Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-CO3	4514	genome.wustl.edu	36	MT	8431	8431	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	MT	8431	8431	T	C	SNP	MT-CO3	ENST00000361851	human	ensembl	54_36p	+1	known	missense	c.65	p.L22P	NULL	HMMPfam_ATP-synt_8	HMMPfam_ATP-synt_8	-	no_errors
MT-ND4	4538	genome.wustl.edu	36	MT	11049	11049	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	MT	11049	11049	T	C	SNP	MT-ND4	ENST00000361381	human	ensembl	54_36p	+1	known	missense	c.289	p.S97P	NULL	HMMPfam_Oxidored_q5_N	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region
B4GALNT3	283358	genome.wustl.edu	36	12	533170	533170	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	12	533170	533170	A	T	SNP	B4GALNT3	NM_173593	human	genbank	54_36p	+1	validated	missense	c.1820	p.E607V	0.118	NULL	HMMSmart_SM00758,HMMPfam_PA14,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518276	7518276	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	17	7518276	7518276	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.730	p.G244S	1.000	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
NUP210	23225	genome.wustl.edu	36	3	13382548	13382548	+	Silent	SNP	T	T	G	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	3	13382548	13382548	T	G	SNP	NUP210	NM_024923	human	genbank	54_36p	-1	reviewed	silent	c.1830	p.V610	0.850	NULL	superfamily_Invasin/intimin cell-adhesion fragments,HMMPfam_Big_2,HMMSmart_SM00635	-	no_errors
TRIO	7204	genome.wustl.edu	36	5	14422481	14422481	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	5	14422481	14422481	A	T	SNP	TRIO	NM_007118	human	genbank	54_36p	+1	validated	splice_site	c.3067-2	e18-2	1.000	-	-	-	no_errors
LOC645864	645864	genome.wustl.edu	36	X	16099229	16099229	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	X	16099229	16099229	G	A	SNP	LOC645864	XM_001130425	human	genbank	54_36p	+1	model	missense	c.1166	p.R389H	0.039	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
SPEN	23013	genome.wustl.edu	36	1	16135070	16135070	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	1	16135070	16135070	G	T	SNP	SPEN	NM_015001	human	genbank	54_36p	+1	reviewed	missense	c.9748	p.V3250F	0.050	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC	-	no_errors
PLCL2	23228	genome.wustl.edu	36	3	17027699	17027699	+	Silent	SNP	T	T	G	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	3	17027699	17027699	T	G	SNP	PLCL2	NM_015184	human	genbank	54_36p	+1	validated	silent	c.1479	p.S493	0.105	superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
ZNF645	158506	genome.wustl.edu	36	X	22201235	22201235	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	X	22201235	22201235	G	C	SNP	ZNF645	NM_152577	human	genbank	54_36p	+1	provisional	missense	c.206	p.R69P	0.998	superfamily_SSF57850,HMMSmart_RING	PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57850,HMMSmart_RING,PatternScan_ZF_RING_1,HMMSmart_ZnF_C2H2	-	no_errors
KIAA0528	9847	genome.wustl.edu	36	12	22526933	22526933	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	12	22526933	22526933	A	C	SNP	KIAA0528	NM_014802	human	genbank	54_36p	-1	predicted	nonsense	c.1562	p.L521*	0.988	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
CST9L	128821	genome.wustl.edu	36	20	23496889	23496889	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	20	23496889	23496889	C	A	SNP	CST9L	NM_080610	human	genbank	54_36p	-1	reviewed	missense	c.199	p.A67S	0.243	superfamily_Cystatin/monellin,HMMPfam_Cystatin	superfamily_Cystatin/monellin,HMMPfam_Cystatin	-	no_errors
NCOA1	8648	genome.wustl.edu	36	2	24787366	24787366	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	2	24787366	24787366	G	A	SNP	NCOA1	NM_003743	human	genbank	54_36p	+1	reviewed	silent	c.2481	p.L827	1.000	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_SRC-1,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_Nuc_rec_co-act,HMMPfam_DUF1518	-	no_errors
NEK10	152110	genome.wustl.edu	36	3	27308078	27308078	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	3	27308078	27308078	A	G	SNP	NEK10	ENST00000341435	human	ensembl	54_36p	-1	known	silent	c.1377	p.L459	1.000	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
KRTCAP3	200634	genome.wustl.edu	36	2	27519255	27519255	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	2	27519255	27519255	C	G	SNP	KRTCAP3	NM_173853	human	genbank	54_36p	+1	provisional	missense	c.256	p.L86V	0.999	NULL	NULL	-	no_errors
CHRM5	1133	genome.wustl.edu	36	15	32142360	32142360	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	15	32142360	32142360	G	C	SNP	CHRM5	NM_012125	human	genbank	54_36p	+1	validated	missense	c.150	p.L50F	0.990	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
C11orf74	119710	genome.wustl.edu	36	11	36588277	36588277	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	11	36588277	36588277	A	C	SNP	C11orf74	NM_138787	human	genbank	54_36p	+1	predicted	missense	c.48	p.L16F	0.717	NULL	NULL	-	no_errors
ANK1	286	genome.wustl.edu	36	8	41666936	41666936	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	8	41666936	41666936	C	T	SNP	ANK1	NM_020476	human	genbank	54_36p	-1	reviewed	missense	c.4070	p.C1357Y	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_ZU5,HMMSmart_SM00218,HMMSmart_SM00005,superfamily_DEATH domain,HMMPfam_Death	-	no_errors
MRPL10	124995	genome.wustl.edu	36	17	43260921	43260921	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	17	43260921	43260921	G	C	SNP	MRPL10	NM_145255	human	genbank	54_36p	-1	reviewed	missense	c.167	p.P56R	1.000	NULL	NULL	-	no_errors
CD40	958	genome.wustl.edu	36	20	44190381	44190381	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	20	44190381	44190381	G	T	SNP	CD40	NM_001250	human	genbank	54_36p	+1	reviewed	missense	c.652	p.V218L	0.001	NULL	superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,PatternScan_EGF_2	-	no_errors
TIMM50	92609	genome.wustl.edu	36	19	44663330	44663330	+	Silent	SNP	C	C	G	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	19	44663330	44663330	C	G	SNP	TIMM50	NM_001001563	human	genbank	54_36p	+1	validated	silent	c.306	p.R102	0.995	NULL	superfamily_SSF56784,HMMPfam_NIF,HMMSmart_CPDc	-	no_errors
ADCK4	79934	genome.wustl.edu	36	19	45903145	45903145	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	19	45903145	45903145	C	T	SNP	ADCK4	NM_024876	human	genbank	54_36p	-1	validated	missense	c.415	p.A139T	0.996	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_ABC1	-	no_errors
THSD1P	374500	genome.wustl.edu	36	13	51658918	51658918	+	RNA	SNP	G	A	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	13	51658918	51658918	G	A	SNP	THSD1P	NR_002816	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.252	-	-	-	pseudogene
PODN	127435	genome.wustl.edu	36	1	53312905	53312905	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	1	53312905	53312905	A	G	SNP	PODN	NM_153703	human	genbank	54_36p	+1	validated	missense	c.590	p.N197S	1.000	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,superfamily_SSF52047	-	no_errors
GYS1	2997	genome.wustl.edu	36	19	54188116	54188116	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	19	54188116	54188116	G	A	SNP	GYS1	NM_002103	human	genbank	54_36p	-1	provisional	silent	c.66	p.F22	1.000	NULL	HMMPfam_Glycogen_syn,superfamily_SSF53756	-	no_errors
MYH14	79784	genome.wustl.edu	36	19	55504858	55504858	+	Nonstop_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	19	55504858	55504858	G	C	SNP	MYH14	NM_001077186	human	genbank	54_36p	+1	reviewed	nonstop	c.6011	p.*2004S	0.212	NULL	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_tail_1,superfamily_Prefoldin	-	no_errors
SBK2	0	genome.wustl.edu	36	19	60739221	60739221	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	19	60739221	60739221	C	A	SNP	SBK2	NM_001101401	human	genbank	54_36p	-1	provisional	missense	c.253	p.G85C	1.000	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ZNF417	147687	genome.wustl.edu	36	19	63112305	63112305	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	19	63112305	63112305	A	G	SNP	ZNF417	NM_152475	human	genbank	54_36p	-1	validated	missense	c.1153	p.C385R	0.983	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
TLE3	7090	genome.wustl.edu	36	15	68137570	68137570	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	15	68137570	68137570	G	A	SNP	TLE3	NM_005078	human	genbank	54_36p	-1	validated	missense	c.1033	p.P345S	0.836	NULL	HMMPfam_TLE_N,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
SDK2	54549	genome.wustl.edu	36	17	68872999	68872999	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	17	68872999	68872999	G	A	SNP	SDK2	ENST00000334543	human	ensembl	54_36p	-1	known	silent	c.4335	p.P1445	0.097	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
HCN4	10021	genome.wustl.edu	36	15	71409021	71409021	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	15	71409021	71409021	G	A	SNP	HCN4	NM_005477	human	genbank	54_36p	-1	reviewed	silent	c.1536	p.H512	0.998	superfamily_SSF81324,HMMPfam_Ion_trans	PatternScan_CNMP_BINDING_2,HMMPfam_Ion_trans_N,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1	-	no_errors
RNF157	114804	genome.wustl.edu	36	17	71670239	71670239	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	17	71670239	71670239	G	C	SNP	RNF157	NM_052916	human	genbank	54_36p	-1	validated	missense	c.781	p.Q261E	1.000	superfamily_RING/U-box	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
DMRTC1	63947	genome.wustl.edu	36	X	72011415	72011415	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	X	72011415	72011415	C	A	SNP	DMRTC1	NM_033053	human	genbank	54_36p	-1	validated	missense	c.226	p.D76Y	0.000	NULL	NULL	-	no_errors
TNPO1	3842	genome.wustl.edu	36	5	72221491	72221491	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	5	72221491	72221491	A	T	SNP	TNPO1	NM_002270	human	genbank	54_36p	+1	reviewed	missense	c.1652	p.D551V	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_IBN_N,HMMPfam_HEAT	-	no_errors
NAV3	89795	genome.wustl.edu	36	12	76925083	76925083	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	12	76925083	76925083	G	A	SNP	NAV3	NM_014903	human	genbank	54_36p	+1	validated	missense	c.1634	p.S545N	0.002	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	-	no_errors
DOPEY1	23033	genome.wustl.edu	36	6	83902211	83902211	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	6	83902211	83902211	G	A	SNP	DOPEY1	NM_015018	human	genbank	54_36p	+1	validated	missense	c.3025	p.V1009I	1.000	NULL	HMMPfam_Dopey_N	-	no_errors
DDAH1	23576	genome.wustl.edu	36	1	85559754	85559754	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	1	85559754	85559754	G	A	SNP	DDAH1	NM_012137	human	genbank	54_36p	-1	reviewed	missense	c.827	p.S276L	0.996	HMMPfam_Amidinotransf,superfamily_Pentein	HMMPfam_Amidinotransf,superfamily_Pentein	-	no_errors
TLL2	7093	genome.wustl.edu	36	10	98123507	98123507	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	10	98123507	98123507	T	G	SNP	TLL2	NM_012465	human	genbank	54_36p	-1	reviewed	missense	c.2498	p.H833P	1.000	superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB	PatternScan_EGF_1,superfamily_SSF55486,HMMSmart_ZnMc,HMMPfam_Astacin,PatternScan_ZINC_PROTEASE,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,PatternScan_EGF_CA,HMMSmart_EGF_CA,HMMPfam_EGF_CA,superfamily_SSF57196,PatternScan_EGF_2,HMMPfam_EGF	-	no_errors
FBXO24	26261	genome.wustl.edu	36	7	100035708	100035708	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	7	100035708	100035708	G	C	SNP	FBXO24	NM_033506	human	genbank	54_36p	+1	reviewed	missense	c.1325	p.R442P	0.999	superfamily_RCC1/BLIP-II	superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,superfamily_RCC1/BLIP-II	-	no_errors
MUC17	140453	genome.wustl.edu	36	7	100466705	100466705	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	7	100466705	100466705	G	T	SNP	MUC17	NM_001040105	human	genbank	54_36p	+1	provisional	missense	c.5288	p.S1763I	0.002	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
ZFPM2	23414	genome.wustl.edu	36	8	106883812	106883812	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	8	106883812	106883812	C	A	SNP	ZFPM2	NM_012082	human	genbank	54_36p	+1	reviewed	missense	c.2326	p.P776T	0.281	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
KDELC2	143888	genome.wustl.edu	36	11	107850790	107850790	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	11	107850790	107850790	T	G	SNP	KDELC2	NM_153705	human	genbank	54_36p	-1	validated	missense	c.1498	p.K500Q	0.673	NULL	HMMPfam_Filamin,superfamily_E set domains,HMMSmart_SM00557,HMMSmart_SM00672	-	no_errors
LRCH2	57631	genome.wustl.edu	36	X	114320273	114320273	+	Silent	SNP	G	A	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	X	114320273	114320273	G	A	SNP	LRCH2	NM_020871	human	genbank	54_36p	-1	validated	silent	c.837	p.N279	1.000	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH	-	no_errors
NRAS	4893	genome.wustl.edu	36	1	115060209	115060209	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	1	115060209	115060209	A	C	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	nonsense	c.96	p.Y32*	1.000	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174	-	no_errors
SLC37A4	2542	genome.wustl.edu	36	11	118401989	118401989	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	11	118401989	118401989	G	T	SNP	SLC37A4	NM_001467	human	genbank	54_36p	-1	validated	missense	c.883	p.Q295K	0.012	NULL	superfamily_MFS general substrate transporter,HMMPfam_MFS_1,PatternScan_GLPT	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
GLT1D1	144423	genome.wustl.edu	36	12	128033494	128033494	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	12	128033494	128033494	G	A	SNP	GLT1D1	NM_144669	human	genbank	54_36p	+1	provisional	missense	c.707	p.G236E	0.014	superfamily_SSF53756,HMMPfam_Glycos_transf_1	superfamily_SSF53756,HMMPfam_Glycos_transf_1	-	no_errors
PCDHGA4	56111	genome.wustl.edu	36	5	140716806	140716806	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	5	140716806	140716806	G	A	SNP	PCDHGA4	NM_018917	human	genbank	54_36p	+1	reviewed	missense	c.1855	p.V619M	0.310	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
LRP1B	53353	genome.wustl.edu	36	2	141703287	141703287	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	2	141703287	141703287	A	C	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.785	p.I262S	0.935	superfamily_SSF63825,HMMSmart_LY	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,HMMPfam_EGF,HMMPfam_NHL,HMMPfam_EGF_2,PatternScan_EGF_1	-	no_errors
ANKRD35	148741	genome.wustl.edu	36	1	144278128	144278128	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	1	144278128	144278128	T	C	SNP	ANKRD35	NM_144698	human	genbank	54_36p	+1	validated	missense	c.2873	p.L958P	1.000	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150592414	150592414	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	1	150592414	150592414	G	C	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.4472	p.S1491C	0.002	NULL	superfamily_SSF47473,HMMPfam_S_100,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,HMMPfam_Filaggrin	-	no_errors
AKAP12	9590	genome.wustl.edu	36	6	151714300	151714300	+	Silent	SNP	T	T	G	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	6	151714300	151714300	T	G	SNP	AKAP12	NM_005100	human	genbank	54_36p	+1	reviewed	silent	c.3081	p.G1027	0.000	NULL	HMMPfam_WSK,HMMPfam_RII_binding_1	-	no_errors
DOCK2	1794	genome.wustl.edu	36	5	169048875	169048875	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	5	169048875	169048875	A	G	SNP	DOCK2	NM_004946	human	genbank	54_36p	+1	validated	missense	c.803	p.K268R	1.000	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Cytochrome c	-	no_errors
CACNA1E	777	genome.wustl.edu	36	1	179719649	179719649	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	1	179719649	179719649	C	G	SNP	CACNA1E	NM_000721	human	genbank	54_36p	+1	reviewed	missense	c.146	p.T49S	1.000	superfamily_Voltage-gated potassium channels	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
FAT1	2195	genome.wustl.edu	36	4	187866974	187866974	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	4	187866974	187866974	G	C	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	silent	c.1002	p.L334	1.000	superfamily_Cadherin-like,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_CADHERIN_1,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors
LGR6	59352	genome.wustl.edu	36	1	200554502	200554502	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	1	200554502	200554502	G	T	SNP	LGR6	NM_001017403	human	genbank	54_36p	+1	reviewed	silent	c.2448	p.L816	0.998	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_RNI-like,HMMSmart_SM00369,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00365,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
MIA3	375056	genome.wustl.edu	36	1	220868695	220868695	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	1	220868695	220868695	C	A	SNP	MIA3	NM_198551	human	genbank	54_36p	+1	validated	missense	c.1510	p.L504I	0.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_2	-	no_errors
DNAH11	8701	genome.wustl.edu	36	7	21693507	21693525	+	Splice_Site	DEL	CCTCACTTTATCATTTAGT	CCTCACTTTATCATTTAGT	-	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	CCTCACTTTATCATTTAGT	CCTCACTTTATCATTTAGT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	7	21693507	21693525	CCTCACTTTATCATTTAGT	-	DEL	DNAH11	ENST00000328843	human	ensembl	54_36p	+1	known	splice_site_del	c.5800-18_5800-1	e35-1	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.002:0.000:0.001:0.349:0.419:0.419:1.000:1.000:1.000	-	-	(deletion:intron[21693399,21693524], cds_exon[21693525,21693670])	no_errors
RPLP0-like	220717	genome.wustl.edu	36	2	38563545	38563547	+	RNA	DEL	AAT	AAT	-	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	AAT	AAT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	2	38563545	38563547	AAT	-	DEL	RPLP0-like	XR_017813	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.003:0.003:0.002	-	-	(deletion:rna[38562421,38563591])	pseudogene
SLC11A2	4891	genome.wustl.edu	36	12	49688546	49688559	+	Frame_Shift_Del	DEL	TCTTCTCATTAAAG	TCTTCTCATTAAAG	-	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	TCTTCTCATTAAAG	TCTTCTCATTAAAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	12	49688546	49688559	TCTTCTCATTAAAG	-	DEL	SLC11A2	NM_000617	human	genbank	54_36p	-1	validated	frame_shift_del	c.163_150	p.F51fs	0.981:0.985:0.996:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_Nramp	(deletion:cds_exon[49688526,49688674])	no_errors
REXO1L7P	441363	genome.wustl.edu	36	8	86909940	86909940	+	RNA	DEL	C	C	-	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	8	86909940	86909940	C	-	DEL	REXO1L7P	XR_041982	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.001	-	-	(deletion:rna[86908388,86910219])	pseudogene
uc010msa.1	0	genome.wustl.edu	36	9	97815111	97815131	+	In_Frame_Del	DEL	TGATGAGAGTCTTAGTAAACT	TGATGAGAGTCTTAGTAAACT	-	novel	unknown	TCGA-61-1913-01A-01W-0639-09	TCGA-61-1913-11A-01W-0640-09	TGATGAGAGTCTTAGTAAACT	TGATGAGAGTCTTAGTAAACT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	d16824ed-060b-4af6-9d82-6923219decee	2e7ad573-09da-488a-9dbc-38d19a37e456	9	97815111	97815131	TGATGAGAGTCTTAGTAAACT	-	DEL	uc010msa.1	ENST00000407474	human	ensembl	54_36p	+1	known	in_frame_del	c.1188_1208	p.DESLSKL397in_frame_del	0.996:0.984:0.895:0.599:0.999:1.000:1.000:1.000:1.000:0.997:1.000:1.000:0.994:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	NULL	(deletion:cds_exon[97814328,97815306])	no_errors
