Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ATP6	4508	genome.wustl.edu	36	MT	8744	8744	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	MT	8744	8744	G	A	SNP	MT-ATP6	ENST00000361899	human	ensembl	54_36p	+1	known	missense	c.217	p.V73M	NULL	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A,PatternScan_ATPASE_A	-	no_errors
ZDHHC11B	653082	genome.wustl.edu	36	5	786902	786902	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	5	786902	786902	T	G	SNP	ZDHHC11B	XM_926053	human	genbank	54_36p	-1	model	missense	c.988	p.T330P	0.000	NULL	HMMPfam_zf-DHHC	-	no_errors
NUP98	4928	genome.wustl.edu	36	11	3661233	3661233	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	11	3661233	3661233	G	T	SNP	NUP98	NM_016320	human	genbank	54_36p	-1	reviewed	missense	c.4691	p.A1564D	1.000	NULL	superfamily_SSF88633,HMMPfam_Nucleoporin2,superfamily_Peptidase_S59	-	no_errors
FARS2	10667	genome.wustl.edu	36	6	5716609	5716609	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	6	5716609	5716609	A	T	SNP	FARS2	NM_006567	human	genbank	54_36p	+1	reviewed	missense	c.1304	p.Q435L	0.992	superfamily_Fdx_AntiC_bd,HMMPfam_FDX-ACB	superfamily_SSF55681,HMMPfam_tRNA-synt_2d,superfamily_Fdx_AntiC_bd,HMMPfam_FDX-ACB	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	T	T	rs28934575	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	17	7518273	7518273	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.733	p.G245S	0.996	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
GDF3	9573	genome.wustl.edu	36	12	7734120	7734120	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	12	7734120	7734120	T	C	SNP	GDF3	NM_020634	human	genbank	54_36p	-1	reviewed	missense	c.716	p.N239S	0.975	NULL	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors
OR5E1P	0	genome.wustl.edu	36	11	7827210	7827210	+	Silent	SNP	C	T	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	11	7827210	7827210	C	T	SNP	OR5E1P	ENST00000305754	human	ensembl	54_36p	+1	known	silent	c.37	p.L13	0.980	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,superfamily_SSF81321	-	no_errors
OR7G2	390882	genome.wustl.edu	36	19	9074963	9074963	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	19	9074963	9074963	A	C	SNP	OR7G2	NM_001005193	human	genbank	54_36p	-1	provisional	missense	c.20	p.L7R	0.000	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ZNF559	84527	genome.wustl.edu	36	19	9312831	9312831	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	19	9312831	9312831	C	G	SNP	ZNF559	NM_032497	human	genbank	54_36p	+1	provisional	missense	c.214	p.Q72E	0.011	HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC400011	400011	genome.wustl.edu	36	12	16444841	16444841	+	RNA	SNP	A	A	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	12	16444841	16444841	A	T	SNP	LOC400011	XR_016968	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
BZW2	28969	genome.wustl.edu	36	7	16704334	16704334	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	7	16704334	16704334	A	T	SNP	BZW2	NM_014038	human	genbank	54_36p	+1	provisional	missense	c.1106	p.K369I	1.000	superfamily_ARM repeat,HMMSmart_SM00515,HMMPfam_W2	superfamily_ARM repeat,HMMSmart_SM00515,HMMPfam_W2	-	no_errors
TMC5	79838	genome.wustl.edu	36	16	19416784	19416784	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	16	19416784	19416784	G	T	SNP	TMC5	NM_001105248	human	genbank	54_36p	+1	validated	missense	c.3016	p.A1006S	0.000	NULL	HMMPfam_TMC	-	no_errors
GPRC5B	51704	genome.wustl.edu	36	16	19791072	19791072	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	16	19791072	19791072	G	T	SNP	GPRC5B	NM_016235	human	genbank	54_36p	-1	reviewed	missense	c.597	p.D199E	1.000	HMMPfam_7tm_3	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_7tm_3	-	no_errors
LOC387646	387646	genome.wustl.edu	36	10	27576461	27576461	+	RNA	SNP	C	C	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	10	27576461	27576461	C	T	SNP	LOC387646	NR_003525	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.042	-	-	-	pseudogene
EOMES	8320	genome.wustl.edu	36	3	27734229	27734229	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	3	27734229	27734229	G	T	SNP	EOMES	NM_005442	human	genbank	54_36p	-1	reviewed	missense	c.1397	p.P466H	1.000	NULL	HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors
THOC5	8563	genome.wustl.edu	36	22	28243092	28243092	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	22	28243092	28243092	G	C	SNP	THOC5	NM_001002877	human	genbank	54_36p	-1	validated	missense	c.1607	p.T536S	1.000	NULL	HMMPfam_FimP	-	no_errors
LOC390561	390561	genome.wustl.edu	36	15	28896033	28896033	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	15	28896033	28896033	G	A	SNP	LOC390561	XM_001726958	human	genbank	54_36p	+1	model	silent	c.3228	p.G1076	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
BRCA2	675	genome.wustl.edu	36	13	31812221	31812221	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	13	31812221	31812221	A	G	SNP	BRCA2	NM_000059	human	genbank	54_36p	+1	reviewed	missense	c.5729	p.N1910S	0.000	NULL	HMMPfam_BRCA2,superfamily_BRCA2_helical,HMMPfam_BRCA-2_helical,superfamily_Nucleic_acid_OB,HMMPfam_BRCA-2_OB1,HMMPfam_Tower,superfamily_SSF81878,HMMPfam_BRCA-2_OB3	-	no_errors
MTMR12	54545	genome.wustl.edu	36	5	32279398	32279398	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	5	32279398	32279398	C	T	SNP	MTMR12	NM_001040446	human	genbank	54_36p	-1	reviewed	nonsense	c.1086	p.W362*	1.000	superfamily_(Phosphotyrosine protein) phosphatases II	superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related	-	no_errors
LOC100130041	0	genome.wustl.edu	36	16	34581126	34581126	+	RNA	SNP	A	A	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	16	34581126	34581126	A	T	SNP	LOC100130041	XR_037947	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.977	-	-	-	pseudogene
AGXT2	64902	genome.wustl.edu	36	5	35069395	35069395	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	5	35069395	35069395	C	G	SNP	AGXT2	NM_031900	human	genbank	54_36p	-1	reviewed	missense	c.602	p.S201T	0.999	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_3	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_3,PatternScan_AA_TRANSFER_CLASS_3	-	no_errors
TGM4	7047	genome.wustl.edu	36	3	44918149	44918149	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	3	44918149	44918149	G	C	SNP	TGM4	NM_003241	human	genbank	54_36p	+1	validated	missense	c.787	p.V263L	0.435	superfamily_SSF54001,HMMSmart_TGc	superfamily_Ig_E-set,HMMPfam_Transglut_N,superfamily_SSF54001,HMMSmart_TGc,PatternScan_TRANSGLUTAMINASES,HMMPfam_Transglut_core,superfamily_Transglut_C,HMMPfam_Transglut_C	-	no_errors
CTGLF10P	653234	genome.wustl.edu	36	10	45507613	45507613	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	10	45507613	45507613	G	T	SNP	CTGLF10P	ENST00000406820	human	ensembl	54_36p	+1	known	splice_site	c.NULL	NULL	0.999	-	-	-	no_coding_region:pseudogene
ZNF41	7592	genome.wustl.edu	36	X	47193508	47193508	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	X	47193508	47193508	G	T	SNP	ZNF41	NM_007130	human	genbank	54_36p	-1	reviewed	nonsense	c.605	p.S202*	0.002	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF229	7772	genome.wustl.edu	36	19	49625431	49625431	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	19	49625431	49625431	G	A	SNP	ZNF229	NM_014518	human	genbank	54_36p	-1	validated	silent	c.1365	p.H455	0.550	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
GIPR	2696	genome.wustl.edu	36	19	50873003	50873003	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	19	50873003	50873003	G	C	SNP	GIPR	NM_000164	human	genbank	54_36p	+1	validated	splice_site	c.925-1	e10-1	1.000	-	-	-	no_errors
SUOX	6821	genome.wustl.edu	36	12	54684881	54684881	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	12	54684881	54684881	C	T	SNP	SUOX	NM_000456	human	genbank	54_36p	+1	reviewed	missense	c.1441	p.R481C	0.238	HMMPfam_Mo-co_dimer,superfamily_Ig_E-set	superfamily_Cyt_B5,HMMPfam_Cyt-b5,PatternScan_CYTOCHROME_B5_1,superfamily_Oxidored_molyb,HMMPfam_Oxidored_molyb,PatternScan_MOLYBDOPTERIN_EUK,HMMPfam_Mo-co_dimer,superfamily_Ig_E-set	-	no_errors
C14orf101	54916	genome.wustl.edu	36	14	56152432	56152432	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	14	56152432	56152432	T	C	SNP	C14orf101	NM_017799	human	genbank	54_36p	+1	validated	missense	c.875	p.M292T	1.000	NULL	NULL	-	no_errors
OR5AP2	338675	genome.wustl.edu	36	11	56165572	56165572	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	11	56165572	56165572	A	T	SNP	OR5AP2	NM_001002925	human	genbank	54_36p	-1	provisional	missense	c.920	p.L307Q	0.251	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PEG3	5178	genome.wustl.edu	36	19	62016979	62016979	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	19	62016979	62016979	C	T	SNP	PEG3	NM_006210	human	genbank	54_36p	-1	provisional	missense	c.4643	p.R1548H	0.000	NULL	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
SYVN1	84447	genome.wustl.edu	36	11	64655577	64655577	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	11	64655577	64655577	G	A	SNP	SYVN1	NM_172230	human	genbank	54_36p	-1	reviewed	nonsense	c.598	p.Q200*	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
CALN1	83698	genome.wustl.edu	36	7	71126675	71126675	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	7	71126675	71126675	T	C	SNP	CALN1	NM_031468	human	genbank	54_36p	-1	validated	missense	c.404	p.D135G	1.000	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,PatternScan_S100_CABP	-	no_errors
ENSG00000179994	0	genome.wustl.edu	36	7	71974924	71974924	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	7	71974924	71974924	G	T	SNP	ENSG00000179994	ENST00000355920	human	ensembl	54_36p	-1	known	silent	c.271	p.R91	0.086	NULL	NULL	-	no_errors
NEK9	91754	genome.wustl.edu	36	14	74624970	74624970	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	14	74624970	74624970	G	T	SNP	NEK9	NM_033116	human	genbank	54_36p	-1	validated	missense	c.2570	p.A857D	0.976	NULL	PatternScan_RCC1_1,PatternScan_RCC1_2,PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,superfamily_RCC1/BLIP-II,HMMPfam_RCC1	-	no_errors
SLC44A5	204962	genome.wustl.edu	36	1	75457608	75457608	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	1	75457608	75457608	C	T	SNP	SLC44A5	NM_152697	human	genbank	54_36p	-1	validated	silent	c.1188	p.A396	1.000	HMMPfam_DUF580	HMMPfam_DUF580	-	no_errors
SLC38A10	124565	genome.wustl.edu	36	17	76865510	76865510	+	Silent	SNP	G	A	A	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	17	76865510	76865510	G	A	SNP	SLC38A10	NM_001037984	human	genbank	54_36p	-1	validated	silent	c.645	p.Y215	0.998	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
MAGI2	9863	genome.wustl.edu	36	7	77594617	77594617	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	7	77594617	77594617	G	C	SNP	MAGI2	NM_012301	human	genbank	54_36p	-1	reviewed	missense	c.3256	p.P1086A	1.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1	-	no_errors
AKAP13	11214	genome.wustl.edu	36	15	84074759	84074759	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	15	84074759	84074759	C	T	SNP	AKAP13	NM_006738	human	genbank	54_36p	+1	reviewed	nonsense	c.7111	p.Q2371*	0.994	NULL	superfamily_ANK,HMMPfam_RII_binding_1,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,PatternScan_EF_HAND_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH	-	no_errors
PTPN21	11099	genome.wustl.edu	36	14	88037467	88037467	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	14	88037467	88037467	T	C	SNP	PTPN21	NM_007039	human	genbank	54_36p	-1	reviewed	splice_site	c.588-2	e6-2	1.000	-	-	-	no_errors
GSC	145258	genome.wustl.edu	36	14	94304596	94304596	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	14	94304596	94304596	C	G	SNP	GSC	NM_173849	human	genbank	54_36p	-1	reviewed	missense	c.759	p.L253F	1.000	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
FAHD2B	151313	genome.wustl.edu	36	2	97115310	97115310	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	2	97115310	97115310	C	A	SNP	FAHD2B	NM_199336	human	genbank	54_36p	-1	provisional	missense	c.538	p.A180S	0.993	superfamily_Fumarylacetoacetase_C-rel,HMMPfam_FAA_hydrolase	superfamily_Fumarylacetoacetase_C-rel,HMMPfam_FAA_hydrolase	-	no_errors
SYTL4	94121	genome.wustl.edu	36	X	99817703	99817703	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	X	99817703	99817703	G	T	SNP	SYTL4	NM_080737	human	genbank	54_36p	-1	validated	missense	c.1994	p.A665D	0.998	NULL	HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
MTTP	4547	genome.wustl.edu	36	4	100753203	100753203	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	4	100753203	100753203	G	T	SNP	MTTP	NM_000253	human	genbank	54_36p	+1	reviewed	missense	c.2100	p.Q700H	1.000	NULL	superfamily_Lipid_transp_b-sht_shell,HMMPfam_Vitellogenin_N,HMMSmart_LPD_N,superfamily_LV_superhelical	-	no_errors
CKAP2L	150468	genome.wustl.edu	36	2	113230720	113230720	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	2	113230720	113230720	A	C	SNP	CKAP2L	NM_152515	human	genbank	54_36p	-1	validated	missense	c.699	p.N233K	0.000	NULL	NULL	-	no_errors
SAMD3	154075	genome.wustl.edu	36	6	130517712	130517712	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	6	130517712	130517712	G	A	SNP	SAMD3	NM_001017373	human	genbank	54_36p	-1	validated	missense	c.974	p.P325L	0.995	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
GYPB	2994	genome.wustl.edu	36	4	145141886	145141886	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	4	145141886	145141886	T	G	SNP	GYPB	NM_002100	human	genbank	54_36p	-1	reviewed	missense	c.38	p.E13A	0.002	NULL	HMMPfam_Glycophorin_A,PatternScan_GLYCOPHORIN_A	-	no_errors
SH3TC2	79628	genome.wustl.edu	36	5	148372352	148372352	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	5	148372352	148372352	C	A	SNP	SH3TC2	NM_024577	human	genbank	54_36p	-1	reviewed	missense	c.3192	p.E1064D	0.982	superfamily_TPR-like,HMMSmart_SM00028	superfamily_SH3-domain,HMMPfam_SH3_2,HMMPfam_SH3_1,HMMSmart_SM00326,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors
FBXW7	55294	genome.wustl.edu	36	4	153493276	153493276	+	Silent	SNP	A	C	C	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	4	153493276	153493276	A	C	SNP	FBXW7	NM_018315	human	genbank	54_36p	-1	validated	silent	c.57	p.V19	1.000	NULL	superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
RBM16	22828	genome.wustl.edu	36	6	155195213	155195213	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	6	155195213	155195213	G	T	SNP	RBM16	NM_014892	human	genbank	54_36p	+1	validated	silent	c.2808	p.G936	0.996	NULL	superfamily_ENTH_VHS,HMMSmart_RPR,HMMPfam_DUF618,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
ADAMTS4	9507	genome.wustl.edu	36	1	159432629	159432629	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	1	159432629	159432629	T	A	SNP	ADAMTS4	NM_005099	human	genbank	54_36p	-1	reviewed	missense	c.1046	p.E349V	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
LY75	4065	genome.wustl.edu	36	2	160463585	160463585	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	2	160463585	160463585	T	G	SNP	LY75	NM_002349	human	genbank	54_36p	-1	validated	missense	c.326	p.K109T	0.994	superfamily_Ricin B-like lectins,HMMSmart_SM00458	superfamily_Ricin B-like lectins,HMMSmart_SM00458,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
XIRP2	129446	genome.wustl.edu	36	2	167807647	167807647	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	2	167807647	167807647	G	A	SNP	XIRP2	NM_152381	human	genbank	54_36p	+1	validated	missense	c.1499	p.R500H	1.000	NULL	HMMPfam_Xin	-	no_errors
CACNA1E	777	genome.wustl.edu	36	1	180011867	180011867	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	1	180011867	180011867	A	G	SNP	CACNA1E	NM_000721	human	genbank	54_36p	+1	reviewed	missense	c.5147	p.N1716S	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
C1orf74	148304	genome.wustl.edu	36	1	208023254	208023254	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	1	208023254	208023254	C	A	SNP	C1orf74	NM_152485	human	genbank	54_36p	-1	predicted	missense	c.349	p.V117F	1.000	NULL	PatternScan_TONB_DEPENDENT_REC_1	-	no_errors
CPS1	1373	genome.wustl.edu	36	2	211149460	211149460	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	2	211149460	211149460	G	A	SNP	CPS1	NM_001875	human	genbank	54_36p	+1	reviewed	splice_site	c.381+1	e3+1	1.000	-	-	-	no_errors
OR2T2	401992	genome.wustl.edu	36	1	246682895	246682895	+	Silent	SNP	A	A	C	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	1	246682895	246682895	A	C	SNP	OR2T2	NM_001004136	human	genbank	54_36p	+1	provisional	silent	c.174	p.T58	0.354	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
CDC14A	8556	genome.wustl.edu	36	1	100737085	100737103	+	Frame_Shift_Del	DEL	CTCCCGGCTAGCCAGTTCT	CTCCCGGCTAGCCAGTTCT	-	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	CTCCCGGCTAGCCAGTTCT	CTCCCGGCTAGCCAGTTCT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	1	100737085	100737103	CTCCCGGCTAGCCAGTTCT	-	DEL	CDC14A	NM_033312	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.1434_1452	p.S479fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00195,HMMSmart_SM00404,HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1	(deletion:cds_exon[100737073,100737523])	no_errors
PTPN22	26191	genome.wustl.edu	36	1	114182382	114182382	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-61-1903-01A-01W-0639-09	TCGA-61-1903-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	a67ce4fe-9da2-4eef-aa08-928658c25570	eaab9831-3f75-4083-9772-eba8674fd54c	1	114182382	114182382	T	-	DEL	PTPN22	NM_015967	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1163	p.D388fs	0.124	NULL	superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	(deletion:cds_exon[114181735,114182552])	no_errors
