c.2128	p.C710R	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
SMTNL1	219537	genome.wustl.edu	36	11	57074118	57074118	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	11	57074118	57074118	G	A	SNP	SMTNL1	NM_001105565	human	genbank	54_36p	+1	provisional	missense	c.1496	p.R499H	1.000	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain	-	no_errors
FTSJ3	117246	genome.wustl.edu	36	17	59251037	59251037	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	17	59251037	59251037	C	T	SNP	FTSJ3	NM_017647	human	genbank	54_36p	-1	reviewed	missense	c.2401	p.V801I	1.000	HMMPfam_Spb1_C	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_FtsJ,HMMPfam_Spb1_C	-	no_errors
CDH7	1005	genome.wustl.edu	36	18	61681033	61681033	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	18	61681033	61681033	C	T	SNP	CDH7	NM_004361	human	genbank	54_36p	+1	reviewed	silent	c.1764	p.D588	0.999	superfamily_Cadherin-like,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
PLCB3	5331	genome.wustl.edu	36	11	63788103	63788103	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	11	63788103	63788103	C	T	SNP	PLCB3	NM_000932	human	genbank	54_36p	+1	provisional	silent	c.2595	p.H865	0.997	NULL	superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_PLC-beta_C	-	no_errors
HYDIN	54768	genome.wustl.edu	36	16	69452189	69452189	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	16	69452189	69452189	C	T	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.11891	p.R3964H	0.965	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PTGR2	145482	genome.wustl.edu	36	14	73413576	73413576	+	Silent	SNP	A	A	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	14	73413576	73413576	A	T	SNP	PTGR2	NM_152444	human	genbank	54_36p	+1	provisional	silent	c.471	p.T157	0.967	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N	superfamily_GroES-like,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N	-	no_errors
MTHFD2	10797	genome.wustl.edu	36	2	74286398	74286398	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	2	74286398	74286398	C	T	SNP	MTHFD2	NM_006636	human	genbank	54_36p	+1	reviewed	missense	c.160	p.R54W	1.000	superfamily_SSF53223,HMMPfam_THF_DHG_CYH	superfamily_SSF53223,HMMPfam_THF_DHG_CYH,PatternScan_THF_DHG_CYH_1,superfamily_NAD(P)-bd,HMMPfam_THF_DHG_CYH_C,PatternScan_THF_DHG_CYH_2	-	no_errors
LOC100129795	0	genome.wustl.edu	36	11	74467955	74467955	+	RNA	SNP	G	G	C	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	11	74467955	74467955	G	C	SNP	LOC100129795	XR_037716	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.992	-	-	-	pseudogene
PQLC1	80148	genome.wustl.edu	36	18	75780237	75780237	+	Silent	SNP	G	A	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	18	75780237	75780237	G	A	SNP	PQLC1	NM_025078	human	genbank	54_36p	-1	provisional	silent	c.543	p.T181	0.998	HMMPfam_PQ-loop	HMMPfam_PQ-loop,HMMSmart_SM00679	-	no_errors
PRSS35	167681	genome.wustl.edu	36	6	84290531	84290531	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	6	84290531	84290531	G	T	SNP	PRSS35	NM_153362	human	genbank	54_36p	+1	provisional	missense	c.652	p.G218C	0.006	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc	PatternScan_TRYPSIN_SER,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS	-	no_errors
NAALAD2	10003	genome.wustl.edu	36	11	89554504	89554504	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	11	89554504	89554504	G	A	SNP	NAALAD2	NM_005467	human	genbank	54_36p	+1	reviewed	missense	c.1927	p.V643I	0.936	superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer	superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M28,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer	-	no_errors
DPYD	1806	genome.wustl.edu	36	1	97937689	97937689	+	Silent	SNP	T	T	C	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	1	97937689	97937689	T	C	SNP	DPYD	NM_000110	human	genbank	54_36p	-1	reviewed	silent	c.486	p.V162	0.799	superfamily_Helical_ferredxn	superfamily_Helical_ferredxn,superfamily_SSF51971,HMMPfam_Pyr_redox_2,superfamily_SSF51395,HMMPfam_DHO_dh,superfamily_SSF54862,HMMPfam_Fer4,PatternScan_4FE4S_FER_1	-	no_errors
STAG3	10734	genome.wustl.edu	36	7	99640659	99640659	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	7	99640659	99640659	C	T	SNP	STAG3	NM_012447	human	genbank	54_36p	+1	validated	missense	c.3047	p.S1016F	0.998	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_STAG	-	no_errors
MUC17	140453	genome.wustl.edu	36	7	100466000	100466000	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	7	100466000	100466000	G	C	SNP	MUC17	NM_001040105	human	genbank	54_36p	+1	provisional	missense	c.4583	p.S1528T	0.001	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
UBR5	51366	genome.wustl.edu	36	8	103340431	103340431	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	8	103340431	103340431	C	T	SNP	UBR5	NM_015902	human	genbank	54_36p	-1	reviewed	missense	c.8059	p.V2687M	1.000	superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1,superfamily_HECT,superfamily_PABP_HYD,HMMPfam_PABP,HMMSmart_PolyA,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
NCK2	8440	genome.wustl.edu	36	2	105838035	105838035	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	2	105838035	105838035	G	T	SNP	NCK2	NM_001004720	human	genbank	54_36p	+1	reviewed	silent	c.84	p.R28	0.710	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	-	no_errors
SORCS1	114815	genome.wustl.edu	36	10	108429437	108429437	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	10	108429437	108429437	A	T	SNP	SORCS1	NM_001013031	human	genbank	54_36p	-1	reviewed	missense	c.1606	p.Y536N	1.000	superfamily_SSF110296,HMMSmart_VPS10	superfamily_SSF110296,HMMSmart_VPS10,HMMSmart_PKD,superfamily_PKD,HMMPfam_PKD	-	no_errors
ZNF462	58499	genome.wustl.edu	36	9	108811666	108811666	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	9	108811666	108811666	C	A	SNP	ZNF462	NM_021224	human	genbank	54_36p	+1	validated	missense	c.7209	p.D2403E	0.340	superfamily_beta-sandwich domain of Sec23/24,superfamily_C2H2 and C2HC zinc fingers	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_beta-sandwich domain of Sec23/24	-	no_errors
C4orf21	55345	genome.wustl.edu	36	4	113758970	113758970	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	4	113758970	113758970	C	T	SNP	C4orf21	NM_018392	human	genbank	54_36p	-1	predicted	nonsense	c.1677	p.W559*	0.000	NULL	HMMPfam_DUF2439	-	no_errors
ANK2	287	genome.wustl.edu	36	4	114472635	114472635	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	4	114472635	114472635	C	T	SNP	ANK2	NM_001148	human	genbank	54_36p	+1	reviewed	missense	c.3184	p.R1062C	1.000	HMMPfam_ZU5	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
CEP164	22897	genome.wustl.edu	36	11	116758773	116758773	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	11	116758773	116758773	T	A	SNP	CEP164	NM_014956	human	genbank	54_36p	+1	validated	missense	c.1629	p.H543Q	0.000	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW	-	no_errors
KPNA5	3841	genome.wustl.edu	36	6	117117234	117117234	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	6	117117234	117117234	C	T	SNP	KPNA5	NM_002269	human	genbank	54_36p	+1	reviewed	silent	c.63	p.A21	0.847	HMMPfam_IBB	HMMPfam_IBB,superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors
OASL	8638	genome.wustl.edu	36	12	119953751	119953751	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	12	119953751	119953751	G	A	SNP	OASL	NM_003733	human	genbank	54_36p	-1	validated	silent	c.534	p.I178	0.154	superfamily_Nucleotidyltransferase,HMMPfam_OAS1_C	superfamily_Nucleotidyltransferase,PatternScan_25A_SYNTH_1,HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain,PatternScan_25A_SYNTH_2,HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin	-	no_errors
CLASP1	23332	genome.wustl.edu	36	2	121932978	121932978	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	2	121932978	121932978	C	T	SNP	CLASP1	NM_015282	human	genbank	54_36p	-1	validated	missense	c.1222	p.E408K	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
HSPA5	3309	genome.wustl.edu	36	9	127038815	127038815	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	9	127038815	127038815	T	A	SNP	HSPA5	NM_005347	human	genbank	54_36p	-1	validated	missense	c.1842	p.E614D	1.000	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain	superfamily_Actin-like ATPase domain,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain	-	no_errors
AK1	203	genome.wustl.edu	36	9	129670149	129670149	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	9	129670149	129670149	C	G	SNP	AK1	NM_000476	human	genbank	54_36p	-1	reviewed	missense	c.544	p.V182L	0.998	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ADK,PatternScan_ADENYLATE_KINASE	-	no_errors
SLC23A1	9963	genome.wustl.edu	36	5	138743846	138743846	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	5	138743846	138743846	G	A	SNP	SLC23A1	NM_152685	human	genbank	54_36p	-1	reviewed	silent	c.609	p.V203	0.994	HMMPfam_Xan_ur_permease	HMMPfam_Xan_ur_permease	-	no_errors
PCDHA2	56146	genome.wustl.edu	36	5	140155043	140155043	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	5	140155043	140155043	A	T	SNP	PCDHA2	NM_018905	human	genbank	54_36p	+1	reviewed	missense	c.310	p.I104F	0.259	superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin_2	superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCDHB10	56126	genome.wustl.edu	36	5	140553852	140553852	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	5	140553852	140553852	G	A	SNP	PCDHB10	NM_018930	human	genbank	54_36p	+1	reviewed	missense	c.1543	p.A515T	0.256	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	-	no_errors
FLJ43860	389690	genome.wustl.edu	36	8	142575626	142575626	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	8	142575626	142575626	A	G	SNP	FLJ43860	NM_207414	human	genbank	54_36p	-1	validated	missense	c.238	p.F80L	0.830	NULL	superfamily_ARM repeat,HMMPfam_HEAT	-	pseudogene
KYNU	8942	genome.wustl.edu	36	2	143459141	143459141	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	2	143459141	143459141	G	C	SNP	KYNU	NM_003937	human	genbank	54_36p	+1	reviewed	missense	c.748	p.D250H	1.000	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5	-	no_errors
REPIN1	29803	genome.wustl.edu	36	7	149699757	149699757	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	7	149699757	149699757	G	A	SNP	REPIN1	NM_001099695	human	genbank	54_36p	+1	validated	missense	c.665	p.R222Q	0.013	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PLXNA3	55558	genome.wustl.edu	36	X	153345762	153345762	+	Silent	SNP	G	A	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	X	153345762	153345762	G	A	SNP	PLXNA3	NM_017514	human	genbank	54_36p	+1	validated	silent	c.1740	p.A580	0.000	NULL	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP	-	no_errors
LOC149501	149501	genome.wustl.edu	36	1	155309648	155309648	+	RNA	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	1	155309648	155309648	G	A	SNP	LOC149501	XR_017100	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.004	-	-	-	pseudogene
TULP4	56995	genome.wustl.edu	36	6	158843852	158843852	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	6	158843852	158843852	G	A	SNP	TULP4	NM_020245	human	genbank	54_36p	+1	validated	missense	c.3169	p.A1057T	0.811	NULL	HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,superfamily_TNF-like,HMMPfam_SOCS_box,superfamily_Transcriptional factor tubby C-terminal domain,HMMPfam_Tub	-	no_errors
GABRG2	2566	genome.wustl.edu	36	5	161509153	161509153	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	5	161509153	161509153	A	C	SNP	GABRG2	ENST00000393933	human	ensembl	54_36p	+1	known	missense	c.1136	p.K379T	0.000	superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_stop_codon
TTN	7273	genome.wustl.edu	36	2	179146830	179146830	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	2	179146830	179146830	G	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	nonsense	c.60218	p.S20073*	0.998	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
PIK3CA	5290	genome.wustl.edu	36	3	180399651	180399651	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	3	180399651	180399651	G	T	SNP	PIK3CA	NM_006218	human	genbank	54_36p	+1	reviewed	missense	c.344	p.R115L	1.000	superfamily_SSF54236	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
FAM171B	165215	genome.wustl.edu	36	2	187313291	187313291	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	2	187313291	187313291	G	A	SNP	FAM171B	NM_177454	human	genbank	54_36p	+1	validated	silent	c.330	p.T110	0.988	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
ENSG00000180015	0	genome.wustl.edu	36	4	189897207	189897207	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	4	189897207	189897207	G	A	SNP	ENSG00000180015	ENST00000321235	human	ensembl	54_36p	+1	known	silent	c.609	p.P203	0.996	superfamily_SSF75620,HMMPfam_RF-1	superfamily_SSF75620,HMMPfam_PCRF,HMMPfam_RF-1	-	no_start_codon
CFHR1	3078	genome.wustl.edu	36	1	195066359	195066359	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	1	195066359	195066359	G	A	SNP	CFHR1	NM_002113	human	genbank	54_36p	+1	validated	silent	c.714	p.Q238	0.680	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-	no_errors
ADIPOR1	51094	genome.wustl.edu	36	1	201177941	201177941	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	1	201177941	201177941	G	A	SNP	ADIPOR1	NM_015999	human	genbank	54_36p	-1	validated	silent	c.834	p.G278	0.959	HMMPfam_HlyIII	HMMPfam_HlyIII	-	no_errors
OBSL1	23363	genome.wustl.edu	36	2	220139853	220139853	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	2	220139853	220139853	C	T	SNP	OBSL1	NM_015311	human	genbank	54_36p	-1	provisional	missense	c.2077	p.A693T	0.923	superfamily_SSF48726	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_ig,HMMPfam_fn3,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_V-set	-	no_errors
LOC100133328	0	genome.wustl.edu	36	1	224381518	224381518	+	RNA	SNP	C	C	T	novel	unknown	TCGA-61-1738-01A-01W-0639-09	TCGA-61-1738-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22fc11f7-fd86-4de0-8e21-ff4aea4e6f83	4a03326c-ccd1-4545-b569-8c4c45e38feb	1	224381518	224381518	C	T	SNP	LOC100133328	XR_038620	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.014	-	-	-	pseudogene
