Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
CRIPAK	285464	genome.wustl.edu	36	4	1378790	1378790	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	4	1378790	1378790	T	C	SNP	CRIPAK	NM_175918	human	genbank	54_36p	+1	validated	missense	c.491	p.V164A	0.000	NULL	HMMSmart_PostSET	-	no_errors
CSMD1	64478	genome.wustl.edu	36	8	3068658	3068658	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	8	3068658	3068658	C	A	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	missense	c.4488	p.K1496N	1.000	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
N-PAC	84656	genome.wustl.edu	36	16	4822112	4822112	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	16	4822112	4822112	C	A	SNP	N-PAC	NM_032569	human	genbank	54_36p	-1	validated	missense	c.406	p.V136L	1.000	NULL	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_AT_hook,HMMPfam_NAD_binding_2,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like	-	no_errors
OR51B4	79339	genome.wustl.edu	36	11	5279517	5279517	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	11	5279517	5279517	A	C	SNP	OR51B4	NM_033179	human	genbank	54_36p	-1	validated	missense	c.236	p.V79G	0.028	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	17	7518990	7518990	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195T	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
ADAMTS10	81794	genome.wustl.edu	36	19	8574756	8574756	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	19	8574756	8574756	C	T	SNP	ADAMTS10	NM_030957	human	genbank	54_36p	-1	reviewed	missense	c.448	p.V150M	1.000	HMMPfam_Pep_M12B_propep	PatternScan_DISINTEGRIN_1,HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC	-	no_errors
KIF1B	23095	genome.wustl.edu	36	1	10325896	10325896	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	1	10325896	10325896	C	T	SNP	KIF1B	NM_015074	human	genbank	54_36p	+1	reviewed	nonsense	c.3514	p.R1172*	0.990	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
HSP90AB2P	391634	genome.wustl.edu	36	4	12948927	12948927	+	RNA	SNP	T	T	A	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	4	12948927	12948927	T	A	SNP	HSP90AB2P	NR_003132	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
CYP4F12	66002	genome.wustl.edu	36	19	15655393	15655393	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	19	15655393	15655393	G	A	SNP	CYP4F12	NM_023944	human	genbank	54_36p	+1	reviewed	silent	c.738	p.L246	0.067	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors
LOC388076	388076	genome.wustl.edu	36	15	19942200	19942200	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	15	19942200	19942200	G	C	SNP	LOC388076	XM_931016	human	genbank	54_36p	-1	model	missense	c.11	p.S4C	1.000	HMMPfam_Ribosomal_S8e	HMMPfam_Ribosomal_S8e	-	pseudogene
GABRA5	2558	genome.wustl.edu	36	15	24767214	24767214	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	15	24767214	24767214	A	T	SNP	GABRA5	ENST00000355395	human	ensembl	54_36p	+1	known	splice_site	c.485-2	e7-2	0.296	-	-	-	no_stop_codon
LOC646346	646346	genome.wustl.edu	36	X	26614219	26614219	+	RNA	SNP	A	A	T	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	X	26614219	26614219	A	T	SNP	LOC646346	XR_017105	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.821	-	-	-	pseudogene
MTPAP	55149	genome.wustl.edu	36	10	30665886	30665886	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	10	30665886	30665886	C	T	SNP	MTPAP	NM_018109	human	genbank	54_36p	-1	validated	missense	c.632	p.C211Y	1.000	superfamily_Nucleotidyltransferase	superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc	-	no_errors
GTPBP1	9567	genome.wustl.edu	36	22	37442742	37442742	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	22	37442742	37442742	A	T	SNP	GTPBP1	NM_004286	human	genbank	54_36p	+1	reviewed	missense	c.625	p.S209C	1.000	superfamily_SSF52540,HMMPfam_GTP_EFTU	superfamily_SSF52540,HMMPfam_GTP_EFTU,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,superfamily_Elong_init_C,HMMPfam_GTP_EFTU_D3	-	no_errors
ZNF25	219749	genome.wustl.edu	36	10	38286353	38286353	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	10	38286353	38286353	C	A	SNP	ZNF25	NM_145011	human	genbank	54_36p	-1	provisional	splice_site	c.142+1	e2+1	0.999	-	-	-	no_errors
TOE1	114034	genome.wustl.edu	36	1	45581533	45581533	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	1	45581533	45581533	C	T	SNP	TOE1	NM_025077	human	genbank	54_36p	+1	validated	nonsense	c.1105	p.Q369*	0.835	HMMPfam_CAF1	superfamily_RNaseH_fold,HMMPfam_CAF1,HMMPfam_zf-CCCH	-	no_errors
ZNF229	7772	genome.wustl.edu	36	19	49626026	49626026	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	19	49626026	49626026	C	T	SNP	ZNF229	NM_014518	human	genbank	54_36p	-1	validated	missense	c.770	p.R257H	0.002	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
CASS4	57091	genome.wustl.edu	36	20	54466913	54466913	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	20	54466913	54466913	C	T	SNP	CASS4	NM_020356	human	genbank	54_36p	+1	validated	silent	c.2064	p.S688	0.003	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_Serine_rich	-	no_errors
PNKP	11284	genome.wustl.edu	36	19	55059141	55059141	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	19	55059141	55059141	C	G	SNP	PNKP	NM_007254	human	genbank	54_36p	-1	provisional	splice_site	c.637-1	e6-1	1.000	-	-	-	no_errors
KDR	3791	genome.wustl.edu	36	4	55679543	55679543	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	4	55679543	55679543	A	C	SNP	KDR	NM_002253	human	genbank	54_36p	-1	validated	missense	c.343	p.Y115D	0.990	superfamily_SSF48726,HMMSmart_IG	superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
NLRP11	204801	genome.wustl.edu	36	19	61012168	61012168	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	19	61012168	61012168	C	T	SNP	NLRP11	NM_145007	human	genbank	54_36p	-1	validated	silent	c.1620	p.T540	0.001	NULL	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,PatternScan_CU2_MONOOXYGENASE_1,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
LOC649137	649137	genome.wustl.edu	36	19	61411347	61411347	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	19	61411347	61411347	C	T	SNP	LOC649137	XM_001131980	human	genbank	54_36p	+1	model	nonsense	c.721	p.Q241*	0.048	NULL	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PEG3	5178	genome.wustl.edu	36	19	62018464	62018464	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	19	62018464	62018464	T	G	SNP	PEG3	NM_006210	human	genbank	54_36p	-1	provisional	missense	c.3158	p.Y1053S	0.064	NULL	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ADAMTS9	56999	genome.wustl.edu	36	3	64557582	64557582	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	3	64557582	64557582	G	A	SNP	ADAMTS9	NM_182920	human	genbank	54_36p	-1	reviewed	silent	c.4143	p.G1381	0.997	superfamily_TSP-1 type 1 repeat,HMMPfam_TSP_1,HMMSmart_SM00209	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	-	no_errors
MITF	4286	genome.wustl.edu	36	3	70011017	70011017	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	3	70011017	70011017	C	T	SNP	MITF	NM_198159	human	genbank	54_36p	+1	reviewed	silent	c.147	p.S49	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors
SHROOM3	57619	genome.wustl.edu	36	4	77899758	77899758	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	4	77899758	77899758	C	A	SNP	SHROOM3	NM_020859	human	genbank	54_36p	+1	validated	missense	c.5232	p.N1744K	0.469	HMMPfam_ASD2	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2	-	no_errors
IFI44L	10964	genome.wustl.edu	36	1	78866235	78866235	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	1	78866235	78866235	G	C	SNP	IFI44L	ENST00000370751	human	ensembl	54_36p	+1	known	missense	c.47	p.R16P	0.001	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC152845	152845	genome.wustl.edu	36	4	85384020	85384020	+	RNA	SNP	G	G	A	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	4	85384020	85384020	G	A	SNP	LOC152845	XR_038721	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.726	-	-	-	pseudogene
ENSG00000211623	0	genome.wustl.edu	36	2	89662560	89662560	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	2	89662560	89662560	G	T	SNP	ENSG00000211623	ENST00000390268	human	ensembl	54_36p	+1	known	missense	c.107	p.G36V	0.568	HMMPfam_V-set,superfamily_SSF48726	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	-	no_stop_codon:bad_bp_length_for_coding_region
BDKRB2	624	genome.wustl.edu	36	14	95777119	95777119	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	14	95777119	95777119	T	A	SNP	BDKRB2	NM_000623	human	genbank	54_36p	+1	reviewed	missense	c.701	p.L234Q	0.998	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
C6orf167	253714	genome.wustl.edu	36	6	97783939	97783939	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	6	97783939	97783939	A	C	SNP	C6orf167	NM_198468	human	genbank	54_36p	-1	predicted	missense	c.1591	p.F531V	1.000	NULL	NULL	-	no_errors
AP4M1	9179	genome.wustl.edu	36	7	99540616	99540616	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	7	99540616	99540616	G	C	SNP	AP4M1	NM_004722	human	genbank	54_36p	+1	reviewed	missense	c.686	p.G229A	1.000	HMMPfam_Adap_comp_sub,superfamily_AP50	PatternScan_CLAT_ADAPTOR_M_1,HMMPfam_Clat_adaptor_s,superfamily_Longin_like,HMMPfam_Adap_comp_sub,superfamily_AP50,PatternScan_CLAT_ADAPTOR_M_2	-	no_errors
SLC30A7	148867	genome.wustl.edu	36	1	101134759	101134759	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	1	101134759	101134759	G	A	SNP	SLC30A7	NM_133496	human	genbank	54_36p	+1	validated	silent	c.126	p.L42	1.000	HMMPfam_Cation_efflux	HMMPfam_Cation_efflux	-	no_errors
SLC9A2	6549	genome.wustl.edu	36	2	102648062	102648062	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	2	102648062	102648062	C	T	SNP	SLC9A2	NM_003048	human	genbank	54_36p	+1	validated	silent	c.825	p.I275	0.987	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors
MTSS1	9788	genome.wustl.edu	36	8	125634564	125634564	+	Silent	SNP	A	A	C	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	8	125634564	125634564	A	C	SNP	MTSS1	NM_014751	human	genbank	54_36p	-1	validated	silent	c.2118	p.T706	0.000	NULL	HMMPfam_IMD,HMMPfam_WH2	-	no_errors
TXNIP	10628	genome.wustl.edu	36	1	144151789	144151789	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	1	144151789	144151789	A	G	SNP	TXNIP	NM_006472	human	genbank	54_36p	+1	validated	silent	c.738	p.T246	0.999	superfamily_Ig_E-set,HMMPfam_Arrestin_C	superfamily_Ig_E-set,HMMPfam_Arrestin_N,HMMPfam_Arrestin_C	-	no_errors
LIX1L	128077	genome.wustl.edu	36	1	144209484	144209484	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	1	144209484	144209484	C	G	SNP	LIX1L	NM_153713	human	genbank	54_36p	+1	provisional	missense	c.718	p.L240V	1.000	NULL	NULL	-	no_errors
PPP1R2P3	153743	genome.wustl.edu	36	5	156210839	156210839	+	RNA	SNP	T	T	A	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	5	156210839	156210839	T	A	SNP	PPP1R2P3	NR_002168	human	genbank	54_36p	+1	validated	rna	NULL	NULL	0.961	-	-	-	pseudogene
MRPL18	29074	genome.wustl.edu	36	6	160132119	160132119	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	6	160132119	160132119	G	C	SNP	MRPL18	NM_014161	human	genbank	54_36p	+1	reviewed	silent	c.210	p.T70	0.541	NULL	superfamily_Translational machinery components	-	no_errors
TNN	63923	genome.wustl.edu	36	1	173354500	173354500	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1911-01A-01W-0639-09	TCGA-61-1911-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12ba9b9d-41e5-4880-86f6-dbf4e124aeff	ed003685-1f6c-47a7-9bd9-535faefc0a94	1	173354500	173354500	G	C	SNP	TNN	NM_022093	human	genbank	54_36p	+1	validated	missense	c.2567	p.R856T	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	PatternScan_EGF_1,HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors
