Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ZNF732	0	genome.wustl.edu	36	4	238350	238350	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	4	238350	238350	A	T	SNP	ZNF732	ENST00000356347	human	ensembl	54_36p	+1	known	missense	c.445	p.T149S	0.042	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_start_codon
ARHGEF10	9639	genome.wustl.edu	36	8	1869508	1869508	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	8	1869508	1869508	C	A	SNP	ARHGEF10	NM_014629	human	genbank	54_36p	+1	reviewed	missense	c.3215	p.A1072D	0.003	superfamily_WD40_like	superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,superfamily_WD40_like,PatternScan_THIOL_PROTEASE_HIS	-	no_errors
ABCA3	21	genome.wustl.edu	36	16	2313601	2313601	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	16	2313601	2313601	C	T	SNP	ABCA3	NM_001089	human	genbank	54_36p	-1	reviewed	nonsense	c.537	p.W179*	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
OR1A1	8383	genome.wustl.edu	36	17	3065914	3065914	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	17	3065914	3065914	A	C	SNP	OR1A1	NM_014565	human	genbank	54_36p	+1	provisional	missense	c.250	p.N84H	0.004	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
JAK2	3717	genome.wustl.edu	36	9	5116737	5116737	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	9	5116737	5116737	C	T	SNP	JAK2	NM_004972	human	genbank	54_36p	+1	reviewed	silent	c.3345	p.S1115	0.998	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
OR52E8	390079	genome.wustl.edu	36	11	5834792	5834792	+	Silent	SNP	T	T	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	5834792	5834792	T	A	SNP	OR52E8	NM_001005168	human	genbank	54_36p	-1	provisional	silent	c.717	p.R239	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
HPX	3263	genome.wustl.edu	36	11	6418482	6418482	+	Silent	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	6418482	6418482	C	G	SNP	HPX	NM_000613	human	genbank	54_36p	-1	provisional	silent	c.138	p.V46	0.002	NULL	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517867	7517867	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	17	7517867	7517867	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.796	p.G266R	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
ADCY2	108	genome.wustl.edu	36	5	7748887	7748887	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	5	7748887	7748887	G	T	SNP	ADCY2	NM_020546	human	genbank	54_36p	+1	reviewed	missense	c.892	p.G298C	1.000	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors
MTRR	4552	genome.wustl.edu	36	5	7948940	7948940	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	5	7948940	7948940	C	G	SNP	MTRR	NM_024010	human	genbank	54_36p	+1	reviewed	missense	c.1732	p.P578A	0.997	superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-	no_errors
PDE4A	5141	genome.wustl.edu	36	19	10429608	10429608	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	19	10429608	10429608	C	G	SNP	PDE4A	NM_006202	human	genbank	54_36p	+1	validated	missense	c.214	p.Q72E	0.947	NULL	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
GSPT1	2935	genome.wustl.edu	36	16	11899212	11899212	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	16	11899212	11899212	A	C	SNP	GSPT1	NM_002094	human	genbank	54_36p	-1	validated	missense	c.8	p.L3R	1.000	NULL	superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C	-	no_errors
SCIN	85477	genome.wustl.edu	36	7	12658027	12658027	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	7	12658027	12658027	G	T	SNP	SCIN	NM_033128	human	genbank	54_36p	+1	validated	nonsense	c.1255	p.E419*	1.000	superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin	superfamily_C-terminal gelsolin-like domain of Sec23/24,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins	-	no_errors
BOD1L	259282	genome.wustl.edu	36	4	13226221	13226221	+	Silent	SNP	T	T	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	4	13226221	13226221	T	C	SNP	BOD1L	NM_148894	human	genbank	54_36p	-1	validated	silent	c.372	p.S124	1.000	superfamily_SSF81995	superfamily_SSF81995,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
CLEC17A	388512	genome.wustl.edu	36	19	14566349	14566349	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	19	14566349	14566349	C	T	SNP	CLEC17A	NM_207390	human	genbank	54_36p	+1	validated	missense	c.247	p.P83S	0.516	NULL	superfamily_C-type lectin-like,HMMPfam_Lectin_C	-	no_errors
PLVAP	83483	genome.wustl.edu	36	19	17337441	17337441	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	19	17337441	17337441	A	G	SNP	PLVAP	NM_031310	human	genbank	54_36p	-1	provisional	missense	c.833	p.L278P	0.107	HMMPfam_PV-1	HMMPfam_PV-1	-	no_errors
STAM	8027	genome.wustl.edu	36	10	17787000	17787000	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	10	17787000	17787000	C	T	SNP	STAM	NM_003473	human	genbank	54_36p	+1	reviewed	silent	c.1026	p.L342	1.000	NULL	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288,HMMPfam_UIM,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
DKFZp686A1627	266695	genome.wustl.edu	36	13	18520223	18520223	+	RNA	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	13	18520223	18520223	C	G	SNP	DKFZp686A1627	NR_002801	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.972	-	-	-	pseudogene
MRGPRX1	259249	genome.wustl.edu	36	11	18912459	18912459	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	18912459	18912459	G	T	SNP	MRGPRX1	NM_147199	human	genbank	54_36p	-1	provisional	missense	c.449	p.S150Y	0.813	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
FERD3L	222894	genome.wustl.edu	36	7	19151265	19151265	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	7	19151265	19151265	G	A	SNP	FERD3L	NM_152898	human	genbank	54_36p	-1	validated	silent	c.246	p.R82	0.001	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors
MAPK1	5594	genome.wustl.edu	36	22	20490160	20490160	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	22	20490160	20490160	G	C	SNP	MAPK1	NM_002745	human	genbank	54_36p	-1	reviewed	silent	c.471	p.L157	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ZNF626	199777	genome.wustl.edu	36	19	20600249	20600249	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	19	20600249	20600249	T	C	SNP	ZNF626	NM_001076675	human	genbank	54_36p	-1	validated	missense	c.274	p.K92E	0.005	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ENSG00000180747	0	genome.wustl.edu	36	16	22399897	22399897	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	16	22399897	22399897	G	C	SNP	ENSG00000180747	ENST00000327173	human	ensembl	54_36p	+1	known	missense	c.722	p.C241S	1.000	NULL	NULL	-	no_start_codon
NOS2	4843	genome.wustl.edu	36	17	23116844	23116844	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	17	23116844	23116844	A	G	SNP	NOS2	NM_000625	human	genbank	54_36p	-1	reviewed	missense	c.2272	p.S758P	0.874	superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1	superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-	no_errors
LUZP1	7798	genome.wustl.edu	36	1	23290768	23290768	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	23290768	23290768	C	T	SNP	LUZP1	NM_033631	human	genbank	54_36p	-1	reviewed	silent	c.2574	p.A858	0.143	NULL	HMMPfam_CortBP2	-	no_errors
COG7	91949	genome.wustl.edu	36	16	23343608	23343608	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	16	23343608	23343608	G	A	SNP	COG7	NM_153603	human	genbank	54_36p	-1	validated	silent	c.972	p.F324	0.984	HMMPfam_COG7	HMMPfam_COG7	-	no_errors
PARP4	143	genome.wustl.edu	36	13	23924706	23924706	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	13	23924706	23924706	G	C	SNP	PARP4	NM_006437	human	genbank	54_36p	-1	reviewed	missense	c.2852	p.T951R	1.000	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	HMMPfam_BRCT,superfamily_BRCT,HMMSmart_BRCT,superfamily_PARP_reg,HMMPfam_PARP,superfamily_SSF56399,HMMSmart_VIT,HMMPfam_VIT,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	-	no_errors
SUPT6H	6830	genome.wustl.edu	36	17	24033108	24033108	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	17	24033108	24033108	G	C	SNP	SUPT6H	NM_003170	human	genbank	54_36p	+1	validated	missense	c.1580	p.C527S	1.000	NULL	HMMPfam_Tex_N,HMMSmart_SM00732,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00316,HMMPfam_S1,superfamily_SH2 domain,HMMSmart_SM00252	-	no_errors
PFN4	375189	genome.wustl.edu	36	2	24198801	24198801	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	24198801	24198801	C	T	SNP	PFN4	NM_199346	human	genbank	54_36p	-1	provisional	missense	c.109	p.G37S	0.995	superfamily_Profilin (actin-binding protein),HMMPfam_Profilin,HMMSmart_SM00392	superfamily_Profilin (actin-binding protein),HMMPfam_Profilin,HMMSmart_SM00392	-	no_errors
POLA1	5422	genome.wustl.edu	36	X	24740798	24740798	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	X	24740798	24740798	G	T	SNP	POLA1	NM_016937	human	genbank	54_36p	+1	validated	missense	c.3175	p.V1059F	1.000	superfamily_SSF56672,HMMPfam_DNA_pol_B	superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_SSF56672,HMMPfam_DNA_pol_B,PatternScan_DNA_POLYMERASE_B,HMMPfam_zf-DNA_Pol,superfamily_SSF90234	-	no_errors
SEZ6L	23544	genome.wustl.edu	36	22	25023012	25023012	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	22	25023012	25023012	C	T	SNP	SEZ6L	NM_021115	human	genbank	54_36p	+1	validated	silent	c.1128	p.D376	0.701	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB	-	no_errors
HPS4	89781	genome.wustl.edu	36	22	25190099	25190099	+	Silent	SNP	T	T	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	22	25190099	25190099	T	C	SNP	HPS4	NM_022081	human	genbank	54_36p	-1	reviewed	silent	c.1497	p.E499	0.000	NULL	NULL	-	no_errors
NGLY1	55768	genome.wustl.edu	36	3	25752644	25752644	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	3	25752644	25752644	T	A	SNP	NGLY1	NM_018297	human	genbank	54_36p	-1	reviewed	missense	c.1004	p.D335V	1.000	HMMPfam_Transglut_core,superfamily_Cysteine proteinases,HMMSmart_SM00460	HMMPfam_PUB,HMMSmart_SM00580,HMMPfam_Transglut_core,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMSmart_SM00613,HMMPfam_DUF750	-	no_errors
HERC2	8924	genome.wustl.edu	36	15	26181876	26181876	+	Silent	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	15	26181876	26181876	C	G	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	silent	c.1905	p.G635	0.968	superfamily_RCC1/BLIP-II,HMMPfam_RCC1	superfamily_RCC1/BLIP-II,HMMPfam_RCC1,HMMSmart_SM00706,superfamily_Cytochrome b5-like heme/steroid binding domain,HMMPfam_Cyt-b5,HMMPfam_MIB_HERC2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Galactose-binding domain-like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RCC1_2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
CNKSR1	10256	genome.wustl.edu	36	1	26387912	26387912	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	26387912	26387912	C	T	SNP	CNKSR1	NM_006314	human	genbank	54_36p	+1	reviewed	silent	c.1753	p.L585	0.955	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2,HMMPfam_CRIC_ras_sig,superfamily_PDZ domain-like,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
NF1	4763	genome.wustl.edu	36	17	26677316	26677316	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	17	26677316	26677316	A	C	SNP	NF1	NM_001042492	human	genbank	54_36p	+1	reviewed	missense	c.5188	p.T1730P	1.000	HMMSmart_SM00516	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	-	no_errors
ITPR2	3709	genome.wustl.edu	36	12	26703427	26703427	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	12	26703427	26703427	G	C	SNP	ITPR2	NM_002223	human	genbank	54_36p	-1	validated	missense	c.1772	p.A591G	1.000	superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR	HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors
FAM46B	115572	genome.wustl.edu	36	1	27205759	27205759	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	27205759	27205759	A	G	SNP	FAM46B	NM_052943	human	genbank	54_36p	-1	validated	missense	c.538	p.C180R	1.000	HMMPfam_DUF1693	HMMPfam_DUF1693	-	no_errors
HIST1H2BJ	8970	genome.wustl.edu	36	6	27208176	27208176	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	6	27208176	27208176	G	C	SNP	HIST1H2BJ	NM_021058	human	genbank	54_36p	-1	reviewed	silent	c.333	p.A111	1.000	superfamily_Histone-fold,HMMSmart_SM00427,PatternScan_HISTONE_H2B	superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B	-	no_errors
C8orf80	389643	genome.wustl.edu	36	8	27936767	27936767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	8	27936767	27936767	C	T	SNP	C8orf80	NM_001010906	human	genbank	54_36p	-1	predicted	missense	c.2377	p.G793R	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
STX12	23673	genome.wustl.edu	36	1	28021420	28021420	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	28021420	28021420	C	G	SNP	STX12	NM_177424	human	genbank	54_36p	+1	validated	missense	c.824	p.T275R	0.979	NULL	HMMSmart_SM00503,superfamily_t-snare proteins,HMMPfam_Syntaxin,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN	-	no_errors
ALK	238	genome.wustl.edu	36	2	29298713	29298713	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	29298713	29298713	C	T	SNP	ALK	NM_004304	human	genbank	54_36p	-1	reviewed	splice_site	c.3515+1	e22+1	1.000	-	-	-	no_errors
GAS2L2	246176	genome.wustl.edu	36	17	31096856	31096856	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	17	31096856	31096856	G	T	SNP	GAS2L2	NM_139285	human	genbank	54_36p	-1	validated	silent	c.1773	p.P591	0.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_GAS2,HMMSmart_SM00243	-	no_errors
SNTA1	6640	genome.wustl.edu	36	20	31490467	31490467	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	20	31490467	31490467	G	C	SNP	SNTA1	NM_003098	human	genbank	54_36p	-1	reviewed	missense	c.337	p.L113V	1.000	HMMSmart_SM00233,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	HMMSmart_SM00233,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PH domain-like,HMMPfam_PH	-	no_errors
FRY	10129	genome.wustl.edu	36	13	31629426	31629426	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	13	31629426	31629426	C	T	SNP	FRY	NM_023037	human	genbank	54_36p	+1	validated	silent	c.1668	p.Y556	1.000	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors
BAG1	573	genome.wustl.edu	36	9	33251093	33251093	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	9	33251093	33251093	C	T	SNP	BAG1	NM_004323	human	genbank	54_36p	-1	reviewed	missense	c.655	p.G219R	1.000	superfamily_Ubiquitin-like,HMMSmart_SM00213,HMMPfam_ubiquitin,superfamily_BAG domain	superfamily_Ubiquitin-like,HMMSmart_SM00213,HMMPfam_ubiquitin,superfamily_BAG domain,HMMPfam_BAG,HMMSmart_SM00264	-	no_errors
CCDC49	54883	genome.wustl.edu	36	17	34224648	34224648	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	17	34224648	34224648	G	A	SNP	CCDC49	NM_017748	human	genbank	54_36p	-1	provisional	silent	c.420	p.F140	1.000	NULL	HMMPfam_Cir_N	-	no_errors
ENSG00000214581	0	genome.wustl.edu	36	16	34539084	34539084	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	16	34539084	34539084	G	T	SNP	ENSG00000214581	ENST00000398617	human	ensembl	54_36p	-1	known	missense	c.262	p.P88T	0.958	NULL	superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_stop_codon
CNTFR	1271	genome.wustl.edu	36	9	34554607	34554607	+	Silent	SNP	C	C	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	9	34554607	34554607	C	A	SNP	CNTFR	NM_001842	human	genbank	54_36p	-1	reviewed	silent	c.309	p.L103	0.883	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,PatternScan_HEMATOPO_REC_L_F3,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
CACNG2	10369	genome.wustl.edu	36	22	35290841	35290841	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	22	35290841	35290841	C	T	SNP	CACNG2	NM_006078	human	genbank	54_36p	-1	reviewed	missense	c.475	p.A159T	1.000	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin	-	no_errors
SPEF2	79925	genome.wustl.edu	36	5	35682628	35682628	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	5	35682628	35682628	G	A	SNP	SPEF2	NM_024867	human	genbank	54_36p	+1	validated	missense	c.688	p.E230K	0.995	NULL	HMMPfam_DUF1042,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_hATC	-	no_errors
KCTD20	222658	genome.wustl.edu	36	6	36545862	36545862	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	6	36545862	36545862	C	T	SNP	KCTD20	NM_173562	human	genbank	54_36p	+1	provisional	missense	c.10	p.H4Y	0.140	NULL	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra	-	no_errors
LOC728318	728318	genome.wustl.edu	36	17	36600341	36600341	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	17	36600341	36600341	G	C	SNP	LOC728318	XM_001718456	human	genbank	54_36p	+1	model	missense	c.677	p.R226T	0.731	NULL	HMMPfam_Keratin_B2	-	no_errors
EPDR1	54749	genome.wustl.edu	36	7	37926900	37926900	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	7	37926900	37926900	C	T	SNP	EPDR1	NM_017549	human	genbank	54_36p	+1	reviewed	missense	c.194	p.S65F	0.001	NULL	HMMPfam_Ependymin,PatternScan_EPENDYMIN_1,PatternScan_EPENDYMIN_2	-	no_errors
HSD17B7P2	158160	genome.wustl.edu	36	10	38685349	38685349	+	RNA	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	10	38685349	38685349	C	T	SNP	HSD17B7P2	NR_003086	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.000	-	-	-	pseudogene
LOC727860	727860	genome.wustl.edu	36	10	38984471	38984471	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	10	38984471	38984471	C	T	SNP	LOC727860	XR_037651	human	genbank	54_36p	-1	model	splice_site	c.NULL	NULL	0.079	-	-	-	pseudogene
MPP3	4356	genome.wustl.edu	36	17	39234277	39234277	+	RNA	SNP	C	T	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	17	39234277	39234277	C	T	SNP	MPP3	NR_003562	human	genbank	54_36p	-1	reviewed	rna	NULL	NULL	0.016	-	-	-	no_errors
PTPRT	11122	genome.wustl.edu	36	20	40818516	40818516	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	20	40818516	40818516	C	A	SNP	PTPRT	NM_133170	human	genbank	54_36p	-1	reviewed	nonsense	c.859	p.E287*	1.000	superfamily_Immunoglobulin	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_Immunoglobulin,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
CARD6	84674	genome.wustl.edu	36	5	40889494	40889494	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	5	40889494	40889494	C	A	SNP	CARD6	NM_032587	human	genbank	54_36p	+1	reviewed	missense	c.2303	p.P768H	0.031	NULL	superfamily_DEATH_like,HMMPfam_CARD	-	no_errors
RRP7A	27341	genome.wustl.edu	36	22	41240147	41240147	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	22	41240147	41240147	G	C	SNP	RRP7A	NM_015703	human	genbank	54_36p	-1	provisional	missense	c.666	p.S222R	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM	-	no_errors
CASK	8573	genome.wustl.edu	36	X	41531380	41531380	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	X	41531380	41531380	G	T	SNP	CASK	NM_003688	human	genbank	54_36p	-1	validated	missense	c.273	p.F91L	1.000	HMMSmart_S_TKc,HMMPfam_Pkinase,superfamily_Kinase_like	HMMSmart_S_TKc,HMMPfam_Pkinase,superfamily_Kinase_like,superfamily_SSF101288,HMMSmart_L27,HMMPfam_L27,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2,superfamily_SSF52540,HMMSmart_GuKc,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin	-	no_errors
TRAK1	22906	genome.wustl.edu	36	3	42240000	42240000	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	3	42240000	42240000	C	A	SNP	TRAK1	NM_001042646	human	genbank	54_36p	+1	validated	missense	c.2629	p.P877T	1.000	NULL	HMMPfam_HAP1_N,PatternScan_HEMOPEXIN	-	no_errors
ERMAP	114625	genome.wustl.edu	36	1	43081357	43081357	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	43081357	43081357	C	G	SNP	ERMAP	NM_001017922	human	genbank	54_36p	+1	reviewed	missense	c.1295	p.A432G	0.012	NULL	HMMSmart_IG,superfamily_SSF48726,HMMPfam_V-set,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors
SLC12A5	57468	genome.wustl.edu	36	20	44111764	44111764	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	20	44111764	44111764	C	T	SNP	SLC12A5	NM_020708	human	genbank	54_36p	+1	reviewed	silent	c.2109	p.G703	0.998	NULL	HMMPfam_AA_permease	-	no_errors
FLJ16165	390928	genome.wustl.edu	36	19	44281016	44281016	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	19	44281016	44281016	C	T	SNP	FLJ16165	NM_001004318	human	genbank	54_36p	+1	provisional	missense	c.200	p.S67L	0.032	superfamily_Purple_Pase_N	superfamily_Purple_Pase_N,superfamily_SSF56300,HMMPfam_Metallophos	-	no_errors
CDC5L	988	genome.wustl.edu	36	6	44505578	44505578	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	6	44505578	44505578	C	G	SNP	CDC5L	NM_001253	human	genbank	54_36p	+1	reviewed	missense	c.2044	p.L682V	1.000	NULL	superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors
ANUBL1	93550	genome.wustl.edu	36	10	45433610	45433610	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	10	45433610	45433610	T	G	SNP	ANUBL1	NM_174890	human	genbank	54_36p	-1	validated	missense	c.2032	p.S678R	1.000	HMMSmart_SM00154,HMMPfam_zf-AN1	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,HMMSmart_SM00154,HMMPfam_zf-AN1	-	no_errors
SLC38A4	55089	genome.wustl.edu	36	12	45449393	45449393	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	12	45449393	45449393	G	T	SNP	SLC38A4	NM_018018	human	genbank	54_36p	-1	validated	missense	c.1385	p.A462E	0.976	HMMPfam_Aa_trans	HMMPfam_Aa_trans,PatternScan_RIBOSOMAL_L30	-	no_errors
CCR3	1232	genome.wustl.edu	36	3	46282533	46282533	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	3	46282533	46282533	T	G	SNP	CCR3	NM_001837	human	genbank	54_36p	+1	reviewed	missense	c.880	p.C294G	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
GPR116	221395	genome.wustl.edu	36	6	46933923	46933923	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	6	46933923	46933923	G	C	SNP	GPR116	NM_001098518	human	genbank	54_36p	-1	validated	missense	c.3676	p.P1226A	0.979	HMMPfam_7tm_2	PatternScan_EGF_2,superfamily_SEA domain,HMMPfam_SEA,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
CYP4B1	1580	genome.wustl.edu	36	1	47037454	47037454	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	47037454	47037454	G	T	SNP	CYP4B1	NM_001099772	human	genbank	54_36p	+1	reviewed	silent	c.114	p.T38	0.208	NULL	superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors
WDR13	64743	genome.wustl.edu	36	X	48348298	48348298	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	X	48348298	48348298	C	T	SNP	WDR13	NM_017883	human	genbank	54_36p	+1	reviewed	silent	c.1392	p.D464	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
SBF1	6305	genome.wustl.edu	36	22	49250402	49250402	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	22	49250402	49250402	C	A	SNP	SBF1	NM_002972	human	genbank	54_36p	-1	validated	missense	c.1226	p.G409V	0.513	HMMPfam_dDENN,HMMSmart_SM00801	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
LOC646801	646801	genome.wustl.edu	36	11	50184018	50184018	+	RNA	SNP	A	A	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	50184018	50184018	A	G	SNP	LOC646801	XR_017320	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.999	-	-	-	pseudogene
SFRS16	11129	genome.wustl.edu	36	19	50263531	50263531	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	19	50263531	50263531	C	G	SNP	SFRS16	NM_007056	human	genbank	54_36p	+1	validated	missense	c.1721	p.P574R	0.991	NULL	HMMPfam_DRY_EERY	-	no_errors
NOVA2	4858	genome.wustl.edu	36	19	51135189	51135189	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	19	51135189	51135189	C	T	SNP	NOVA2	NM_002516	human	genbank	54_36p	-1	validated	silent	c.1251	p.L417	1.000	HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1	HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1	-	no_errors
PFDN5	5204	genome.wustl.edu	36	12	51975653	51975653	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	12	51975653	51975653	T	G	SNP	PFDN5	NM_002624	human	genbank	54_36p	+1	reviewed	missense	c.35	p.L12R	1.000	superfamily_Prefoldin	superfamily_Prefoldin,HMMPfam_Prefoldin	-	no_errors
PBRM1	55193	genome.wustl.edu	36	3	52598202	52598202	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	3	52598202	52598202	G	C	SNP	PBRM1	NM_018165	human	genbank	54_36p	-1	validated	nonsense	c.2793	p.Y931*	0.994	HMMPfam_BAH,HMMSmart_BAH	superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1,HMMPfam_BAH,HMMSmart_BAH,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
LNX1	84708	genome.wustl.edu	36	4	54039608	54039608	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	4	54039608	54039608	C	G	SNP	LNX1	NM_032622	human	genbank	54_36p	-1	reviewed	missense	c.1256	p.G419A	0.575	superfamily_PDZ,HMMPfam_PDZ	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	-	no_errors
RUVBL2	10856	genome.wustl.edu	36	19	54206307	54206307	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	19	54206307	54206307	C	T	SNP	RUVBL2	NM_006666	human	genbank	54_36p	+1	reviewed	missense	c.929	p.S310F	1.000	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_TIP49	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,HMMPfam_TIP49	-	no_errors
LOC644745	644745	genome.wustl.edu	36	12	55192138	55192138	+	RNA	SNP	T	T	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	12	55192138	55192138	T	A	SNP	LOC644745	XR_016744	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene
PCSK9	255738	genome.wustl.edu	36	1	55284868	55284868	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	55284868	55284868	A	T	SNP	PCSK9	NM_174936	human	genbank	54_36p	+1	reviewed	missense	c.484	p.T162S	0.440	superfamily_Subtilisin-like	superfamily_Protease propeptides/inhibitors,HMMPfam_Inhibitor_I9,superfamily_Subtilisin-like,HMMPfam_Peptidase_S8	-	no_errors
OR5F1	338674	genome.wustl.edu	36	11	55518348	55518348	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	55518348	55518348	G	A	SNP	OR5F1	NM_003697	human	genbank	54_36p	-1	provisional	silent	c.330	p.T110	0.002	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
NLRC5	84166	genome.wustl.edu	36	16	55649519	55649519	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	16	55649519	55649519	T	G	SNP	NLRC5	NM_032206	human	genbank	54_36p	+1	validated	missense	c.3788	p.L1263R	0.674	superfamily_RNI-like,HMMSmart_SM00367,HMMSmart_SM00368	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00367,HMMSmart_SM00368,HMMPfam_LRR_1	-	no_errors
OR8J3	81168	genome.wustl.edu	36	11	55661555	55661555	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	55661555	55661555	G	A	SNP	OR8J3	NM_001004064	human	genbank	54_36p	-1	provisional	silent	c.216	p.G72	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR8H1	219469	genome.wustl.edu	36	11	55814187	55814187	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	55814187	55814187	A	T	SNP	OR8H1	NM_001005199	human	genbank	54_36p	-1	provisional	missense	c.928	p.S310T	0.000	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LRP1	4035	genome.wustl.edu	36	12	55881175	55881175	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	12	55881175	55881175	C	T	SNP	LRP1	NM_002332	human	genbank	54_36p	+1	validated	silent	c.10317	p.C3439	0.992	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_1	-	no_errors
SHANK1	50944	genome.wustl.edu	36	19	55897619	55897619	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	19	55897619	55897619	G	A	SNP	SHANK1	NM_016148	human	genbank	54_36p	-1	validated	missense	c.1664	p.P555L	0.985	superfamily_SH3-domain	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
LOC440180	440180	genome.wustl.edu	36	14	56578080	56578080	+	RNA	SNP	A	A	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	14	56578080	56578080	A	C	SNP	LOC440180	XR_017569	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
DST	667	genome.wustl.edu	36	6	56589822	56589822	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	6	56589822	56589822	C	T	SNP	DST	NM_001723	human	genbank	54_36p	-1	reviewed	silent	c.6402	p.T2134	0.738	superfamily_SSF75399,HMMSmart_PLEC	HMMSmart_SPEC,superfamily_Spectrin,HMMPfam_Spectrin,superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin	-	no_errors
PRKAA2	5563	genome.wustl.edu	36	1	56932060	56932060	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	56932060	56932060	G	C	SNP	PRKAA2	NM_006252	human	genbank	54_36p	+1	validated	silent	c.510	p.L170	0.984	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
SLC38A7	55238	genome.wustl.edu	36	16	57268750	57268750	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	16	57268750	57268750	G	C	SNP	SLC38A7	NM_018231	human	genbank	54_36p	-1	provisional	missense	c.691	p.P231A	0.958	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
POLR2B	5431	genome.wustl.edu	36	4	57567795	57567795	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	4	57567795	57567795	G	A	SNP	POLR2B	NM_000938	human	genbank	54_36p	+1	reviewed	missense	c.1274	p.R425Q	1.000	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_3,HMMPfam_RNA_pol_Rpb2_4,HMMPfam_RNA_pol_Rpb2_5,HMMPfam_RNA_pol_Rpb2_6,PatternScan_RNA_POL_BETA,HMMPfam_RNA_pol_Rpb2_7	-	no_errors
PDE4D	5144	genome.wustl.edu	36	5	58308888	58308888	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	5	58308888	58308888	C	G	SNP	PDE4D	NM_001104631	human	genbank	54_36p	-1	validated	missense	c.1594	p.E532Q	1.000	superfamily_HD-domain/PDEase-like,HMMPfam_PDEase_I	superfamily_HD-domain/PDEase-like,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
C14orf135	64430	genome.wustl.edu	36	14	59661618	59661618	+	Silent	SNP	T	T	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	14	59661618	59661618	T	A	SNP	C14orf135	NM_022495	human	genbank	54_36p	+1	validated	silent	c.2274	p.P758	0.592	NULL	HMMPfam_Pecanex_C	-	no_errors
ZNF549	256051	genome.wustl.edu	36	19	62741453	62741453	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	19	62741453	62741453	G	T	SNP	ZNF549	NM_153263	human	genbank	54_36p	+1	provisional	silent	c.1230	p.G410	0.982	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
RCOR2	283248	genome.wustl.edu	36	11	63438335	63438335	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	63438335	63438335	G	A	SNP	RCOR2	NM_173587	human	genbank	54_36p	-1	provisional	missense	c.649	p.P217S	0.950	NULL	HMMPfam_ELM2,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors
ADAMTS6	11174	genome.wustl.edu	36	5	64557751	64557751	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	5	64557751	64557751	T	G	SNP	ADAMTS6	NM_197941	human	genbank	54_36p	-1	reviewed	missense	c.1985	p.Y662S	1.000	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
NPAS4	266743	genome.wustl.edu	36	11	65948232	65948232	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	65948232	65948232	G	T	SNP	NPAS4	NM_178864	human	genbank	54_36p	+1	validated	missense	c.1295	p.G432V	1.000	NULL	HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3	-	no_errors
ENSG00000218456	0	genome.wustl.edu	36	9	66194867	66194867	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	9	66194867	66194867	C	T	SNP	ENSG00000218456	ENST00000405657	human	ensembl	54_36p	+1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_coding_region:pseudogene
NDUFV1	4723	genome.wustl.edu	36	11	67133580	67133580	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	67133580	67133580	C	G	SNP	NDUFV1	NM_007103	human	genbank	54_36p	+1	validated	missense	c.408	p.H136Q	1.000	HMMPfam_Complex1_51K	HMMPfam_Complex1_51K,PatternScan_COMPLEX1_51K_1,HMMPfam_SLBB,HMMPfam_NADH_4Fe-4S,PatternScan_COMPLEX1_51K_2	-	no_errors
CTNNA3	29119	genome.wustl.edu	36	10	68196044	68196044	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	10	68196044	68196044	G	A	SNP	CTNNA3	NM_013266	human	genbank	54_36p	-1	validated	missense	c.1265	p.T422I	1.000	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
PROKR1	10887	genome.wustl.edu	36	2	68735945	68735945	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	68735945	68735945	C	T	SNP	PROKR1	NM_138964	human	genbank	54_36p	+1	validated	silent	c.915	p.I305	0.782	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
RAB37	326624	genome.wustl.edu	36	17	70237080	70237080	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	17	70237080	70237080	A	T	SNP	RAB37	NM_175738	human	genbank	54_36p	+1	validated	missense	c.163	p.T55S	1.000	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	-	no_errors
HIGD2B	123346	genome.wustl.edu	36	15	70755648	70755648	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	15	70755648	70755648	G	A	SNP	HIGD2B	ENST00000311755	human	ensembl	54_36p	-1	known	missense	c.121	p.R41C	1.000	HMMPfam_HIG_1_N	HMMPfam_HIG_1_N	-	no_errors
EVPL	2125	genome.wustl.edu	36	17	71529174	71529174	+	Silent	SNP	G	C	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	17	71529174	71529174	G	C	SNP	EVPL	NM_001988	human	genbank	54_36p	-1	validated	silent	c.981	p.T327	0.998	HMMSmart_SM00150,superfamily_Spectrin repeat	superfamily_Spectrin repeat,HMMSmart_SM00150,HMMSmart_SM00250,superfamily_Prefoldin,superfamily_Plakin repeat,HMMPfam_Plectin	-	no_errors
INPPL1	3636	genome.wustl.edu	36	11	71623247	71623247	+	Silent	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	71623247	71623247	C	G	SNP	INPPL1	NM_001567	human	genbank	54_36p	+1	reviewed	silent	c.2355	p.A785	0.996	NULL	superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Exo_endo_phos,HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors
PGM2L1	283209	genome.wustl.edu	36	11	73740089	73740089	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	73740089	73740089	T	C	SNP	PGM2L1	NM_173582	human	genbank	54_36p	-1	validated	missense	c.736	p.I246V	1.000	superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_II	superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I,HMMPfam_PGM_PMM_II,superfamily_Phosphoglucomutase C-terminal domain	-	no_errors
GTF2IRD2	84163	genome.wustl.edu	36	7	73874898	73874898	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	7	73874898	73874898	A	G	SNP	GTF2IRD2	NM_173537	human	genbank	54_36p	-1	validated	silent	c.564	p.S188	0.127	NULL	HMMPfam_GTF2I	-	no_errors
USP54	159195	genome.wustl.edu	36	10	74946836	74946836	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	10	74946836	74946836	A	G	SNP	USP54	NM_152586	human	genbank	54_36p	-1	provisional	silent	c.3354	p.Y1118	0.047	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH	-	no_errors
TYW3	127253	genome.wustl.edu	36	1	75002288	75002288	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	75002288	75002288	G	A	SNP	TYW3	NM_138467	human	genbank	54_36p	+1	provisional	missense	c.683	p.R228H	0.000	NULL	HMMPfam_TYW3,superfamily_DUF207	-	no_errors
ADCK1	57143	genome.wustl.edu	36	14	77435301	77435301	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	14	77435301	77435301	G	T	SNP	ADCK1	NM_020421	human	genbank	54_36p	+1	validated	missense	c.688	p.G230W	1.000	superfamily_Kinase_like,HMMPfam_ABC1	superfamily_Kinase_like,HMMPfam_ABC1	-	no_errors
ROBO2	6092	genome.wustl.edu	36	3	77682670	77682670	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	3	77682670	77682670	C	A	SNP	ROBO2	NM_002942	human	genbank	54_36p	+1	reviewed	missense	c.1071	p.F357L	0.999	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
ODZ4	26011	genome.wustl.edu	36	11	78058751	78058751	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	78058751	78058751	G	C	SNP	ODZ4	NM_001098816	human	genbank	54_36p	-1	validated	missense	c.4301	p.A1434G	1.000	NULL	superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_NHL repeat,superfamily_TolB C-terminal domain,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors
VPS13A	23230	genome.wustl.edu	36	9	79210716	79210716	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	9	79210716	79210716	A	T	SNP	VPS13A	NM_033305	human	genbank	54_36p	+1	reviewed	missense	c.9392	p.E3131V	1.000	NULL	HMMPfam_DUF1162	-	no_errors
IL16	3603	genome.wustl.edu	36	15	79349021	79349021	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	15	79349021	79349021	G	A	SNP	IL16	NM_172217	human	genbank	54_36p	+1	reviewed	missense	c.652	p.V218M	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
C14orf145	145508	genome.wustl.edu	36	14	80321193	80321193	+	Silent	SNP	T	T	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	14	80321193	80321193	T	C	SNP	C14orf145	NM_152446	human	genbank	54_36p	-1	validated	silent	c.2010	p.A670	0.056	NULL	NULL	-	no_errors
ELMOD3	0	genome.wustl.edu	36	2	85437852	85437852	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	85437852	85437852	C	G	SNP	ELMOD3	NM_032213	human	genbank	54_36p	+1	validated	missense	c.20	p.S7C	1.000	NULL	HMMPfam_ELMO_CED12	-	no_errors
LRRCC1	85444	genome.wustl.edu	36	8	86234426	86234426	+	Silent	SNP	T	T	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	8	86234426	86234426	T	G	SNP	LRRCC1	NM_033402	human	genbank	54_36p	+1	validated	silent	c.2061	p.S687	1.000	NULL	superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365,HMMPfam_LRR_1	-	no_errors
RASA1	5921	genome.wustl.edu	36	5	86715299	86715299	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	5	86715299	86715299	C	G	SNP	RASA1	NM_002890	human	genbank	54_36p	+1	reviewed	missense	c.2704	p.L902V	1.000	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	-	no_errors
RMND5A	64795	genome.wustl.edu	36	2	86850710	86850710	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	86850710	86850710	T	C	SNP	RMND5A	NM_022780	human	genbank	54_36p	+1	validated	missense	c.908	p.I303T	0.999	NULL	HMMSmart_SM00667,HMMSmart_SM00668,HMMSmart_SM00757,superfamily_RING/U-box	-	no_errors
TUBB3	10381	genome.wustl.edu	36	16	88529494	88529494	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	16	88529494	88529494	C	A	SNP	TUBB3	NM_006086	human	genbank	54_36p	+1	validated	missense	c.1134	p.F378L	1.000	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
GBP5	115362	genome.wustl.edu	36	1	89503125	89503125	+	Silent	SNP	T	T	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	89503125	89503125	T	C	SNP	GBP5	NM_052942	human	genbank	54_36p	-1	validated	silent	c.981	p.Q327	0.995	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain	-	no_errors
GBP6	163351	genome.wustl.edu	36	1	89606752	89606752	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	89606752	89606752	T	G	SNP	GBP6	NM_198460	human	genbank	54_36p	+1	validated	missense	c.54	p.N18K	0.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain	-	no_errors
PTEN	5728	genome.wustl.edu	36	10	89682863	89682863	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	10	89682863	89682863	C	T	SNP	PTEN	NM_000314	human	genbank	54_36p	+1	reviewed	missense	c.367	p.H123Y	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
ZNF644	84146	genome.wustl.edu	36	1	91176546	91176546	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	91176546	91176546	G	T	SNP	ZNF644	NM_201269	human	genbank	54_36p	-1	validated	missense	c.2953	p.H985N	1.000	HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
SERPINA2	390502	genome.wustl.edu	36	14	93902280	93902280	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	14	93902280	93902280	G	A	SNP	SERPINA2	ENST00000238576	human	ensembl	54_36p	-1	known	missense	c.500	p.S167F	0.003	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093	-	no_start_codon
TEKT4	150483	genome.wustl.edu	36	2	94901418	94901418	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	94901418	94901418	A	T	SNP	TEKT4	NM_144705	human	genbank	54_36p	+1	provisional	nonsense	c.367	p.K123*	0.997	HMMPfam_Tektin	HMMPfam_Tektin	-	no_errors
LOC285033	285033	genome.wustl.edu	36	2	96270021	96270021	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	96270021	96270021	C	G	SNP	LOC285033	NM_001037228	human	genbank	54_36p	+1	predicted	missense	c.233	p.P78R	0.003	NULL	NULL	-	no_errors
TMEM127	55654	genome.wustl.edu	36	2	96283353	96283353	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	96283353	96283353	C	G	SNP	TMEM127	NM_017849	human	genbank	54_36p	-1	provisional	missense	c.637	p.E213Q	0.994	NULL	NULL	-	no_errors
FAHD2B	151313	genome.wustl.edu	36	2	97113676	97113676	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	97113676	97113676	G	T	SNP	FAHD2B	NM_199336	human	genbank	54_36p	-1	provisional	missense	c.751	p.Q251K	1.000	superfamily_Fumarylacetoacetase_C-rel,HMMPfam_FAA_hydrolase	superfamily_Fumarylacetoacetase_C-rel,HMMPfam_FAA_hydrolase	-	no_errors
SLIT1	6585	genome.wustl.edu	36	10	98814579	98814579	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	10	98814579	98814579	A	C	SNP	SLIT1	NM_003061	human	genbank	54_36p	-1	validated	missense	c.530	p.F177C	1.000	superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMSmart_SM00274,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors
LOC100127982	0	genome.wustl.edu	36	8	98934868	98934868	+	RNA	SNP	A	G	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	8	98934868	98934868	A	G	SNP	LOC100127982	XR_039024	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.923	-	-	-	pseudogene
CNTN5	53942	genome.wustl.edu	36	11	99221196	99221196	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	99221196	99221196	A	T	SNP	CNTN5	NM_014361	human	genbank	54_36p	+1	reviewed	missense	c.569	p.Q190L	1.000	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_V-set,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
TSPAN5	10098	genome.wustl.edu	36	4	99618970	99618970	+	Silent	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	4	99618970	99618970	C	G	SNP	TSPAN5	NM_005723	human	genbank	54_36p	-1	reviewed	silent	c.465	p.G155	1.000	HMMPfam_Tetraspannin,superfamily_Tetraspanin	HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin	-	no_errors
AFF3	3899	genome.wustl.edu	36	2	99991822	99991822	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	99991822	99991822	A	G	SNP	AFF3	NM_001025108	human	genbank	54_36p	-1	reviewed	missense	c.133	p.Y45H	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
MUC17	140453	genome.wustl.edu	36	7	100472877	100472877	+	Silent	SNP	C	C	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	7	100472877	100472877	C	A	SNP	MUC17	NM_001040105	human	genbank	54_36p	+1	provisional	silent	c.11460	p.L3820	0.049	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
TGFBR1	7046	genome.wustl.edu	36	9	100940037	100940037	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	9	100940037	100940037	G	C	SNP	TGFBR1	NM_004612	human	genbank	54_36p	+1	reviewed	missense	c.650	p.G217A	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	superfamily_Snake toxin-like,HMMPfam_Activin_recp,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ZPLD1	131368	genome.wustl.edu	36	3	103679033	103679033	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	3	103679033	103679033	G	A	SNP	ZPLD1	NM_175056	human	genbank	54_36p	+1	provisional	missense	c.1177	p.G393R	1.000	NULL	HMMPfam_Zona_pellucida,HMMSmart_ZP	-	no_errors
ALKBH8	91801	genome.wustl.edu	36	11	106929120	106929120	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	106929120	106929120	G	T	SNP	ALKBH8	NM_138775	human	genbank	54_36p	-1	validated	missense	c.519	p.H173Q	1.000	NULL	HMMPfam_DUF1891,PatternScan_RIBOSOMAL_L23	-	no_errors
TRPV4	59341	genome.wustl.edu	36	12	108718771	108718771	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	12	108718771	108718771	T	C	SNP	TRPV4	NM_021625	human	genbank	54_36p	-1	reviewed	missense	c.1274	p.D425G	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans	-	no_errors
EBAG9	9166	genome.wustl.edu	36	8	110642273	110642273	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	8	110642273	110642273	G	T	SNP	EBAG9	NM_004215	human	genbank	54_36p	+1	reviewed	nonsense	c.460	p.E154*	1.000	NULL	NULL	-	no_errors
STARD4	134429	genome.wustl.edu	36	5	110863678	110863678	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	5	110863678	110863678	C	A	SNP	STARD4	NM_139164	human	genbank	54_36p	-1	provisional	missense	c.423	p.K141N	0.947	superfamily_SSF55961,HMMPfam_START	superfamily_SSF55961,HMMPfam_START	-	no_errors
SLC9A10	285335	genome.wustl.edu	36	3	113467822	113467822	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	3	113467822	113467822	T	G	SNP	SLC9A10	NM_183061	human	genbank	54_36p	-1	validated	missense	c.831	p.L277F	1.000	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,PatternScan_WD_REPEATS_1,superfamily_cAMP-binding domain-like,HMMPfam_cNMP_binding	-	no_errors
KPNA5	3841	genome.wustl.edu	36	6	117153660	117153660	+	Silent	SNP	A	A	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	6	117153660	117153660	A	C	SNP	KPNA5	NM_002269	human	genbank	54_36p	+1	reviewed	silent	c.1053	p.P351	0.997	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	HMMPfam_IBB,superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors
GPRC6A	222545	genome.wustl.edu	36	6	117220570	117220570	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	6	117220570	117220570	G	T	SNP	GPRC6A	NM_148963	human	genbank	54_36p	-1	validated	missense	c.2209	p.P737T	0.954	HMMPfam_7tm_3	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3	-	no_errors
BCL9L	283149	genome.wustl.edu	36	11	118277580	118277580	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	118277580	118277580	G	C	SNP	BCL9L	NM_182557	human	genbank	54_36p	-1	validated	silent	c.2082	p.P694	0.087	NULL	PatternScan_RIBOSOMAL_S6E	-	no_errors
USP2	9099	genome.wustl.edu	36	11	118733510	118733510	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	118733510	118733510	T	C	SNP	USP2	NM_004205	human	genbank	54_36p	-1	validated	missense	c.1502	p.H501R	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
HNF1A	6927	genome.wustl.edu	36	12	119918503	119918503	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	12	119918503	119918503	C	T	SNP	HNF1A	NM_000545	human	genbank	54_36p	+1	reviewed	silent	c.1011	p.S337	0.095	HMMPfam_HNF-1B_C	superfamily_Dimerization cofactor of HNF-1 alpha,HMMPfam_HNF-1_N,superfamily_lambda repressor-like DNA-binding domains,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_HNF-1B_C,HMMPfam_HNF-1A_C	-	no_errors
PUS3	83480	genome.wustl.edu	36	11	125271012	125271012	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	11	125271012	125271012	C	G	SNP	PUS3	NM_031307	human	genbank	54_36p	-1	validated	missense	c.378	p.Q126H	1.000	superfamily_PsdUridine_synth_cat_dom,HMMPfam_PseudoU_synth_1	superfamily_PsdUridine_synth_cat_dom,HMMPfam_PseudoU_synth_1	-	no_errors
RBM28	55131	genome.wustl.edu	36	7	127753140	127753140	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	7	127753140	127753140	C	G	SNP	RBM28	NM_018077	human	genbank	54_36p	-1	validated	missense	c.1170	p.Q390H	1.000	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1	-	no_errors
KCNQ3	3786	genome.wustl.edu	36	8	133257032	133257032	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	8	133257032	133257032	G	C	SNP	KCNQ3	NM_004519	human	genbank	54_36p	-1	reviewed	silent	c.783	p.L261	1.000	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors
SARDH	1757	genome.wustl.edu	36	9	135551299	135551299	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	9	135551299	135551299	C	G	SNP	SARDH	NM_007101	human	genbank	54_36p	-1	reviewed	missense	c.1674	p.K558N	0.983	superfamily_SSF103025	superfamily_SSF51905,HMMPfam_DAO,superfamily_SSF54373,superfamily_SSF103025,HMMPfam_GCV_T,HMMPfam_GCV_T_C,superfamily_SSF101790	-	no_errors
LOC442727	442727	genome.wustl.edu	36	7	137739593	137739593	+	RNA	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	7	137739593	137739593	C	T	SNP	LOC442727	XR_017503	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.987	-	-	-	pseudogene
LOC442727	442727	genome.wustl.edu	36	7	137739737	137739737	+	RNA	SNP	C	C	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	7	137739737	137739737	C	A	SNP	LOC442727	XR_017503	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene
PCDHGC3	5098	genome.wustl.edu	36	5	140837383	140837383	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	5	140837383	140837383	G	C	SNP	PCDHGC3	NM_002588	human	genbank	54_36p	+1	reviewed	missense	c.1516	p.V506L	0.990	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
MAGEC2	51438	genome.wustl.edu	36	X	141119063	141119063	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	X	141119063	141119063	G	C	SNP	MAGEC2	NM_016249	human	genbank	54_36p	-1	reviewed	missense	c.377	p.T126S	0.000	NULL	HMMPfam_MAGE	-	no_errors
PTK2	5747	genome.wustl.edu	36	8	141831267	141831267	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	8	141831267	141831267	G	T	SNP	PTK2	ENST00000395214	human	ensembl	54_36p	-1	known	nonsense	c.861	p.C287*	0.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	superfamily_FERM_3-hlx,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_FERM_2,HMMPfam_Focal_AT,superfamily_Focal_AT	-	no_errors
PLSCR1	5359	genome.wustl.edu	36	3	147733974	147733974	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	3	147733974	147733974	G	C	SNP	PLSCR1	NM_021105	human	genbank	54_36p	-1	validated	missense	c.67	p.P23A	0.004	NULL	HMMPfam_Scramblase	-	no_errors
SSPO	23145	genome.wustl.edu	36	7	149150195	149150195	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	7	149150195	149150195	G	T	SNP	SSPO	ENST00000378016	human	ensembl	54_36p	+1	known	missense	c.55	p.G19C	0.998	NULL	superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,superfamily_Cysrich_TIL,PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors
PI4KB	5298	genome.wustl.edu	36	1	149545450	149545450	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	149545450	149545450	A	C	SNP	PI4KB	NM_002651	human	genbank	54_36p	-1	provisional	missense	c.1232	p.I411S	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
ABP1	26	genome.wustl.edu	36	7	150186891	150186891	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	7	150186891	150186891	T	A	SNP	ABP1	NM_001091	human	genbank	54_36p	+1	reviewed	missense	c.1678	p.S560T	0.000	superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxid	superfamily_Amine oxidase N-terminal region,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxid,PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2	-	no_errors
ZBTB7B	51043	genome.wustl.edu	36	1	153254296	153254296	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	153254296	153254296	A	G	SNP	ZBTB7B	NM_015872	human	genbank	54_36p	+1	validated	missense	c.536	p.D179G	0.917	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667,HMMPfam_zf-C2H2	-	no_errors
ARHGEF2	9181	genome.wustl.edu	36	1	154198545	154198545	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	154198545	154198545	G	A	SNP	ARHGEF2	NM_004723	human	genbank	54_36p	-1	reviewed	silent	c.1110	p.I370	0.426	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,HMMPfam_PH,superfamily_PH domain-like,HMMSmart_SM00233	-	no_errors
UBE3C	9690	genome.wustl.edu	36	7	156708716	156708716	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	7	156708716	156708716	G	C	SNP	UBE3C	NM_014671	human	genbank	54_36p	+1	validated	missense	c.2010	p.L670F	0.998	NULL	HMMSmart_SM00015,HMMPfam_IQ,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
GMPS	8833	genome.wustl.edu	36	3	157106644	157106644	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	3	157106644	157106644	G	T	SNP	GMPS	NM_003875	human	genbank	54_36p	+1	reviewed	missense	c.424	p.G142C	1.000	superfamily_Class I glutamine amidotransferase-like,HMMPfam_GATase	superfamily_Class I glutamine amidotransferase-like,HMMPfam_GATase,superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_ExsB,HMMPfam_GMP_synt_C,superfamily_GMP synthetase C-terminal dimerisation domain	-	no_errors
AIM2	9447	genome.wustl.edu	36	1	157299956	157299956	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	157299956	157299956	G	T	SNP	AIM2	NM_004833	human	genbank	54_36p	-1	reviewed	missense	c.949	p.L317M	0.009	HMMPfam_HIN	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_HIN	-	no_errors
ACVR1	90	genome.wustl.edu	36	2	158342921	158342921	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	158342921	158342921	T	A	SNP	ACVR1	NM_001105	human	genbank	54_36p	-1	reviewed	missense	c.511	p.I171F	1.000	NULL	HMMPfam_Activin_recp,superfamily_SSF57302,HMMPfam_TGF_beta_GS,HMMSmart_GS,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ATP1A4	480	genome.wustl.edu	36	1	158418174	158418174	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	158418174	158418174	C	T	SNP	ATP1A4	NM_144699	human	genbank	54_36p	+1	reviewed	missense	c.2813	p.A938V	0.992	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_C	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors
VEPH1	79674	genome.wustl.edu	36	3	158461746	158461746	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	3	158461746	158461746	G	A	SNP	VEPH1	NM_024621	human	genbank	54_36p	-1	provisional	silent	c.2373	p.F791	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
IFT80	57560	genome.wustl.edu	36	3	161479771	161479771	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	3	161479771	161479771	C	T	SNP	IFT80	NM_020800	human	genbank	54_36p	-1	validated	silent	c.1740	p.L580	0.998	NULL	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,superfamily_Cyt_cd1_haem_C	-	no_errors
ODZ2	57451	genome.wustl.edu	36	5	167407052	167407052	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	5	167407052	167407052	A	G	SNP	ODZ2	ENST00000388903	human	ensembl	54_36p	+1	known	missense	c.1229	p.D410G	1.000	NULL	HMMPfam_Ten_N,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Carboxypeptidase regulatory domain,superfamily_NHL repeat,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors
SLC9A11	284525	genome.wustl.edu	36	1	171812474	171812474	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	171812474	171812474	A	C	SNP	SLC9A11	NM_178527	human	genbank	54_36p	-1	validated	missense	c.851	p.L284R	0.994	HMMPfam_Na_H_Exchanger	PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,HMMPfam_Na_H_Exchanger,HMMPfam_Ion_trans,HMMSmart_cNMP,superfamily_cNMP_binding,HMMPfam_cNMP_binding	-	no_errors
PLD1	5337	genome.wustl.edu	36	3	172877216	172877216	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	3	172877216	172877216	G	C	SNP	PLD1	NM_002662	human	genbank	54_36p	-1	validated	missense	c.2098	p.R700G	1.000	superfamily_Phospholipase D/nuclease	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Phospholipase D/nuclease,HMMPfam_PLDc,HMMSmart_SM00155	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179302635	179302635	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	179302635	179302635	C	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	splice_site	c.14857+1	e59+1	1.000	-	-	-	no_errors
CACNA1E	777	genome.wustl.edu	36	1	180011928	180011928	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	180011928	180011928	G	C	SNP	CACNA1E	NM_000721	human	genbank	54_36p	+1	reviewed	silent	c.5208	p.L1736	1.000	superfamily_Voltage-gated potassium channels	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
STOX2	56977	genome.wustl.edu	36	4	185169019	185169019	+	Silent	SNP	A	C	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	4	185169019	185169019	A	C	SNP	STOX2	NM_020225	human	genbank	54_36p	+1	provisional	silent	c.2034	p.G678	0.810	NULL	HMMPfam_Stork_head	-	no_errors
EIF2B5	8893	genome.wustl.edu	36	3	185342721	185342721	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	3	185342721	185342721	G	C	SNP	EIF2B5	NM_003907	human	genbank	54_36p	+1	validated	silent	c.1305	p.V435	1.000	superfamily_Trimer_LpxA_like,HMMPfam_Hexapep	superfamily_SSF53448,superfamily_Trimer_LpxA_like,HMMPfam_Hexapep,superfamily_ARM-type_fold,HMMSmart_eIF5C,HMMPfam_W2	-	no_errors
ZSWIM2	151112	genome.wustl.edu	36	2	187406118	187406118	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	187406118	187406118	C	G	SNP	ZSWIM2	NM_182521	human	genbank	54_36p	-1	validated	missense	c.915	p.K305N	0.730	NULL	HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_zf-C3HC4	-	no_errors
LOC344328	344328	genome.wustl.edu	36	2	188399228	188399228	+	RNA	SNP	G	G	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	188399228	188399228	G	C	SNP	LOC344328	XR_017370	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.994	-	-	-	pseudogene
MYO1B	4430	genome.wustl.edu	36	2	191936816	191936816	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	191936816	191936816	C	A	SNP	MYO1B	NM_012223	human	genbank	54_36p	+1	validated	missense	c.883	p.L295I	0.178	HMMSmart_MYSc,superfamily_SSF52540,HMMPfam_Myosin_head	HMMSmart_MYSc,superfamily_SSF52540,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_TH1	-	no_errors
DNAH7	56171	genome.wustl.edu	36	2	196407195	196407195	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	196407195	196407195	C	T	SNP	DNAH7	NM_018897	human	genbank	54_36p	-1	validated	missense	c.9080	p.C3027Y	1.000	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,PatternScan_EF_HAND_1,HMMPfam_Dynein_heavy,PatternScan_ADH_SHORT	-	no_errors
IRF6	3664	genome.wustl.edu	36	1	208036385	208036385	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	208036385	208036385	G	A	SNP	IRF6	NM_006147	human	genbank	54_36p	-1	reviewed	missense	c.310	p.P104S	1.000	HMMSmart_IRF,HMMPfam_IRF,superfamily_SSF46785	HMMSmart_IRF,HMMPfam_IRF,superfamily_SSF46785,PatternScan_IRF,superfamily_SMAD_FHA,HMMPfam_IRF-3	-	no_errors
CENPF	1063	genome.wustl.edu	36	1	212880489	212880489	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	212880489	212880489	A	T	SNP	CENPF	NM_016343	human	genbank	54_36p	+1	reviewed	missense	c.2185	p.T729S	0.004	NULL	HMMPfam_Cenp-F_N,superfamily_Spectrin repeat,HMMPfam_Cenp-F_leu_zip,superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F	-	no_errors
IL8RB	3579	genome.wustl.edu	36	2	218708533	218708533	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	218708533	218708533	C	T	SNP	IL8RB	NM_001557	human	genbank	54_36p	+1	reviewed	missense	c.764	p.A255V	0.311	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SLC11A1	6556	genome.wustl.edu	36	2	218955980	218955980	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	218955980	218955980	C	T	SNP	SLC11A1	NM_000578	human	genbank	54_36p	+1	reviewed	missense	c.61	p.P21S	0.956	NULL	HMMPfam_Nramp	-	no_errors
NUP133	55746	genome.wustl.edu	36	1	227688813	227688813	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	227688813	227688813	C	T	SNP	NUP133	NM_018230	human	genbank	54_36p	-1	reviewed	silent	c.1428	p.R476	0.997	HMMPfam_Nup133_N	HMMPfam_Nup133_N,HMMPfam_Nup133	-	no_errors
SLC35F3	148641	genome.wustl.edu	36	1	232433820	232433820	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	232433820	232433820	G	A	SNP	SLC35F3	NM_173508	human	genbank	54_36p	+1	provisional	silent	c.318	p.A106	0.949	NULL	superfamily_SSF103481,HMMPfam_DUF6	-	no_errors
LYST	1130	genome.wustl.edu	36	1	233996196	233996196	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	1	233996196	233996196	T	C	SNP	LYST	NM_000081	human	genbank	54_36p	-1	reviewed	missense	c.5927	p.Y1976C	1.000	NULL	PatternScan_COPPER_BLUE,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
CREBBP	1387	genome.wustl.edu	36	16	3735269	3735282	+	Splice_Site	DEL	AACAACTCACCCTG	AACAACTCACCCTG	-	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	AACAACTCACCCTG	AACAACTCACCCTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	16	3735269	3735282	AACAACTCACCCTG	-	DEL	CREBBP	NM_004380	human	genbank	54_36p	-1	reviewed	splice_site_del	c.3914+5_3914+1	e23-1	0.159:0.074:0.007:0.005:0.512:0.998:0.999:0.999:1.000:1.000:1.000:1.000:0.992:1.000	-	-	(deletion:intron[3734964,3735278], cds_exon[3735279,3735356])	no_errors
APOB	338	genome.wustl.edu	36	2	21117369	21117380	+	In_Frame_Del	DEL	TTGCCCTCAGGG	TTGCCCTCAGGG	-	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	TTGCCCTCAGGG	TTGCCCTCAGGG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	21117369	21117380	TTGCCCTCAGGG	-	DEL	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	in_frame_del	c.329_318	p.NPEG106in_frame_del	0.880:0.874:0.869:0.975:0.973:0.675:0.650:0.618:0.104:0.124:0.134:0.509	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081	(deletion:cds_exon[21117315,21117460])	no_errors
CYTH4	27128	genome.wustl.edu	36	22	36029287	36029292	+	In_Frame_Del	DEL	CCTCCA	CCTCCA	-	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	CCTCCA	CCTCCA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	22	36029287	36029292	CCTCCA	-	DEL	CYTH4	NM_013385	human	genbank	54_36p	+1	reviewed	in_frame_del	c.594_599	p.LH199in_frame_del	1.000:1.000:1.000:0.996:1.000:1.000	superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7	superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	(deletion:cds_exon[36029241,36029389])	no_errors
COL1A1	1277	genome.wustl.edu	36	17	45628314	45628331	+	In_Frame_Del	DEL	GGACCAGCGGGGCCGGTG	GGACCAGCGGGGCCGGTG	-	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	GGACCAGCGGGGCCGGTG	GGACCAGCGGGGCCGGTG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	17	45628314	45628331	GGACCAGCGGGGCCGGTG	-	DEL	COL1A1	NM_000088	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1025_1008	p.TGPAGP337in_frame_del	1.000:1.000:0.997:1.000:1.000:1.000:1.000:1.000:0.997:1.000:1.000:0.991:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	(deletion:cds_exon[45628283,45628336])	no_errors
PCNT	5116	genome.wustl.edu	36	21	46570739	46570740	+	Frame_Shift_Ins	INS	-	-	AAAC	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	21	46570739	46570740	-	AAAC	INS	PCNT	NM_006031	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.75_76	p.T26fs	1.000:1.000	NULL	HMMPfam_PACT_coil_coil	-	no_errors
LOC100129674	0	genome.wustl.edu	36	17	60177315	60177332	+	In_Frame_Del	DEL	GCCCAGATGGTCACCCAA	GCCCAGATGGTCACCCAA	-	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	GCCCAGATGGTCACCCAA	GCCCAGATGGTCACCCAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	17	60177315	60177332	GCCCAGATGGTCACCCAA	-	DEL	LOC100129674	XM_001726853	human	genbank	54_36p	-1	model	in_frame_del	c.119_102	p.WVTIWA35in_frame_del	1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	NULL	(deletion:cds_exon[60177174,60177433])	no_errors
NOX5	79400	genome.wustl.edu	36	15	67114750	67114760	+	Frame_Shift_Del	DEL	GCTGATGCTCA	GCTGATGCTCA	-	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	GCTGATGCTCA	GCTGATGCTCA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	15	67114750	67114760	GCTGATGCTCA	-	DEL	NOX5	NM_024505	human	genbank	54_36p	+1	provisional	frame_shift_del	c.804_814	p.L269fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Ferric_reduct	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_Ferric_reduct,superfamily_Riboflavin_synthase_like_b-brl,HMMPfam_FAD_binding_8,superfamily_SSF52343,HMMPfam_NAD_binding_6	(deletion:cds_exon[67114748,67114901])	no_errors
NQO1	1728	genome.wustl.edu	36	16	68309824	68309838	+	In_Frame_Del	DEL	TCCGACTCCACCACC	TCCGACTCCACCACC	-	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	TCCGACTCCACCACC	TCCGACTCCACCACC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	16	68309824	68309838	TCCGACTCCACCACC	-	DEL	NQO1	NM_000903	human	genbank	54_36p	-1	reviewed	in_frame_del	c.122_108	p.EVVES36in_frame_del	1.000:0.998:0.502:0.986:0.983:0.127:0.060:0.063:0.000:0.001:0.001:0.045:0.993:0.997:0.960	HMMPfam_Flavodoxin_2,superfamily_Flavoproteins	HMMPfam_Flavodoxin_2,superfamily_Flavoproteins	(deletion:cds_exon[68309774,68309938])	no_errors
KIAA0913	23053	genome.wustl.edu	36	10	75229902	75229910	+	In_Frame_Del	DEL	AGCCAGGGC	AGCCAGGGC	-	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	AGCCAGGGC	AGCCAGGGC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	10	75229902	75229910	AGCCAGGGC	-	DEL	KIAA0913	NM_015037	human	genbank	54_36p	+1	validated	in_frame_del	c.4793_4801	p.EPGL1598in_frame_delV	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000	NULL	HMMPfam_SWIM	(deletion:cds_exon[75229775,75229958])	no_errors
C12orf30	80018	genome.wustl.edu	36	12	110955507	110955517	+	Frame_Shift_Del	DEL	ATTGGAAATTA	ATTGGAAATTA	-	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	ATTGGAAATTA	ATTGGAAATTA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	12	110955507	110955517	ATTGGAAATTA	-	DEL	C12orf30	NM_024953	human	genbank	54_36p	-1	validated	frame_shift_del	c.2709_2699	p.L900fs	0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.998	NULL	superfamily_TPR-like,HMMPfam_NatB_MDM20	(deletion:cds_exon[110955420,110955566])	no_errors
TTN	7273	genome.wustl.edu	36	2	179104070	179104082	+	Frame_Shift_Del	DEL	GCAGAAGTACTTA	GCAGAAGTACTTA	-	novel	unknown	TCGA-61-1740-01A-01W-0639-09	TCGA-61-1740-11A-01W-0639-09	GCAGAAGTACTTA	GCAGAAGTACTTA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	0ad81b61-20fc-40d7-b0ad-6ea6bf305d82	5aa6d080-c4d6-4548-925f-dc1bbd21bbb4	2	179104070	179104082	GCAGAAGTACTTA	-	DEL	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	frame_shift_del	c.93461_93449	p.L31150fs	0.998:0.999:0.996:1.000:0.999:0.856:0.888:0.809:0.013:0.006:0.002:0.001:0.423	superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	(deletion:cds_exon[179103214,179108822])	no_errors
