Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ATP6	4508	genome.wustl.edu	36	MT	9101	9101	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	MT	9101	9101	A	G	SNP	MT-ATP6	ENST00000361899	human	ensembl	54_36p	+1	known	missense	c.574	p.I192V	NULL	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A,PatternScan_ATPASE_A	-	no_errors
TRNT1	51095	genome.wustl.edu	36	3	3161274	3161274	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	3	3161274	3161274	A	G	SNP	TRNT1	NM_182916	human	genbank	54_36p	+1	validated	missense	c.488	p.D163G	1.000	superfamily_Nucleotidyltransferase,HMMPfam_PolyA_pol	superfamily_Nucleotidyltransferase,HMMPfam_PolyA_pol,superfamily_Poly A polymerase C-terminal region-like	-	no_errors
LOC158345	158345	genome.wustl.edu	36	9	7468285	7468285	+	RNA	SNP	G	G	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	9	7468285	7468285	G	A	SNP	LOC158345	XR_017130	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC727815	727815	genome.wustl.edu	36	12	7483128	7483128	+	RNA	SNP	C	C	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	12	7483128	7483128	C	T	SNP	LOC727815	XR_015164	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.008	-	-	-	no_errors
PTPRM	5797	genome.wustl.edu	36	18	8103615	8103615	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	18	8103615	8103615	C	A	SNP	PTPRM	NM_001105244	human	genbank	54_36p	+1	reviewed	missense	c.1988	p.A663E	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
OR2Z1	284383	genome.wustl.edu	36	19	8702727	8702727	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	19	8702727	8702727	G	T	SNP	OR2Z1	NM_001004699	human	genbank	54_36p	+1	provisional	missense	c.337	p.V113F	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR2Z1	284383	genome.wustl.edu	36	19	8702880	8702880	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	19	8702880	8702880	C	T	SNP	OR2Z1	NM_001004699	human	genbank	54_36p	+1	provisional	silent	c.490	p.L164	0.006	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
LDLR	3949	genome.wustl.edu	36	19	11085402	11085402	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	19	11085402	11085402	C	A	SNP	LDLR	NM_000527	human	genbank	54_36p	+1	reviewed	missense	c.1550	p.S517Y	0.355	superfamily_YWTD domain,HMMPfam_Ldl_recept_b,HMMSmart_SM00135	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	no_errors
ZNF20	7568	genome.wustl.edu	36	19	12105149	12105149	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	19	12105149	12105149	C	T	SNP	ZNF20	NM_021143	human	genbank	54_36p	-1	validated	silent	c.852	p.E284	0.006	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
FRMPD4	9758	genome.wustl.edu	36	X	12618249	12618249	+	Silent	SNP	C	C	G	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	X	12618249	12618249	C	G	SNP	FRMPD4	NM_014728	human	genbank	54_36p	+1	validated	silent	c.696	p.T232	0.913	HMMSmart_B41	PatternScan_WW_DOMAIN_1,PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors
CAPN7	23473	genome.wustl.edu	36	3	15257287	15257287	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	3	15257287	15257287	T	A	SNP	CAPN7	NM_014296	human	genbank	54_36p	+1	reviewed	missense	c.1575	p.D525E	1.000	superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2	PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,HMMSmart_MIT,HMMPfam_MIT,superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2,superfamily_Peptidase_C2,HMMPfam_Calpain_III,HMMSmart_calpain_III	-	no_errors
OR4M1	441670	genome.wustl.edu	36	14	19318757	19318757	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	14	19318757	19318757	G	A	SNP	OR4M1	NM_001005500	human	genbank	54_36p	+1	provisional	missense	c.436	p.A146T	0.002	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ENSG00000187928	0	genome.wustl.edu	36	19	20104313	20104313	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	19	20104313	20104313	A	T	SNP	ENSG00000187928	ENST00000339844	human	ensembl	54_36p	-1	known	nonsense	c.87	p.Y29*	0.537	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB	-	no_stop_codon
HERC2P2	400322	genome.wustl.edu	36	15	20882010	20882010	+	RNA	SNP	C	A	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	15	20882010	20882010	C	A	SNP	HERC2P2	NR_002824	human	genbank	54_36p	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
ENSG00000211782	0	genome.wustl.edu	36	14	21335756	21335756	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	14	21335756	21335756	C	T	SNP	ENSG00000211782	ENST00000390430	human	ensembl	54_36p	+1	known	missense	c.199	p.L67F	0.923	HMMPfam_V-set,superfamily_SSF48726	HMMPfam_V-set,superfamily_SSF48726	-	no_stop_codon:bad_bp_length_for_coding_region
LOC100132820	0	genome.wustl.edu	36	17	21828894	21828894	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	17	21828894	21828894	C	G	SNP	LOC100132820	XM_001716790	human	genbank	54_36p	+1	model	missense	c.151	p.H51D	0.000	NULL	NULL	-	no_errors
SS18	6760	genome.wustl.edu	36	18	21921500	21921500	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	18	21921500	21921500	C	A	SNP	SS18	NM_001007559	human	genbank	54_36p	-1	validated	missense	c.109	p.D37Y	1.000	HMMPfam_SSXT	HMMPfam_SSXT	-	no_errors
OSBPL3	26031	genome.wustl.edu	36	7	24840697	24840697	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	7	24840697	24840697	C	T	SNP	OSBPL3	NM_015550	human	genbank	54_36p	-1	reviewed	missense	c.1679	p.C560Y	1.000	HMMPfam_Oxysterol_BP	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors
RARB	5915	genome.wustl.edu	36	3	25477773	25477773	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	3	25477773	25477773	C	A	SNP	RARB	NM_000965	human	genbank	54_36p	+1	reviewed	nonsense	c.243	p.C81*	1.000	superfamily_SSF57716,HMMSmart_ZnF_C4,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1	superfamily_SSF57716,HMMSmart_ZnF_C4,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors
HIST1H1C	3006	genome.wustl.edu	36	6	26164294	26164294	+	Silent	SNP	C	C	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	6	26164294	26164294	C	A	SNP	HIST1H1C	NM_005319	human	genbank	54_36p	-1	reviewed	silent	c.342	p.G114	0.094	NULL	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Linker_histone"	-	no_errors
LOC646755	646755	genome.wustl.edu	36	13	30014522	30014522	+	RNA	SNP	T	C	C	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	13	30014522	30014522	T	C	SNP	LOC646755	XR_037386	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
TEX15	56154	genome.wustl.edu	36	8	30823325	30823325	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	8	30823325	30823325	G	T	SNP	TEX15	NM_031271	human	genbank	54_36p	-1	validated	missense	c.2751	p.S917R	0.732	NULL	NULL	-	no_errors
DNMT3B	1789	genome.wustl.edu	36	20	30848457	30848457	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	20	30848457	30848457	T	G	SNP	DNMT3B	ENST00000375623	human	ensembl	54_36p	+1	known	missense	c.1625	p.L542R	0.000	NULL	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293	-	no_start_codon
CCL15	6359	genome.wustl.edu	36	17	31352614	31352614	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	17	31352614	31352614	G	A	SNP	CCL15	NM_032965	human	genbank	54_36p	-1	reviewed	missense	c.31	p.L11F	0.069	NULL	superfamily_Chemokine_IL8,HMMPfam_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CC	-	no_errors
C11orf41	25758	genome.wustl.edu	36	11	33521992	33521992	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	11	33521992	33521992	A	G	SNP	C11orf41	NM_012194	human	genbank	54_36p	+1	validated	silent	c.1416	p.A472	0.003	NULL	NULL	-	no_errors
ENSG00000209785	0	genome.wustl.edu	36	12	34209765	34209765	+	RNA	SNP	G	G	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	12	34209765	34209765	G	A	SNP	ENSG00000209785	ENST00000387050	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.998	-	-	-	pseudogene
KIF21A	55605	genome.wustl.edu	36	12	38020344	38020344	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	12	38020344	38020344	T	A	SNP	KIF21A	NM_017641	human	genbank	54_36p	-1	validated	nonsense	c.2161	p.R721*	1.000	superfamily_WD40 repeat-like	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40 repeat-like,superfamily_Prefoldin,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
ADAM32	203102	genome.wustl.edu	36	8	39113365	39113365	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	8	39113365	39113365	G	T	SNP	ADAM32	NM_145004	human	genbank	54_36p	+1	validated	missense	c.171	p.E57D	0.091	HMMPfam_Pep_M12B_propep	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_2"	-	no_errors
EFTUD2	9343	genome.wustl.edu	36	17	40285354	40285354	+	Silent	SNP	C	C	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	17	40285354	40285354	C	A	SNP	EFTUD2	NM_004247	human	genbank	54_36p	-1	validated	silent	c.2664	p.R888	1.000	HMMPfam_EFG_C,superfamily_EFG_III_V	PatternScan_EFACTOR_GTP,superfamily_SSF52540,HMMPfam_GTP_EFTU,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,superfamily_EFG_III_V,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_EFG_IV,HMMPfam_EFG_C	-	no_errors
NPEPPS	9520	genome.wustl.edu	36	17	43019703	43019703	+	Silent	SNP	T	T	G	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	17	43019703	43019703	T	G	SNP	NPEPPS	NM_006310	human	genbank	54_36p	+1	reviewed	silent	c.957	p.V319	1.000	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"	"superfamily_Leukotriene A4 hydrolase N-terminal domain,HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
KCNK6	9424	genome.wustl.edu	36	19	43509131	43509131	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	19	43509131	43509131	G	T	SNP	KCNK6	NM_004823	human	genbank	54_36p	+1	reviewed	silent	c.381	p.A127	0.127	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2	-	no_errors
SLC12A5	57468	genome.wustl.edu	36	20	44117017	44117017	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	20	44117017	44117017	G	A	SNP	SLC12A5	NM_020708	human	genbank	54_36p	+1	reviewed	missense	c.2735	p.R912H	1.000	NULL	HMMPfam_AA_permease	-	no_errors
RHOA	387	genome.wustl.edu	36	3	49372774	49372774	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	3	49372774	49372774	C	A	SNP	RHOA	NM_001664	human	genbank	54_36p	-1	validated	missense	c.454	p.G152C	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00174	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00174	-	no_errors
ITGA2	3673	genome.wustl.edu	36	5	52413255	52413255	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	5	52413255	52413255	G	A	SNP	ITGA2	NM_002203	human	genbank	54_36p	+1	reviewed	missense	c.3116	p.S1039N	0.992	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
OR10P1	121130	genome.wustl.edu	36	12	54317785	54317785	+	Silent	SNP	C	C	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	12	54317785	54317785	C	A	SNP	OR10P1	NM_206899	human	genbank	54_36p	+1	provisional	silent	c.843	p.V281	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
CES7	221223	genome.wustl.edu	36	16	54438096	54438096	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	16	54438096	54438096	C	G	SNP	CES7	NM_145024	human	genbank	54_36p	-1	validated	splice_site	c.1347-1	e12-1	0.996	-	-	-	no_errors
EXOC1	55763	genome.wustl.edu	36	4	56463417	56463417	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	4	56463417	56463417	A	C	SNP	EXOC1	NM_001024924	human	genbank	54_36p	+1	reviewed	missense	c.2488	p.K830Q	1.000	HMMPfam_Sec3	HMMPfam_Sec3	-	no_errors
OR5B2	390190	genome.wustl.edu	36	11	57947239	57947239	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	11	57947239	57947239	G	T	SNP	OR5B2	NM_001005566	human	genbank	54_36p	-1	provisional	silent	c.72	p.P24	0.039	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
KIR2DL3	3804	genome.wustl.edu	36	19	59955760	59955760	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	19	59955760	59955760	G	C	SNP	KIR2DL3	NM_015868	human	genbank	54_36p	+1	reviewed	missense	c.1003	p.E335Q	0.011	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig	-	no_errors
NCF1B	654816	genome.wustl.edu	36	7	72281634	72281634	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	7	72281634	72281634	G	C	SNP	NCF1B	ENST00000338578	human	ensembl	54_36p	+1	known	silent	c.552	p.V184	1.000	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3	superfamily_PX,HMMPfam_PX,HMMSmart_PX,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,HMMPfam_p47_phox_C	-	no_errors
USP33	23032	genome.wustl.edu	36	1	77972665	77972665	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	1	77972665	77972665	C	A	SNP	USP33	NM_015017	human	genbank	54_36p	-1	validated	missense	c.572	p.G191V	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1	HMMSmart_SM00290,HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,HMMSmart_SM00695	-	no_errors
LOC642546	0	genome.wustl.edu	36	X	79714046	79714046	+	RNA	SNP	G	G	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	X	79714046	79714046	G	A	SNP	LOC642546	XR_038841	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.939	-	-	-	pseudogene
ELMOD3	0	genome.wustl.edu	36	2	85471398	85471398	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	2	85471398	85471398	G	A	SNP	ELMOD3	ENST00000393852	human	ensembl	54_36p	+1	known	silent	c.948	p.L316	0.846	NULL	HMMPfam_ELMO_CED12	-	no_errors
MIRN1179	0	genome.wustl.edu	36	15	86952351	86952351	+	RNA	SNP	G	G	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	15	86952351	86952351	G	T	SNP	MIRN1179	ENST00000408703	human	ensembl	54_36p	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors
RGPD4	285190	genome.wustl.edu	36	2	107844080	107844080	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	2	107844080	107844080	A	G	SNP	RGPD4	ENST00000354986	human	ensembl	54_36p	+1	known	splice_site	c.1921-2	e14-2	0.993	-	-	-	no_errors
GUCY2F	2986	genome.wustl.edu	36	X	108560277	108560277	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	X	108560277	108560277	T	A	SNP	GUCY2F	NM_001522	human	genbank	54_36p	-1	reviewed	missense	c.1706	p.D569V	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
AMPD2	271	genome.wustl.edu	36	1	109972270	109972270	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	1	109972270	109972270	C	T	SNP	AMPD2	NM_004037	human	genbank	54_36p	+1	validated	missense	c.1285	p.H429Y	1.000	superfamily_Metallo-dependent hydrolases,HMMPfam_A_deaminase	superfamily_Metallo-dependent hydrolases,HMMPfam_A_deaminase,PatternScan_A_DEAMINASE	-	no_errors
TMCO3	55002	genome.wustl.edu	36	13	113200781	113200781	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	13	113200781	113200781	G	A	SNP	TMCO3	NM_017905	human	genbank	54_36p	+1	validated	missense	c.568	p.A190T	1.000	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
TECTA	7007	genome.wustl.edu	36	11	120506014	120506014	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	11	120506014	120506014	G	A	SNP	TECTA	NM_005422	human	genbank	54_36p	+1	reviewed	missense	c.2825	p.R942H	1.000	HMMPfam_C8	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00215,HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_FA58C_2,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1,superfamily_EGF/Laminin	-	no_errors
FAM3C	10447	genome.wustl.edu	36	7	120777773	120777773	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	7	120777773	120777773	C	T	SNP	FAM3C	NM_001040020	human	genbank	54_36p	-1	reviewed	missense	c.662	p.C221Y	1.000	NULL	NULL	-	no_errors
CNTNAP5	129684	genome.wustl.edu	36	2	125121910	125121910	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	2	125121910	125121910	G	A	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	+1	reviewed	missense	c.1979	p.S660N	0.994	superfamily_ConA_like_lec_gl	PatternScan_FA58C_1,PatternScan_FIBRIN_AG_C_DOMAIN,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_2,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMSmart_EGF,HMMPfam_EGF,superfamily_Fibrinogen_a/b/g_C	-	no_errors
LOC653269	653269	genome.wustl.edu	36	2	130937852	130937852	+	Silent	SNP	C	C	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	2	130937852	130937852	C	A	SNP	LOC653269	XM_928585	human	genbank	54_36p	-1	model	silent	c.2235	p.G745	1.000	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
TMEM163	81615	genome.wustl.edu	36	2	134930768	134930768	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	2	134930768	134930768	T	G	SNP	TMEM163	NM_030923	human	genbank	54_36p	-1	validated	missense	c.859	p.M287L	1.000	NULL	NULL	-	no_errors
PCDHB4	56131	genome.wustl.edu	36	5	140482205	140482205	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	5	140482205	140482205	G	A	SNP	PCDHB4	NM_018938	human	genbank	54_36p	+1	reviewed	silent	c.441	p.P147	0.303	superfamily_Cadherin,HMMPfam_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	-	no_errors
KCNK9	51305	genome.wustl.edu	36	8	140700412	140700412	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	8	140700412	140700412	C	T	SNP	KCNK9	NM_016601	human	genbank	54_36p	-1	reviewed	missense	c.396	p.M132I	1.000	superfamily_SSF81324,HMMPfam_Ion_trans_2	superfamily_SSF81324,HMMPfam_Ion_trans_2	-	no_errors
SSPO	23145	genome.wustl.edu	36	7	149148974	149148974	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	7	149148974	149148974	C	T	SNP	SSPO	NM_198455	human	genbank	54_36p	+1	provisional	missense	c.12397	p.P4133S	0.997	NULL	HMMSmart_SM00216,HMMPfam_VWD,superfamily_LDL receptor-like module,HMMSmart_SM00192,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Serine proterase inhibitors,HMMSmart_SM00214,HMMSmart_SM00215,HMMPfam_VWC,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,HMMPfam_Ldl_recept_a,PatternScan_LDLRA_1,HMMPfam_TIL,superfamily_PMP inhibitors,PatternScan_EGF_1,PatternScan_VWFC_1,PatternScan_GLYCO_HORMONE_BETA_1	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
GABRA6	2559	genome.wustl.edu	36	5	161049829	161049829	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	5	161049829	161049829	A	T	SNP	GABRA6	NM_000811	human	genbank	54_36p	+1	reviewed	missense	c.718	p.M240L	1.000	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,superfamily_Neurotransmitter-gated ion-channel transmembrane pore	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors
LRRC52	440699	genome.wustl.edu	36	1	163799514	163799514	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	1	163799514	163799514	C	T	SNP	LRRC52	NM_001005214	human	genbank	54_36p	+1	validated	silent	c.771	p.A257	0.819	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1	-	no_errors
TCP10	6953	genome.wustl.edu	36	6	167709503	167709503	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	6	167709503	167709503	G	T	SNP	TCP10	NM_004610	human	genbank	54_36p	-1	validated	missense	c.629	p.P210Q	0.014	HMMPfam_Tcp10_C	HMMPfam_Tcp10_C	-	no_errors
HSPD1	3329	genome.wustl.edu	36	2	198071746	198071746	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	2	198071746	198071746	C	T	SNP	HSPD1	NM_002156	human	genbank	54_36p	-1	reviewed	silent	c.72	p.R24	0.986	NULL	superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,superfamily_SSF54849,superfamily_SSF52029,PatternScan_CHAPERONINS_CPN60	-	no_errors
TLR5	7100	genome.wustl.edu	36	1	221352198	221352198	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	1	221352198	221352198	C	T	SNP	TLR5	NM_003268	human	genbank	54_36p	-1	validated	missense	c.799	p.A267T	0.001	superfamily_SSF52058	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR	-	no_errors
DOCK10	55619	genome.wustl.edu	36	2	225379152	225379152	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	2	225379152	225379152	G	C	SNP	DOCK10	NM_014689	human	genbank	54_36p	-1	validated	missense	c.3749	p.T1250R	0.999	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7514728	7514728	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	17	7514728	7514728	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1024	p.R342fs	0.397	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7514652,7514758])	no_errors
LOC100133546	0	genome.wustl.edu	36	9	34651174	34651204	+	RNA	DEL	CAGGGTATTAGTATTAGTACTAATACTCTTC	CAGGGTATTAGTATTAGTACTAATACTCTTC	-	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	CAGGGTATTAGTATTAGTACTAATACTCTTC	CAGGGTATTAGTATTAGTACTAATACTCTTC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	9	34651174	34651204	CAGGGTATTAGTATTAGTACTAATACTCTTC	-	DEL	LOC100133546	XR_039196	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.004:0.010:0.016:0.021:0.026:0.030:0.033:0.035:0.037:0.039:0.039:0.039:0.045:0.046:0.048:0.049:0.050:0.050:0.050:0.050:0.057:0.078:0.092:0.129:0.155:0.181:0.205:0.228:0.249:0.322:0.395	-	-	(deletion:rna[34646796,34651770])	pseudogene
ADCK2	90956	genome.wustl.edu	36	7	140020034	140020034	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	7	140020034	140020034	C	-	DEL	ADCK2	NM_052853	human	genbank	54_36p	+1	validated	frame_shift_del	c.435	p.Y145fs	0.994	NULL	HMMPfam_ABC1,superfamily_Protein kinase-like (PK-like)	(deletion:cds_exon[140019600,140020532])	no_errors
IRF2	3660	genome.wustl.edu	36	4	185557208	185557216	+	In_Frame_Del	DEL	CAGATGGGA	CAGATGGGA	-	novel	unknown	TCGA-61-1901-01A-01W-0639-09	TCGA-61-1901-11A-01W-0640-09	CAGATGGGA	CAGATGGGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14779002-3885-4e83-9c90-b5cc9b90a5f1	6393bf53-b679-445c-9c6f-55a90a252a01	4	185557208	185557216	CAGATGGGA	-	DEL	IRF2	NM_002199	human	genbank	54_36p	-1	reviewed	in_frame_del	c.549_541	p.SHL181in_frame_del	0.975:0.995:0.996:0.990:0.994:0.987:0.830:0.997:0.999	NULL	"HMMSmart_SM00348,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_IRF,PatternScan_IRF"	(deletion:cds_exon[185557063,185557227])	no_errors
