Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-CO3	4514	genome.wustl.edu	36	MT	8539	8539	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	MT	8539	8539	T	C	SNP	MT-CO3	ENST00000361851	human	ensembl	54_36p	+1	known	missense	c.173	p.I58T	NULL	NULL	HMMPfam_ATP-synt_8	-	no_errors
MT-ND5	4540	genome.wustl.edu	36	MT	12614	12614	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	MT	12614	12614	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	missense	c.277	p.A93T	NULL	HMMPfam_Oxidored_q1_N	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
MXRA5	25878	genome.wustl.edu	36	X	3245591	3245591	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	X	3245591	3245591	G	A	SNP	MXRA5	NM_015419	human	genbank	54_36p	-1	validated	missense	c.6131	p.A2044V	0.930	superfamily_Immunoglobulin	HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set	-	no_errors
PPL	5493	genome.wustl.edu	36	16	4875527	4875527	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	16	4875527	4875527	C	A	SNP	PPL	NM_002705	human	genbank	54_36p	-1	reviewed	nonsense	c.3130	p.E1044*	0.977	NULL	HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	no_errors
OR2AG1	144125	genome.wustl.edu	36	11	6763073	6763073	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	11	6763073	6763073	G	A	SNP	OR2AG1	NM_001004489	human	genbank	54_36p	+1	provisional	missense	c.229	p.V77I	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
CHD3	1107	genome.wustl.edu	36	17	7737329	7737329	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	17	7737329	7737329	G	T	SNP	CHD3	NM_001005271	human	genbank	54_36p	+1	reviewed	missense	c.645	p.R215S	1.000	HMMPfam_CHDNT	HMMPfam_CHDNT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00298,superfamily_Chromo domain-like,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_CHROMO_1,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors
LRP6	4040	genome.wustl.edu	36	12	12195078	12195078	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	12	12195078	12195078	G	C	SNP	LRP6	NM_002336	human	genbank	54_36p	-1	validated	missense	c.2953	p.R985G	0.998	superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1	-	no_errors
LOC729057	729057	genome.wustl.edu	36	22	14503309	14503309	+	RNA	SNP	C	C	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	22	14503309	14503309	C	T	SNP	LOC729057	XR_042044	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.995	-	-	-	no_errors
LRRC48	83450	genome.wustl.edu	36	17	17832018	17832018	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	17	17832018	17832018	G	A	SNP	LRRC48	NM_031294	human	genbank	54_36p	+1	validated	missense	c.325	p.V109M	1.000	superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365	superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365,HMMPfam_LRR_1	-	no_errors
APOB	338	genome.wustl.edu	36	2	21112053	21112053	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	2	21112053	21112053	G	A	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	silent	c.726	p.S242	0.998	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081	-	no_errors
LUZP1	7798	genome.wustl.edu	36	1	23291926	23291926	+	Silent	SNP	T	T	G	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	1	23291926	23291926	T	G	SNP	LUZP1	NM_033631	human	genbank	54_36p	-1	reviewed	silent	c.1416	p.S472	0.283	NULL	HMMPfam_CortBP2	-	no_errors
DSG4	147409	genome.wustl.edu	36	18	27247446	27247446	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	18	27247446	27247446	C	A	SNP	DSG4	NM_177986	human	genbank	54_36p	+1	validated	missense	c.3013	p.Q1005K	0.999	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors
LOC387646	387646	genome.wustl.edu	36	10	27574904	27574904	+	RNA	SNP	C	C	G	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	10	27574904	27574904	C	G	SNP	LOC387646	NR_003525	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.000	-	-	-	pseudogene
EPB41	2035	genome.wustl.edu	36	1	29264233	29264233	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	1	29264233	29264233	T	A	SNP	EPB41	NM_203343	human	genbank	54_36p	+1	validated	missense	c.1893	p.N631K	1.000	NULL	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD	-	no_errors
CHN2	1124	genome.wustl.edu	36	7	29513497	29513497	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	7	29513497	29513497	G	C	SNP	CHN2	NM_004067	human	genbank	54_36p	+1	reviewed	missense	c.1120	p.D374H	1.000	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
MORC2	22880	genome.wustl.edu	36	22	29676425	29676425	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	22	29676425	29676425	C	T	SNP	MORC2	ENST00000397641	human	ensembl	54_36p	-1	known	missense	c.164	p.R55Q	0.994	superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c	superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,HMMPfam_zf-CW	-	no_errors
HECTD1	25831	genome.wustl.edu	36	14	30674524	30674524	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	14	30674524	30674524	G	A	SNP	HECTD1	NM_015382	human	genbank	54_36p	-1	validated	nonsense	c.3163	p.R1055*	1.000	NULL	superfamily_ARM repeat,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Galactose-binding domain-like,HMMPfam_Sad1_UNC,HMMPfam_MIB_HERC2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
LCLAT1	0	genome.wustl.edu	36	2	30716977	30716977	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	2	30716977	30716977	G	C	SNP	LCLAT1	NM_182551	human	genbank	54_36p	+1	validated	missense	c.1233	p.K411N	0.863	NULL	superfamily_Glycerol-3-phosphate (1)-acyltransferase,HMMPfam_Acyltransferase,HMMSmart_SM00563	-	no_errors
uc001msu.1	0	genome.wustl.edu	36	11	31072182	31072182	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	11	31072182	31072182	C	T	SNP	uc001msu.1	ENST00000342355	human	ensembl	54_36p	-1	known	silent	c.966	p.L322	1.000	superfamily_RicinB_like	superfamily_RicinB_like	-	no_errors
RECK	8434	genome.wustl.edu	36	9	36102346	36102346	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	9	36102346	36102346	C	T	SNP	RECK	NM_021111	human	genbank	54_36p	+1	reviewed	nonsense	c.1933	p.Q645*	1.000	superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2,HMMSmart_SM00280,PatternScan_KAZAL	superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2,HMMSmart_SM00280,PatternScan_KAZAL	-	no_errors
LBA1	9881	genome.wustl.edu	36	3	36851386	36851386	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	3	36851386	36851386	T	A	SNP	LBA1	NM_014831	human	genbank	54_36p	-1	validated	missense	c.3752	p.Y1251F	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ADAM9	8754	genome.wustl.edu	36	8	39080285	39080285	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	8	39080285	39080285	C	T	SNP	ADAM9	NM_003816	human	genbank	54_36p	+1	reviewed	missense	c.2369	p.P790L	1.000	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_2"	-	no_errors
ITGA2B	3674	genome.wustl.edu	36	17	39809916	39809916	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	17	39809916	39809916	G	T	SNP	ITGA2B	NM_000419	human	genbank	54_36p	-1	reviewed	missense	c.2254	p.L752M	0.958	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
ZNF790	388536	genome.wustl.edu	36	19	42001483	42001483	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	19	42001483	42001483	C	T	SNP	ZNF790	NM_206894	human	genbank	54_36p	-1	validated	missense	c.1603	p.V535I	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
NCOA3	8202	genome.wustl.edu	36	20	45698691	45698691	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	20	45698691	45698691	C	T	SNP	NCOA3	NM_181659	human	genbank	54_36p	+1	reviewed	silent	c.2154	p.D718	0.254	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_SRC-1,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_Nuc_rec_co-act,HMMPfam_DUF1518	-	no_errors
C10orf71	118461	genome.wustl.edu	36	10	50201009	50201009	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	10	50201009	50201009	A	G	SNP	C10orf71	NM_199459	human	genbank	54_36p	+1	validated	missense	c.413	p.K138R	0.768	NULL	NULL	-	no_errors
ATP8B1	5205	genome.wustl.edu	36	18	53489802	53489802	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	18	53489802	53489802	G	C	SNP	ATP8B1	NM_005603	human	genbank	54_36p	-1	reviewed	missense	c.1828	p.P610A	1.000	superfamily_SSF81665,superfamily_SSF56784,superfamily_SSF81660	superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660	-	no_errors
OR4S2	219431	genome.wustl.edu	36	11	55175090	55175090	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	11	55175090	55175090	G	T	SNP	OR4S2	NM_001004059	human	genbank	54_36p	+1	validated	silent	c.135	p.L45	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DCTN2	10540	genome.wustl.edu	36	12	56215132	56215132	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	12	56215132	56215132	G	T	SNP	DCTN2	NM_006400	human	genbank	54_36p	-1	reviewed	missense	c.352	p.L118M	1.000	HMMPfam_Dynamitin	HMMPfam_Dynamitin	-	no_errors
DST	667	genome.wustl.edu	36	6	56431859	56431859	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	6	56431859	56431859	C	T	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.16397	p.R5466Q	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_SM00243	-	no_errors
GCNT3	9245	genome.wustl.edu	36	15	57697870	57697870	+	Silent	SNP	T	T	C	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	15	57697870	57697870	T	C	SNP	GCNT3	NM_004751	human	genbank	54_36p	+1	reviewed	silent	c.141	p.S47	0.000	NULL	HMMPfam_Branch	-	no_errors
ZFHX3	463	genome.wustl.edu	36	16	71385713	71385713	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	16	71385713	71385713	T	A	SNP	ZFHX3	NM_006885	human	genbank	54_36p	-1	validated	missense	c.8369	p.K2790I	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
CNTNAP4	85445	genome.wustl.edu	36	16	75129546	75129546	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	16	75129546	75129546	G	A	SNP	CNTNAP4	NM_138994	human	genbank	54_36p	+1	validated	missense	c.2809	p.V937M	1.000	superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like	-	no_errors
LMO7	4008	genome.wustl.edu	36	13	75293517	75293517	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	13	75293517	75293517	G	A	SNP	LMO7	NM_005358	human	genbank	54_36p	+1	reviewed	missense	c.1565	p.R522H	0.000	NULL	superfamily_Calponin-homology,HMMSmart_CH,HMMPfam_CH,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
WDR61	80349	genome.wustl.edu	36	15	76362919	76362919	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	15	76362919	76362919	C	T	SNP	WDR61	NM_025234	human	genbank	54_36p	-1	provisional	splice_site	c.829-1	e10-1	1.000	-	-	-	no_errors
GDPD4	220032	genome.wustl.edu	36	11	76617841	76617841	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	11	76617841	76617841	A	C	SNP	GDPD4	NM_182833	human	genbank	54_36p	-1	provisional	splice_site	c.1472+2	e13+2	1.000	-	-	-	no_errors
AQP11	282679	genome.wustl.edu	36	11	76979130	76979130	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	11	76979130	76979130	A	G	SNP	AQP11	NM_173039	human	genbank	54_36p	+1	provisional	missense	c.445	p.S149G	0.072	superfamily_MIP	PatternScan_MIP,superfamily_MIP	-	no_errors
LRIT2	340745	genome.wustl.edu	36	10	85972159	85972159	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	10	85972159	85972159	C	G	SNP	LRIT2	NM_001017924	human	genbank	54_36p	-1	validated	missense	c.1150	p.A384P	0.030	NULL	HMMPfam_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors
PDLIM1	9124	genome.wustl.edu	36	10	96997025	96997025	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	10	96997025	96997025	C	T	SNP	PDLIM1	NM_020992	human	genbank	54_36p	-1	provisional	missense	c.622	p.E208K	1.000	NULL	HMMPfam_PDZ,superfamily_PDZ,HMMSmart_PDZ,HMMSmart_ZM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
LOC643615	643615	genome.wustl.edu	36	2	97620049	97620049	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	2	97620049	97620049	G	T	SNP	LOC643615	XM_001714896	human	genbank	54_36p	-1	model	missense	c.658	p.L220I	0.087	superfamily_HMG-box	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors
CCDC53	51019	genome.wustl.edu	36	12	100957868	100957868	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	12	100957868	100957868	A	G	SNP	CCDC53	ENST00000240079	human	ensembl	54_36p	-1	known	missense	c.343	p.S115P	1.000	HMMPfam_DUF2360	HMMPfam_DUF2360	-	no_errors
PKD2L1	9033	genome.wustl.edu	36	10	102046030	102046030	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	10	102046030	102046030	C	A	SNP	PKD2L1	NM_016112	human	genbank	54_36p	-1	reviewed	missense	c.1195	p.V399L	0.998	HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels	HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels	-	no_errors
TAL2	6887	genome.wustl.edu	36	9	107464804	107464804	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	9	107464804	107464804	C	T	SNP	TAL2	NM_005421	human	genbank	54_36p	+1	reviewed	missense	c.206	p.A69V	0.001	superfamily_HLH_basic	HMMPfam_HLH,superfamily_HLH_basic,HMMSmart_HLH	-	no_errors
RANBP2	5903	genome.wustl.edu	36	2	108748202	108748202	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	2	108748202	108748202	G	T	SNP	RANBP2	NM_006267	human	genbank	54_36p	+1	reviewed	missense	c.4775	p.S1592I	0.514	NULL	superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF50729,HMMSmart_RanBD,HMMPfam_Ran_BP1,HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1	-	no_errors
OAS3	4940	genome.wustl.edu	36	12	111870278	111870278	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	12	111870278	111870278	G	C	SNP	OAS3	NM_006187	human	genbank	54_36p	+1	reviewed	missense	c.1020	p.W340C	0.857	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain	superfamily_Nucleotidyltransferase,PatternScan_25A_SYNTH_1,HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain,PatternScan_25A_SYNTH_2,HMMPfam_NTP_transf_2	-	no_errors
NDST4	64579	genome.wustl.edu	36	4	116216680	116216680	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	4	116216680	116216680	T	A	SNP	NDST4	NM_022569	human	genbank	54_36p	-1	provisional	missense	c.962	p.N321I	1.000	NULL	superfamily_SSF52540,HMMPfam_Sulfotransfer_1	-	no_errors
LRRC58	116064	genome.wustl.edu	36	3	121536445	121536445	+	Silent	SNP	A	A	C	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	3	121536445	121536445	A	C	SNP	LRRC58	NM_001099678	human	genbank	54_36p	-1	validated	silent	c.861	p.L287	0.998	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP	-	no_errors
CPA2	1358	genome.wustl.edu	36	7	129716743	129716743	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	7	129716743	129716743	C	T	SNP	CPA2	NM_001869	human	genbank	54_36p	+1	reviewed	missense	c.1174	p.R392C	0.972	superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14	superfamily_Prot_inh_propept,HMMPfam_Propep_M14,superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2	-	no_errors
TG	7038	genome.wustl.edu	36	8	133968669	133968669	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	8	133968669	133968669	G	A	SNP	TG	NM_003235	human	genbank	54_36p	+1	validated	missense	c.1870	p.G624R	1.000	HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin type-1 domain,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors
RAB3GAP1	22930	genome.wustl.edu	36	2	135627917	135627917	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	2	135627917	135627917	G	T	SNP	RAB3GAP1	NM_012233	human	genbank	54_36p	+1	validated	splice_site	c.2289+1	e19+1	1.000	-	-	-	no_errors
PCDHB3	56132	genome.wustl.edu	36	5	140462458	140462458	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	5	140462458	140462458	G	A	SNP	PCDHB3	NM_018937	human	genbank	54_36p	+1	reviewed	missense	c.2041	p.A681T	0.001	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCDHGA10	56106	genome.wustl.edu	36	5	140774714	140774714	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	5	140774714	140774714	G	T	SNP	PCDHGA10	NM_018913	human	genbank	54_36p	+1	reviewed	silent	c.1788	p.V596	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
LOC646347	646347	genome.wustl.edu	36	1	159132539	159132539	+	RNA	SNP	C	C	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	1	159132539	159132539	C	A	SNP	LOC646347	XR_017680	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.097	-	-	-	pseudogene
IGFN1	91156	genome.wustl.edu	36	1	199449361	199449361	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	1	199449361	199449361	A	G	SNP	IGFN1	NM_178275	human	genbank	54_36p	+1	validated	missense	c.197	p.K66R	0.000	NULL	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_IGc2	-	no_errors
AGAP1	116987	genome.wustl.edu	36	2	236323761	236323761	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	2	236323761	236323761	G	A	SNP	AGAP1	NM_001037131	human	genbank	54_36p	+1	validated	missense	c.563	p.R188K	1.000	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Miro,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
COL6A3	1293	genome.wustl.edu	36	2	237939393	237939393	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	2	237939393	237939393	C	A	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	missense	c.5525	p.G1842V	0.996	superfamily_vWA-like,HMMSmart_SM00327	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors
LOC645884	645884	genome.wustl.edu	36	1	238242796	238242796	+	RNA	SNP	G	G	T	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	1	238242796	238242796	G	T	SNP	LOC645884	XR_017475	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
TP53	7157	genome.wustl.edu	36	17	7519168	7519169	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	17	7519168	7519169	-	G	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.487_486	p.Y162fs	1.000:0.999	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
NF1	4763	genome.wustl.edu	36	17	26611488	26611516	+	Splice_Site	DEL	TTCTAATGACTTTGCATTTTTGAAGGTTT	TTCTAATGACTTTGCATTTTTGAAGGTTT	-	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	TTCTAATGACTTTGCATTTTTGAAGGTTT	TTCTAATGACTTTGCATTTTTGAAGGTTT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	17	26611488	26611516	TTCTAATGACTTTGCATTTTTGAAGGTTT	-	DEL	NF1	NM_001042492	human	genbank	54_36p	+1	reviewed	splice_site_del	c.4431-25_4431-1	e34-1	0.487:0.544:0.584:0.651:0.695:0.697:0.680:0.621:0.617:0.639:0.872:0.871:0.714:0.283:0.299:0.592:0.806:0.850:0.860:0.730:0.448:0.345:0.438:1.000:1.000:1.000:1.000:1.000:1.000	-	-	(deletion:intron[26610274,26611512], cds_exon[26611513,26611659])	no_errors
MS4A14	84689	genome.wustl.edu	36	11	59940401	59940408	+	Frame_Shift_Del	DEL	TCAGAAGT	TCAGAAGT	-	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	TCAGAAGT	TCAGAAGT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	11	59940401	59940408	TCAGAAGT	-	DEL	MS4A14	NM_032597	human	genbank	54_36p	+1	validated	frame_shift_del	c.1384_1391	p.S462fs	0.538:0.858:0.888:0.947:0.949:0.946:0.937:0.797	NULL	HMMPfam_CD20	(deletion:cds_exon[59939486,59941057])	no_errors
TLN2	83660	genome.wustl.edu	36	15	60801869	60801887	+	Frame_Shift_Del	DEL	CCAAAGCCGCAGTGCCCAC	CCAAAGCCGCAGTGCCCAC	-	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	CCAAAGCCGCAGTGCCCAC	CCAAAGCCGCAGTGCCCAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	15	60801869	60801887	CCAAAGCCGCAGTGCCCAC	-	DEL	TLN2	NM_015059	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.3017_3035	p.K1007fs	1.000:0.997:1.000:1.000:1.000:1.000:0.996:0.237:0.299:0.336:0.068:0.997:1.000:0.993:1.000:1.000:0.986:0.998:0.994	superfamily_SSF109885	PatternScan_FERM_1,HMMSmart_B41,HMMPfam_FERM_N,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_Talin_cent,HMMPfam_Talin_middle,superfamily_SSF109885,HMMPfam_VBS,HMMSmart_ILWEQ,HMMPfam_I_LWEQ	(deletion:cds_exon[60801844,60801978])	no_errors
ENSG00000214434	0	genome.wustl.edu	36	15	88628885	88628886	+	Splice_Site	INS	-	-	TTTG	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	15	88628885	88628886	-	TTTG	INS	ENSG00000214434	ENST00000398317	human	ensembl	54_36p	-1	novel	splice_site_ins	c.NULL	NULL	0.022:0.017	-	-	-	no_coding_region:pseudogene
ZHX1	11244	genome.wustl.edu	36	8	124336050	124336083	+	Frame_Shift_Del	DEL	TTTCTGCAGTAGGCTGAGCAGCAGGTACCTGACT	TTTCTGCAGTAGGCTGAGCAGCAGGTACCTGACT	-	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	TTTCTGCAGTAGGCTGAGCAGCAGGTACCTGACT	TTTCTGCAGTAGGCTGAGCAGCAGGTACCTGACT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	8	124336050	124336083	TTTCTGCAGTAGGCTGAGCAGCAGGTACCTGACT	-	DEL	ZHX1	NM_001017926	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1318_1285	p.S429fs	0.816:0.792:0.965:0.964:0.512:0.493:0.010:0.000:0.000:0.000:0.071:1.000:1.000:1.000:1.000:0.996:0.901:0.993:0.940:0.871:0.873:0.752:0.706:0.703:0.682:0.596:0.898:0.973:0.998:1.000:1.000:0.998:0.998:0.998	NULL	PatternScan_ZINC_FINGER_C2H2_1,PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,HMMSmart_HOX,superfamily_Homeodomain_like,HMMPfam_Homeobox	(deletion:cds_exon[124334746,124337367])	no_errors
SF3B4	10262	genome.wustl.edu	36	1	148165719	148165720	+	Frame_Shift_Ins	INS	-	-	GT	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	1	148165719	148165720	-	GT	INS	SF3B4	NM_005850	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.126_125	p.H43fs	0.976:1.000	HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1	HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1	-	no_errors
RFWD2	64326	genome.wustl.edu	36	1	174225224	174225232	+	In_Frame_Del	DEL	AGTGGACAC	AGTGGACAC	-	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	AGTGGACAC	AGTGGACAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	1	174225224	174225232	AGTGGACAC	-	DEL	RFWD2	NM_022457	human	genbank	54_36p	-1	validated	in_frame_del	c.1744_1736	p.CVH579in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	(deletion:cds_exon[174225121,174225238])	no_errors
SP140	11262	genome.wustl.edu	36	2	230884096	230884113	+	Splice_Site	DEL	GCCTCTTTCTTTTGCAGA	GCCTCTTTCTTTTGCAGA	-	novel	unknown	TCGA-61-1895-01A-01W-0639-09	TCGA-61-1895-11A-01W-0639-09	GCCTCTTTCTTTTGCAGA	GCCTCTTTCTTTTGCAGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13b583b0-b80c-4a77-9170-78ab603b1c00	284bcfd0-a8f3-49e1-a9d6-e442ce603bf2	2	230884096	230884113	GCCTCTTTCTTTTGCAGA	-	DEL	SP140	NM_007237	human	genbank	54_36p	+1	validated	splice_site_del	c.2284-17_2284-1	e25-1	0.002:0.002:0.004:0.011:0.083:0.288:0.526:0.787:0.867:0.937:0.959:0.980:0.986:0.993:0.998:1.000:1.000:1.000	-	-	(deletion:intron[230883811,230884112], cds_exon[230884113,230884190])	no_errors
