Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-CYB	4519	genome.wustl.edu	36	MT	14752	14752	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	MT	14752	14752	C	T	SNP	MT-CYB	ENST00000361789	human	ensembl	54_36p	+1	known	missense	c.5	p.T2I	NULL	superfamily_Transmembr_di-haem_cytochrome	superfamily_Transmembr_di-haem_cytochrome,HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C	-	no_stop_codon:bad_bp_length_for_coding_region
RRM1	6240	genome.wustl.edu	36	11	4101075	4101075	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	11	4101075	4101075	C	T	SNP	RRM1	NM_001033	human	genbank	54_36p	+1	reviewed	missense	c.1205	p.T402I	1.000	HMMPfam_Ribonuc_red_lgC,superfamily_SSF51998	HMMPfam_ATP-cone,superfamily_Ribonucleo_red_N,HMMPfam_Ribonuc_red_lgN,HMMPfam_Ribonuc_red_lgC,superfamily_SSF51998,PatternScan_RIBORED_LARGE	-	no_errors
SMTNL2	342527	genome.wustl.edu	36	17	4457521	4457521	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	17	4457521	4457521	G	A	SNP	SMTNL2	NM_198501	human	genbank	54_36p	+1	validated	missense	c.944	p.R315H	1.000	superfamily_Calponin-homology	HMMPfam_CH,superfamily_Calponin-homology,HMMSmart_CH	-	no_errors
SLC23A2	9962	genome.wustl.edu	36	20	4802621	4802621	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	20	4802621	4802621	C	T	SNP	SLC23A2	NM_005116	human	genbank	54_36p	-1	reviewed	missense	c.1063	p.V355M	0.988	HMMPfam_Xan_ur_permease	HMMPfam_Xan_ur_permease,PatternScan_XANTH_URACIL_PERMASE	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519138	7519138	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	17	7519138	7519138	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.517	p.V173M	0.999	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
USP7	7874	genome.wustl.edu	36	16	8895946	8895946	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	16	8895946	8895946	T	C	SNP	USP7	NM_003470	human	genbank	54_36p	-1	validated	missense	c.3164	p.E1055G	1.000	NULL	superfamily_Traf_like,HMMSmart_MATH,HMMPfam_MATH,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
USP7	7874	genome.wustl.edu	36	16	8896440	8896440	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	16	8896440	8896440	G	A	SNP	USP7	NM_003470	human	genbank	54_36p	-1	validated	silent	c.2988	p.H996	1.000	NULL	HMMPfam_UCH,HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
LDB2	9079	genome.wustl.edu	36	4	16122752	16122752	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	4	16122752	16122752	C	T	SNP	LDB2	NM_001290	human	genbank	54_36p	-1	validated	missense	c.689	p.C230Y	1.000	HMMPfam_LIM_bind	HMMPfam_LIM_bind	-	no_errors
ENSG00000197511	0	genome.wustl.edu	36	1	16735088	16735088	+	Silent	SNP	T	C	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	1	16735088	16735088	T	C	SNP	ENSG00000197511	ENST00000357301	human	ensembl	54_36p	+1	known	silent	c.222	p.R74	0.004	NULL	NULL	-	no_errors
MFAP2	4237	genome.wustl.edu	36	1	17176207	17176207	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	1	17176207	17176207	G	C	SNP	MFAP2	NM_002403	human	genbank	54_36p	-1	reviewed	missense	c.111	p.H37Q	1.000	HMMPfam_MAGP	HMMPfam_MAGP,HMMPfam_ShK	-	no_errors
NHLRC1	378884	genome.wustl.edu	36	6	18230505	18230505	+	Silent	SNP	A	A	G	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	6	18230505	18230505	A	G	SNP	NHLRC1	NM_198586	human	genbank	54_36p	-1	provisional	silent	c.312	p.H104	0.000	superfamily_SSF57850	superfamily_SSF57850,HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_SSF101898,HMMPfam_NHL	-	no_errors
NAT2	10	genome.wustl.edu	36	8	18302099	18302099	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	8	18302099	18302099	C	T	SNP	NAT2	NM_000015	human	genbank	54_36p	+1	reviewed	silent	c.306	p.S102	0.000	superfamily_SSF54001,HMMPfam_Acetyltransf_2	superfamily_SSF54001,HMMPfam_Acetyltransf_2	-	no_errors
ECE1	1889	genome.wustl.edu	36	1	21424410	21424410	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	1	21424410	21424410	C	T	SNP	ECE1	NM_001397	human	genbank	54_36p	-1	validated	missense	c.1960	p.V654M	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13"	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,PatternScan_ZINC_PROTEASE"	-	no_errors
LOC646609	0	genome.wustl.edu	36	9	22737941	22737941	+	RNA	SNP	C	C	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	9	22737941	22737941	C	A	SNP	LOC646609	XR_037907	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ENTPD6	955	genome.wustl.edu	36	20	25151487	25151487	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	20	25151487	25151487	C	T	SNP	ENTPD6	NM_001247	human	genbank	54_36p	+1	reviewed	silent	c.1059	p.H353	0.055	HMMPfam_GDA1_CD39	HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE	-	no_errors
NF1	4763	genome.wustl.edu	36	17	26600260	26600260	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	17	26600260	26600260	C	A	SNP	NF1	NM_001042492	human	genbank	54_36p	+1	reviewed	nonsense	c.4107	p.Y1369*	1.000	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	-	no_errors
MASTL	84930	genome.wustl.edu	36	10	27499903	27499903	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	10	27499903	27499903	C	G	SNP	MASTL	NM_032844	human	genbank	54_36p	+1	validated	missense	c.2009	p.P670R	1.000	superfamily_Kinase_like	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X	-	no_errors
NF2	4771	genome.wustl.edu	36	22	28391031	28391031	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	22	28391031	28391031	C	G	SNP	NF2	NM_000268	human	genbank	54_36p	+1	reviewed	nonsense	c.863	p.S288*	1.000	superfamily_PH domain-like,HMMPfam_FERM_C	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_ERM,superfamily_Moesin tail domain	-	no_errors
LIG3	3980	genome.wustl.edu	36	17	30337178	30337178	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	17	30337178	30337178	G	A	SNP	LIG3	NM_013975	human	genbank	54_36p	+1	reviewed	silent	c.606	p.L202	1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain)	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_zf-PARP,PatternScan_PARP_ZN_FINGER_1,HMMPfam_DNA_ligase_A_N,superfamily_DNA ligase/mRNA capping enzyme catalytic domain,HMMPfam_DNA_ligase_A_M,PatternScan_DNA_LIGASE_A1,PatternScan_DNA_LIGASE_A2,HMMPfam_DNA_ligase_A_C,superfamily_BRCT domain,HMMSmart_SM00292	-	no_errors
AQP1	358	genome.wustl.edu	36	7	30929731	30929731	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	7	30929731	30929731	G	A	SNP	AQP1	NM_198098	human	genbank	54_36p	+1	reviewed	missense	c.772	p.D258N	0.265	NULL	superfamily_Aquaporin-like,HMMPfam_MIP,PatternScan_MIP	-	no_errors
ITGAM	3684	genome.wustl.edu	36	16	31216590	31216590	+	Silent	SNP	T	T	G	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	16	31216590	31216590	T	G	SNP	ITGAM	NM_000632	human	genbank	54_36p	+1	reviewed	silent	c.1521	p.A507	0.001	superfamily_SSF69318,HMMSmart_Int_alpha	superfamily_SSF69318,HMMSmart_Int_alpha,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
CSMD2	114784	genome.wustl.edu	36	1	34010891	34010891	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	1	34010891	34010891	C	A	SNP	CSMD2	NM_052896	human	genbank	54_36p	-1	validated	missense	c.1592	p.R531L	1.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC	-	no_errors
CA9	768	genome.wustl.edu	36	9	35664344	35664344	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	9	35664344	35664344	C	A	SNP	CA9	NM_001216	human	genbank	54_36p	+1	reviewed	missense	c.388	p.H130N	0.561	NULL	superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1	-	no_errors
NUP155	9631	genome.wustl.edu	36	5	37346528	37346528	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	5	37346528	37346528	T	G	SNP	NUP155	NM_153485	human	genbank	54_36p	-1	reviewed	missense	c.2511	p.L837F	0.973	HMMPfam_Nucleoporin	HMMPfam_Nucleoporin	-	no_errors
SETBP1	26040	genome.wustl.edu	36	18	40786485	40786485	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	18	40786485	40786485	T	C	SNP	SETBP1	NM_015559	human	genbank	54_36p	+1	validated	missense	c.3020	p.M1007T	1.000	NULL	HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
ZNF335	63925	genome.wustl.edu	36	20	44022406	44022406	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	20	44022406	44022406	C	T	SNP	ZNF335	NM_022095	human	genbank	54_36p	-1	reviewed	missense	c.1868	p.C623Y	1.000	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
FCGBP	8857	genome.wustl.edu	36	19	45100524	45100524	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	19	45100524	45100524	C	A	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	missense	c.4155	p.Q1385H	0.562	HMMSmart_VWD,HMMPfam_VWD	HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC	-	no_errors
NASP	4678	genome.wustl.edu	36	1	45853624	45853624	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	1	45853624	45853624	T	C	SNP	NASP	NM_172164	human	genbank	54_36p	+1	reviewed	missense	c.1922	p.I641T	1.000	superfamily_SSF48452	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452,HMMPfam_SHNi-TPR	-	no_errors
LOC728643	728643	genome.wustl.edu	36	10	46553753	46553753	+	RNA	SNP	T	T	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	10	46553753	46553753	T	C	SNP	LOC728643	NR_003277	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
MSH6	2956	genome.wustl.edu	36	2	47880972	47880972	+	Silent	SNP	C	C	G	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	2	47880972	47880972	C	G	SNP	MSH6	NM_000179	human	genbank	54_36p	+1	reviewed	silent	c.2346	p.L782	0.999	HMMPfam_MutS_III,superfamily_DNA repair protein MutS domain III,HMMSmart_SM00533	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_DNA repair protein MutS domain I,HMMPfam_MutS_I,HMMPfam_MutS_II,HMMPfam_MutS_III,superfamily_DNA repair protein MutS domain III,HMMSmart_SM00533,HMMPfam_MutS_IV,HMMPfam_MutS_V,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00534,PatternScan_DNA_MISMATCH_REPAIR_2	-	no_errors
GDF2	2658	genome.wustl.edu	36	10	48034230	48034230	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	10	48034230	48034230	A	T	SNP	GDF2	NM_016204	human	genbank	54_36p	-1	reviewed	missense	c.644	p.V215D	0.855	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1	-	no_errors
CCDC120	90060	genome.wustl.edu	36	X	48808400	48808400	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	X	48808400	48808400	G	T	SNP	CCDC120	NM_033626	human	genbank	54_36p	+1	provisional	missense	c.248	p.R83L	1.000	NULL	NULL	-	no_errors
C10orf71	118461	genome.wustl.edu	36	10	50203209	50203209	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	10	50203209	50203209	C	T	SNP	C10orf71	ENST00000374144	human	ensembl	54_36p	+1	known	silent	c.2613	p.I871	0.717	NULL	PatternScan_SUGAR_TRANSPORT_1	-	no_errors
KRT6B	3854	genome.wustl.edu	36	12	51131718	51131718	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	12	51131718	51131718	C	A	SNP	KRT6B	NM_005555	human	genbank	54_36p	-1	reviewed	missense	c.412	p.V138F	1.000	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
OR8K1	390157	genome.wustl.edu	36	11	55870822	55870822	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	11	55870822	55870822	C	G	SNP	OR8K1	NM_001002907	human	genbank	54_36p	+1	provisional	missense	c.732	p.F244L	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
MS4A12	54860	genome.wustl.edu	36	11	60026080	60026080	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	11	60026080	60026080	C	T	SNP	MS4A12	NM_017716	human	genbank	54_36p	+1	reviewed	missense	c.463	p.R155C	0.000	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
NCR1	9437	genome.wustl.edu	36	19	60109946	60109946	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	19	60109946	60109946	G	C	SNP	NCR1	NM_004829	human	genbank	54_36p	+1	validated	missense	c.324	p.E108D	0.013	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors
FAM96A	84191	genome.wustl.edu	36	15	62152221	62152221	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	15	62152221	62152221	G	C	SNP	FAM96A	NM_032231	human	genbank	54_36p	-1	validated	missense	c.445	p.R149G	1.000	NULL	HMMPfam_DUF59	-	no_errors
CPT1A	1374	genome.wustl.edu	36	11	68323375	68323375	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	11	68323375	68323375	T	A	SNP	CPT1A	NM_001876	human	genbank	54_36p	-1	reviewed	missense	c.580	p.M194L	0.964	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2	-	no_errors
CLEC18C	283971	genome.wustl.edu	36	16	68765796	68765796	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	16	68765796	68765796	G	A	SNP	CLEC18C	NM_173619	human	genbank	54_36p	+1	validated	silent	c.114	p.P38	0.000	superfamily_PR-1-like	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
AAK1	22848	genome.wustl.edu	36	2	69595266	69595266	+	Silent	SNP	T	T	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	2	69595266	69595266	T	C	SNP	AAK1	NM_014911	human	genbank	54_36p	-1	reviewed	silent	c.1617	p.Q539	0.998	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	-	no_errors
IQGAP2	10788	genome.wustl.edu	36	5	75924500	75924500	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	5	75924500	75924500	G	T	SNP	IQGAP2	NM_006633	human	genbank	54_36p	+1	validated	missense	c.901	p.V301F	0.968	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,PatternScan_WW_DOMAIN_1,HMMSmart_SM00015,HMMPfam_IQ,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_GTPase activation domain GAP,HMMSmart_SM00323,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMPfam_RasGAP_C	-	no_errors
ACADM	34	genome.wustl.edu	36	1	75987748	75987748	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	1	75987748	75987748	G	A	SNP	ACADM	NM_000016	human	genbank	54_36p	+1	reviewed	silent	c.765	p.V255	1.000	superfamily_Acyl-CoA dehydrogenase NM domain-like	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,PatternScan_ACYL_COA_DH_2	-	no_errors
PDE8B	8622	genome.wustl.edu	36	5	76660615	76660615	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	5	76660615	76660615	G	C	SNP	PDE8B	NM_003719	human	genbank	54_36p	+1	validated	silent	c.627	p.V209	1.000	HMMPfam_Response_reg	HMMPfam_PDE8,HMMPfam_Response_reg,HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
ART3	419	genome.wustl.edu	36	4	77222515	77222515	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	4	77222515	77222515	A	G	SNP	ART3	NM_001179	human	genbank	54_36p	+1	validated	missense	c.584	p.N195S	0.000	superfamily_SSF56399,HMMPfam_ART	superfamily_SSF56399,HMMPfam_ART,PatternScan_ART	-	no_errors
EDIL3	10085	genome.wustl.edu	36	5	83396377	83396377	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	5	83396377	83396377	A	T	SNP	EDIL3	NM_005711	human	genbank	54_36p	-1	reviewed	missense	c.850	p.S284T	1.000	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C	superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2	-	no_errors
FANCA	2175	genome.wustl.edu	36	16	88340766	88340766	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	16	88340766	88340766	G	T	SNP	FANCA	NM_000135	human	genbank	54_36p	-1	reviewed	missense	c.3382	p.Q1128K	0.901	NULL	HMMPfam_Fanconi_A	-	no_errors
EPHA3	2042	genome.wustl.edu	36	3	89472852	89472852	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	3	89472852	89472852	G	C	SNP	EPHA3	NM_005233	human	genbank	54_36p	+1	reviewed	missense	c.911	p.C304S	1.000	NULL	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SAM/Pointed domain	-	no_errors
STEAP1	26872	genome.wustl.edu	36	7	89629166	89629166	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	7	89629166	89629166	C	T	SNP	STEAP1	NM_012449	human	genbank	54_36p	+1	reviewed	silent	c.600	p.V200	0.987	HMMPfam_Ferric_reduct	HMMPfam_Ferric_reduct	-	no_errors
CALCR	799	genome.wustl.edu	36	7	92901499	92901499	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	7	92901499	92901499	A	C	SNP	CALCR	NM_001742	human	genbank	54_36p	-1	validated	splice_site	c.1191+2	e11+2	1.000	-	-	-	no_errors
RUNX1T1	862	genome.wustl.edu	36	8	93096055	93096055	+	Silent	SNP	G	G	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	8	93096055	93096055	G	T	SNP	RUNX1T1	NM_175634	human	genbank	54_36p	-1	reviewed	silent	c.396	p.T132	0.998	HMMPfam_TAFH,HMMSmart_SM00549	HMMPfam_TAFH,HMMSmart_SM00549,HMMPfam_NHR2,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors
ASTL	431705	genome.wustl.edu	36	2	96153700	96153700	+	Silent	SNP	C	T	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	2	96153700	96153700	C	T	SNP	ASTL	NM_001002036	human	genbank	54_36p	-1	validated	silent	c.912	p.P304	0.286	NULL	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00235,HMMPfam_Astacin"	-	no_errors
PIK3AP1	118788	genome.wustl.edu	36	10	98373232	98373232	+	Silent	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	10	98373232	98373232	C	T	SNP	PIK3AP1	NM_152309	human	genbank	54_36p	-1	validated	silent	c.1722	p.E574	0.586	NULL	superfamily_Ankyrin repeat	-	no_errors
RRP12	23223	genome.wustl.edu	36	10	99135724	99135724	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	10	99135724	99135724	G	C	SNP	RRP12	NM_015179	human	genbank	54_36p	-1	validated	missense	c.1034	p.A345G	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_NUC173	-	no_errors
OR5H1	26341	genome.wustl.edu	36	3	99334907	99334907	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	3	99334907	99334907	T	A	SNP	OR5H1	NM_001005338	human	genbank	54_36p	+1	provisional	missense	c.676	p.L226I	0.007	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DNMBP	23268	genome.wustl.edu	36	10	101705838	101705838	+	Silent	SNP	G	G	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	10	101705838	101705838	G	A	SNP	DNMBP	NM_015221	human	genbank	54_36p	-1	validated	silent	c.1383	p.P461	0.770	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,HMMSmart_SM00721,HMMPfam_BAR	-	no_errors
GRIA4	2893	genome.wustl.edu	36	11	105294683	105294683	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	11	105294683	105294683	A	T	SNP	GRIA4	NM_000829	human	genbank	54_36p	+1	reviewed	missense	c.1305	p.E435D	0.993	HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd	superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
TM7SF4	81501	genome.wustl.edu	36	8	105430488	105430488	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	8	105430488	105430488	C	T	SNP	TM7SF4	NM_030788	human	genbank	54_36p	+1	reviewed	missense	c.532	p.P178S	0.392	NULL	HMMPfam_DC_STAMP	-	no_errors
LOC341230	341230	genome.wustl.edu	36	11	106552861	106552861	+	RNA	SNP	G	G	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	11	106552861	106552861	G	A	SNP	LOC341230	XR_016383	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.968	-	-	-	pseudogene
LOC729164	729164	genome.wustl.edu	36	2	109327036	109327036	+	RNA	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	2	109327036	109327036	C	T	SNP	LOC729164	XR_041020	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	113632238	113632238	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	8	113632238	113632238	T	C	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.4402	p.I1468V	1.000	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors
FOXP2	93986	genome.wustl.edu	36	7	114085531	114085531	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	7	114085531	114085531	G	T	SNP	FOXP2	NM_148898	human	genbank	54_36p	+1	reviewed	missense	c.1516	p.D506Y	1.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2	-	no_errors
ZNF80	7634	genome.wustl.edu	36	3	115438123	115438123	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	3	115438123	115438123	G	T	SNP	ZNF80	NM_007136	human	genbank	54_36p	-1	validated	nonsense	c.489	p.C163*	0.057	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
AMBP	259	genome.wustl.edu	36	9	115878788	115878788	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	9	115878788	115878788	C	A	SNP	AMBP	NM_001633	human	genbank	54_36p	-1	reviewed	missense	c.171	p.K57N	0.331	superfamily_Calycin,HMMPfam_Lipocalin	superfamily_Calycin,PatternScan_LIPOCALIN,HMMPfam_Lipocalin,superfamily_Prot_inh_Kunz-m,HMMSmart_KU,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors
CEP164	22897	genome.wustl.edu	36	11	116756538	116756538	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	11	116756538	116756538	A	G	SNP	CEP164	NM_014956	human	genbank	54_36p	+1	validated	splice_site	c.1318-2	e10-2	0.933	-	-	-	no_errors
GRK5	2869	genome.wustl.edu	36	10	121191565	121191565	+	Silent	SNP	C	C	G	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	10	121191565	121191565	C	G	SNP	GRK5	NM_005308	human	genbank	54_36p	+1	reviewed	silent	c.1032	p.G344	0.999	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ST,superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,HMMSmart_S_TK_X	-	no_errors
CCDC62	84660	genome.wustl.edu	36	12	121848701	121848701	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	12	121848701	121848701	G	A	SNP	CCDC62	NM_201435	human	genbank	54_36p	+1	validated	splice_site	c.977+1	e8+1	1.000	-	-	-	no_errors
SETD8	387893	genome.wustl.edu	36	12	122445685	122445685	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	12	122445685	122445685	C	T	SNP	SETD8	NM_020382	human	genbank	54_36p	+1	validated	missense	c.428	p.S143L	0.249	NULL	superfamily_SSF82199,HMMPfam_SET,HMMSmart_SET	-	no_errors
PLEKHA1	59338	genome.wustl.edu	36	10	124156178	124156178	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	10	124156178	124156178	C	G	SNP	PLEKHA1	NM_001001974	human	genbank	54_36p	+1	validated	missense	c.341	p.T114R	1.000	superfamily_SSF50729,HMMSmart_PH	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
GPR119	139760	genome.wustl.edu	36	X	129346505	129346505	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	X	129346505	129346505	G	A	SNP	GPR119	NM_178471	human	genbank	54_36p	-1	provisional	nonsense	c.598	p.R200*	0.961	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PGAM5	192111	genome.wustl.edu	36	12	131804444	131804444	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	12	131804444	131804444	A	G	SNP	PGAM5	NM_138575	human	genbank	54_36p	+1	provisional	missense	c.572	p.K191R	1.000	superfamily_Phosphoglycerate mutase-like,HMMPfam_PGAM	superfamily_Phosphoglycerate mutase-like,HMMPfam_PGAM	-	no_errors
PCDHB9	56127	genome.wustl.edu	36	5	140548111	140548111	+	Silent	SNP	T	T	G	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	5	140548111	140548111	T	G	SNP	PCDHB9	NM_019119	human	genbank	54_36p	+1	reviewed	silent	c.1035	p.P345	0.889	superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1	HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_SM00112	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PCDHB13	56123	genome.wustl.edu	36	5	140574541	140574541	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	5	140574541	140574541	C	T	SNP	PCDHB13	NM_018933	human	genbank	54_36p	+1	reviewed	missense	c.662	p.P221L	0.258	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
LARS	51520	genome.wustl.edu	36	5	145504043	145504043	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	5	145504043	145504043	C	G	SNP	LARS	NM_020117	human	genbank	54_36p	-1	reviewed	missense	c.1718	p.C573S	1.000	superfamily_Nucleotidylyl transferase	superfamily_Nucleotidylyl transferase,PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS/IleRS/LeuRS editing domain,HMMPfam_tRNA-synt_1g,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1	-	no_errors
ADAM15	8751	genome.wustl.edu	36	1	153297143	153297143	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	1	153297143	153297143	C	T	SNP	ADAM15	NM_207197	human	genbank	54_36p	+1	reviewed	missense	c.1609	p.P537S	0.160	HMMSmart_SM00608,HMMPfam_ADAM_CR	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_2"	-	no_errors
GRIA2	2891	genome.wustl.edu	36	4	158444187	158444187	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	4	158444187	158444187	T	A	SNP	GRIA2	NM_000826	human	genbank	54_36p	+1	reviewed	missense	c.263	p.I88N	1.000	superfamily_SSF53822,HMMPfam_ANF_receptor	superfamily_SSF53822,HMMPfam_ANF_receptor,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
SLAMF7	57823	genome.wustl.edu	36	1	158984930	158984930	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	1	158984930	158984930	T	A	SNP	SLAMF7	NM_021181	human	genbank	54_36p	+1	provisional	splice_site	c.376+2	e2+2	0.947	-	-	-	no_errors
ZNF648	127665	genome.wustl.edu	36	1	180293585	180293585	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	1	180293585	180293585	T	C	SNP	ZNF648	NM_001009992	human	genbank	54_36p	-1	provisional	missense	c.184	p.T62A	0.000	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184401961	184401961	+	Silent	SNP	G	G	C	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	1	184401961	184401961	G	C	SNP	HMCN1	NM_031935	human	genbank	54_36p	+1	reviewed	silent	c.15342	p.G5114	0.984	PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF	superfamily_vWA-like,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,HMMPfam_I-set,HMMSmart_SM00406,PatternScan_CECROPIN,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMPfam_EGF_CA,PatternScan_EGF_2	-	no_errors
GTF3C3	9330	genome.wustl.edu	36	2	197344768	197344768	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	2	197344768	197344768	C	A	SNP	GTF3C3	NM_012086	human	genbank	54_36p	-1	provisional	missense	c.2209	p.V737F	1.000	superfamily_TPR-like	HMMSmart_SM00028,superfamily_Protein prenylyltransferase,HMMPfam_TPR_2,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors
ERBB4	2066	genome.wustl.edu	36	2	212286594	212286594	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-61-2613-01A-01W-1092-09	TCGA-61-2613-11A-01W-1092-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	f23c9abe-ad14-42bf-81aa-dab330395c71	b91b08e2-dacf-4c54-858f-6b19b3b5587b	2	212286594	212286594	G	A	SNP	ERBB4	NM_005235	human	genbank	54_36p	-1	reviewed	missense	c.908	p.S303F	1.000	HMMPfam_Furin-like,superfamily_Growth factor receptor domain	superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMSmart_SM00261,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_YLP	-	no_errors
