Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
ABCB7	22	broad.mit.edu	36	X	74211977	74211977	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	X	74211977	74211977	A	G	SNP	ABCB7	NM_004299	human	genbank	54_36p	-1	reviewed	missense	c.803	p.L268S	1	superfamily_ABC_TM_1,HMMPfam_ABC_membrane	superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
AHNAK	79026	broad.mit.edu	36	11	62045707	62045707	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	11	62045707	62045707	T	C	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.12758	p.K4253R	1	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC	-	no_errors
AP2A2	161	broad.mit.edu	36	11	984220	984220	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	11	984220	984220	C	G	SNP	AP2A2	NM_012305	human	genbank	54_36p	1	validated	missense	c.1931	p.P644R	0.91	NULL	superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,HMMPfam_Alpha_adaptin_C,superfamily_Subdomain of clathrin and coatomer appendage domain	-	no_errors
AP2B1	163	broad.mit.edu	36	17	30993078	30993078	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	17	30993078	30993078	G	A	SNP	AP2B1	NM_001030006	human	genbank	54_36p	1	reviewed	missense	c.1507	p.V503I	1	superfamily_ARM repeat,HMMPfam_Adaptin_N	superfamily_ARM repeat,HMMPfam_Adaptin_N,HMMSmart_SM00185,superfamily_Clathrin adaptor appendage domain,HMMSmart_SM00809,HMMPfam_Alpha_adaptinC2,superfamily_Subdomain of clathrin and coatomer appendage domain,HMMPfam_B2-adapt-app_C	-	no_errors
APC	324	broad.mit.edu	36	5	112204836	112204836	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	5	112204836	112204836	A	T	SNP	APC	NM_000038	human	genbank	54_36p	1	reviewed	missense	c.5646	p.R1882S	1	NULL	HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_EB1_binding,HMMPfam_APC_basic,HMMPfam_APC_15aa,superfamily_ARM repeat	-	no_errors
ARSJ	79642	broad.mit.edu	36	4	115043506	115043506	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	4	115043506	115043506	C	T	SNP	ARSJ	NM_024590	human	genbank	54_36p	-1	validated	silent	c.1173	p.Q391	0.99	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors
CFTR	1080	broad.mit.edu	36	7	116969347	116969347	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	7	116969347	116969347	C	G	SNP	CFTR	NM_000492	human	genbank	54_36p	1	reviewed	missense	c.1158	p.N386K	1	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
EHD3	30845	broad.mit.edu	36	2	31337004	31337004	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	2	31337004	31337004	C	A	SNP	EHD3	NM_014600	human	genbank	54_36p	1	provisional	missense	c.627	p.N209K	1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1	-	no_errors
EPHA1	2041	broad.mit.edu	36	7	142808686	142808686	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	7	142808686	142808686	G	A	SNP	EPHA1	NM_005232	human	genbank	54_36p	-1	reviewed	silent	c.285	p.V95	0.46	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_EGF_2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
ERO1L	30001	broad.mit.edu	36	14	52189733	52189733	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	14	52189733	52189733	G	A	SNP	ERO1L	NM_014584	human	genbank	54_36p	-1	provisional	nonsense	c.859	p.R287*	1	superfamily_ERO1,HMMPfam_ERO1	superfamily_ERO1,HMMPfam_ERO1	-	no_errors
GPR173	54328	broad.mit.edu	36	X	53122815	53122815	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	X	53122815	53122815	G	T	SNP	GPR173	NM_018969	human	genbank	54_36p	1	validated	missense	c.287	p.C96F	1	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
KCNK18	338567	broad.mit.edu	36	10	118950726	118950726	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	10	118950726	118950726	G	T	SNP	KCNK18	NM_181840	human	genbank	54_36p	1	provisional	missense	c.290	p.R97M	0	superfamily_SSF81324,HMMPfam_Ion_trans_2	superfamily_SSF81324,HMMPfam_Ion_trans_2	-	no_errors
KNTC1	9735	broad.mit.edu	36	12	121655545	121655548	+	Frame_Shift_Del	DEL	ATCA	-	ATCA	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	ATCA	ATCA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	12	121655545	121655548	ATCA	-	DEL	KNTC1	NM_014708	human	genbank	54_36p	1	reviewed	frame_shift_del	c.5344_5347	p.N1783fs	0.921:0.910:0.010:0.009	HMMPfam_Rod_C	HMMPfam_Rod_C,PatternScan_BZIP_BASIC	(deletion:cds_exon[121655377,121655587])	no_errors
LAMB1	3912	broad.mit.edu	36	7	107403508	107403508	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	7	107403508	107403508	A	G	SNP	LAMB1	NM_002291	human	genbank	54_36p	-1	reviewed	missense	c.1051	p.Y351H	0.35	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Prefoldin,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin	-	no_errors
LTV1	84946	broad.mit.edu	36	6	144208937	144208937	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	6	144208937	144208937	C	T	SNP	LTV1	NM_032860	human	genbank	54_36p	1	provisional	silent	c.192	p.D64	1	HMMPfam_LTV	HMMPfam_LTV	-	no_errors
MAPK12	6300	broad.mit.edu	36	22	49035898	49035898	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	22	49035898	49035898	C	T	SNP	MAPK12	NM_002969	human	genbank	54_36p	-1	reviewed	silent	c.879	p.V293	0.99	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_MAPK	-	no_errors
NRXN2	9379	broad.mit.edu	36	11	64209946	64209946	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	11	64209946	64209946	G	A	SNP	NRXN2	NM_015080	human	genbank	54_36p	-1	reviewed	silent	c.900	p.Y300	1	superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
NUP205	23165	broad.mit.edu	36	7	134938258	134938258	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	7	134938258	134938258	C	T	SNP	NUP205	NM_015135	human	genbank	54_36p	1	validated	missense	c.2678	p.A893V	1	NULL	NULL	-	no_errors
OR11G2	390439	broad.mit.edu	36	14	19735929	19735929	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	14	19735929	19735929	G	A	SNP	OR11G2	NM_001005503	human	genbank	54_36p	1	provisional	missense	c.595	p.V199I	0	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR2B11	127623	broad.mit.edu	36	1	245681128	245681128	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	1	245681128	245681128	A	T	SNP	OR2B11	NM_001004492	human	genbank	54_36p	-1	provisional	silent	c.780	p.I260	0.98	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PAPD7	11044	broad.mit.edu	36	5	6804185	6804185	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	5	6804185	6804185	G	A	SNP	POLS	NM_006999	human	genbank	54_36p	1	reviewed	missense	c.1144	p.V382I	0.97	NULL	HMMPfam_PAP_assoc,HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain	-	no_errors
PAX6	5080	broad.mit.edu	36	11	31772162	31772162	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	11	31772162	31772162	T	C	SNP	PAX6	NM_001604	human	genbank	54_36p	-1	reviewed	silent	c.801	p.R267	1	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	HMMPfam_PAX,HMMSmart_PAX,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
PCDHB11	56125	broad.mit.edu	36	5	140560913	140560913	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	5	140560913	140560913	G	A	SNP	PCDHB11	NM_018931	human	genbank	54_36p	1	reviewed	missense	c.1382	p.R461H	0	HMMPfam_Cadherin,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PKHD1	5314	broad.mit.edu	36	6	52049080	52049080	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	6	52049080	52049080	G	A	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	missense	c.401	p.A134V	0.84	NULL	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8	-	no_errors
RASGRF2	5924	broad.mit.edu	36	5	80399737	80399737	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	5	80399737	80399737	G	A	SNP	RASGRF2	NM_006909	human	genbank	54_36p	1	validated	missense	c.526	p.E176K	1	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-	no_errors
RFPL2	10739	broad.mit.edu	36	22	30916896	30916896	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	22	30916896	30916896	C	T	SNP	RFPL2	NM_006605	human	genbank	54_36p	-1	validated	missense	c.817	p.V273I	0	HMMPfam_SPRY,HMMSmart_SM00449	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
SETDB1	9869	broad.mit.edu	36	1	149190067	149190067	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	1	149190067	149190067	T	C	SNP	SETDB1	NM_012432	human	genbank	54_36p	1	reviewed	missense	c.2090	p.I697T	1	superfamily_SSF82199,HMMSmart_PreSET,HMMPfam_Pre-SET	HMMSmart_TUDOR,HMMPfam_MBD,superfamily_DNA-binding_integrase-type,HMMSmart_MBD,superfamily_SSF82199,HMMSmart_PreSET,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET	-	no_errors
SLC25A23	79085	broad.mit.edu	36	19	6407446	6407446	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	19	6407446	6407446	G	C	SNP	SLC25A23	NM_024103	human	genbank	54_36p	-1	validated	missense	c.468	p.F156L	1	superfamily_EF-hand	superfamily_Mitochondrial carrier,HMMSmart_SM00054,HMMPfam_Mito_carr,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
STOX2	56977	broad.mit.edu	36	4	185168075	185168075	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	4	185168075	185168075	C	T	SNP	STOX2	NM_020225	human	genbank	54_36p	1	provisional	missense	c.1090	p.R364W	0.88	NULL	HMMPfam_Stork_head	-	no_errors
TEP1	7011	broad.mit.edu	36	14	19939105	19939105	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	14	19939105	19939105	C	T	SNP	TEP1	NM_007110	human	genbank	54_36p	-1	reviewed	missense	c.1427	p.R476H	1	HMMPfam_TROVE	HMMSmart_SM00320,HMMPfam_NACHT,HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TMEM139	135932	broad.mit.edu	36	7	142693871	142693871	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	7	142693871	142693871	C	G	SNP	TMEM139	NM_153345	human	genbank	54_36p	1	provisional	missense	c.478	p.P160A	0	NULL	NULL	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	17	7518990	7518990	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195T	1	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRAF6	7189	broad.mit.edu	36	11	36468092	36468092	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	11	36468092	36468092	C	T	SNP	TRAF6	NM_004620	human	genbank	54_36p	-1	reviewed	missense	c.1441	p.A481T	0.52	superfamily_Traf_like,HMMSmart_MATH,HMMPfam_MATH	superfamily_SSF57850,HMMPfam_zf-C3HC4,HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_Traf_like,HMMPfam_zf-TRAF,HMMSmart_MATH,HMMPfam_MATH	-	no_errors
TRIOBP	11078	broad.mit.edu	36	22	36451808	36451808	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	22	36451808	36451808	C	T	SNP	TRIOBP	NM_001039141	human	genbank	54_36p	1	reviewed	missense	c.3299	p.S1100F	0.95	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
TTN	7273	broad.mit.edu	36	2	179225077	179225077	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	2	179225077	179225077	G	C	SNP	TTN	ENST00000356127	human	ensembl	54_36p	-1	known	missense	c.2371	p.P791A	1	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,HMMPfam_I-set,HMMPfam_ig,PatternScan_FGGY_KINASES_1	-	no_stop_codon
TUBA3C	7278	broad.mit.edu	36	13	18649364	18649364	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	13	18649364	18649364	C	T	SNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	silent	c.759	p.T253	0.96	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like	-	no_errors
WSCD2	9671	broad.mit.edu	36	12	107166130	107166130	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	12	107166130	107166130	C	T	SNP	WSCD2	NM_014653	human	genbank	54_36p	1	validated	silent	c.1578	p.L526	0.97	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_WSC,HMMSmart_SM00321,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZC3H4	23211	broad.mit.edu	36	19	52285109	52285109	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	19	52285109	52285109	G	C	SNP	ZC3H4	NM_015168	human	genbank	54_36p	-1	validated	missense	c.670	p.L224V	1	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	-	no_errors
ZNF407	55628	broad.mit.edu	36	18	70475759	70475759	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	68b5ce1f-627d-4035-9c77-625d84ec9328	1487179e-2125-46a3-9cf4-5a0a233ccbc0	18	70475759	70475759	G	A	SNP	ZNF407	NM_017757	human	genbank	54_36p	1	provisional	missense	c.3796	p.V1266I	0	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00451,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
