Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ATP6	4508	genome.wustl.edu	36	MT	9000	9000	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	MT	9000	9000	T	C	SNP	MT-ATP6	ENST00000361899	human	ensembl	54_36p	+1	known	missense	c.473	p.V158A	NULL	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A,PatternScan_ATPASE_A	HMMPfam_ATP-synt_A,superfamily_ATPase_F0_A,PatternScan_ATPASE_A	-	no_errors
MUC5B	727897	genome.wustl.edu	36	11	1220371	1220371	+	Silent	SNP	C	G	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	11	1220371	1220371	C	G	SNP	MUC5B	NM_002458	human	genbank	54_36p	+1	validated	silent	c.5694	p.A1898	0.000	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	-	no_errors
LPCAT1	79888	genome.wustl.edu	36	5	1542912	1542912	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	5	1542912	1542912	T	A	SNP	LPCAT1	NM_024830	human	genbank	54_36p	-1	validated	missense	c.555	p.K185N	0.991	superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC	PatternScan_EF_HAND_1,superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF47473,HMMSmart_EFh	-	no_errors
TGM6	343641	genome.wustl.edu	36	20	2328266	2328266	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	20	2328266	2328266	C	T	SNP	TGM6	NM_198994	human	genbank	54_36p	+1	validated	silent	c.732	p.G244	0.917	superfamily_Cysteine proteinases	HMMPfam_Transglut_N,superfamily_E set domains,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C	-	no_errors
BTBD12	84464	genome.wustl.edu	36	16	3579413	3579413	+	Silent	SNP	G	C	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	16	3579413	3579413	G	C	SNP	BTBD12	NM_032444	human	genbank	54_36p	-1	provisional	silent	c.4227	p.A1409	0.000	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	-	no_errors
KCNA6	3742	genome.wustl.edu	36	12	4790388	4790388	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	12	4790388	4790388	A	T	SNP	KCNA6	NM_002235	human	genbank	54_36p	+1	reviewed	missense	c.920	p.Y307F	1.000	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-	no_errors
CNGA4	1262	genome.wustl.edu	36	11	6221948	6221948	+	Silent	SNP	C	T	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	11	6221948	6221948	C	T	SNP	CNGA4	NM_001037329	human	genbank	54_36p	+1	validated	silent	c.1461	p.I487	0.995	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors
ENSG00000186234	0	genome.wustl.edu	36	4	9307449	9307449	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	4	9307449	9307449	T	C	SNP	ENSG00000186234	ENST00000340703	human	ensembl	54_36p	+1	known	missense	c.187	p.Y63H	1.000	NULL	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_start_codon
MYH13	8735	genome.wustl.edu	36	17	10204007	10204007	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	17	10204007	10204007	T	G	SNP	MYH13	NM_003802	human	genbank	54_36p	-1	validated	missense	c.640	p.M214L	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors
MYH1	4619	genome.wustl.edu	36	17	10346890	10346890	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	17	10346890	10346890	T	C	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	missense	c.3001	p.K1001E	1.000	NULL	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
TAS2R42	353164	genome.wustl.edu	36	12	11230644	11230644	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	12	11230644	11230644	A	T	SNP	TAS2R42	NM_181429	human	genbank	54_36p	-1	provisional	missense	c.167	p.I56N	0.002	HMMPfam_TAS2R,superfamily_SSF81321	HMMPfam_TAS2R,superfamily_SSF81321	-	no_errors
GCDH	2639	genome.wustl.edu	36	19	12868161	12868161	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	19	12868161	12868161	G	A	SNP	GCDH	NM_000159	human	genbank	54_36p	+1	reviewed	missense	c.778	p.A260T	0.552	superfamily_Acyl-CoA dehydrogenase NM domain-like	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,HMMPfam_Acyl-CoA_dh_1,PatternScan_ACYL_COA_DH_2	-	no_errors
PDPN	10630	genome.wustl.edu	36	1	13783119	13783119	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	13783119	13783119	T	A	SNP	PDPN	NM_006474	human	genbank	54_36p	+1	reviewed	missense	c.232	p.W78R	0.854	HMMPfam_Podoplanin	HMMPfam_Podoplanin	-	no_errors
FLRT3	23767	genome.wustl.edu	36	20	14255301	14255301	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	20	14255301	14255301	A	G	SNP	FLRT3	NM_013281	human	genbank	54_36p	-1	reviewed	silent	c.852	p.S284	0.997	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
GALNTL2	117248	genome.wustl.edu	36	3	16236474	16236474	+	Silent	SNP	C	C	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	3	16236474	16236474	C	A	SNP	GALNTL2	NM_054110	human	genbank	54_36p	+1	validated	silent	c.1578	p.I526	0.001	superfamily_RicinB_like,HMMPfam_Ricin_B_lectin,HMMSmart_RICIN	superfamily_SSF53448,HMMPfam_Glycos_transf_2,superfamily_RicinB_like,HMMPfam_Ricin_B_lectin,HMMSmart_RICIN	-	no_errors
KIF16B	55614	genome.wustl.edu	36	20	16302921	16302921	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	20	16302921	16302921	C	A	SNP	KIF16B	NM_024704	human	genbank	54_36p	-1	validated	missense	c.3331	p.V1111F	0.000	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,PatternScan_LECTIN_LEGUME_BETA,superfamily_SMAD/FHA domain,HMMPfam_FHA,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312	-	no_errors
LDHC	3948	genome.wustl.edu	36	11	18429140	18429140	+	Silent	SNP	C	C	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	11	18429140	18429140	C	A	SNP	LDHC	NM_002301	human	genbank	54_36p	+1	reviewed	silent	c.889	p.R297	0.017	superfamily_Lactate_DH/Glyco_hydro_4_C,HMMPfam_Ldh_1_C	superfamily_NAD(P)-bd,HMMPfam_Ldh_1_N,superfamily_Lactate_DH/Glyco_hydro_4_C,HMMPfam_Ldh_1_C,PatternScan_L_LDH	-	no_errors
OR4E2	26686	genome.wustl.edu	36	14	21203842	21203842	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	14	21203842	21203842	G	T	SNP	OR4E2	NM_001001912	human	genbank	54_36p	+1	validated	missense	c.706	p.A236S	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR4E2	26686	genome.wustl.edu	36	14	21203884	21203884	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	14	21203884	21203884	T	A	SNP	OR4E2	NM_001001912	human	genbank	54_36p	+1	validated	missense	c.748	p.F250I	0.873	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
KIAA0319	9856	genome.wustl.edu	36	6	24704145	24704145	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	6	24704145	24704145	C	A	SNP	KIAA0319	NM_014809	human	genbank	54_36p	-1	validated	nonsense	c.736	p.E246*	0.007	NULL	HMMSmart_SM00765,HMMSmart_SM00060,HMMSmart_SM00089,superfamily_PKD domain	-	no_errors
ITPR2	3709	genome.wustl.edu	36	12	26665409	26665409	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	12	26665409	26665409	A	C	SNP	ITPR2	NM_002223	human	genbank	54_36p	-1	validated	missense	c.3376	p.S1126A	1.000	NULL	HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors
CCDC34	91057	genome.wustl.edu	36	11	27319631	27319631	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	11	27319631	27319631	C	G	SNP	CCDC34	NM_030771	human	genbank	54_36p	-1	validated	missense	c.649	p.E217Q	0.998	NULL	NULL	-	no_errors
LOC387646	387646	genome.wustl.edu	36	10	27575113	27575113	+	RNA	SNP	T	T	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	10	27575113	27575113	T	C	SNP	LOC387646	NR_003525	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.003	-	-	-	pseudogene
CHRNA7	1139	genome.wustl.edu	36	15	30110409	30110409	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	15	30110409	30110409	G	C	SNP	CHRNA7	NM_000746	human	genbank	54_36p	+1	reviewed	missense	c.72	p.E24D	1.000	superfamily_Neur_chan_LBD	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors
BAT2	7916	genome.wustl.edu	36	6	31707139	31707139	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	6	31707139	31707139	C	T	SNP	BAT2	NM_080686	human	genbank	54_36p	+1	reviewed	missense	c.2710	p.R904C	0.011	NULL	HMMPfam_BAT2_N	-	no_errors
EPC1	80314	genome.wustl.edu	36	10	32621975	32621975	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	10	32621975	32621975	T	G	SNP	EPC1	NM_025209	human	genbank	54_36p	-1	provisional	missense	c.613	p.N205H	1.000	NULL	HMMPfam_EPL1,HMMPfam_E_Pc_C	-	no_errors
HLA-DQB2	3120	genome.wustl.edu	36	6	32832219	32832219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	6	32832219	32832219	G	A	SNP	HLA-DQB2	ENST00000374931	human	ensembl	54_36p	-1	known	missense	c.784	p.L262F	0.362	NULL	superfamily_MHC_I/II-like_Ag-recog,HMMPfam_MHC_II_beta,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1,PatternScan_IG_MHC	-	no_errors
HLA-DPA1	3113	genome.wustl.edu	36	6	33144844	33144844	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	6	33144844	33144844	G	C	SNP	HLA-DPA1	NM_033554	human	genbank	54_36p	-1	reviewed	silent	c.558	p.P186	0.162	superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	superfamily_MHC antigen-recognition domain,HMMPfam_MHC_II_alpha,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-	no_errors
MYH9	4627	genome.wustl.edu	36	22	35024985	35024985	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	22	35024985	35024985	G	A	SNP	MYH9	NM_002473	human	genbank	54_36p	-1	reviewed	missense	c.3026	p.T1009I	0.191	superfamily_Prefoldin	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1,superfamily_Regulator of G-protein signaling RGS	-	no_errors
UNC5D	137970	genome.wustl.edu	36	8	35703434	35703434	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	8	35703434	35703434	C	A	SNP	UNC5D	NM_080872	human	genbank	54_36p	+1	validated	missense	c.1511	p.T504N	0.999	NULL	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,PatternScan_SERPIN,HMMPfam_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
NIPBL	25836	genome.wustl.edu	36	5	37100714	37100714	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	5	37100714	37100714	G	A	SNP	NIPBL	NM_133433	human	genbank	54_36p	+1	reviewed	missense	c.8378	p.R2793Q	1.000	NULL	superfamily_ARM repeat	-	no_errors
NUP155	9631	genome.wustl.edu	36	5	37365932	37365932	+	Silent	SNP	T	T	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	5	37365932	37365932	T	C	SNP	NUP155	NM_153485	human	genbank	54_36p	-1	reviewed	silent	c.1689	p.R563	1.000	HMMPfam_Nucleoporin	HMMPfam_Nucleoporin	-	no_errors
LRRK2	120892	genome.wustl.edu	36	12	38958028	38958028	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	12	38958028	38958028	T	G	SNP	LRRK2	NM_198578	human	genbank	54_36p	+1	reviewed	missense	c.2013	p.F671L	0.949	NULL	superfamily_ARM-type_fold,superfamily_SSF52058,HMMPfam_LRR_1,superfamily_SSF52540,HMMPfam_Miro,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,superfamily_WD40_like,HMMSmart_WD40,PatternScan_RCC1_2	-	no_errors
EHD4	30844	genome.wustl.edu	36	15	40022566	40022566	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	15	40022566	40022566	T	G	SNP	EHD4	NM_139265	human	genbank	54_36p	-1	provisional	missense	c.502	p.I168L	0.997	superfamily_SSF52540,HMMPfam_Dynamin_N	superfamily_SSF52540,HMMPfam_Dynamin_N,superfamily_SSF47473,HMMSmart_EH,PatternScan_EF_HAND_1	-	no_errors
TTBK2	146057	genome.wustl.edu	36	15	40881555	40881555	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	15	40881555	40881555	G	T	SNP	TTBK2	ENST00000263802	human	ensembl	54_36p	-1	known	missense	c.1104	p.N368K	1.000	HMMPfam_Filament	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMPfam_Filament,PatternScan_IF	-	no_errors
SLC14A2	8170	genome.wustl.edu	36	18	41475296	41475296	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	18	41475296	41475296	C	T	SNP	SLC14A2	NM_007163	human	genbank	54_36p	+1	validated	silent	c.1116	p.A372	0.971	HMMPfam_UT	HMMPfam_UT,PatternScan_MULTICOPPER_OXIDASE1	-	no_errors
EPSTI1	94240	genome.wustl.edu	36	13	42367190	42367190	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	13	42367190	42367190	G	A	SNP	EPSTI1	NM_001002264	human	genbank	54_36p	-1	validated	silent	c.903	p.L301	0.925	NULL	NULL	-	no_errors
ZNF383	163087	genome.wustl.edu	36	19	42418762	42418762	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	19	42418762	42418762	C	A	SNP	ZNF383	NM_152604	human	genbank	54_36p	+1	provisional	missense	c.178	p.Q60K	1.000	superfamily_Krueppel-associated_box,HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
HSF2BP	11077	genome.wustl.edu	36	21	43874704	43874704	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	21	43874704	43874704	C	T	SNP	HSF2BP	NM_007031	human	genbank	54_36p	-1	reviewed	silent	c.501	p.S167	0.019	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
RAMP3	10268	genome.wustl.edu	36	7	45183467	45183467	+	Silent	SNP	A	A	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	7	45183467	45183467	A	T	SNP	RAMP3	NM_005856	human	genbank	54_36p	+1	reviewed	silent	c.93	p.T31	0.131	NULL	HMMPfam_RAMP	-	no_errors
ZNF673	55634	genome.wustl.edu	36	X	46217211	46217211	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	X	46217211	46217211	G	C	SNP	ZNF673	NM_017776	human	genbank	54_36p	+1	validated	missense	c.321	p.K107N	0.964	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	-	no_errors
RP2	6102	genome.wustl.edu	36	X	46604459	46604459	+	Silent	SNP	C	T	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	X	46604459	46604459	C	T	SNP	RP2	NM_006915	human	genbank	54_36p	+1	reviewed	silent	c.861	p.D287	0.994	superfamily_NDK	HMMPfam_TBCC,HMMSmart_CARP,superfamily_NDK	-	no_errors
MKNK1	8569	genome.wustl.edu	36	1	46813221	46813221	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	46813221	46813221	C	G	SNP	MKNK1	NM_003684	human	genbank	54_36p	-1	validated	missense	c.373	p.E125Q	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
SPPL2A	84888	genome.wustl.edu	36	15	48816148	48816148	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	15	48816148	48816148	G	A	SNP	SPPL2A	NM_032802	human	genbank	54_36p	-1	reviewed	missense	c.815	p.P272L	1.000	HMMPfam_Peptidase_A22B,HMMSmart_SM00730	superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,HMMPfam_Peptidase_A22B,HMMSmart_SM00730	-	no_errors
NICN1	84276	genome.wustl.edu	36	3	49438722	49438722	+	Silent	SNP	T	T	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	3	49438722	49438722	T	A	SNP	NICN1	NM_032316	human	genbank	54_36p	-1	reviewed	silent	c.276	p.G92	0.999	NULL	NULL	-	no_errors
PYGL	5836	genome.wustl.edu	36	14	50480719	50480719	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	14	50480719	50480719	G	A	SNP	PYGL	NM_002863	human	genbank	54_36p	-1	validated	silent	c.153	p.D51	1.000	superfamily_SSF53756	superfamily_SSF53756,HMMPfam_Phosphorylase,PatternScan_PHOSPHORYLASE	-	no_errors
KRT85	3891	genome.wustl.edu	36	12	51043353	51043353	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	12	51043353	51043353	A	G	SNP	KRT85	NM_002283	human	genbank	54_36p	-1	reviewed	missense	c.895	p.Y299H	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
THSD1	55901	genome.wustl.edu	36	13	51850625	51850625	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	13	51850625	51850625	A	T	SNP	THSD1	NM_018676	human	genbank	54_36p	-1	reviewed	missense	c.1481	p.I494N	0.847	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors
ITIH1	3697	genome.wustl.edu	36	3	52786734	52786734	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	3	52786734	52786734	C	T	SNP	ITIH1	NM_002215	human	genbank	54_36p	+1	validated	silent	c.63	p.I21	0.002	NULL	HMMSmart_SM00609,HMMPfam_VIT,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_ITI_HC_C	-	no_errors
FST	10468	genome.wustl.edu	36	5	52814467	52814467	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	5	52814467	52814467	C	G	SNP	FST	NM_013409	human	genbank	54_36p	+1	reviewed	missense	c.86	p.A29G	1.000	NULL	HMMPfam_PRKCSH,HMMSmart_SM00274,HMMPfam_FOLN,superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1	-	no_errors
NEDD4L	23327	genome.wustl.edu	36	18	54140672	54140672	+	Silent	SNP	T	T	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	18	54140672	54140672	T	C	SNP	NEDD4L	NM_015277	human	genbank	54_36p	+1	validated	silent	c.384	p.F128	1.000	superfamily_C2_CaLB	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
MALT1	10892	genome.wustl.edu	36	18	54527617	54527617	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	18	54527617	54527617	A	G	SNP	MALT1	NM_006785	human	genbank	54_36p	+1	reviewed	missense	c.677	p.K226R	0.967	superfamily_Immunoglobulin	superfamily_DEATH domain,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Caspase-like,HMMPfam_Peptidase_C14	-	no_errors
DKKL1	27120	genome.wustl.edu	36	19	54560681	54560681	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	19	54560681	54560681	G	T	SNP	DKKL1	NM_014419	human	genbank	54_36p	+1	reviewed	missense	c.287	p.G96V	0.982	NULL	NULL	-	no_errors
FAM62A	23344	genome.wustl.edu	36	12	54818273	54818273	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	12	54818273	54818273	T	A	SNP	FAM62A	NM_015292	human	genbank	54_36p	+1	provisional	missense	c.2287	p.L763M	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
VRK3	51231	genome.wustl.edu	36	19	55202737	55202737	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	19	55202737	55202737	C	T	SNP	VRK3	NM_016440	human	genbank	54_36p	-1	reviewed	missense	c.448	p.E150K	0.095	NULL	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	-	no_errors
OR5W2	390148	genome.wustl.edu	36	11	55437755	55437755	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	11	55437755	55437755	T	A	SNP	OR5W2	NM_001001960	human	genbank	54_36p	-1	provisional	missense	c.880	p.N294Y	0.787	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC728115	728115	genome.wustl.edu	36	18	55834989	55834989	+	RNA	SNP	A	A	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	18	55834989	55834989	A	T	SNP	LOC728115	XR_038858	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SIGLECP3	284367	genome.wustl.edu	36	19	56362855	56362855	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	19	56362855	56362855	C	T	SNP	SIGLECP3	ENST00000341811	human	ensembl	54_36p	+1	known	silent	c.396	p.D132	0.001	superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set	superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig	-	no_start_codon
ZNF525	170958	genome.wustl.edu	36	19	58577249	58577249	+	RNA	SNP	A	A	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	19	58577249	58577249	A	C	SNP	ZNF525	NR_003699	human	genbank	54_36p	+1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
VPS13C	54832	genome.wustl.edu	36	15	60002058	60002058	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	15	60002058	60002058	G	C	SNP	VPS13C	NM_020821	human	genbank	54_36p	-1	validated	missense	c.6805	p.H2269D	0.001	NULL	HMMPfam_DUF1162	-	no_errors
CCDC88B	283234	genome.wustl.edu	36	11	63864786	63864786	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	11	63864786	63864786	G	T	SNP	CCDC88B	NM_032251	human	genbank	54_36p	+1	validated	silent	c.192	p.R64	0.996	NULL	NULL	-	no_errors
SPTB	6710	genome.wustl.edu	36	14	64307502	64307502	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	14	64307502	64307502	C	T	SNP	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	silent	c.5652	p.A1884	0.991	HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
ADAMTS9	56999	genome.wustl.edu	36	3	64594569	64594569	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	3	64594569	64594569	A	C	SNP	ADAMTS9	NM_182920	human	genbank	54_36p	-1	reviewed	missense	c.1883	p.V628G	0.995	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	-	no_errors
EDA	1896	genome.wustl.edu	36	X	69170098	69170098	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	X	69170098	69170098	G	A	SNP	EDA	NM_001005609	human	genbank	54_36p	+1	reviewed	splice_site	c.918+1	e7+1	1.000	-	-	-	no_errors
LLGL2	3993	genome.wustl.edu	36	17	71078711	71078711	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	17	71078711	71078711	C	G	SNP	LLGL2	NM_001031803	human	genbank	54_36p	+1	reviewed	missense	c.2111	p.S704W	0.999	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
FAM135A	57579	genome.wustl.edu	36	6	71252645	71252645	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	6	71252645	71252645	G	A	SNP	FAM135A	NM_020819	human	genbank	54_36p	+1	validated	missense	c.749	p.R250Q	0.991	NULL	superfamily_SSF53474,HMMPfam_DUF676	-	no_errors
LOC441728	441728	genome.wustl.edu	36	15	73862466	73862466	+	RNA	SNP	G	G	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	15	73862466	73862466	G	A	SNP	LOC441728	XR_017329	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.009	-	-	-	no_errors
KIAA0317	9870	genome.wustl.edu	36	14	74203965	74203965	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	14	74203965	74203965	C	T	SNP	KIAA0317	NM_001039479	human	genbank	54_36p	-1	validated	missense	c.2000	p.R667Q	1.000	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	superfamily_E set domains,HMMPfam_Filamin,PatternScan_RCC1_2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
SV2C	22987	genome.wustl.edu	36	5	75463419	75463419	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	5	75463419	75463419	G	T	SNP	SV2C	NM_014979	human	genbank	54_36p	+1	provisional	missense	c.88	p.V30L	1.000	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
MAGEE1	57692	genome.wustl.edu	36	X	75565606	75565606	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	X	75565606	75565606	C	A	SNP	MAGEE1	NM_020932	human	genbank	54_36p	+1	validated	missense	c.879	p.S293R	0.008	NULL	HMMPfam_MAGE	-	no_errors
NAV3	89795	genome.wustl.edu	36	12	76968950	76968950	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	12	76968950	76968950	A	G	SNP	NAV3	NM_014903	human	genbank	54_36p	+1	validated	missense	c.2408	p.E803G	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	-	no_errors
PHIP	55023	genome.wustl.edu	36	6	79722113	79722113	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	6	79722113	79722113	T	A	SNP	PHIP	NM_017934	human	genbank	54_36p	-1	validated	missense	c.3788	p.Q1263L	1.000	superfamily_Bromodomain	HMMSmart_SM00320,HMMPfam_WD40,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
SLC28A1	9154	genome.wustl.edu	36	15	83265282	83265282	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	15	83265282	83265282	C	A	SNP	SLC28A1	NM_004213	human	genbank	54_36p	+1	validated	missense	c.935	p.A312D	0.999	HMMPfam_Gate	HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C	-	no_errors
AGBL1	123624	genome.wustl.edu	36	15	84614303	84614303	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	15	84614303	84614303	G	T	SNP	AGBL1	NM_152336	human	genbank	54_36p	+1	validated	splice_site	c.1849+1	e12+1	1.000	-	-	-	no_errors
CLCA1	1179	genome.wustl.edu	36	1	86727402	86727402	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	86727402	86727402	T	G	SNP	CLCA1	NM_001285	human	genbank	54_36p	+1	reviewed	missense	c.1318	p.S440A	0.917	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMPfam_CLCA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_DUF1973,PatternScan_ATPASE_GAMMA	-	no_errors
SH3GLB1	51100	genome.wustl.edu	36	1	86957798	86957798	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	86957798	86957798	G	C	SNP	SH3GLB1	NM_016009	human	genbank	54_36p	+1	validated	missense	c.235	p.V79L	1.000	HMMSmart_SM00721,HMMPfam_BAR	HMMSmart_SM00721,HMMPfam_BAR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
MFGE8	4240	genome.wustl.edu	36	15	87254074	87254074	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	15	87254074	87254074	T	C	SNP	MFGE8	NM_005928	human	genbank	54_36p	-1	validated	missense	c.158	p.Y53C	0.970	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2	-	no_errors
SPG7	6687	genome.wustl.edu	36	16	88147752	88147752	+	Silent	SNP	G	A	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	16	88147752	88147752	G	A	SNP	SPG7	NM_003119	human	genbank	54_36p	+1	reviewed	silent	c.1986	p.V662	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Peptidase_M41	HMMPfam_FtsH_ext,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,HMMPfam_Peptidase_M41	-	no_errors
ENSG00000211616	0	genome.wustl.edu	36	2	89348959	89348959	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	2	89348959	89348959	A	G	SNP	ENSG00000211616	ENST00000390261	human	ensembl	54_36p	-1	known	missense	c.265	p.S89P	0.999	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	-	no_stop_codon:bad_bp_length_for_coding_region
GBP6	163351	genome.wustl.edu	36	1	89618666	89618666	+	Silent	SNP	A	A	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	89618666	89618666	A	T	SNP	GBP6	NM_198460	human	genbank	54_36p	+1	validated	silent	c.759	p.S253	0.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain	-	no_errors
FAM13A	10144	genome.wustl.edu	36	4	89890600	89890600	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	4	89890600	89890600	C	T	SNP	FAM13A	NM_014883	human	genbank	54_36p	-1	validated	missense	c.1938	p.M646I	1.000	NULL	superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors
GPR98	84059	genome.wustl.edu	36	5	89961007	89961007	+	Silent	SNP	A	A	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	5	89961007	89961007	A	T	SNP	GPR98	NM_032119	human	genbank	54_36p	+1	reviewed	silent	c.1734	p.S578	0.102	NULL	HMMSmart_SM00237,HMMPfam_Calx-beta,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP,PatternScan_A_DEAMINASE,PatternScan_LIPOYL,HMMPfam_GPS	-	no_errors
GPC5	2262	genome.wustl.edu	36	13	90899131	90899131	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	13	90899131	90899131	C	A	SNP	GPC5	NM_004466	human	genbank	54_36p	+1	reviewed	missense	c.279	p.S93R	0.992	HMMPfam_Glypican	HMMPfam_Glypican,PatternScan_GLYPICAN	-	no_errors
OGN	4969	genome.wustl.edu	36	9	94195286	94195286	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	9	94195286	94195286	G	A	SNP	OGN	NM_014057	human	genbank	54_36p	-1	reviewed	silent	c.330	p.D110	0.672	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors
TCL1A	8115	genome.wustl.edu	36	14	95248412	95248412	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	14	95248412	95248412	G	T	SNP	TCL1A	NM_001098725	human	genbank	54_36p	-1	validated	silent	c.195	p.T65	0.131	HMMPfam_TCL1_MTCP1,superfamily_TCL1_MTCP1	HMMPfam_TCL1_MTCP1,superfamily_TCL1_MTCP1	-	no_errors
LRRC28	123355	genome.wustl.edu	36	15	97720932	97720932	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	15	97720932	97720932	A	G	SNP	LRRC28	NM_144598	human	genbank	54_36p	+1	provisional	missense	c.970	p.T324A	1.000	NULL	superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors
TRRAP	8295	genome.wustl.edu	36	7	98405816	98405816	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	7	98405816	98405816	C	G	SNP	TRRAP	NM_003496	human	genbank	54_36p	+1	validated	missense	c.7583	p.P2528R	0.984	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_COPPER_BLUE,superfamily_Protein prenylyltransferase,HMMPfam_FAT,superfamily_TPR-like,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FATC	-	no_errors
HIAT1	64645	genome.wustl.edu	36	1	100306665	100306665	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	100306665	100306665	A	T	SNP	HIAT1	NM_033055	human	genbank	54_36p	+1	validated	missense	c.754	p.T252S	1.000	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
DRP2	1821	genome.wustl.edu	36	X	100392689	100392689	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	X	100392689	100392689	A	G	SNP	DRP2	NM_001939	human	genbank	54_36p	+1	validated	missense	c.1826	p.K609R	1.000	HMMPfam_ZZ,HMMSmart_ZnF_ZZ	HMMSmart_SPEC,superfamily_Spectrin,HMMPfam_Spectrin,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF47473,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1	-	no_errors
C12orf23	90488	genome.wustl.edu	36	12	105889252	105889252	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	12	105889252	105889252	G	T	SNP	C12orf23	NM_152261	human	genbank	54_36p	+1	validated	missense	c.304	p.V102L	1.000	NULL	NULL	-	no_errors
COL4A5	1287	genome.wustl.edu	36	X	107669671	107669671	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	X	107669671	107669671	A	C	SNP	COL4A5	NM_033380	human	genbank	54_36p	+1	reviewed	missense	c.121	p.S41R	0.987	NULL	HMMPfam_Collagen,superfamily_C-type_lectin_fold,HMMPfam_C4,HMMSmart_C4	-	no_errors
RGAG1	57529	genome.wustl.edu	36	X	109583894	109583894	+	Silent	SNP	G	A	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	X	109583894	109583894	G	A	SNP	RGAG1	NM_020769	human	genbank	54_36p	+1	provisional	silent	c.3393	p.A1131	0.001	NULL	HMMPfam_Retrotrans_gag	-	no_errors
PKHD1L1	93035	genome.wustl.edu	36	8	110526387	110526387	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	8	110526387	110526387	G	C	SNP	PKHD1L1	NM_177531	human	genbank	54_36p	+1	validated	missense	c.5113	p.V1705L	0.837	HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00758,superfamily_Anthrax protective antigen,HMMSmart_SM00710,superfamily_Cupredoxins,HMMPfam_G8,superfamily_Pectin lyase-like	-	no_errors
TTC12	54970	genome.wustl.edu	36	11	112726089	112726089	+	Silent	SNP	G	T	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	11	112726089	112726089	G	T	SNP	TTC12	NM_017868	human	genbank	54_36p	+1	validated	silent	c.1239	p.L413	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452,PatternScan_CPSASE_2	-	no_errors
PPP1R3A	5506	genome.wustl.edu	36	7	113346088	113346088	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	7	113346088	113346088	G	T	SNP	PPP1R3A	NM_002711	human	genbank	54_36p	-1	reviewed	missense	c.200	p.A67D	1.000	NULL	HMMPfam_CBM_21	-	no_errors
LRCH2	57631	genome.wustl.edu	36	X	114325237	114325237	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	X	114325237	114325237	A	C	SNP	LRCH2	NM_020871	human	genbank	54_36p	-1	validated	missense	c.614	p.M205R	1.000	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH	-	no_errors
WDR31	114987	genome.wustl.edu	36	9	115134117	115134117	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	9	115134117	115134117	G	T	SNP	WDR31	NM_001012361	human	genbank	54_36p	-1	reviewed	missense	c.7	p.L3I	0.001	PatternScan_TONB_DEPENDENT_REC_1	PatternScan_TONB_DEPENDENT_REC_1,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
CTTNBP2	83992	genome.wustl.edu	36	7	117146853	117146853	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	7	117146853	117146853	C	A	SNP	CTTNBP2	NM_033427	human	genbank	54_36p	-1	reviewed	missense	c.4585	p.D1529Y	1.000	NULL	HMMPfam_CortBP2,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
PXN	5829	genome.wustl.edu	36	12	119146556	119146556	+	Silent	SNP	C	C	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	12	119146556	119146556	C	A	SNP	PXN	NM_002859	human	genbank	54_36p	-1	validated	silent	c.21	p.L7	1.000	NULL	HMMPfam_Paxillin,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
PTPRZ1	5803	genome.wustl.edu	36	7	121437979	121437979	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	7	121437979	121437979	C	A	SNP	PTPRZ1	NM_002851	human	genbank	54_36p	+1	reviewed	missense	c.1643	p.S548Y	0.000	NULL	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
CCDC15	80071	genome.wustl.edu	36	11	124367773	124367773	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	11	124367773	124367773	C	T	SNP	CCDC15	NM_025004	human	genbank	54_36p	+1	validated	nonsense	c.2119	p.Q707*	0.000	NULL	NULL	-	no_errors
FAT4	79633	genome.wustl.edu	36	4	126459998	126459998	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	4	126459998	126459998	A	G	SNP	FAT4	NM_024582	human	genbank	54_36p	+1	validated	silent	c.2982	p.P994	0.998	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_EGF	-	no_errors
SLC12A2	6558	genome.wustl.edu	36	5	127531367	127531367	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	5	127531367	127531367	C	T	SNP	SLC12A2	NM_001046	human	genbank	54_36p	+1	validated	missense	c.2632	p.R878C	1.000	NULL	HMMPfam_AA_permease_N,HMMPfam_AA_permease	-	no_errors
PPAPDC3	84814	genome.wustl.edu	36	9	133173480	133173480	+	Silent	SNP	C	C	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	9	133173480	133173480	C	A	SNP	PPAPDC3	NM_032728	human	genbank	54_36p	+1	validated	silent	c.801	p.L267	1.000	NULL	superfamily_AcPase_VanPerase,HMMSmart_acidPPc,HMMPfam_PAP2	-	no_errors
RALGDS	5900	genome.wustl.edu	36	9	134968958	134968958	+	Silent	SNP	C	C	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	9	134968958	134968958	C	G	SNP	RALGDS	NM_006266	human	genbank	54_36p	-1	validated	silent	c.1755	p.L585	1.000	superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF,superfamily_Ubiquitin-like,HMMPfam_RA,HMMSmart_SM00314	-	no_errors
ADCK2	90956	genome.wustl.edu	36	7	140019901	140019901	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	7	140019901	140019901	T	A	SNP	ADCK2	NM_052853	human	genbank	54_36p	+1	validated	missense	c.302	p.L101H	0.381	NULL	HMMPfam_ABC1,superfamily_Protein kinase-like (PK-like)	-	no_errors
PCDHGA4	56111	genome.wustl.edu	36	5	140716206	140716206	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	5	140716206	140716206	A	T	SNP	PCDHGA4	NM_018917	human	genbank	54_36p	+1	reviewed	missense	c.1255	p.N419Y	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCDHGB6	56100	genome.wustl.edu	36	5	140769367	140769367	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	5	140769367	140769367	G	T	SNP	PCDHGB6	NM_018926	human	genbank	54_36p	+1	reviewed	missense	c.1414	p.A472S	0.001	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
ARHGAP26	23092	genome.wustl.edu	36	5	142254013	142254013	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	5	142254013	142254013	G	A	SNP	ARHGAP26	NM_015071	human	genbank	54_36p	+1	validated	silent	c.513	p.R171	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,PatternScan_IG_MHC	-	no_errors
FAM131B	9715	genome.wustl.edu	36	7	142764171	142764171	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	7	142764171	142764171	A	T	SNP	FAM131B	NM_001031690	human	genbank	54_36p	-1	validated	missense	c.593	p.L198Q	1.000	NULL	NULL	-	no_errors
FAM115A	9747	genome.wustl.edu	36	7	143204272	143204272	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	7	143204272	143204272	G	T	SNP	FAM115A	NM_014719	human	genbank	54_36p	-1	predicted	silent	c.363	p.S121	0.998	NULL	NULL	-	no_errors
LOC728377	0	genome.wustl.edu	36	7	143596327	143596327	+	RNA	SNP	T	A	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	7	143596327	143596327	T	A	SNP	LOC728377	XR_041052	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.967	-	-	-	no_errors
CYC1	1537	genome.wustl.edu	36	8	145223602	145223602	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	8	145223602	145223602	C	G	SNP	CYC1	NM_001916	human	genbank	54_36p	+1	validated	missense	c.739	p.P247A	0.996	superfamily_Cytochrome c,HMMPfam_Cytochrom_C1	superfamily_Cytochrome c,HMMPfam_Cytochrom_C1,superfamily_Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) transmembrane anchor	-	no_errors
MBD5	55777	genome.wustl.edu	36	2	148976513	148976513	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	2	148976513	148976513	G	A	SNP	MBD5	NM_018328	human	genbank	54_36p	+1	validated	silent	c.4302	p.L1434	1.000	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP	HMMSmart_SM00391,HMMPfam_MBD,superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP	-	no_errors
RFX5	5993	genome.wustl.edu	36	1	149582024	149582024	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	149582024	149582024	G	A	SNP	RFX5	NM_000449	human	genbank	54_36p	-1	reviewed	silent	c.1113	p.A371	0.171	NULL	HMMPfam_RFX_DNA_binding,superfamily_SSF46785	-	no_errors
HTR5A	3361	genome.wustl.edu	36	7	154493717	154493717	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	7	154493717	154493717	C	A	SNP	HTR5A	NM_024012	human	genbank	54_36p	+1	reviewed	missense	c.175	p.L59M	0.993	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ETV3L	440695	genome.wustl.edu	36	1	155334285	155334285	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	155334285	155334285	G	A	SNP	ETV3L	NM_001004341	human	genbank	54_36p	-1	provisional	silent	c.606	p.Y202	0.109	NULL	superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2	-	no_errors
NPY5R	4889	genome.wustl.edu	36	4	164491219	164491219	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	4	164491219	164491219	A	G	SNP	NPY5R	NM_006174	human	genbank	54_36p	+1	provisional	missense	c.344	p.H115R	0.923	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
TNFSF18	8995	genome.wustl.edu	36	1	171277378	171277378	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	171277378	171277378	A	C	SNP	TNFSF18	NM_005092	human	genbank	54_36p	-1	reviewed	missense	c.352	p.L118V	0.403	superfamily_TNF_like,HMMPfam_TNF	superfamily_TNF_like,HMMPfam_TNF	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179105662	179105662	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	2	179105662	179105662	A	T	SNP	TTN	NM_133378	human	genbank	54_36p	-1	reviewed	missense	c.96221	p.L32074Q	0.903	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Ypt/Rab-GAP domain of gyp1p,superfamily_beta-sandwich domain of Sec23/24,superfamily_vWA-like,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_RCC1_2	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
KIAA1614	57710	genome.wustl.edu	36	1	179152150	179152150	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	179152150	179152150	G	T	SNP	KIAA1614	NM_020950	human	genbank	54_36p	+1	validated	silent	c.288	p.V96	0.000	NULL	NULL	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179363073	179363073	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	2	179363073	179363073	A	G	SNP	TTN	NM_133379	human	genbank	54_36p	-1	reviewed	silent	c.1815	p.T605	0.986	HMMPfam_Titin_Z	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_Titin_Z,HMMPfam_ig,PatternScan_IG_MHC,PatternScan_THIOL_PROTEASE_HIS	-	no_errors
SMG7	9887	genome.wustl.edu	36	1	181772951	181772951	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	181772951	181772951	A	G	SNP	SMG7	NM_173156	human	genbank	54_36p	+1	validated	silent	c.1212	p.E404	0.998	NULL	HMMPfam_EST1,superfamily_TPR-like	-	no_errors
TUBB4Q	56604	genome.wustl.edu	36	4	191141376	191141376	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	4	191141376	191141376	A	G	SNP	TUBB4Q	NM_020040	human	genbank	54_36p	-1	validated	missense	c.601	p.C201R	1.000	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_start_codon
MYO1B	4430	genome.wustl.edu	36	2	191975672	191975672	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	2	191975672	191975672	T	A	SNP	MYO1B	ENST00000304164	human	ensembl	54_36p	+1	known	missense	c.2539	p.Y847N	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_TH1	-	no_errors
CFH	3075	genome.wustl.edu	36	1	194913268	194913268	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	194913268	194913268	A	T	SNP	CFH	NM_000186	human	genbank	54_36p	+1	reviewed	missense	c.467	p.K156I	0.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
SATB2	23314	genome.wustl.edu	36	2	199845260	199845260	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	2	199845260	199845260	G	A	SNP	SATB2	NM_015265	human	genbank	54_36p	-1	validated	silent	c.2121	p.S707	0.004	NULL	HMMPfam_CUT,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox	-	no_errors
LOC729191	729191	genome.wustl.edu	36	2	201984562	201984562	+	RNA	SNP	C	C	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	2	201984562	201984562	C	A	SNP	LOC729191	XR_015913	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
STK16	8576	genome.wustl.edu	36	2	219821240	219821240	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	2	219821240	219821240	C	G	SNP	STK16	NM_001008910	human	genbank	54_36p	+1	validated	missense	c.739	p.L247V	1.000	superfamily_Kinase_like,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235847326	235847326	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	235847326	235847326	A	T	SNP	RYR2	NM_001035	human	genbank	54_36p	+1	reviewed	missense	c.5833	p.N1945Y	1.000	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
PLD5	200150	genome.wustl.edu	36	1	240320014	240320014	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	240320014	240320014	T	C	SNP	PLD5	NM_152666	human	genbank	54_36p	-1	provisional	missense	c.1100	p.N367S	1.000	superfamily_SSF56024,HMMPfam_PLDc,HMMSmart_PLDc	superfamily_SSF56024,HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope	-	no_errors
PPP1R7	5510	genome.wustl.edu	36	2	241751429	241751429	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	2	241751429	241751429	C	T	SNP	PPP1R7	NM_002712	human	genbank	54_36p	+1	provisional	silent	c.654	p.N218	1.000	superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1	superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00446	-	no_errors
C1orf71	163882	genome.wustl.edu	36	1	244851488	244851488	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	1	244851488	244851488	T	C	SNP	C1orf71	NM_152609	human	genbank	54_36p	+1	validated	missense	c.514	p.S172P	0.451	NULL	NULL	-	no_errors
PRKAR1B	5575	genome.wustl.edu	36	7	686854	686890	+	In_Frame_Del	DEL	TGACTTTTGCCGCGCCAAAATCTGCCTGTTTTCTTCC	TGACTTTTGCCGCGCCAAAATCTGCCTGTTTTCTTCC	-	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	TGACTTTTGCCGCGCCAAAATCTGCCTGTTTTCTTCC	TGACTTTTGCCGCGCCAAAATCTGCCTGTTTTCTTCC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	7	686854	686890	TGACTTTTGCCGCGCCAAAATCTGCCTGTTTTCTTCC	-	DEL	PRKAR1B	NM_002735	human	genbank	54_36p	-1	provisional	in_frame_del	c.213_178	p.EENRQILARQKS60in_frame_del	0.623:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.963:0.953:0.953:0.852:0.985:0.989:0.987:0.827:0.265:0.210:0.945:1.000:1.000:1.000:1.000:0.995:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_RIIa,HMMSmart_RIIa	HMMPfam_RIIa,HMMSmart_RIIa,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	(deletion:cds_exon[686719,686889], intron[686890,717491])	no_errors
TP53	7157	genome.wustl.edu	36	17	7519000	7519000	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	17	7519000	7519000	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.574	p.Q192fs	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7518902,7519014])	no_errors
MPRIP	23164	genome.wustl.edu	36	17	16980287	16980289	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	CAG	CAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	17	16980287	16980289	CAG	-	DEL	MPRIP	NM_015134	human	genbank	54_36p	+1	validated	in_frame_del	c.534_536	p.S182in_frame_del	0.997:0.998:0.998	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	(deletion:cds_exon[16980258,16980489])	no_errors
LOC646517	646517	genome.wustl.edu	36	6	51383455	51383496	+	RNA	DEL	GTCCTTTCCGGGGAGCCTGGTGCGAGCTCCGCGGGCGCCGGA	GTCCTTTCCGGGGAGCCTGGTGCGAGCTCCGCGGGCGCCGGA	-	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	GTCCTTTCCGGGGAGCCTGGTGCGAGCTCCGCGGGCGCCGGA	GTCCTTTCCGGGGAGCCTGGTGCGAGCTCCGCGGGCGCCGGA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	6	51383455	51383496	GTCCTTTCCGGGGAGCCTGGTGCGAGCTCCGCGGGCGCCGGA	-	DEL	LOC646517	XR_017669	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000:0.000:0.001:0.004:0.003:0.002:0.001:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.002:0.002:0.003:0.003:0.001:0.001:0.001:0.002:0.002:0.005:0.005:0.005:0.006:0.005:0.003:0.001:0.001:0.000:0.001:0.001:0.003:0.004:0.003:0.006:0.007:0.007	-	-	(deletion:rna[51382842,51383471], flank[51383472,51433471])	pseudogene
NPIPL2	0	genome.wustl.edu	36	16	72982901	72982903	+	In_Frame_Del	DEL	CAA	CAA	-	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	CAA	CAA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	16	72982901	72982903	CAA	-	DEL	NPIPL2	ENST00000355290	human	ensembl	54_36p	+1	known	in_frame_del	c.571_573	p.Q192in_frame_del	0.000:0.000:0.000	HMMPfam_NPIP	HMMPfam_NPIP	(deletion:cds_exon[72982790,72983479])	no_errors
IFIT1L	439996	genome.wustl.edu	36	10	91133804	91133828	+	Frame_Shift_Del	DEL	TATGTCTTTCAATATGCAGCCAAGT	TATGTCTTTCAATATGCAGCCAAGT	-	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	TATGTCTTTCAATATGCAGCCAAGT	TATGTCTTTCAATATGCAGCCAAGT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	10	91133804	91133828	TATGTCTTTCAATATGCAGCCAAGT	-	DEL	IFIT1L	NM_001010987	human	genbank	54_36p	+1	provisional	frame_shift_del	c.754_778	p.Y252fs	0.051:0.708:0.797:0.804:0.946:0.975:0.970:0.951:0.941:0.935:0.956:0.967:0.952:0.995:1.000:0.998:1.000:0.998:0.997:1.000:0.996:0.996:1.000:0.997:0.995	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	(deletion:cds_exon[91133056,91134475])	no_errors
FXR1	8087	genome.wustl.edu	36	3	182168562	182168563	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-61-1910-01A-01W-0639-09	TCGA-61-1910-11A-01W-0640-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3d4c15e7-3706-41ec-9443-38d89c9646aa	6f5d55e5-eb09-4296-a789-b326d3d50fdd	3	182168562	182168563	-	A	INS	FXR1	NM_005087	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.1228_1229	p.T411fs	1.000:1.000	NULL	HMMPfam_Agenet,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1	-	no_errors
