Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
KANK1	23189	genome.wustl.edu	36	9	702314	702314	+	Silent	SNP	G	T	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	9	702314	702314	G	T	SNP	KANK1	NM_015158	human	genbank	54_36p	+1	reviewed	silent	c.1548	p.V516	1.000	superfamily_ANK	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
PCGF3	10336	genome.wustl.edu	36	4	717539	717539	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	4	717539	717539	C	G	SNP	PCGF3	NM_006315	human	genbank	54_36p	+1	reviewed	missense	c.70	p.L24V	1.000	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
PSMF1	9491	genome.wustl.edu	36	20	1063936	1063936	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	20	1063936	1063936	C	T	SNP	PSMF1	NM_006814	human	genbank	54_36p	+1	reviewed	missense	c.538	p.R180W	0.999	NULL	HMMPfam_PI31_Prot_Reg	-	no_errors
SDCBP2	27111	genome.wustl.edu	36	20	1241341	1241341	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	20	1241341	1241341	G	C	SNP	SDCBP2	NM_080489	human	genbank	54_36p	-1	validated	missense	c.450	p.D150E	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
BTBD12	84464	genome.wustl.edu	36	16	3598571	3598571	+	Silent	SNP	T	T	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	16	3598571	3598571	T	C	SNP	BTBD12	NM_032444	human	genbank	54_36p	-1	provisional	silent	c.396	p.E132	0.000	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518913	7518913	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	17	7518913	7518913	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.661	p.E221*	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
ENSG00000197320	0	genome.wustl.edu	36	7	9734278	9734278	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	7	9734278	9734278	A	G	SNP	ENSG00000197320	ENST00000361014	human	ensembl	54_36p	+1	known	silent	c.1242	p.E414	0.998	NULL	HMMPfam_A2M_N	-	no_stop_codon
KLRK1	22914	genome.wustl.edu	36	12	10423337	10423337	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	12	10423337	10423337	G	C	SNP	KLRK1	NM_007360	human	genbank	54_36p	-1	reviewed	missense	c.253	p.Q85E	0.004	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors
TNFRSF8	943	genome.wustl.edu	36	1	12079748	12079748	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	1	12079748	12079748	T	A	SNP	TNFRSF8	NM_001243	human	genbank	54_36p	+1	reviewed	missense	c.155	p.L52Q	0.000	HMMPfam_TNFR_c6,HMMSmart_SM00208,superfamily_TNF receptor-like	HMMPfam_TNFR_c6,HMMSmart_SM00208,superfamily_TNF receptor-like,PatternScan_TNFR_NGFR_1	-	no_errors
NUP210	23225	genome.wustl.edu	36	3	13382537	13382537	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	3	13382537	13382537	G	C	SNP	NUP210	NM_024923	human	genbank	54_36p	-1	reviewed	missense	c.1841	p.A614G	0.466	NULL	superfamily_Invasin/intimin cell-adhesion fragments,HMMPfam_Big_2,HMMSmart_SM00635	-	no_errors
LIPI	149998	genome.wustl.edu	36	21	14475976	14475976	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	21	14475976	14475976	A	C	SNP	LIPI	NM_198996	human	genbank	54_36p	-1	validated	missense	c.680	p.V227G	1.000	HMMPfam_Lipase,superfamily_SSF53474	HMMPfam_Lipase,superfamily_SSF53474	-	no_errors
SLC6A6	6533	genome.wustl.edu	36	3	14483105	14483105	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	3	14483105	14483105	G	A	SNP	SLC6A6	NM_003043	human	genbank	54_36p	+1	validated	silent	c.810	p.A270	0.280	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
IGSF22	283284	genome.wustl.edu	36	11	18695039	18695039	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	11	18695039	18695039	T	G	SNP	IGSF22	NM_173588	human	genbank	54_36p	-1	validated	missense	c.1058	p.K353T	0.985	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
DENND4C	55667	genome.wustl.edu	36	9	19336042	19336042	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	9	19336042	19336042	G	C	SNP	DENND4C	NM_017925	human	genbank	54_36p	+1	provisional	missense	c.2420	p.R807T	1.000	NULL	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_PPR	-	no_errors
ZMYM2	7750	genome.wustl.edu	36	13	19465974	19465974	+	Silent	SNP	T	T	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	13	19465974	19465974	T	C	SNP	ZMYM2	NM_003453	human	genbank	54_36p	+1	validated	silent	c.762	p.T254	1.000	NULL	HMMPfam_zf-FCS,HMMSmart_TRASH	-	no_errors
RIN2	54453	genome.wustl.edu	36	20	19903642	19903642	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	20	19903642	19903642	C	G	SNP	RIN2	NM_018993	human	genbank	54_36p	+1	reviewed	missense	c.973	p.L325V	1.000	NULL	superfamily_SH2 domain,superfamily_VPS9 domain (Pfam 02204),HMMSmart_SM00167,HMMPfam_VPS9,HMMPfam_RA,HMMSmart_SM00314	-	no_errors
LZTS1	11178	genome.wustl.edu	36	8	20156662	20156662	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	8	20156662	20156662	G	T	SNP	LZTS1	NM_021020	human	genbank	54_36p	-1	validated	missense	c.311	p.P104H	0.982	NULL	HMMPfam_Fez1	-	no_errors
NEBL	10529	genome.wustl.edu	36	10	21501362	21501362	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	10	21501362	21501362	G	A	SNP	NEBL	NM_213569	human	genbank	54_36p	-1	validated	silent	c.120	p.N40	1.000	HMMSmart_LIM,HMMPfam_LIM	superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,HMMSmart_NEBU,HMMPfam_Nebulin,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3	-	no_errors
AP1G2	8906	genome.wustl.edu	36	14	23106243	23106243	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	14	23106243	23106243	C	T	SNP	AP1G2	NM_003917	human	genbank	54_36p	-1	reviewed	missense	c.121	p.D41N	1.000	superfamily_ARM-type_fold,HMMPfam_Adaptin_N	superfamily_ARM-type_fold,HMMPfam_Adaptin_N,superfamily_Clath_adapt,HMMPfam_Alpha_adaptinC2,HMMSmart_Alpha_adaptinC2	-	no_errors
IGF2BP3	10643	genome.wustl.edu	36	7	23348229	23348229	+	Silent	SNP	A	A	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	7	23348229	23348229	A	C	SNP	IGF2BP3	NM_006547	human	genbank	54_36p	-1	reviewed	silent	c.1182	p.T394	0.997	superfamily_Eukaryotic type KH-domain (KH-domain type I)	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1	-	no_errors
ZNF337	26152	genome.wustl.edu	36	20	25605433	25605433	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	20	25605433	25605433	T	C	SNP	ZNF337	NM_015655	human	genbank	54_36p	-1	validated	missense	c.491	p.E164G	0.056	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
HS3ST4	9951	genome.wustl.edu	36	16	26054666	26054666	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	16	26054666	26054666	C	T	SNP	HS3ST4	ENST00000331351	human	ensembl	54_36p	+1	known	silent	c.967	p.L323	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors
CLN3	1201	genome.wustl.edu	36	16	28406549	28406549	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	16	28406549	28406549	C	T	SNP	CLN3	ENST00000333496	human	ensembl	54_36p	-1	known	missense	c.140	p.R47Q	0.915	NULL	NULL	-	no_errors
SCAND3	114821	genome.wustl.edu	36	6	28648533	28648533	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	6	28648533	28648533	A	G	SNP	SCAND3	NM_052923	human	genbank	54_36p	-1	provisional	silent	c.3112	p.L1038	1.000	NULL	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_RNaseH_fold,HMMPfam_rve,HMMPfam_hATC	-	no_errors
TRPM1	4308	genome.wustl.edu	36	15	29125708	29125708	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	15	29125708	29125708	C	T	SNP	TRPM1	NM_002420	human	genbank	54_36p	-1	reviewed	silent	c.1719	p.L573	0.941	NULL	HMMPfam_Ion_trans	-	no_errors
FAM57B	83723	genome.wustl.edu	36	16	29944582	29944582	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	16	29944582	29944582	G	C	SNP	FAM57B	NM_031478	human	genbank	54_36p	-1	validated	missense	c.506	p.T169R	1.000	HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8	HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8	-	no_errors
SNRNP40	9410	genome.wustl.edu	36	1	31537376	31537376	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	1	31537376	31537376	C	T	SNP	SNRNP40	NM_004814	human	genbank	54_36p	-1	reviewed	silent	c.336	p.V112	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1	-	no_errors
NOTCH4	4855	genome.wustl.edu	36	6	32278069	32278069	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	6	32278069	32278069	G	A	SNP	NOTCH4	NM_004557	human	genbank	54_36p	-1	reviewed	missense	c.3517	p.P1173S	0.013	superfamily_EGF/Laminin,HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain	HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_NODP,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	no_errors
AQR	9716	genome.wustl.edu	36	15	32997864	32997864	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	15	32997864	32997864	C	G	SNP	AQR	NM_014691	human	genbank	54_36p	-1	validated	missense	c.1229	p.R410P	1.000	NULL	superfamily_SSF52540	-	no_errors
SYNGAP1	8831	genome.wustl.edu	36	6	33516561	33516561	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	6	33516561	33516561	C	T	SNP	SYNGAP1	NM_006772	human	genbank	54_36p	+1	validated	missense	c.1709	p.A570V	0.960	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP	HMMSmart_SM00233,superfamily_PH domain-like,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	-	no_errors
ZMYM4	9202	genome.wustl.edu	36	1	35608803	35608803	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	1	35608803	35608803	C	T	SNP	ZMYM4	NM_005095	human	genbank	54_36p	+1	validated	missense	c.1169	p.S390L	1.000	HMMPfam_zf-FCS,HMMSmart_SM00746	HMMPfam_zf-FCS,HMMSmart_SM00746,PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors
NPR2	4882	genome.wustl.edu	36	9	35791954	35791954	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	9	35791954	35791954	C	G	SNP	NPR2	NM_003995	human	genbank	54_36p	+1	reviewed	missense	c.1589	p.A530G	1.000	HMMSmart_SM00220,HMMSmart_SM00219,superfamily_Protein kinase-like (PK-like)	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_ANF_RECEPTORS,HMMSmart_SM00220,HMMSmart_SM00219,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
DCLK3	85443	genome.wustl.edu	36	3	36754140	36754140	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	3	36754140	36754140	C	T	SNP	DCLK3	NM_033403	human	genbank	54_36p	-1	validated	missense	c.1015	p.G339S	0.001	superfamily_Kinase_like	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ANKRD30A	91074	genome.wustl.edu	36	10	37473962	37473962	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	10	37473962	37473962	A	T	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	+1	validated	missense	c.1259	p.E420V	0.011	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,PatternScan_ASP_PROTEASE	-	no_errors
DSCR4	10281	genome.wustl.edu	36	21	38348920	38348920	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	21	38348920	38348920	C	T	SNP	DSCR4	NM_005867	human	genbank	54_36p	-1	reviewed	missense	c.256	p.A86T	0.000	NULL	NULL	-	no_errors
RICTOR	253260	genome.wustl.edu	36	5	39038396	39038396	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	5	39038396	39038396	A	G	SNP	RICTOR	NM_152756	human	genbank	54_36p	-1	validated	silent	c.390	p.A130	0.998	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_RasGEF_N	-	no_errors
MEI1	150365	genome.wustl.edu	36	22	40502081	40502081	+	Silent	SNP	A	A	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	22	40502081	40502081	A	C	SNP	MEI1	NM_152513	human	genbank	54_36p	+1	validated	silent	c.2574	p.T858	0.555	NULL	superfamily_ARM repeat	-	no_errors
SPG11	80208	genome.wustl.edu	36	15	42663446	42663446	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	15	42663446	42663446	G	A	SNP	SPG11	NM_025137	human	genbank	54_36p	-1	reviewed	silent	c.5724	p.V1908	0.106	NULL	PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
CNTNAP3B	728577	genome.wustl.edu	36	9	43789824	43789824	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	9	43789824	43789824	A	C	SNP	CNTNAP3B	XM_001128489	human	genbank	54_36p	+1	model	missense	c.1733	p.Y578S	0.998	HMMSmart_SM00181,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Fibrinogen C-terminal domain-like	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like,PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors
HECTD3	79654	genome.wustl.edu	36	1	45242193	45242193	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	1	45242193	45242193	C	A	SNP	HECTD3	NM_024602	human	genbank	54_36p	-1	validated	missense	c.2350	p.D784Y	1.000	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_HECT	superfamily_Galactose-binding domain-like,HMMPfam_APC10,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_HECT	-	no_errors
LRCH1	23143	genome.wustl.edu	36	13	46201053	46201053	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	13	46201053	46201053	T	C	SNP	LRCH1	NM_015116	human	genbank	54_36p	+1	provisional	missense	c.1835	p.L612P	1.000	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00364,PatternScan_PTS_HPR_SER,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	-	no_errors
PTPN23	25930	genome.wustl.edu	36	3	47425469	47425469	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	3	47425469	47425469	C	T	SNP	PTPN23	NM_015466	human	genbank	54_36p	+1	validated	silent	c.1530	p.F510	1.000	NULL	HMMPfam_BRO1,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
ADCY6	112	genome.wustl.edu	36	12	47453681	47453681	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	12	47453681	47453681	A	G	SNP	ADCY6	NM_015270	human	genbank	54_36p	-1	reviewed	missense	c.2459	p.M820T	0.989	NULL	HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors
B4GALT5	9334	genome.wustl.edu	36	20	47689679	47689679	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	20	47689679	47689679	T	C	SNP	B4GALT5	NM_004776	human	genbank	54_36p	-1	validated	missense	c.860	p.N287S	1.000	superfamily_SSF53448,HMMPfam_Galactosyl_T_2	superfamily_SSF53448,HMMPfam_Galactosyl_T_2	-	no_errors
TMEM189-UBE2V1	387522	genome.wustl.edu	36	20	48193484	48193484	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	20	48193484	48193484	G	A	SNP	TMEM189-UBE2V1	NM_199203	human	genbank	54_36p	-1	reviewed	missense	c.203	p.A68V	1.000	NULL	HMMPfam_Kua-UEV1_localn,superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	-	no_errors
SPPL2A	84888	genome.wustl.edu	36	15	48819318	48819318	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	15	48819318	48819318	C	T	SNP	SPPL2A	NM_032802	human	genbank	54_36p	-1	reviewed	splice_site	c.585-1	e6-1	0.946	-	-	-	no_errors
BSN	8927	genome.wustl.edu	36	3	49666222	49666222	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	3	49666222	49666222	C	G	SNP	BSN	NM_003458	human	genbank	54_36p	+1	validated	missense	c.4229	p.P1410R	0.008	NULL	HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF	-	no_errors
ITGA2	3673	genome.wustl.edu	36	5	52406020	52406020	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	5	52406020	52406020	G	C	SNP	ITGA2	NM_002203	human	genbank	54_36p	+1	reviewed	missense	c.2620	p.V874L	0.219	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
NCKAP1L	3071	genome.wustl.edu	36	12	53180676	53180676	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	12	53180676	53180676	G	T	SNP	NCKAP1L	NM_005337	human	genbank	54_36p	+1	reviewed	silent	c.306	p.R102	1.000	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
DHX29	54505	genome.wustl.edu	36	5	54614992	54614992	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	5	54614992	54614992	C	G	SNP	DHX29	NM_019030	human	genbank	54_36p	-1	validated	missense	c.1761	p.R587S	1.000	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors
BBS2	583	genome.wustl.edu	36	16	55088382	55088382	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	16	55088382	55088382	G	A	SNP	BBS2	NM_031885	human	genbank	54_36p	-1	reviewed	silent	c.1908	p.D636	1.000	NULL	superfamily_WD40 repeat-like,HMMPfam_FG-GAP	-	no_errors
IL31RA	133396	genome.wustl.edu	36	5	55240210	55240210	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	5	55240210	55240210	G	C	SNP	IL31RA	ENST00000396836	human	ensembl	54_36p	+1	known	missense	c.1715	p.R572T	0.004	NULL	HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_fn3	-	no_errors
EFEMP1	2202	genome.wustl.edu	36	2	55998861	55998861	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	2	55998861	55998861	T	A	SNP	EFEMP1	NM_001039348	human	genbank	54_36p	-1	reviewed	nonsense	c.127	p.K43*	1.000	superfamily_EGF/Laminin	superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
CNGB1	1258	genome.wustl.edu	36	16	56479296	56479296	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	16	56479296	56479296	C	T	SNP	CNGB1	NM_001297	human	genbank	54_36p	-1	validated	silent	c.3426	p.L1142	0.871	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors
TNFRSF11A	8792	genome.wustl.edu	36	18	58176524	58176524	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	18	58176524	58176524	C	T	SNP	TNFRSF11A	NM_003839	human	genbank	54_36p	+1	reviewed	missense	c.491	p.S164F	0.088	superfamily_SSF57586,HMMSmart_TNFR	superfamily_SSF57586,HMMPfam_TNFR_c6,HMMSmart_TNFR,PatternScan_TNFR_NGFR_1	-	no_errors
INTS5	80789	genome.wustl.edu	36	11	62171305	62171305	+	Silent	SNP	C	C	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	11	62171305	62171305	C	G	SNP	INTS5	NM_030628	human	genbank	54_36p	-1	provisional	silent	c.2823	p.L941	1.000	NULL	NULL	-	no_errors
STX5	6811	genome.wustl.edu	36	11	62349135	62349135	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	11	62349135	62349135	G	A	SNP	STX5	NM_003164	human	genbank	54_36p	-1	validated	nonsense	c.628	p.Q210*	1.000	superfamily_t-snare proteins	superfamily_t-snare proteins,HMMPfam_Syntaxin,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN	-	no_errors
MALAT1	378938	genome.wustl.edu	36	11	65026231	65026231	+	RNA	SNP	C	C	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	11	65026231	65026231	C	G	SNP	MALAT1	NR_002819	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.008	-	-	-	no_errors
LTBP3	4054	genome.wustl.edu	36	11	65067575	65067575	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	11	65067575	65067575	C	G	SNP	LTBP3	NM_021070	human	genbank	54_36p	-1	validated	missense	c.2375	p.G792A	0.006	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,superfamily_Fibril-assoc,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
RLTPR	146206	genome.wustl.edu	36	16	66238116	66238116	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	16	66238116	66238116	A	T	SNP	RLTPR	NM_001013838	human	genbank	54_36p	+1	provisional	splice_site	c.467-2	e7-2	0.998	-	-	-	no_errors
FBXL11	22992	genome.wustl.edu	36	11	66778366	66778366	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	11	66778366	66778366	G	A	SNP	FBXL11	NM_012308	human	genbank	54_36p	+1	reviewed	missense	c.3208	p.D1070N	1.000	superfamily_RNI-like,HMMSmart_SM00367	superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-CXXC,PatternScan_2FE2S_FER_1,HMMSmart_SM00249,PatternScan_ZF_PHD_1,HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367	-	no_errors
CTNNA3	29119	genome.wustl.edu	36	10	68051521	68051521	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	10	68051521	68051521	T	C	SNP	CTNNA3	NM_013266	human	genbank	54_36p	-1	validated	missense	c.1309	p.T437A	0.995	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
ENSG00000205152	0	genome.wustl.edu	36	16	68818176	68818176	+	Silent	SNP	T	T	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	16	68818176	68818176	T	A	SNP	ENSG00000205152	ENST00000378955	human	ensembl	54_36p	-1	known	silent	c.1800	p.I600	1.000	NULL	NULL	-	no_errors
CALB2	794	genome.wustl.edu	36	16	69963635	69963635	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	16	69963635	69963635	T	A	SNP	CALB2	NM_001740	human	genbank	54_36p	+1	reviewed	splice_site	c.171+2	e2+2	1.000	-	-	-	no_errors
LOC643159	643159	genome.wustl.edu	36	17	71733826	71733826	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	17	71733826	71733826	A	T	SNP	LOC643159	XM_928637	human	genbank	54_36p	-1	model	missense	c.657	p.S219R	1.000	NULL	HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC	-	pseudogene
RCN2	5955	genome.wustl.edu	36	15	75026866	75026866	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	15	75026866	75026866	G	A	SNP	RCN2	NM_002902	human	genbank	54_36p	+1	reviewed	missense	c.611	p.G204E	1.000	superfamily_EF-hand,HMMPfam_efhand,HMMSmart_SM00054,PatternScan_EF_HAND_1	HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_EF-hand	-	no_errors
CYSLTR1	10800	genome.wustl.edu	36	X	77414976	77414976	+	Silent	SNP	T	T	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	X	77414976	77414976	T	C	SNP	CYSLTR1	NM_006639	human	genbank	54_36p	-1	reviewed	silent	c.924	p.T308	1.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
SATL1	340562	genome.wustl.edu	36	X	84249181	84249181	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	X	84249181	84249181	G	A	SNP	SATL1	NM_001012980	human	genbank	54_36p	-1	provisional	missense	c.889	p.P297S	0.001	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors
LRIT2	340745	genome.wustl.edu	36	10	85971746	85971746	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	10	85971746	85971746	A	G	SNP	LRIT2	NM_001017924	human	genbank	54_36p	-1	validated	silent	c.1563	p.F521	0.189	NULL	HMMPfam_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors
ATP6V0D2	245972	genome.wustl.edu	36	8	87180338	87180338	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	8	87180338	87180338	G	A	SNP	ATP6V0D2	NM_152565	human	genbank	54_36p	+1	validated	silent	c.15	p.A5	0.590	NULL	superfamily_ATPase_V0/A0_c/d,HMMPfam_vATP-synt_AC39	-	no_errors
VWA3B	200403	genome.wustl.edu	36	2	98076030	98076030	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	2	98076030	98076030	C	G	SNP	VWA3B	NM_144992	human	genbank	54_36p	+1	provisional	missense	c.43	p.L15V	0.018	NULL	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA	-	no_errors
ENSG00000187900	0	genome.wustl.edu	36	3	99440060	99440060	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	3	99440060	99440060	A	G	SNP	ENSG00000187900	ENST00000341450	human	ensembl	54_36p	+1	known	missense	c.58	p.M20V	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
RAB40AL	0	genome.wustl.edu	36	X	102078935	102078935	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	X	102078935	102078935	C	T	SNP	RAB40AL	NM_001031834	human	genbank	54_36p	+1	provisional	silent	c.33	p.Y11	1.000	superfamily_SSF52540	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras,HMMSmart_SOCS,HMMPfam_SOCS_box	-	no_errors
MMP13	4322	genome.wustl.edu	36	11	102323888	102323888	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	11	102323888	102323888	C	A	SNP	MMP13	NM_002427	human	genbank	54_36p	-1	reviewed	missense	c.1153	p.A385S	1.000	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX	HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN	-	no_errors
ARL3	403	genome.wustl.edu	36	10	104455180	104455180	+	Silent	SNP	T	T	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	10	104455180	104455180	T	G	SNP	ARL3	NM_004311	human	genbank	54_36p	-1	reviewed	silent	c.60	p.I20	0.996	HMMSmart_ARF,superfamily_SSF52540,HMMPfam_Arf	HMMSmart_ARF,superfamily_SSF52540,HMMPfam_Arf,PatternScan_ARF	-	no_errors
FRMPD3	84443	genome.wustl.edu	36	X	106730450	106730450	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	X	106730450	106730450	T	C	SNP	FRMPD3	XM_042978	human	genbank	54_36p	+1	model	missense	c.2624	p.L875P	0.000	NULL	PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors
MCC	4163	genome.wustl.edu	36	5	112465350	112465350	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	5	112465350	112465350	G	T	SNP	MCC	NM_001085377	human	genbank	54_36p	-1	reviewed	missense	c.1383	p.D461E	1.000	HMMPfam_MCC-bdg_PDZ	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_MCC-bdg_PDZ	-	no_errors
ZNF618	114991	genome.wustl.edu	36	9	115818249	115818249	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	9	115818249	115818249	G	C	SNP	ZNF618	NM_133374	human	genbank	54_36p	+1	validated	missense	c.694	p.E232Q	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667,HMMPfam_hATC	-	no_errors
TLR4	7099	genome.wustl.edu	36	9	119516582	119516582	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	9	119516582	119516582	G	C	SNP	TLR4	NM_138554	human	genbank	54_36p	+1	reviewed	silent	c.2355	p.L785	0.987	superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors
IQUB	154865	genome.wustl.edu	36	7	122892187	122892187	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	7	122892187	122892187	G	A	SNP	IQUB	NM_178827	human	genbank	54_36p	-1	validated	missense	c.1694	p.A565V	0.967	NULL	HMMPfam_DUF2021,superfamily_Ubiquitin-like	-	no_errors
GPR37	2861	genome.wustl.edu	36	7	124174579	124174579	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	7	124174579	124174579	A	T	SNP	GPR37	NM_005302	human	genbank	54_36p	-1	provisional	missense	c.1078	p.F360I	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
ACTRT1	139741	genome.wustl.edu	36	X	127013011	127013011	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	X	127013011	127013011	A	C	SNP	ACTRT1	NM_138289	human	genbank	54_36p	-1	provisional	missense	c.856	p.C286G	1.000	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	HMMPfam_Actin,superfamily_SSF53067,HMMSmart_ACTIN	-	no_errors
SAP130	79595	genome.wustl.edu	36	2	128474172	128474172	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	2	128474172	128474172	C	T	SNP	SAP130	NM_024545	human	genbank	54_36p	-1	validated	missense	c.1114	p.G372S	1.000	NULL	NULL	-	no_errors
MEST	4232	genome.wustl.edu	36	7	129925525	129925525	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	7	129925525	129925525	C	G	SNP	MEST	NM_002402	human	genbank	54_36p	+1	reviewed	missense	c.506	p.T169S	0.968	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1	-	no_errors
CREB3L2	64764	genome.wustl.edu	36	7	137251169	137251169	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	7	137251169	137251169	G	A	SNP	CREB3L2	NM_194071	human	genbank	54_36p	-1	validated	missense	c.449	p.S150F	0.792	NULL	superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC	-	no_errors
RBM27	54439	genome.wustl.edu	36	5	145597157	145597157	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	5	145597157	145597157	A	G	SNP	RBM27	ENST00000265271	human	ensembl	54_36p	+1	known	silent	c.1248	p.L416	1.000	NULL	superfamily_SSF101233,HMMPfam_zf-CCCH,superfamily_SSF54928,HMMSmart_RRM	-	no_errors
CHRNB2	1141	genome.wustl.edu	36	1	152811017	152811017	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	1	152811017	152811017	G	A	SNP	CHRNB2	NM_000748	human	genbank	54_36p	+1	reviewed	missense	c.1094	p.R365Q	0.707	superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors
SYT11	23208	genome.wustl.edu	36	1	154104548	154104548	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	1	154104548	154104548	C	A	SNP	SYT11	NM_152280	human	genbank	54_36p	+1	validated	missense	c.203	p.T68N	1.000	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
PAXIP1	22976	genome.wustl.edu	36	7	154398932	154398932	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	7	154398932	154398932	C	T	SNP	PAXIP1	NM_007349	human	genbank	54_36p	-1	reviewed	missense	c.481	p.V161M	1.000	HMMPfam_BRCT,superfamily_BRCT domain,HMMSmart_SM00292	superfamily_BRCT domain,HMMPfam_BRCT,HMMSmart_SM00292	-	no_errors
SLC22A2	6582	genome.wustl.edu	36	6	160586542	160586542	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	6	160586542	160586542	C	G	SNP	SLC22A2	NM_003058	human	genbank	54_36p	-1	reviewed	missense	c.983	p.G328A	0.000	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
B3GALNT1	8706	genome.wustl.edu	36	3	162286966	162286966	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	3	162286966	162286966	C	T	SNP	B3GALNT1	NM_001038628	human	genbank	54_36p	-1	reviewed	missense	c.271	p.V91M	0.983	NULL	HMMPfam_Galactosyl_T	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179156780	179156780	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	2	179156780	179156780	T	G	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.53318	p.Y17773S	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
ASNSD1	54529	genome.wustl.edu	36	2	190239299	190239299	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	2	190239299	190239299	G	T	SNP	ASNSD1	NM_019048	human	genbank	54_36p	+1	validated	nonsense	c.196	p.E66*	1.000	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_Asn_synthase	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	214486626	214486626	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	1	214486626	214486626	G	T	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	silent	c.2733	p.T911	0.001	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
EXOC8	149371	genome.wustl.edu	36	1	229538492	229538492	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	1	229538492	229538492	G	A	SNP	EXOC8	NM_175876	human	genbank	54_36p	-1	validated	silent	c.1623	p.F541	1.000	NULL	HMMPfam_Vps51,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235936871	235936871	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	1	235936871	235936871	G	A	SNP	RYR2	NM_001035	human	genbank	54_36p	+1	reviewed	splice_site	c.9581-1	e68-1	1.000	-	-	-	no_errors
MKL2	57496	genome.wustl.edu	36	16	14248349	14248350	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	AG	AG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	16	14248349	14248350	AG	-	DEL	MKL2	NM_014048	human	genbank	54_36p	+1	validated	frame_shift_del	c.1731_1732	p.K579fs	0.980:1.000	NULL	HMMSmart_RPEL,superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP	(deletion:cds_exon[14247831,14248715])	no_errors
LOC642131	0	genome.wustl.edu	36	15	19974379	19974388	+	Frame_Shift_Del	DEL	GACTCTTGAG	GACTCTTGAG	-	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	GACTCTTGAG	GACTCTTGAG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	15	19974379	19974388	GACTCTTGAG	-	DEL	LOC642131	XM_001716834	human	genbank	54_36p	-1	model	frame_shift_del	c.277_268	p.L90fs	0.066:0.002:0.001:0.002:0.034:0.115:0.111:0.126:0.181:0.163	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	(deletion:cds_exon[19974025,19974588])	no_errors
TBC1D22B	55633	genome.wustl.edu	36	6	37355143	37355143	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	6	37355143	37355143	A	-	DEL	TBC1D22B	NM_017772	human	genbank	54_36p	+1	validated	frame_shift_del	c.199	p.S67fs	1.000	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	(deletion:cds_exon[37355058,37355365])	no_errors
COL9A2	1298	genome.wustl.edu	36	1	40541070	40541071	+	Splice_Site	INS	-	-	GGAG	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	1	40541070	40541071	-	GGAG	INS	COL9A2	NM_001852	human	genbank	54_36p	-1	reviewed	splice_site_ins	c.1604-3_1604-2	e30-2	1.000:0.994	-	-	-	no_errors
FSCN3	29999	genome.wustl.edu	36	7	127025752	127025752	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	7	127025752	127025752	G	-	DEL	FSCN3	NM_020369	human	genbank	54_36p	+1	provisional	frame_shift_del	c.988	p.H331fs	0.303	superfamily_Actin_crosslink,HMMPfam_Fascin	superfamily_Actin_crosslink,HMMPfam_Fascin	(deletion:cds_exon[127025725,127025884])	no_errors
ZNF687	57592	genome.wustl.edu	36	1	149526104	149526115	+	In_Frame_Del	DEL	GCTCAGGCTCCA	GCTCAGGCTCCA	-	novel	unknown	TCGA-61-1915-01A-01W-0639-09	TCGA-61-1915-11A-01W-0640-09	GCTCAGGCTCCA	GCTCAGGCTCCA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8d0d915b-e84b-437a-88ad-c5b913bd54fe	940e219f-21f2-4ef6-bc8e-f0c382d0a6c2	1	149526104	149526115	GCTCAGGCTCCA	-	DEL	ZNF687	NM_020832	human	genbank	54_36p	+1	provisional	in_frame_del	c.713_724	p.SGSS239in_frame_del	0.000:0.000:0.001:0.003:0.001:0.007:0.012:0.011:0.006:0.003:0.001:0.002	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	(deletion:cds_exon[149525392,149527506])	no_errors
