Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ITPK1	3705	broad.mit.edu	37	14	93412799	93412799	+	Nonsense_Mutation	SNP	C	C	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr14:93412799C>A	ENST00000267615.6	-	10	951	c.778G>T	c.(778-780)Gag>Tag	p.E260*	ITPK1_ENST00000555495.1_Nonsense_Mutation_p.E141*|ITPK1_ENST00000354313.3_Nonsense_Mutation_p.E260*|ITPK1_ENST00000556603.2_Nonsense_Mutation_p.E260*|ITPK1_ENST00000556954.1_5'UTR			Q13572	ITPK1_HUMAN	inositol-tetrakisphosphate 1-kinase	260	ATP-grasp.				blood coagulation|inositol trisphosphate metabolic process|signal transduction	cytosol	ATP binding|hydrolase activity|inositol tetrakisphosphate 1-kinase activity|inositol-1,3,4-trisphosphate 5/6-kinase activity|isomerase activity|ligase activity|magnesium ion binding			endometrium(1)|large_intestine(3)|lung(6)|ovary(1)	11		all_cancers(154;0.077)|all_epithelial(191;0.247)		Epithelial(152;0.124)|all cancers(159;0.169)		CGGATGACCTCGTCGCTCGGC	0.632000													111	123					2.90702e-44	3.05421e-44	1	1	0
UNC93B1	81622	broad.mit.edu	37	11	67759316	67759316	+	Missense_Mutation	SNP	C	C	T	rs4014596		TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr11:67759316C>T	ENST00000227471.2	-	12	1571	c.1492G>A	c.(1492-1494)Gtg>Atg	p.V498M	UNC93B1_ENST00000530331.1_5'UTR	NM_030930.2	NP_112192.2	Q9H1C4	UN93B_HUMAN	unc-93 homolog B1 (C. elegans)	499					innate immune response|intracellular protein transport|response to virus|toll-like receptor 3 signaling pathway|toll-like receptor 7 signaling pathway|toll-like receptor 9 signaling pathway	early phagosome|endoplasmic reticulum membrane|endosome|integral to membrane|lysosome		p.V498M(1)									ACCAGCAGCACCGCCAGCTTA	0.741000													3	42					0	0	1	0	0
DGKK	139189	broad.mit.edu	37	X	50213492	50213492	+	RNA	SNP	A	A	G			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chrX:50213492A>G	ENST00000376025.2	-	0	245							Q5KSL6	DGKK_HUMAN	diacylglycerol kinase, kappa						activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			central_nervous_system(1)|endometrium(12)|kidney(4)|large_intestine(5)|lung(18)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	45	Ovarian(276;0.236)					AGGGACCTGGAGCAAGCTCTG	0.677000													247	250					0	0	1	0	0
UMOD	7369	broad.mit.edu	37	16	20362076	20362076	+	Missense_Mutation	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr16:20362076G>A	ENST00000396138.4	-	2	197	c.131C>T	c.(130-132)gCg>gTg	p.A44V	UMOD_ENST00000570689.1_5'UTR|UMOD_ENST00000424589.1_5'UTR|UMOD_ENST00000396134.2_5'UTR|UMOD_ENST00000396142.2_5'UTR|UMOD_ENST00000302509.4_5'UTR			P07911	UROM_HUMAN	uromodulin	0	EGF-like 1.				cellular defense response|negative regulation of cell proliferation	anchored to membrane|apical plasma membrane|basolateral plasma membrane|cilium membrane|extrinsic to membrane|primary cilium|spindle pole	calcium ion binding			endometrium(5)|kidney(1)|large_intestine(7)|lung(20)|ovary(1)|skin(3)|upper_aerodigestive_tract(3)|urinary_tract(1)	41						TGCTCTTCCCGCTACTTCAGG	0.517000													4	163					0	0	1	0	0
TMC4	147798	broad.mit.edu	37	19	54664079	54664079	+	Silent	SNP	G	G	A	rs77135688	byFrequency	TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr19:54664079G>A	ENST00000376591.4	-	15	2234	c.2103C>T	c.(2101-2103)cgC>cgT	p.R701R	TMC4_ENST00000301187.4_Silent_p.R695R|TMC4_ENST00000416963.1_Silent_p.R283R	NM_001145303.1|NM_144686.2	NP_001138775.1|NP_653287.1	Q7Z404	TMC4_HUMAN	transmembrane channel-like 4	701						integral to membrane				breast(2)|endometrium(7)|large_intestine(4)|lung(6)|pancreas(1)|skin(1)|urinary_tract(1)	22	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					GCGCCACAGCGCGCCGTGCCA	0.612000													138	179					0	0	1	0	0
ANKRD20A8P	0	broad.mit.edu	37	2	95484663	95484663	+	RNA	SNP	T	T	C	rs7421280		TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr2:95484663T>C	ENST00000432432.2	-	0	1271					NR_040113.1																						TTATTTCCTTTTTTGACCTTT	0.259000													6	406					0	0	1	0	0
NRP1	8829	broad.mit.edu	37	10	33515104	33515104	+	Silent	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr10:33515104G>A	ENST00000265371.4	-	8	1620	c.1095C>T	c.(1093-1095)aaC>aaT	p.N365N	NRP1_ENST00000374816.3_Silent_p.N365N|NRP1_ENST00000374821.5_Silent_p.N365N|NRP1_ENST00000374822.4_Silent_p.N365N|NRP1_ENST00000374823.5_Silent_p.N365N|NRP1_ENST00000374867.2_Silent_p.N365N|NRP1_ENST00000395995.1_Silent_p.N365N			O14786	NRP1_HUMAN	neuropilin 1	365	F5/8 type C 1.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			NS(2)|breast(6)|central_nervous_system(4)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(1)|lung(16)|ovary(1)|pancreas(1)|prostate(1)|skin(3)|stomach(2)	48					Palifermin(DB00039)|Pegaptanib(DB04895)	AGTCTTCCCCGTTGGAGCTAA	0.433000													238	277					0	0	1	0	0
FRMPD3	84443	broad.mit.edu	37	X	106845604	106845604	+	Silent	SNP	A	A	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chrX:106845604A>T	ENST00000276185.4	+	16	4434	c.4434A>T	c.(4432-4434)tcA>tcT	p.S1478S				Q5JV73	FRPD3_HUMAN	FERM and PDZ domain containing 3	1478						cytoskeleton				breast(3)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(16)|ovary(2)|urinary_tract(1)	28						CTCTGGAGTCACCGACGCTGG	0.632000													4	218					0	0	1	0	0
LSS	4047	broad.mit.edu	37	21	47629468	47629468	+	Splice_Site	SNP	C	C	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr21:47629468C>A	ENST00000397728.3	-	13	1344	c.1266_splice	c.e13+1	p.Q422_splice	LSS_ENST00000457828.2_Splice_Site_p.Q342_splice|LSS_ENST00000356396.4_Splice_Site_p.Q422_splice|LSS_ENST00000522411.1_Splice_Site_p.Q411_splice	NM_001145436.1|NM_002340.5	NP_001138908.1|NP_002331.3	P48449	ERG7_HUMAN	lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)	422					cholesterol biosynthetic process	endoplasmic reticulum membrane	lanosterol synthase activity			cervix(1)|endometrium(6)|kidney(1)|large_intestine(3)|liver(1)|lung(7)|skin(1)|urinary_tract(1)	21	Breast(49;0.214)					CCGGCCTCACCTGTGAGAGCC	0.652000													3	49					6.4e-05	6.55802e-05	1	1	0
TSSC2	0	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr11:3427845C>T	ENST00000529482.1	+	0	962																											CTTCAAGTGGCAGGAGCAGAA	0.587000													7	166					0	0	1	0	0
RP11-1166P10.6	0	broad.mit.edu	37	16	32070612	32070612	+	RNA	SNP	A	A	C			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr16:32070612A>C	ENST00000566806.1	-	0	499																											GGTCTCCTGCAAGGCTTCTGG	0.552000													8	327					0	0	1	0	0
EFCAB13	124989	broad.mit.edu	37	17	45517840	45517840	+	Silent	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr17:45517840C>T	ENST00000331493.2	+	25	3093	c.2682C>T	c.(2680-2682)tcC>tcT	p.S894S		NM_152347.4	NP_689560.3			EF-hand calcium binding domain 13																		CTAAATTATCCGATATATTGA	0.294000													18	501					0	0	1	0	0
BZW2	28969	broad.mit.edu	37	7	16722403	16722403	+	Splice_Site	SNP	A	A	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr7:16722403A>T	ENST00000433922.2	+	5	517		c.e5-1		BZW2_ENST00000452975.2_Splice_Site|BZW2_ENST00000258761.3_Splice_Site|BZW2_ENST00000405202.1_Splice_Site	NM_001159767.1	NP_001153239.1	Q9Y6E2	BZW2_HUMAN	basic leucine zipper and W2 domains 2						cell differentiation|nervous system development|RNA metabolic process		protein binding	p.?(1)		cervix(1)|endometrium(1)|kidney(4)|large_intestine(3)|lung(2)|ovary(2)|skin(1)|urinary_tract(1)	15	Lung NSC(10;0.0367)|all_lung(11;0.0837)			UCEC - Uterine corpus endometrioid carcinoma (126;0.199)		TTTTTTTTTTAGGTCTTCAAT	0.274000													5	243					0	0	1	0	0
SPRR3	6707	broad.mit.edu	37	1	152975691	152975691	+	Silent	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr1:152975691C>T	ENST00000331860.3	+	3	345	c.195C>T	c.(193-195)ggC>ggT	p.G65G	SPRR3_ENST00000295367.4_Silent_p.G65G|SPRR3_ENST00000542696.1_Silent_p.G65G	NM_005416.2	NP_005407.1	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	65	14 X 8 AA approximate tandem repeats.			Missing (in Ref. 2; no nucleotide entry, 4; CAB65098 and 9; AAH17802).	keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			endometrium(1)|kidney(1)|large_intestine(2)|lung(1)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	11	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTGAGCCAGGCTGTACCAAGG	0.557000													5	204					0	0	1	0	0
SLC6A16	28968	broad.mit.edu	37	19	49797186	49797186	+	Silent	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr19:49797186G>A	ENST00000454748.3	-	9	1717	c.1516C>T	c.(1516-1518)Ctg>Ttg	p.L506L	SLC6A16_ENST00000335875.4_Silent_p.L506L			Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	506						integral to membrane|intracellular	neurotransmitter:sodium symporter activity			NS(1)|kidney(2)|large_intestine(5)|lung(17)|ovary(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	32		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)		CCCATGGCCAGCAACATCAGG	0.498000													6	590					0	0	1	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39262122	39262122	+	Missense_Mutation	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr17:39262122G>A	ENST00000391415.1	+	1	539	c.482G>A	c.(481-483)cGc>cAc	p.R161H		NM_001146041.1	NP_001139513.1	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	161	29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].					keratin filament				central_nervous_system(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|lung(1)|urinary_tract(3)	14						agctgctgccgcccctcttgc	0.652000													15	56					0	0	1	0	0
CHRNB1	1140	broad.mit.edu	37	17	7348716	7348716	+	Silent	SNP	A	A	G			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr17:7348716A>G	ENST00000306071.2	+	2	253	c.186A>G	c.(184-186)caA>caG	p.Q62Q	FGF11_ENST00000575331.1_3'UTR	NM_000747.2	NP_000738.2	P11230	ACHB_HUMAN	cholinergic receptor, nicotinic, beta 1 (muscle)	62					behavioral response to nicotine|muscle contraction|muscle fiber development|neuromuscular synaptic transmission|postsynaptic membrane organization|regulation of membrane potential|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine binding|receptor activity			NS(1)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(6)|lung(7)|ovary(3)	23		Prostate(122;0.157)				TCCTGGCGCAACTCATCAGCC	0.682000													30	42					0	0	1	0	0
ZNF367	195828	broad.mit.edu	37	9	99180246	99180246	+	Silent	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr9:99180246G>A	ENST00000375256.4	-	1	365	c.69C>T	c.(67-69)tgC>tgT	p.C23C		NM_153695.3	NP_710162.1	Q7RTV3	ZN367_HUMAN	zinc finger protein 367	23	Pro-rich.				regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			cervix(1)|endometrium(4)|large_intestine(3)|lung(3)|prostate(1)	12		Acute lymphoblastic leukemia(62;0.0167)				GGGAGTCGTGGCAGAAGATGA	0.756000													5	48					0	0	1	0	0
GOLT1A	127845	broad.mit.edu	37	1	204170871	204170871	+	Silent	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr1:204170871C>T	ENST00000308302.3	-	3	371	c.186G>A	c.(184-186)cgG>cgA	p.R62R		NM_198447.1	NP_940849.1	Q6ZVE7	GOT1A_HUMAN	golgi transport 1A	62					protein transport|vesicle-mediated transport	Golgi membrane|integral to membrane		p.R62R(1)		kidney(1)|lung(2)|urinary_tract(1)	4	all_cancers(21;0.0165)|Breast(84;0.179)|all_epithelial(62;0.242)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.244)			TGAGTTTGTGCCGTTGGAAGA	0.567000													6	445					0	0	1	0	0
TUBGCP4	27229	broad.mit.edu	37	15	43696705	43696705	+	Missense_Mutation	SNP	T	T	G			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr15:43696705T>G	ENST00000564079.1	+	17	2183	c.1943T>G	c.(1942-1944)cTa>cGa	p.L648R	TUBGCP4_ENST00000260383.7_Missense_Mutation_p.L649R|TUBGCP4_ENST00000399460.3_3'UTR	NM_014444.2	NP_055259.2	Q9UGJ1	GCP4_HUMAN	tubulin, gamma complex associated protein 4	649					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	structural constituent of cytoskeleton			breast(1)|cervix(2)|endometrium(1)|kidney(1)|large_intestine(5)|lung(3)|ovary(4)|prostate(2)|upper_aerodigestive_tract(2)	21		all_cancers(109;1.27e-10)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.72e-06)|all_lung(180;1.59e-05)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;3.53e-07)		CTGTTACGACTAGATTATAAC	0.453000													29	272					0	0	1	0	0
TUBB8P7	0	broad.mit.edu	37	16	90162579	90162579	+	RNA	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr16:90162579C>T	ENST00000564451.1	+	0	1932				TUBB8P7_ENST00000567960.1_RNA																							AGGAGTATGCCGAGGAGGAGG	0.512000													7	612					0	0	1	0	0
PCDHA6	0	broad.mit.edu	37	5	140208566	140208566	+	Missense_Mutation	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr5:140208566G>A	ENST00000529310.1	+	1	1004	c.890G>A	c.(889-891)cGa>cAa	p.R297Q	PCDHA5_ENST00000529859.1_Intron|PCDHA5_ENST00000529619.1_Intron|PCDHA6_ENST00000527624.1_Missense_Mutation_p.R297Q|PCDHA2_ENST00000526136.1_Intron|PCDHA4_ENST00000512229.2_Intron|PCDHA1_ENST00000504120.2_Intron|PCDHA1_ENST00000394633.3_Intron|PCDHA3_ENST00000522353.2_Intron|PCDHA4_ENST00000530339.1_Intron	NM_018909.2|NM_031848.1|NM_031849.1	NP_061732.1|NP_114036.1|NP_114037.1														NS(1)|breast(2)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(11)|lung(42)|prostate(8)|skin(5)|upper_aerodigestive_tract(1)|urinary_tract(1)	89			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCATAGATCGAAATACGGGA	0.418000													289	327					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65253368	65253368	+	Silent	SNP	A	A	G			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr14:65253368A>G	ENST00000389722.3	-	15	3368	c.3315T>C	c.(3313-3315)ggT>ggC	p.G1105G	SPTB_ENST00000556626.1_Silent_p.G1105G|SPTB_ENST00000542895.1_Silent_p.G1105G|SPTB_ENST00000389720.3_Silent_p.G1105G|SPTB_ENST00000389721.5_Silent_p.G1105G	NM_001024858.2	NP_001020029.1	P11277	SPTB1_HUMAN	spectrin, beta, erythrocytic	1105					actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			breast(5)|central_nervous_system(4)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(18)|lung(36)|ovary(8)|pancreas(1)|prostate(4)|skin(10)|urinary_tract(3)	106		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CATCCTTGATACCTGCATGCT	0.577000													73	105					0	0	1	0	0
RP11-178C3.2	0	broad.mit.edu	37	17	58066651	58066651	+	RNA	SNP	C	C	T	rs144367363	by1000genomes	TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr17:58066651C>T	ENST00000586209.1	+	0	158																											ACTGGTAAAGCTGTTTAAGAG	0.333000													5	95					0	0	1	0	0
HSD17B7P2	0	broad.mit.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G	rs2257765		TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr10:38654432A>G	ENST00000494540.1	+	0	599					NR_003086.1																						TCATCTCGCAATGCAAGGAAA	0.453000													9	276					0	0	1	0	0
THBS3	7059	broad.mit.edu	37	1	155170284	155170284	+	Missense_Mutation	SNP	T	T	C			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr1:155170284T>C	ENST00000368378.3	-	14	1686	c.1666A>G	c.(1666-1668)Aat>Gat	p.N556D	RP11-263K19.4_ENST00000436772.1_RNA|RP11-263K19.4_ENST00000453136.1_RNA|THBS3_ENST00000487250.1_5'UTR|THBS3_ENST00000457183.2_Missense_Mutation_p.N436D|THBS3_ENST00000541990.1_Missense_Mutation_p.N85D|THBS3_ENST00000541576.1_5'UTR|RP11-263K19.4_ENST00000422665.1_RNA|THBS3_ENST00000428962.2_Intron	NM_001252607.1|NM_007112.4	NP_001239536.1|NP_009043.1	P49746	TSP3_HUMAN	thrombospondin 3	556					cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(6)|endometrium(4)|kidney(4)|large_intestine(6)|lung(14)|ovary(3)|prostate(2)|skin(2)|upper_aerodigestive_tract(4)|urinary_tract(3)	48	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CCTTCCCCATTGCCATCTGTG	0.547000													236	269					0	0	1	0	0
AC004381.6	0	broad.mit.edu	37	16	20856445	20856445	+	Missense_Mutation	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr16:20856445G>A	ENST00000261377.6	+	18	2215	c.2006G>A	c.(2005-2007)gGc>gAc	p.G669D	AC004381.6_ENST00000348433.6_Missense_Mutation_p.G638D|AC004381.6_ENST00000564274.1_Missense_Mutation_p.G669D|ERI2_ENST00000564349.1_Intron	NM_001199053.1|NM_030941.2	NP_001185982.1|NP_112203.2																					AAGCTGAAAGGCAGGCATGCC	0.537000													79	112					0	0	1	0	0
CROCCP2	0	broad.mit.edu	37	1	16946336	16946336	+	RNA	SNP	G	G	A	rs11586784	by1000genomes	TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr1:16946336G>A	ENST00000412962.1	-	0	1183																											CAGGGCTCACGAACCTGCTGC	0.662000													4	61					0	0	1	0	0
FZD7	8324	broad.mit.edu	37	2	202900538	202900538	+	Missense_Mutation	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr2:202900538G>A	ENST00000286201.1	+	1	1229	c.1168G>A	c.(1168-1170)Gcc>Acc	p.A390T		NM_003507.1	NP_003498.1	O75084	FZD7_HUMAN	frizzled family receptor 7	390					axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|mesenchymal to epithelial transition|negative regulation of cell-substrate adhesion|negative regulation of ectodermal cell fate specification|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of phosphorylation|positive regulation of transcription, DNA-dependent|regulation of catenin import into nucleus|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding	p.A390T(1)		breast(1)|endometrium(6)|large_intestine(6)|lung(11)|ovary(2)|skin(3)|upper_aerodigestive_tract(2)	31						GGCCGTGCCCGCCGTCAAGAC	0.667000											OREG0015146	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	294					0	0	1	0	0
GLI3	2737	broad.mit.edu	37	7	42005281	42005281	+	Silent	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr7:42005281G>A	ENST00000395925.3	-	15	3474	c.3390C>T	c.(3388-3390)gaC>gaT	p.D1130D	GLI3_ENST00000479210.1_5'UTR	NM_000168.5	NP_000159.3	P10071	GLI3_HUMAN	GLI family zinc finger 3	1130					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(2)|biliary_tract(1)|breast(4)|central_nervous_system(2)|endometrium(12)|kidney(7)|large_intestine(25)|lung(49)|ovary(3)|pancreas(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	112						GCCCGGGCGCGTCAAAGTCAC	0.642000									Pallister-Hall syndrome;Greig Cephalopolysyndactyly				160	295					0	0	1	0	0
SLC6A10P	0	broad.mit.edu	37	16	32890622	32890622	+	RNA	SNP	T	T	G			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr16:32890622T>G	ENST00000330048.5	-	0	3176					NR_003083.2																						CGTTGGTGTTTTTGTAGACCA	0.617000													5	104					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129813459	129813459	+	Splice_Site	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr6:129813459G>A	ENST00000421865.2	+	58	8124		c.e58-1		LAMA2_ENST00000498257.1_Splice_Site	NM_000426.3|NM_001079823.1	NP_000417.2|NP_001073291.1	P24043	LAMA2_HUMAN	laminin, alpha 2						cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			NS(2)|biliary_tract(2)|breast(10)|central_nervous_system(1)|endometrium(18)|haematopoietic_and_lymphoid_tissue(2)|kidney(7)|large_intestine(35)|lung(84)|ovary(10)|prostate(4)|skin(9)|stomach(1)|upper_aerodigestive_tract(7)|urinary_tract(2)	194				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CATTCTATTAGCCCCATGGAC	0.413000													12	665					0	0	1	0	0
NUP214	8021	broad.mit.edu	37	9	134072641	134072641	+	Missense_Mutation	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr9:134072641G>A	ENST00000359428.5	+	29	3904	c.3760G>A	c.(3760-3762)Gca>Aca	p.A1254T	NUP214_ENST00000465486.2_3'UTR|NUP214_ENST00000411637.2_Missense_Mutation_p.A1244T|NUP214_ENST00000451030.1_Missense_Mutation_p.A1255T|NUP214_ENST00000483497.2_Missense_Mutation_p.A80T			P35658	NU214_HUMAN	nucleoporin 214kDa	1254	11 X 5 AA approximate repeats.|Pro/Ser/Thr-rich.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			NS(1)|breast(9)|central_nervous_system(3)|endometrium(13)|kidney(2)|large_intestine(9)|liver(2)|lung(29)|ovary(2)|prostate(3)|skin(7)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(2)	86	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		CCAGCCGGACGCATTCTCATC	0.483000			T	"""DEK, SET, ABL1"""	"""AML, T-ALL"""								5	420					0	0	1	0	0
GGT1	2678	broad.mit.edu	37	22	25011062	25011062	+	Missense_Mutation	SNP	C	C	G	rs138472970	by1000genomes	TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr22:25011062C>G	ENST00000400382.1	+	7	1105	c.350C>G	c.(349-351)aCc>aGc	p.T117S	GGT1_ENST00000248923.4_Missense_Mutation_p.T117S|GGT1_ENST00000406383.2_Missense_Mutation_p.T117S|GGT1_ENST00000400380.1_Missense_Mutation_p.T117S|GGT1_ENST00000400383.1_Missense_Mutation_p.T117S			P19440	GGT1_HUMAN	gamma-glutamyltransferase 1	117					glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity|protein binding	p.T117S(8)		breast(1)|endometrium(2)|kidney(14)|large_intestine(2)|lung(6)|pancreas(1)|prostate(6)|skin(7)|upper_aerodigestive_tract(1)	40					Glutathione(DB00143)	GCCTTTGCCACCATGTTCAAC	0.637000													5	135					0	0	1	0	0
SPTBN1	0	broad.mit.edu	37	2	54887113	54887113	+	Missense_Mutation	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr2:54887113C>T	ENST00000333896.5	+	31	6743	c.6358C>T	c.(6358-6360)Cca>Tca	p.P2120S	SPTBN1_ENST00000356805.4_Missense_Mutation_p.P2133S	NM_178313.2	NP_842565.2	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1	2133					actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			NS(1)|breast(8)|central_nervous_system(2)|endometrium(10)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(11)|lung(27)|ovary(4)|prostate(2)|skin(5)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	82			Lung(47;0.24)			AAACGGTTTGCCAGCTGAACA	0.473000													4	219					0	0	1	0	0
CACNB2	783	broad.mit.edu	37	10	18690942	18690942	+	Silent	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr10:18690942G>A	ENST00000396576.2	+	2	639	c.138G>A	c.(136-138)cgG>cgA	p.R46R	CACNB2_ENST00000282343.8_Silent_p.R73R|CACNB2_ENST00000377319.3_Silent_p.R46R|CACNB2_ENST00000352115.6_Silent_p.R101R|CACNB2_ENST00000324631.7_Silent_p.R101R|CACNB2_ENST00000377331.2_Silent_p.R73R|CACNB2_ENST00000377328.1_Silent_p.R101R|CACNB2_ENST00000377315.4_Silent_p.R53R|CACNB2_ENST00000377329.4_Silent_p.R47R	NM_000724.3	NP_000715.2	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2 subunit	101					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(8)|lung(12)|prostate(1)|skin(3)|stomach(2)	31					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AAGCGGAGCGGCAGGCCCAGG	0.567000													5	203					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195505830	195505830	+	Silent	SNP	G	G	C			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr3:195505830G>C	ENST00000463781.3	-	2	13080	c.12621C>G	c.(12619-12621)acC>acG	p.T4207T	MUC4_ENST00000349607.4_Intron|MUC4_ENST00000346145.4_Intron|MUC4_ENST00000475231.1_Silent_p.T4207T	NM_018406.6	NP_060876.5	Q99102	MUC4_HUMAN	mucin 4, cell surface associated	970					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity	p.T4207T(1)		NS(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(3)|kidney(1)|large_intestine(5)|lung(23)|ovary(3)|prostate(8)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	51	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		CAGGAAGAGGGGTGGCGTGAC	0.602000													5	24					0	0	1	0	0
PCDHA11	0	broad.mit.edu	37	5	140248828	140248828	+	Missense_Mutation	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr5:140248828G>A	ENST00000398640.2	+	1	140	c.140G>A	c.(139-141)cGc>cAc	p.R47H	PCDHA4_ENST00000512229.2_Intron|PCDHA7_ENST00000525929.1_Intron|PCDHA9_ENST00000532602.1_Intron|PCDHA2_ENST00000526136.1_Intron|PCDHA3_ENST00000522353.2_Intron|PCDHA10_ENST00000506939.2_Intron|PCDHA1_ENST00000394633.3_Intron|PCDHA6_ENST00000529310.1_Intron|PCDHA5_ENST00000529859.1_Intron|PCDHA4_ENST00000530339.1_Intron|PCDHA5_ENST00000529619.1_Intron|PCDHA1_ENST00000504120.2_Intron|PCDHA8_ENST00000531613.1_Intron|PCDHA6_ENST00000527624.1_Intron|PCDHA10_ENST00000307360.5_Intron	NM_018902.3	NP_061725.1														breast(1)|lung(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCGTGGGCCGCATCGCGCAG	0.642000													7	571					0	0	1	0	0
WHAMMP3	0	broad.mit.edu	37	15	23191911	23191911	+	RNA	SNP	C	C	T	rs147199465	by1000genomes	TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr15:23191911C>T	ENST00000400153.2	-	0	1785					NR_003521.1																						TGATTTTCTTCGCACTGATCC	0.408000													5	176					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	121126282	121126282	+	Missense_Mutation	SNP	T	T	C			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr3:121126282T>C	ENST00000273666.6	+	24	3123	c.2852T>C	c.(2851-2853)aTa>aCa	p.I951T	STXBP5L_ENST00000497029.1_Missense_Mutation_p.I925T|STXBP5L_ENST00000471454.1_Missense_Mutation_p.I927T|STXBP5L_ENST00000472879.1_Missense_Mutation_p.I927T|STXBP5L_ENST00000492541.1_Missense_Mutation_p.I951T	NM_014980.2	NP_055795.1	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	951					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				NS(1)|breast(3)|endometrium(3)|kidney(3)|large_intestine(12)|lung(28)|ovary(7)|prostate(3)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(1)	68				GBM - Glioblastoma multiforme(114;0.0694)		CAGTATACAATAATCTGCTCA	0.368000													223	225					0	0	1	0	0
TLR5	7100	broad.mit.edu	37	1	223284937	223284937	+	Missense_Mutation	SNP	G	G	C			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr1:223284937G>C	ENST00000540964.1	-	4	1898	c.1437C>G	c.(1435-1437)ttC>ttG	p.F479L	TLR5_ENST00000342210.6_Missense_Mutation_p.F479L			O60602	TLR5_HUMAN	toll-like receptor 5	479			Missing (in 10% of the population; abolishes flagellin signaling; associated with resistance to SLEB1).		cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			breast(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(3)|kidney(1)|large_intestine(4)|lung(8)|ovary(2)|skin(3)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	32				GBM - Glioblastoma multiforme(131;0.0851)		TTTCTCCAAGGAAAAGCTGTT	0.413000													219	253					0	0	1	0	0
GPT	2875	broad.mit.edu	37	8	145732324	145732324	+	Missense_Mutation	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr8:145732324C>T	ENST00000394955.2	+	11	1655	c.1432C>T	c.(1432-1434)Cgg>Tgg	p.R478W	GPT_ENST00000528431.1_Missense_Mutation_p.R478W	NM_005309.2	NP_005300.1	P24298	ALAT1_HUMAN	glutamic-pyruvate transaminase (alanine aminotransferase)	478					gluconeogenesis	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-alanine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			central_nervous_system(1)|endometrium(1)|lung(2)|ovary(1)	5	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)		L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	GGAGAAACTGCGGCTGCTGCT	0.632000													4	230					0	0	1	0	0
MLLT3	4300	broad.mit.edu	37	9	20414379	20414379	+	Silent	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr9:20414379G>A	ENST00000380338.4	-	5	751	c.465C>T	c.(463-465)agC>agT	p.S155S	MLLT3_ENST00000429426.2_Silent_p.S152S|MLLT3_ENST00000475957.1_5'UTR|MLLT3_ENST00000355930.6_5'UTR	NM_004529.2	NP_004520.2	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	155	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding	p.S155S(4)		central_nervous_system(1)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(6)|lung(24)|ovary(1)|prostate(4)|skin(1)|urinary_tract(7)	66				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctactgctgctgctgc	0.532000			T	MLL	ALL								6	310					0	0	1	0	0
ACSS1	84532	broad.mit.edu	37	20	24993472	24993472	+	Silent	SNP	C	C	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr20:24993472C>A	ENST00000537502.1	-	9	2965	c.1434G>T	c.(1432-1434)ggG>ggT	p.G478G	ACSS1_ENST00000323482.4_Silent_p.G561G|ACSS1_ENST00000542618.1_Silent_p.G440G|ACSS1_ENST00000432802.2_Intron			Q9NUB1	ACS2L_HUMAN	acyl-CoA synthetase short-chain family member 1	561					acetyl-CoA biosynthetic process|ethanol oxidation|xenobiotic metabolic process	mitochondrial matrix	acetate-CoA ligase activity|AMP binding|ATP binding|protein binding			NS(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(11)|ovary(1)|skin(2)|upper_aerodigestive_tract(1)	26					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TCTCTGCGGTCCCCAGCCGGT	0.587000													165	200					4.90236e-94	5.21661e-94	1	1	0
FNDC1	84624	broad.mit.edu	37	6	159688923	159688923	+	Missense_Mutation	SNP	C	C	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr6:159688923C>A	ENST00000297267.9	+	22	5734	c.5534C>A	c.(5533-5535)cCt>cAt	p.P1845H	FNDC1_ENST00000340366.6_Missense_Mutation_p.P1782H	NM_032532.2	NP_115921.2	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1845						extracellular region				NS(1)|autonomic_ganglia(1)|breast(2)|central_nervous_system(1)|endometrium(16)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(29)|liver(2)|lung(23)|ovary(3)|pancreas(1)|prostate(5)|skin(1)|upper_aerodigestive_tract(3)	93		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		AGAACAGGGCCTCAGTCCTAT	0.448000													4	117					2.56e-06	2.656e-06	1	1	0
BAG3	9531	broad.mit.edu	37	10	121432046	121432046	+	Missense_Mutation	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr10:121432046G>A	ENST00000369085.3	+	3	1093	c.787G>A	c.(787-789)Gca>Aca	p.A263T		NM_004281.3	NP_004272.2	O95817	BAG3_HUMAN	BCL2-associated athanogene 3	263					anti-apoptosis|apoptosis|protein folding	cytosol				endometrium(3)|kidney(1)|large_intestine(3)|liver(2)|lung(5)|ovary(2)|prostate(1)|skin(2)|urinary_tract(1)	20		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00187)|BRCA - Breast invasive adenocarcinoma(275;0.148)		CCTGCGGGCGGCATCCCCGTT	0.677000													4	143					0	0	1	0	0
PRPF4	9128	broad.mit.edu	37	9	116049072	116049072	+	Missense_Mutation	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr9:116049072C>T	ENST00000374199.4	+	9	1297	c.896C>T	c.(895-897)gCg>gTg	p.A299V	PRPF4_ENST00000374198.4_Missense_Mutation_p.A300V			O43172	PRP4_HUMAN	pre-mRNA processing factor 4	300						Cajal body|nuclear speck|spliceosomal complex|U4/U6 snRNP	protein binding			NS(1)|breast(2)|endometrium(3)|large_intestine(6)|lung(6)|ovary(2)|pancreas(1)|prostate(2)	23						GCCTCTTGTGCGGCTGATGGC	0.468000													10	1782					0	0	1	0	0
PRKCB	5579	broad.mit.edu	37	16	23847561	23847561	+	Missense_Mutation	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr16:23847561G>A	ENST00000303531.7	+	1	217	c.65G>A	c.(64-66)cGc>cAc	p.R22H	PRKCB_ENST00000321728.7_Missense_Mutation_p.R22H|PRKCB_ENST00000498058.1_Missense_Mutation_p.R22H	NM_002738.6	NP_002729.2	P05771	KPCB_HUMAN	protein kinase C, beta	22					apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			central_nervous_system(3)|large_intestine(1)|lung(2)|ovary(3)	9					Vitamin E(DB00163)	CGCTTCGCCCGCAAAGGCGCC	0.692000													4	234					0	0	1	0	0
SLMAP	7871	broad.mit.edu	37	3	57898112	57898112	+	Silent	SNP	A	A	G			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr3:57898112A>G	ENST00000295951.3	+	18	2819	c.1602A>G	c.(1600-1602)caA>caG	p.Q534Q	SLMAP_ENST00000472546.1_3'UTR|SLMAP_ENST00000295952.3_Silent_p.Q534Q|SLMAP_ENST00000416870.1_Silent_p.Q44Q|SLMAP_ENST00000494088.1_Silent_p.Q44Q|SLMAP_ENST00000449503.2_Silent_p.Q513Q|SLMAP_ENST00000442599.2_Silent_p.Q19Q|SLMAP_ENST00000428312.1_Silent_p.Q551Q|SLMAP_ENST00000495364.1_Silent_p.Q85Q			Q14BN4	SLMAP_HUMAN	sarcolemma associated protein	551					muscle contraction|protein folding	integral to plasma membrane|microtubule organizing center|prefoldin complex|sarcolemma|smooth endoplasmic reticulum	unfolded protein binding			endometrium(5)|kidney(1)|large_intestine(3)|lung(7)|urinary_tract(2)	18				BRCA - Breast invasive adenocarcinoma(55;0.000271)|KIRC - Kidney renal clear cell carcinoma(284;0.0602)|Kidney(284;0.0754)|OV - Ovarian serous cystadenocarcinoma(275;0.182)		TTGCAGCCCAATTGCAGAGGT	0.408000													11	209					0	0	1	0	0
UGT2B11	10720	broad.mit.edu	37	4	70074189	70074189	+	Silent	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr4:70074189C>T	ENST00000446444.1	-	3	890	c.882G>A	c.(880-882)gaG>gaA	p.E294E	RP11-704M14.1_ENST00000504301.1_RNA|RP11-704M14.1_ENST00000505646.1_RNA	NM_001073.1	NP_001064.1	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family, polypeptide B11	294					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(9)|lung(18)|ovary(1)|prostate(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)	42						TCTGTACAAACTCCTCCATTT	0.398000													11	1228					0	0	1	0	0
DMXL1	1657	broad.mit.edu	37	5	118513060	118513060	+	Missense_Mutation	SNP	A	A	G			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr5:118513060A>G	ENST00000311085.8	+	27	6847	c.6767A>G	c.(6766-6768)cAg>cGg	p.Q2256R	DMXL1_ENST00000539542.1_Missense_Mutation_p.Q2256R	NM_005509.4	NP_005500.4	Q9Y485	DMXL1_HUMAN	Dmx-like 1	2256										breast(3)|central_nervous_system(1)|endometrium(14)|kidney(4)|large_intestine(20)|liver(6)|lung(28)|ovary(2)|prostate(5)|skin(2)|upper_aerodigestive_tract(1)	86		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		AGTTCATTTCAGACGAATCAG	0.299000													6	197					0	0	1	0	0
ZNF780A	284323	broad.mit.edu	37	19	40580552	40580552	+	Missense_Mutation	SNP	T	T	G			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr19:40580552T>G	ENST00000450241.2	-	6	2006	c.1695A>C	c.(1693-1695)caA>caC	p.Q565H	ZNF780A_ENST00000414720.2_Intron|ZNF780A_ENST00000595687.2_Missense_Mutation_p.Q599H|ZNF780A_ENST00000340963.5_Missense_Mutation_p.Q599H|ZNF780A_ENST00000455521.1_Missense_Mutation_p.Q600H|AC005614.5_ENST00000595508.1_RNA|ZNF780A_ENST00000594395.1_Missense_Mutation_p.Q600H			O75290	Z780A_HUMAN	zinc finger protein 780A	599					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|endometrium(1)|kidney(1)|large_intestine(7)|lung(16)|upper_aerodigestive_tract(3)|urinary_tract(1)	31	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					GTCGAATAAGTTGCATATGAA	0.403000													7	784					0	0	1	0	0
ZMYM3	9203	broad.mit.edu	37	X	70463797	70463797	+	Missense_Mutation	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chrX:70463797G>A	ENST00000373998.1	-	21	3975	c.3278C>T	c.(3277-3279)gCc>gTc	p.A1093V	ZMYM3_ENST00000314425.5_Missense_Mutation_p.A1105V|ZMYM3_ENST00000353904.2_Missense_Mutation_p.A1105V|ZMYM3_ENST00000373988.1_Missense_Mutation_p.A1107V|ZMYM3_ENST00000373984.3_Missense_Mutation_p.A1100V|ZMYM3_ENST00000489332.1_5'UTR	NM_001171162.1	NP_001164633.1	Q14202	ZMYM3_HUMAN	zinc finger, MYM-type 3	1105					multicellular organismal development	nucleus	DNA binding|zinc ion binding			breast(1)|central_nervous_system(7)|endometrium(11)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(12)|lung(17)|ovary(1)|prostate(9)|upper_aerodigestive_tract(1)|urinary_tract(1)	64	Renal(35;0.156)					AGCTGAGCAGGCGAGAATATC	0.463000													96	108					0	0	1	0	0
NFE2L3	9603	broad.mit.edu	37	7	26225102	26225102	+	Missense_Mutation	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr7:26225102G>A	ENST00000056233.3	+	4	2043	c.1784G>A	c.(1783-1785)tGt>tAt	p.C595Y		NM_004289.6	NP_004280.5	Q9Y4A8	NF2L3_HUMAN	nuclear factor, erythroid 2-like 3	595					transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity	p.C595Y(1)		breast(2)|endometrium(1)|kidney(2)|large_intestine(4)|lung(5)|ovary(1)|prostate(2)|skin(5)|urinary_tract(7)	29						GCGCAGAACTGTCGTAAACGC	0.368000													5	349					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117822234	117822234	+	Missense_Mutation	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr9:117822234C>T	ENST00000350763.4	-	14	4492	c.4081G>A	c.(4081-4083)Gat>Aat	p.D1361N	TNC_ENST00000346706.3_Intron|TNC_ENST00000341037.4_Missense_Mutation_p.D1270N|TNC_ENST00000340094.3_Intron|TNC_ENST00000423613.2_Missense_Mutation_p.D1361N|TNC_ENST00000542877.1_Intron|TNC_ENST00000537320.1_Intron|TNC_ENST00000535648.1_Intron|TNC_ENST00000345230.3_Intron	NM_002160.3	NP_002151.2	P24821	TENA_HUMAN	tenascin C	1361	Fibronectin type-III 9.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			NS(3)|breast(5)|central_nervous_system(4)|endometrium(8)|kidney(6)|large_intestine(32)|liver(1)|lung(39)|ovary(1)|pancreas(2)|prostate(5)|skin(5)|stomach(5)|upper_aerodigestive_tract(2)|urinary_tract(2)	120						CTGAGGCCATCCCAGCCAACC	0.493000													5	127					0	0	1	0	0
CHERP	10523	broad.mit.edu	37	19	16640583	16640583	+	Silent	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr19:16640583C>T	ENST00000546361.2	-	8	1156	c.1005G>A	c.(1003-1005)caG>caA	p.Q335Q	CTD-3222D19.2_ENST00000409035.1_Intron|CHERP_ENST00000198939.6_Silent_p.Q346Q	NM_006387.5	NP_006378.3	Q8IWX8	CHERP_HUMAN	calcium homeostasis endoplasmic reticulum protein	335	Gln-rich.				cellular calcium ion homeostasis|negative regulation of cell proliferation|nervous system development|RNA processing	endoplasmic reticulum|perinuclear region of cytoplasm	RNA binding			endometrium(3)|kidney(2)|large_intestine(4)|lung(9)|ovary(2)|stomach(1)|urinary_tract(3)	24						gctgctgttgctgctgctgct	0.667000													4	111					0	0	1	0	0
C11orf83	790955	broad.mit.edu	37	11	62439431	62439431	+	Missense_Mutation	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr11:62439431C>T	ENST00000531323.1	+	3	670	c.127C>T	c.(127-129)Cca>Tca	p.P43S	C11orf83_ENST00000377953.3_Missense_Mutation_p.P43S			Q6UW78	CK083_HUMAN	chromosome 11 open reading frame 83	43						extracellular region				cervix(1)|lung(1)|prostate(1)	3						TCAGGAGATGCCACTGCAGGA	0.652000													4	129					0	0	1	0	0
CCDC85B	11007	broad.mit.edu	37	11	65658773	65658773	+	Silent	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr11:65658773C>T	ENST00000312579.2	+	1	899	c.519C>T	c.(517-519)tgC>tgT	p.C173C		NM_006848.2	NP_006839.2	Q15834	CC85B_HUMAN	coiled-coil domain containing 85B	173					cell differentiation|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	protein binding								READ - Rectum adenocarcinoma(159;0.166)		TGCCCCCGTGCGGGCCCCGCG	0.721000													3	38					0	0	1	0	0
RRN3P2	0	broad.mit.edu	37	16	29110438	29110438	+	RNA	SNP	T	T	C			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr16:29110438T>C	ENST00000564580.1	+	0	1111																		p.L368P(6)									TTGCAGTATCTTCAGAGTCTG	0.328000													9	501					0	0	1	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887686	12887686	+	Silent	SNP	T	T	C	rs59802947	by1000genomes	TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr1:12887686T>C	ENST00000535591.1	-	3	366	c.171A>G	c.(169-171)agA>agG	p.R57R		NM_001146344.1	NP_001139816.1	O60813	PRA11_HUMAN	PRAME family member 11	57								p.R57R(1)		NS(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|lung(7)|pancreas(2)|skin(4)|urinary_tract(1)	27						GAAGTTTCCATCTCCTGTGGG	0.468000													15	1053					0	0	1	0	0
L3HYPDH	112849	broad.mit.edu	37	14	59950906	59950906	+	Silent	SNP	A	A	G			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr14:59950906A>G	ENST00000247194.4	-	1	242	c.129T>C	c.(127-129)tcT>tcC	p.S43S	RP11-701B16.2_ENST00000554253.1_RNA	NM_144581.1	NP_653182.1			L-3-hydroxyproline dehydratase (trans-)																		GGGTGGGCCCAGACACCTCCG	0.697000											OREG0022712	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	53					0	0	1	0	0
GPR27	2850	broad.mit.edu	37	3	71803791	71803791	+	Silent	SNP	G	G	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr3:71803791G>A	ENST00000304411.2	+	1	591	c.591G>A	c.(589-591)acG>acA	p.T197T	EIF4E3_ENST00000421769.2_Intron	NM_018971.1	NP_061844.1	Q9NS67	GPR27_HUMAN	G protein-coupled receptor 27	197						integral to membrane|plasma membrane	G-protein coupled receptor activity			kidney(1)|lung(2)|ovary(1)|prostate(1)	5		Prostate(10;0.00899)		BRCA - Breast invasive adenocarcinoma(55;1.78e-05)|Epithelial(33;5.75e-05)|Lung(16;0.0012)|LUSC - Lung squamous cell carcinoma(21;0.00156)		TGGGCGCCACGCACCTCGTCT	0.746000													3	23					0	0	1	0	0
PRDM15	63977	broad.mit.edu	37	21	43299470	43299470	+	Missense_Mutation	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr21:43299470C>T	ENST00000422911.1	-	1	112	c.11G>A	c.(10-12)cGc>cAc	p.R4H	PRDM15_ENST00000398548.1_Missense_Mutation_p.R4H|PRDM15_ENST00000269844.3_Missense_Mutation_p.R4H|PRDM15_ENST00000538201.1_5'UTR			P57071	PRD15_HUMAN	PR domain containing 15	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			NS(2)|breast(1)|central_nervous_system(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(9)|lung(11)|ovary(3)|skin(2)|stomach(2)|urinary_tract(1)	43						cggggggcggcggcggggcAT	0.746000													25	39					0	0	1	0	0
LIPC	3990	broad.mit.edu	37	15	58830668	58830668	+	Silent	SNP	C	C	T	rs146362585	by1000genomes	TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr15:58830668C>T	ENST00000414170.3	+	3	512	c.225C>T	c.(223-225)tgC>tgT	p.C75C	LIPC_ENST00000356113.6_Silent_p.C75C|LIPC_ENST00000299022.5_Silent_p.C75C|LIPC_ENST00000433326.2_Silent_p.C75C			P11150	LIPC_HUMAN	lipase, hepatic	75					cholesterol homeostasis|chylomicron remnant clearance|fatty acid biosynthetic process|high-density lipoprotein particle remodeling|intermediate-density lipoprotein particle remodeling|low-density lipoprotein particle remodeling|phosphatidylcholine catabolic process|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein binding|heparin binding|low-density lipoprotein particle binding|phospholipase activity|triglyceride lipase activity	p.C75C(1)		breast(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(15)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	31		Colorectal(260;0.215)		GBM - Glioblastoma multiforme(80;0.00213)|all cancers(107;0.00548)		TACAGGAGTGCGGCTTCAACT	0.473000													7	749					0	0	1	0	0
RP11-50E11.3	0	broad.mit.edu	37	10	52390332	52390332	+	RNA	SNP	C	C	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr10:52390332C>T	ENST00000443374.1	+	0	1025																											CCAAAAAGGCCGTCATTTTTT	0.333000													4	125					0	0	1	0	0
PHF13	148479	broad.mit.edu	37	1	6680069	6680071	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr1:6680069_6680071delGAA	ENST00000377648.4	+	3	730_732	c.348_350delGAA	c.(346-351)ctg>ct	p.LK116del	PHF13_ENST00000495385.1_Intron	NM_153812.2	NP_722519.2	Q86YI8	PHF13_HUMAN	PHD finger protein 13	116					cell division|chromatin modification|mitotic chromosome condensation	nucleoplasm	chromatin binding|methylated histone residue binding|zinc ion binding			endometrium(3)|large_intestine(1)|lung(3)	7	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;1.46e-33)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.19e-07)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|STAD - Stomach adenocarcinoma(132;0.0165)|READ - Rectum adenocarcinoma(331;0.0642)		cggacaagctgaagaagaagaag	0.576													11	291	---	---	---	---					
SNIP1	79753	broad.mit.edu	37	1	38003368	38003370	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr1:38003368_38003370delTCC	ENST00000296215.6	-	4	1242_1244	c.1170_1172delGGA	c.(1168-1173)gaa>ga	p.EE390del		NM_024700.3	NP_078976.2	Q8TAD8	SNIP1_HUMAN	Smad nuclear interacting protein 1	390	Poly-Glu.				production of miRNAs involved in gene silencing by miRNA	nucleus	protein binding			breast(2)|cervix(2)|endometrium(1)|large_intestine(3)|lung(15)|ovary(1)|upper_aerodigestive_tract(1)	25		Myeloproliferative disorder(586;0.0393)				AGACACTTCTTCCTCCTCCTCCT	0.448													9	600	---	---	---	---					
NRD1	4898	broad.mit.edu	37	1	52290962	52290962	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr1:52290962delA	ENST00000354831.7	-	8	1426	c.1237delT	c.(1237-1239)ggfs	p.W413fs	NRD1_ENST00000544028.1_Frame_Shift_Del_p.W213fs|NRD1_ENST00000485608.1_5'UTR|NRD1_ENST00000539524.1_Frame_Shift_Del_p.W281fs|NRD1_ENST00000352171.7_Frame_Shift_Del_p.W345fs	NM_002525.2	NP_002516.2	O43847	NRDC_HUMAN	nardilysin (N-arginine dibasic convertase)	344					cell migration|cell proliferation|neuromuscular junction development|positive regulation of membrane protein ectodomain proteolysis|proteolysis|regulation of endopeptidase activity	cell surface|cytosol	epidermal growth factor binding|metalloendopeptidase activity|zinc ion binding			NS(1)|breast(2)|cervix(1)|endometrium(4)|kidney(1)|large_intestine(6)|lung(9)|pancreas(1)|prostate(1)|skin(1)	27						ATCTTACCCCAAAAAAATTTT	0.318													7	1104	---	---	---	---					
DMRTB1	63948	broad.mit.edu	37	1	53930351	53930353	+	In_Frame_Del	DEL	GCC	GCC	-	rs75818218		TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr1:53930351_53930353delGCC	ENST00000371445.3	+	3	847_849	c.792_794delGCC	c.(790-795)ctg>ct	p.LP264del	DMRTB1_ENST00000463126.1_3'UTR	NM_033067.1	NP_149056.1	Q96MA1	DMRTB_HUMAN	DMRT-like family B with proline-rich C-terminal, 1	264	Pro-rich.				sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(3)|lung(5)|ovary(1)|skin(1)	10						GCTACTACCTgccgccgccgccg	0.670													8	330	---	---	---	---					
COL11A1	1301	broad.mit.edu	37	1	103355065	103355065	+	Frame_Shift_Del	DEL	T	T	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr1:103355065delT	ENST00000358392.2	-	59	4763	c.4446delA	c.(4444-4446)aafs	p.K1482fs	COL11A1_ENST00000370096.3_Frame_Shift_Del_p.K1470fs|COL11A1_ENST00000512756.1_Frame_Shift_Del_p.K1354fs|COL11A1_ENST00000353414.4_Frame_Shift_Del_p.K1431fs	NM_080629.2	NP_542196.2	P12107	COBA1_HUMAN	collagen, type XI, alpha 1	1470	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			NS(3)|biliary_tract(1)|breast(5)|central_nervous_system(2)|cervix(1)|endometrium(17)|kidney(8)|large_intestine(28)|lung(157)|ovary(6)|pancreas(2)|prostate(6)|skin(9)|stomach(1)|upper_aerodigestive_tract(11)|urinary_tract(1)	258		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CTCGGTCACCTTTTTCCCCTT	0.408													7	644	---	---	---	---					
RP11-417J8.6	0	broad.mit.edu	37	1	142713977	142713977	+	RNA	DEL	T	T	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr1:142713977delT	ENST00000369381.2	-	0	628																											ATCCATATACTAAAAAGGTTA	0.294													8	90	---	---	---	---					
RP11-435B5.5	0	broad.mit.edu	37	1	143391923	143391924	+	RNA	DEL	AT	AT	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr1:143391923_143391924delAT	ENST00000428624.1	+	0	2065				RP11-435B5.4_ENST00000423249.1_lincRNA																							TATTTTGGAGATATATATATAT	0.262													9	89	---	---	---	---					
KMO	8564	broad.mit.edu	37	1	241753558	241753558	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr1:241753558delA	ENST00000366559.4	+	14	1564	c.1253delA	c.(1252-1254)cafs	p.Q418fs	KMO_ENST00000366558.3_Frame_Shift_Del_p.Q405fs|KMO_ENST00000366557.4_Frame_Shift_Del_p.Q384fs	NM_003679.4	NP_003670.2	O15229	KMO_HUMAN	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	418					pyridine nucleotide biosynthetic process|response to salt stress	cytosol|integral to membrane|mitochondrial outer membrane	electron carrier activity|flavin adenine dinucleotide binding|kynurenine 3-monooxygenase activity|NAD(P)H oxidase activity			NS(1)|breast(2)|cervix(1)|endometrium(5)|kidney(1)|large_intestine(8)|lung(10)|ovary(2)|prostate(1)|skin(2)	33	Ovarian(103;0.103)|all_lung(81;0.23)		OV - Ovarian serous cystadenocarcinoma(106;0.0176)			TGGCATTGGCAAAAAAAGGTT	0.313													7	705	---	---	---	---					
AC007092.1	0	broad.mit.edu	37	2	58688842	58688843	+	RNA	DEL	CT	CT	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr2:58688842_58688843delCT	ENST00000452840.1	+	0	127																											TCTCTGCTAGCTCTCTCTCTCT	0.465													7	194	---	---	---	---					
TTN	7273	broad.mit.edu	37	2	179517014	179517014	+	Frame_Shift_Del	DEL	T	T	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr2:179517014delT	ENST00000589042.1	-	203	39412	c.39188delA	c.(39187-39189)agfs	p.K13063fs	TTN_ENST00000359218.5_Intron|TTN_ENST00000460472.2_Intron|TTN-AS1_ENST00000589830.1_RNA|TTN-AS1_ENST00000589487.1_RNA|TTN-AS1_ENST00000585451.1_RNA|TTN_ENST00000591111.1_Frame_Shift_Del_p.K11556fs|TTN_ENST00000342992.6_Frame_Shift_Del_p.K10629fs|TTN_ENST00000342175.6_Intron|TTN-AS1_ENST00000592630.1_RNA|TTN-AS1_ENST00000431752.1_RNA	NM_001267550.1	NP_001254479.1	Q8WZ42	TITIN_HUMAN	titin	11414							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26)	1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACTTCAGGCTTTTTAGGAGG	0.378													7	1631	---	---	---	---					
DENND6A	201627	broad.mit.edu	37	3	57627438	57627438	+	Frame_Shift_Del	DEL	A	A	-	rs34959359		TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr3:57627438delA	ENST00000311128.5	-	12	1144	c.1074delT	c.(1072-1074)ttfs	p.F358fs	RP11-755B10.2_ENST00000470427.1_RNA	NM_152678.2	NP_689891.1			DENN/MADD domain containing 6A																		GTGTCTTAGCAAAAAAAGGGT	0.353													8	445	---	---	---	---					
VGLL3	389136	broad.mit.edu	37	3	87027857	87027859	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr3:87027857_87027859delCTC	ENST00000398399.2	-	2	583_585	c.220_222delGAG	c.(220-222)del	p.E74del	VGLL3_ENST00000383698.3_In_Frame_Del_p.E74del	NM_016206.2	NP_057290.2	A8MV65	VGLL3_HUMAN	vestigial like 3 (Drosophila)	74					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				NS(1)|breast(1)|endometrium(4)|large_intestine(2)|lung(11)	19	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		GCTGGtctttctcctcctcctcc	0.502													9	240	---	---	---	---					
MMRN1	22915	broad.mit.edu	37	4	90844391	90844393	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr4:90844391_90844393delAGC	ENST00000394980.1	+	5	1242_1244	c.923_925delAGC	c.(922-927)gag>g	p.EQ308del	MMRN1_ENST00000508372.1_In_Frame_Del_p.EQ50del|MMRN1_ENST00000394981.1_In_Frame_Del_p.EQ274del|MMRN1_ENST00000264790.2_In_Frame_Del_p.EQ308del			Q13201	MMRN1_HUMAN	multimerin 1	308					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				breast(2)|cervix(1)|endometrium(5)|kidney(1)|large_intestine(12)|liver(2)|lung(34)|ovary(5)|prostate(1)|skin(6)|stomach(1)|urinary_tract(2)	72		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		GGAGTAGCTGAGCAGCAGCAGCA	0.448													8	1189	---	---	---	---					
FRG1	2483	broad.mit.edu	37	4	190876218	190876219	+	Frame_Shift_Ins	INS	-	-	AT			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr4:190876218_190876219insAT	ENST00000226798.4	+	5	566_567	c.344_345insAT	c.(343-345)atafs	p.I115fs	FRG1_ENST00000514482.1_3'UTR	NM_004477.2	NP_004468.1	Q14331	FRG1_HUMAN	FSHD region gene 1	115					rRNA processing	Cajal body|catalytic step 2 spliceosome|nuclear speck|nucleolus				NS(2)|breast(1)|central_nervous_system(1)|endometrium(2)|lung(11)|ovary(1)|pancreas(1)|prostate(5)|skin(7)|urinary_tract(1)	32		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;1.73e-30)|Epithelial(3;5.85e-30)|OV - Ovarian serous cystadenocarcinoma(60;5.56e-15)|BRCA - Breast invasive adenocarcinoma(30;9.14e-06)|Lung(3;3.54e-05)|STAD - Stomach adenocarcinoma(60;8.83e-05)|LUSC - Lung squamous cell carcinoma(40;0.000198)|GBM - Glioblastoma multiforme(59;0.00892)|READ - Rectum adenocarcinoma(43;0.161)		GGCTATGGAAAATATCTTGGTA	0.361													8	587	---	---	---	---					
PAPD7	11044	broad.mit.edu	37	5	6755013	6755014	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr5:6755013_6755014delAC	ENST00000230859.6	+	13	1713_1714	c.1584_1585delAC	c.(1582-1587)aaacfs	p.KH528fs		NM_001171805.1|NM_001171806.1|NM_006999.4	NP_001165276.1|NP_001165277.1|NP_008930.1	Q5XG87	PAPD7_HUMAN	PAP associated domain containing 7	528					cell division|DNA replication|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|SMC protein binding			cervix(1)|endometrium(2)|large_intestine(8)|lung(10)|ovary(2)|pancreas(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	27						GGAGGAAAAAACACACACACAC	0.653													7	200	---	---	---	---					
MOCS2	4338	broad.mit.edu	37	5	52397308	52397308	+	Frame_Shift_Del	DEL	T	T	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr5:52397308delT	ENST00000396954.3	-	5	935	c.258delA	c.(256-258)aafs	p.K86fs	MOCS2_ENST00000584946.1_3'UTR|MOCS2_ENST00000582677.1_Intron|MOCS2_ENST00000361377.4_Intron|MOCS2_ENST00000450852.3_3'UTR|MOCS2_ENST00000508922.1_3'UTR|MOCS2_ENST00000510818.2_3'UTR	NM_004531.3	NP_004522.1	O96033	MOC2A_HUMAN	molybdenum cofactor synthesis 2	0					Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol|molybdopterin synthase complex	nucleotide binding			endometrium(1)|lung(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	5		Lung NSC(810;3.08e-05)|Breast(144;0.0848)				AGCTAATGACTTTTTTCCCTT	0.318													8	1820	---	---	---	---					
ANKHD1	54882	broad.mit.edu	37	5	139905676	139905676	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr5:139905676delA	ENST00000297183.6	+	26	4712	c.4588delA	c.(4588-4590)aafs	p.K1531fs	ANKHD1-EIF4EBP3_ENST00000532219.1_Frame_Shift_Del_p.K1531fs|ANKHD1_ENST00000360839.2_Frame_Shift_Del_p.K1531fs	NM_020690.5	NP_065741.3			ankyrin repeat and KH domain containing 1											breast(2)|endometrium(8)|kidney(6)|large_intestine(14)|lung(18)|ovary(5)|prostate(2)|skin(3)|urinary_tract(2)	60			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTGTTTGGGAAAAAAAGGGC	0.423													7	1046	---	---	---	---					
NSD1	64324	broad.mit.edu	37	5	176710903	176710903	+	Frame_Shift_Del	DEL	T	T	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr5:176710903delT	ENST00000439151.2	+	20	6170	c.6125delT	c.(6124-6126)ctfs	p.L2042fs	NSD1_ENST00000361032.4_Frame_Shift_Del_p.L1939fs|NSD1_ENST00000354179.4_Frame_Shift_Del_p.L1773fs|NSD1_ENST00000347982.4_Frame_Shift_Del_p.L1773fs	NM_022455.4	NP_071900.2	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	2042	SET.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(15)|haematopoietic_and_lymphoid_tissue(2)|kidney(13)|large_intestine(18)|lung(24)|ovary(2)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(7)|urinary_tract(3)	96	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		CGTGTAGGCCTTTTTGCACTA	0.438			T	NUP98	AML		Sotos Syndrome		Weaver syndrome;Sotos syndrome;Beckwith-Wiedemann syndrome	HNSCC(47;0.14)			7	1077	---	---	---	---					
C6orf165	154313	broad.mit.edu	37	6	88144700	88144700	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr6:88144700delA	ENST00000507897.1	+	11	1506	c.1423delA	c.(1423-1425)aafs	p.K476fs	C6ORF165_ENST00000369562.4_Frame_Shift_Del_p.K476fs			Q8IYR0	CF165_HUMAN	chromosome 6 open reading frame 165	476										NS(1)|central_nervous_system(1)|large_intestine(5)|lung(8)|prostate(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	19		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		AGAAAAGGCCAAAAAAAATAC	0.269													7	713	---	---	---	---					
MANEA	79694	broad.mit.edu	37	6	96034896	96034897	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr6:96034896_96034897delTG	ENST00000369293.1	+	2	715_716	c.581_582delTG	c.(580-582)cfs	p.L194fs	MANEA_ENST00000358812.4_Intron			Q5SRI9	MANEA_HUMAN	mannosidase, endo-alpha	0	Catalytic (Probable).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	glycoprotein endo-alpha-1,2-mannosidase activity			breast(2)|endometrium(3)|kidney(2)|liver(2)|lung(13)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)	26		all_cancers(76;1.01e-06)|Acute lymphoblastic leukemia(125;3.58e-09)|all_hematologic(75;1.22e-06)|all_epithelial(107;0.00433)|Colorectal(196;0.0341)		BRCA - Breast invasive adenocarcinoma(108;0.148)		tgtttgtgtctgtatatatgca	0.282													17	161	---	---	---	---					
ARHGAP18	93663	broad.mit.edu	37	6	129959602	129959603	+	Frame_Shift_Ins	INS	-	-	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr6:129959602_129959603insT	ENST00000368149.2	-	3	576_577	c.488_489insA	c.(487-489)aaafs	p.K163fs		NM_033515.2	NP_277050.2	Q8N392	RHG18_HUMAN	Rho GTPase activating protein 18	163					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			NS(2)|endometrium(1)|large_intestine(4)|lung(4)|ovary(2)|prostate(2)|skin(3)	18				OV - Ovarian serous cystadenocarcinoma(136;0.0621)|GBM - Glioblastoma multiforme(226;0.0638)|all cancers(137;0.074)		GGTACTGTTTGTTTTTTTTCCT	0.421													9	964	---	---	---	---					
ICA1	3382	broad.mit.edu	37	7	8198251	8198251	+	Frame_Shift_Del	DEL	T	T	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr7:8198251delT	ENST00000402384.3	-	7	877	c.611delA	c.(610-612)acfs	p.N204fs	ICA1_ENST00000396675.3_Frame_Shift_Del_p.N204fs|ICA1_ENST00000407906.1_Frame_Shift_Del_p.N204fs|ICA1_ENST00000401396.1_Frame_Shift_Del_p.N192fs|ICA1_ENST00000265577.7_Frame_Shift_Del_p.N203fs|ICA1_ENST00000422063.2_Frame_Shift_Del_p.N204fs|ICA1_ENST00000406470.2_Frame_Shift_Del_p.N204fs			Q05084	ICA69_HUMAN	islet cell autoantigen 1, 69kDa	204	AH.				neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane		p.N204fs*5(3)		breast(1)|central_nervous_system(2)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(6)|lung(8)|urinary_tract(1)	23		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		TTTGTCAAAGTTTTTTTTTGC	0.378													8	563	---	---	---	---					
TRGC1	0	broad.mit.edu	37	7	38301855	38301856	+	RNA	DEL	GT	GT	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr7:38301855_38301856delGT	ENST00000443402.2	-	0	330					NM_001003799.1|NM_001003806.1	NP_001003799.1|NP_001003806.1																					TCAATTGTTCGTGTGTGTGTGT	0.356													11	583	---	---	---	---					
RP5-905H7.3	0	broad.mit.edu	37	7	62701951	62701952	+	RNA	INS	-	-	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr7:62701951_62701952insA	ENST00000451381.1	-	0	55																											CTTTTTTGGAGAAAAAATATAT	0.337													7	19	---	---	---	---					
CCT6P3	0	broad.mit.edu	37	7	64528813	64528814	+	RNA	INS	-	-	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr7:64528813_64528814insT	ENST00000426828.1	+	0	621					NR_033416.1																						CTTTCTGTAACTTTTTTTTTTT	0.317													8	59	---	---	---	---					
LMTK2	22853	broad.mit.edu	37	7	97736519	97736521	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr7:97736519_97736521delGCT	ENST00000297293.5	+	1	323_325	c.30_32delGCT	c.(28-33)agg>ag	p.RL10del		NM_014916.3	NP_055731.2	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2	10					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(2)|breast(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(13)|lung(25)|ovary(1)|pancreas(2)|skin(2)|stomach(3)	59	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					TGCGGCGGAGGCTGCTGCTGCTG	0.764													4	7	---	---	---	---					
OR9A4	130075	broad.mit.edu	37	7	141619203	141619203	+	Frame_Shift_Del	DEL	T	T	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr7:141619203delT	ENST00000548136.1	+	1	587	c.528delT	c.(526-528)aafs	p.N176fs	MGAM_ENST00000497554.1_Intron	NM_001001656.1	NP_001001656.1	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A, member 4	176					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			NS(1)|endometrium(2)|large_intestine(9)|lung(7)|prostate(1)|skin(2)	22	Melanoma(164;0.0171)					TGGTGAACAATTTTTTTTGTG	0.383													9	1156	---	---	---	---					
EPHA1-AS1	0	broad.mit.edu	37	7	143208738	143208738	+	RNA	DEL	C	C	-	rs34333193		TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr7:143208738delC	ENST00000429289.1	+	0	263					NR_033897.1																						CCTGCGGTGGCCCCGGCGTGC	0.667													9	13	---	---	---	---					
DPYS	1807	broad.mit.edu	37	8	105440214	105440214	+	Frame_Shift_Del	DEL	T	T	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr8:105440214delT	ENST00000351513.2	-	6	1218	c.1086delA	c.(1084-1086)aafs	p.K362fs		NM_001385.2	NP_001376.1	Q14117	DPYS_HUMAN	dihydropyrimidinase	362					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			NS(1)|breast(1)|endometrium(2)|kidney(2)|large_intestine(7)|lung(23)|ovary(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	41			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CCACCACGCCTTTTTCCCATA	0.478													7	1011	---	---	---	---					
OXR1	55074	broad.mit.edu	37	8	107704955	107704955	+	Splice_Site	DEL	G	G	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr8:107704955delG	ENST00000445937.1	+	7	786		c.e7-1		OXR1_ENST00000452423.2_Splice_Site|OXR1_ENST00000312046.6_Splice_Site|OXR1_ENST00000442977.2_Splice_Site|OXR1_ENST00000497705.1_Splice_Site|OXR1_ENST00000531443.1_Splice_Site|OXR1_ENST00000517566.2_Splice_Site	NM_018002.3	NP_060472.2	Q8N573	OXR1_HUMAN	oxidation resistance 1						cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion				NS(2)|breast(2)|endometrium(2)|large_intestine(9)|lung(10)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(4)	31			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			AAAAAAAAAAGAATCCTGATG	0.348													11	327	---	---	---	---					
KANK1	23189	broad.mit.edu	37	9	732475	732477	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr9:732475_732477delGAG	ENST00000382303.1	+	10	3755_3757	c.3103_3105delGAG	c.(3103-3105)del	p.E1039del	KANK1_ENST00000382293.3_In_Frame_Del_p.E881del|KANK1_ENST00000382297.2_In_Frame_Del_p.E1039del|KANK1_ENST00000489369.1_3'UTR	NM_001256876.1	NP_001243805.1	Q14678	KANK1_HUMAN	KN motif and ankyrin repeat domains 1	1039					negative regulation of actin filament polymerization	cytoplasm				autonomic_ganglia(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(7)|kidney(3)|large_intestine(9)|lung(8)|ovary(3)|pancreas(1)|prostate(3)|stomach(4)|upper_aerodigestive_tract(1)	43		Lung NSC(10;9.84e-12)|all_lung(10;1.02e-11)|Breast(48;0.128)		Epithelial(6;0.000153)|OV - Ovarian serous cystadenocarcinoma(1;0.000358)|Lung(218;0.0222)		TCTTGAAGAAGAGGAGGAGGAGG	0.463													7	535	---	---	---	---					
UPF2	26019	broad.mit.edu	37	10	11990430	11990432	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr10:11990430_11990432delCTT	ENST00000356352.2	-	15	3583_3585	c.3110_3112delAAG	c.(3109-3114)ggt>g	p.EG1037del	UPF2_ENST00000397053.2_In_Frame_Del_p.EG1037del|UPF2_ENST00000357604.5_In_Frame_Del_p.EG1037del			Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog (yeast)	1037	Glu-rich.|Sufficient for interaction with EIF4A1 and EIF1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			breast(3)|central_nervous_system(3)|cervix(1)|endometrium(5)|kidney(6)|large_intestine(14)|lung(17)|ovary(2)|skin(3)|urinary_tract(2)	56		Renal(717;0.228)				tcagccccaccttcttcttcttc	0.374													7	216	---	---	---	---					
ANK3	288	broad.mit.edu	37	10	61833451	61833453	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr10:61833451_61833453delTTC	ENST00000280772.1	-	37	7377_7379	c.7186_7188delGAA	c.(7186-7188)del	p.E2396del	ANK3_ENST00000373827.2_Intron|ANK3_ENST00000503366.1_Intron|ANK3_ENST00000355288.2_Intron	NM_020987.3	NP_066267.2	Q12955	ANK3_HUMAN	ankyrin 3, node of Ranvier (ankyrin G)	2396	Poly-Glu.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			NS(4)|breast(7)|central_nervous_system(5)|endometrium(19)|haematopoietic_and_lymphoid_tissue(5)|kidney(14)|large_intestine(30)|liver(2)|lung(59)|ovary(8)|pancreas(2)|prostate(5)|skin(26)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(7)	196						CAGCAGTAAGTTCTTCTTCTTCT	0.438													7	433	---	---	---	---					
ADD3	120	broad.mit.edu	37	10	111893350	111893350	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr10:111893350delA	ENST00000277900.8	+	14	2364	c.1999delA	c.(1999-2001)aafs	p.K669fs	ADD3_ENST00000356080.4_Frame_Shift_Del_p.K701fs|ADD3_ENST00000360162.3_Frame_Shift_Del_p.K669fs	NM_001121.2	NP_001112.2	Q9UEY8	ADDG_HUMAN	adducin 3 (gamma)	701						cytoskeleton	actin binding|calmodulin binding|metal ion binding|structural constituent of cytoskeleton			central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(4)|lung(9)|ovary(2)|pancreas(1)|prostate(1)|skin(3)	29		Breast(234;0.052)|Lung NSC(174;0.223)		Epithelial(162;4.15e-05)|all cancers(201;0.000587)|BRCA - Breast invasive adenocarcinoma(275;0.0742)		GAAAAAGAACAAAAAAAAGGA	0.333													7	593	---	---	---	---					
PHRF1	57661	broad.mit.edu	37	11	592586	592588	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr11:592586_592588delGAG	ENST00000264555.5	+	6	660_662	c.532_534delGAG	c.(532-534)del	p.E181del	PHRF1_ENST00000533464.1_In_Frame_Del_p.E177del|PHRF1_ENST00000416188.2_In_Frame_Del_p.E181del|PHRF1_ENST00000413872.2_In_Frame_Del_p.E180del	NM_020901.2	NP_065952.2	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	181	Poly-Glu.						RNA polymerase binding|zinc ion binding			breast(1)|cervix(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|lung(13)|urinary_tract(2)	28						CAAAGCGAGCGAGGAGGAGGAGG	0.616													7	638	---	---	---	---					
ACTN3	89	broad.mit.edu	37	11	66321927	66321928	+	RNA	INS	-	-	A	rs141435934		TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr11:66321927_66321928insA	ENST00000513398.1	+	0	566				ACTN3_ENST00000502692.1_RNA	NM_001104.2	NP_001095.1	Q08043	ACTN3_HUMAN	actinin, alpha 3 (gene/pseudogene)						focal adhesion assembly|muscle filament sliding|regulation of apoptosis	actin filament|cytosol|focal adhesion|pseudopodium	actin binding|calcium ion binding|integrin binding|protein homodimerization activity|structural constituent of muscle			breast(1)|endometrium(4)|kidney(1)|large_intestine(2)|lung(2)	10						gaccctgtctcaaaaaaaaaaa	0.540													5	8	---	---	---	---					
PAK1	5058	broad.mit.edu	37	11	77069990	77069992	+	In_Frame_Del	DEL	CAT	CAT	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr11:77069990_77069992delCAT	ENST00000356341.3	-	6	1079_1081	c.548_550delATG	c.(547-552)gct>g	p.DA183del	PAK1_ENST00000528203.1_In_Frame_Del_p.DA85del|PAK1_ENST00000530617.1_In_Frame_Del_p.DA183del|PAK1_ENST00000525542.1_5'UTR|PAK1_ENST00000278568.4_In_Frame_Del_p.DA183del	NM_002576.4	NP_002567.3	Q13153	PAK1_HUMAN	p21 protein (Cdc42/Rac)-activated kinase 1	183	Interaction with CRIPAK.				apoptosis|axon guidance|cytoskeleton organization|ER-nucleus signaling pathway|positive regulation of JUN kinase activity|positive regulation of peptidyl-serine phosphorylation|protein autophosphorylation|T cell costimulation|T cell receptor signaling pathway	cytosol|focal adhesion|Golgi apparatus	ATP binding|collagen binding|protein binding|protein serine/threonine kinase activity			NS(1)|breast(1)|endometrium(2)|kidney(3)|large_intestine(6)|lung(13)|skin(2)|stomach(1)	29	all_cancers(14;1.75e-18)					GGTGGGGTAGcatcatcatcatc	0.478													12	568	---	---	---	---					
SCAF11	9169	broad.mit.edu	37	12	46320707	46320708	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr12:46320707_46320708delTC	ENST00000465950.1	-	1	3040_3041	c.1831_1832delGA	c.(1831-1833)afs	p.E611fs	SCAF11_ENST00000369367.3_Frame_Shift_Del_p.E926fs|SCAF11_ENST00000419565.2_Frame_Shift_Del_p.E926fs|SCAF11_ENST00000549162.1_Frame_Shift_Del_p.E734fs			Q99590	SCAFB_HUMAN	SR-related CTD-associated factor 11	926					spliceosome assembly	nucleus	protein binding|zinc ion binding			breast(2)|central_nervous_system(1)|endometrium(2)|kidney(8)|large_intestine(17)|lung(25)|ovary(3)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(3)	69						GGTTCTCCTTTCTCTCTCTCTC	0.446													18	994	---	---	---	---					
KMT2D	8085	broad.mit.edu	37	12	49445917	49445917	+	Frame_Shift_Del	DEL	C	C	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr12:49445917delC	ENST00000301067.7	-	10	1548	c.1549delG	c.(1549-1551)agfs	p.E517fs		NM_003482.3	NP_003473.3			lysine (K)-specific methyltransferase 2D																		AAGGGCGACTCCTCCAGTGGA	0.617													117	150	---	---	---	---					
UTP20	27340	broad.mit.edu	37	12	101680156	101680157	+	Frame_Shift_Ins	INS	-	-	T			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr12:101680156_101680157insT	ENST00000261637.4	+	5	558_559	c.384_385insT	c.(382-387)gattttfs	p.DF128fs		NM_014503.2	NP_055318.2	O75691	UTP20_HUMAN	UTP20, small subunit (SSU) processome component, homolog (yeast)	128					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			NS(3)|biliary_tract(1)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(9)|kidney(2)|large_intestine(26)|lung(30)|ovary(2)|prostate(3)|skin(1)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(2)	88						ACTTTCCAGAGTTTTTTTTGAC	0.396													12	1296	---	---	---	---					
TPTE2P6	0	broad.mit.edu	37	13	25157747	25157748	+	RNA	INS	-	-	T	rs144668552	by1000genomes	TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr13:25157747_25157748insT	ENST00000453498.1	+	0	554																											AAAATGGGAGGTTTTTTTAGGG	0.411													8	106	---	---	---	---					
ESD	2098	broad.mit.edu	37	13	47354112	47354112	+	Frame_Shift_Del	DEL	T	T	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr13:47354112delT	ENST00000378720.3	-	8	740	c.558delA	c.(556-558)aafs	p.K186fs	ESD_ENST00000378697.1_Frame_Shift_Del_p.K157fs|ESD_ENST00000495654.1_5'UTR	NM_001984.1	NP_001975.1	P10768	ESTD_HUMAN	esterase D	186						cytoplasmic membrane-bounded vesicle	carboxylesterase activity|S-formylglutathione hydrolase activity			endometrium(1)|kidney(2)|large_intestine(1)|lung(4)|ovary(1)	9		all_lung(13;3.54e-08)|Lung NSC(96;9.1e-06)|Breast(56;0.000148)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)		GBM - Glioblastoma multiforme(144;2.66e-05)	Glutathione(DB00143)	CACTAAAGGCTTTTTTGCCCC	0.353													7	725	---	---	---	---					
FBXL3	26224	broad.mit.edu	37	13	77581683	77581683	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr13:77581683delA	ENST00000355619.5	-	5	1208	c.884delT	c.(883-885)tafs	p.L295fs	FBXL3_ENST00000477982.1_Intron	NM_012158.2	NP_036290.1	Q9UKT7	FBXL3_HUMAN	F-box and leucine-rich repeat protein 3	295					regulation of circadian rhythm|rhythmic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity	p.L295fs*3(1)		breast(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(5)|urinary_tract(1)	16		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.218)		GBM - Glioblastoma multiforme(99;0.0521)		TTCTTCATATAAAAAAAAATA	0.418													8	303	---	---	---	---					
TEP1	7011	broad.mit.edu	37	14	20874475	20874477	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr14:20874475_20874477delCCT	ENST00000262715.5	-	3	690_692	c.650_652delAGG	c.(649-654)gtg>g	p.EV217del	TEP1_ENST00000556935.1_In_Frame_Del_p.EV217del	NM_007110.4	NP_009041.2	Q99973	TEP1_HUMAN	telomerase-associated protein 1	217					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			NS(4)|breast(1)|central_nervous_system(4)|endometrium(10)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(9)|lung(48)|ovary(7)|pancreas(1)|prostate(2)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	96	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		AGATCCTCCACCTCCTCCTCCTC	0.498													7	380	---	---	---	---					
RBM25	58517	broad.mit.edu	37	14	73572607	73572608	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr14:73572607_73572608delAG	ENST00000261973.7	+	11	1480_1481	c.1195_1196delAG	c.(1195-1197)afs	p.R399fs	RBM25_ENST00000527432.1_Frame_Shift_Del_p.R399fs	NM_021239.2	NP_067062.1	P49756	RBM25_HUMAN	RNA binding motif protein 25	399	Arg-rich.|Glu-rich.|Necessary for nuclear speckle localization.				apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			breast(2)|central_nervous_system(2)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(7)|lung(6)|ovary(2)|pancreas(1)	31				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		agagcgggaaagagagagagag	0.446													11	157	---	---	---	---					
ZFP90	146198	broad.mit.edu	37	16	68598462	68598463	+	Frame_Shift_Ins	INS	-	-	A			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr16:68598462_68598463insA	ENST00000570495.1	+	5	2064_2065	c.1772_1773insA	c.(1771-1773)caafs	p.Q591fs	ZFP90_ENST00000398253.2_Frame_Shift_Ins_p.Q591fs|RP11-615I2.7_ENST00000571720.1_RNA|ZFP90_ENST00000563169.2_Frame_Shift_Ins_p.Q591fs			Q8TF47	ZFP90_HUMAN	ZFP90 zinc finger protein	591					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|kidney(2)|large_intestine(7)|lung(10)|ovary(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)	27		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00233)|Epithelial(162;0.0184)|all cancers(182;0.0946)		AGAGCCTTCCGAAAAAAAACCA	0.411													10	1078	---	---	---	---					
FENDRR	0	broad.mit.edu	37	16	86531072	86531073	+	RNA	INS	-	-	C			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr16:86531072_86531073insC	ENST00000595886.1	-	0	206					NR_033925.1																						CTCCCAGGAcgccccccccgcc	0.723													3	3	---	---	---	---					
FKBP10	60681	broad.mit.edu	37	17	39975559	39975559	+	Frame_Shift_Del	DEL	C	C	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr17:39975559delC	ENST00000321562.4	+	5	929	c.825delC	c.(823-825)ctfs	p.L275fs	FKBP10_ENST00000544340.1_5'UTR	NM_021939.3	NP_068758.3	Q96AY3	FKB10_HUMAN	FK506 binding protein 10, 65 kDa	275					protein folding	endoplasmic reticulum lumen|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			cervix(1)|endometrium(3)|large_intestine(1)|lung(5)|ovary(1)|prostate(1)|stomach(1)|upper_aerodigestive_tract(1)	14		Breast(137;0.00122)		BRCA - Breast invasive adenocarcinoma(366;0.148)		CGCTGGAGCTCCCCCCCGGCT	0.632													11	445	---	---	---	---					
PPM1D	8493	broad.mit.edu	37	17	58740624	58740624	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr17:58740624delA	ENST00000305921.3	+	6	1761	c.1529delA	c.(1528-1530)cafs	p.Q510fs		NM_003620.3	NP_003611.1	O15297	PPM1D_HUMAN	protein phosphatase, Mg2+/Mn2+ dependent, 1D	510					negative regulation of cell proliferation|protein dephosphorylation|response to radiation	nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein binding|protein serine/threonine phosphatase activity	p.N512fs*2(1)		haematopoietic_and_lymphoid_tissue(1)|large_intestine(5)|lung(5)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)	15	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;6.75e-12)|all cancers(12;1.96e-10)			GTCATGGACCAAAAAAATTTG	0.378											OREG0031485	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	7	508	---	---	---	---					
SPPL2B	56928	broad.mit.edu	37	19	2330586	2330587	+	RNA	DEL	GG	GG	-	rs111676128		TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr19:2330586_2330587delGG	ENST00000452401.2	+	0	146				AC005258.3_ENST00000590001.1_RNA			Q8TCT7	PSL1_HUMAN	signal peptide peptidase like 2B							Golgi membrane|integral to membrane	aspartic-type endopeptidase activity						Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAATAATGCTGGAAGGAAGGGT	0.619													3	3	---	---	---	---					
ZNF44	51710	broad.mit.edu	37	19	12384448	12384448	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr19:12384448delA	ENST00000356109.5	-	5	884	c.766delT	c.(766-768)ggfs	p.W256fs	ZNF44_ENST00000355684.5_Frame_Shift_Del_p.W208fs	NM_001164276.1	NP_001157748.1	P15621	ZNF44_HUMAN	zinc finger protein 44	256					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1		Renal(1328;0.157)		GBM - Glioblastoma multiforme(1328;0.0164)|Lung(535;0.179)		AAACTGGGCCAAAAAAAGGCT	0.398													8	685	---	---	---	---					
ZNF90	7643	broad.mit.edu	37	19	20216076	20216076	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr19:20216076delA	ENST00000418063.2	+	3	289	c.177delA	c.(175-177)ggfs	p.G59fs	ZNF90_ENST00000474284.1_3'UTR	NM_007138.1	NP_009069.1	Q03938	ZNF90_HUMAN	zinc finger protein 90	59	KRAB.					Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|lung(2)|ovary(1)|skin(1)	5						TGGAGCAAGGAAAAAAACCCT	0.393													7	812	---	---	---	---					
MAP3K10	4294	broad.mit.edu	37	19	40697941	40697943	+	Translation_Start_Site	DEL	GGA	GGA	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr19:40697941_40697943delGGA	ENST00000253055.3	+	0	291_293					NM_002446.3	NP_002437.2	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase 10						activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			NS(1)|breast(1)|endometrium(4)|kidney(3)|large_intestine(4)|lung(5)|ovary(2)|pancreas(1)|prostate(1)|skin(2)	24						CCTCCCCCATGGAGGAGGAGGAG	0.773													3	6	---	---	---	---					
LIPE-AS1	0	broad.mit.edu	37	19	43136362	43136363	+	RNA	DEL	TG	TG	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr19:43136362_43136363delTG	ENST00000594688.1	+	0	1450				LIPE-AS1_ENST00000594624.2_RNA	NR_073179.1																						TGAGTATGTATGTGTGTGTGTG	0.505													7	112	---	---	---	---					
ZNF548	147694	broad.mit.edu	37	19	57908592	57908592	+	Frame_Shift_Del	DEL	T	T	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr19:57908592delT	ENST00000598895.1	+	3	444	c.228delT	c.(226-228)ccfs	p.P76fs	AC003002.4_ENST00000597658.1_Intron|ZNF548_ENST00000336128.7_Intron|ZNF548_ENST00000597400.1_Intron|AC003002.6_ENST00000596400.1_Intron|ZNF548_ENST00000366197.5_Intron|AC004076.7_ENST00000597410.1_Intron|AC003002.6_ENST00000600421.1_Intron			Q8NEK5	ZN548_HUMAN	zinc finger protein 548	0	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GTGTTACCCCTTTTTACCCAA	0.542													7	1247	---	---	---	---					
ADNP	23394	broad.mit.edu	37	20	49508204	49508204	+	Frame_Shift_Del	DEL	T	T	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr20:49508204delT	ENST00000396029.3	-	5	3614	c.3047delA	c.(3046-3048)agfs	p.K1016fs	ADNP_ENST00000396032.3_Frame_Shift_Del_p.K1016fs|ADNP_ENST00000349014.3_Frame_Shift_Del_p.K1016fs|ADNP_ENST00000371602.4_Frame_Shift_Del_p.K1016fs	NM_015339.2	NP_056154.1	Q9H2P0	ADNP_HUMAN	activity-dependent neuroprotector homeobox	1016						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(1)|breast(4)|endometrium(7)|kidney(1)|large_intestine(13)|lung(7)|ovary(2)|prostate(2)|skin(2)	39						CATGGTAGCCTTTTTTTTGGC	0.458													12	557	---	---	---	---					
LINC00478	0	broad.mit.edu	37	21	17443416	17443417	+	RNA	DEL	TG	TG	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr21:17443416_17443417delTG	ENST00000458468.1	+	0	27					NR_027790.1																						TTTTTCTTTTTGTGTGTGTGTG	0.431													10	580	---	---	---	---					
AP000345.2	0	broad.mit.edu	37	22	23909807	23909808	+	RNA	DEL	AG	AG	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr22:23909807_23909808delAG	ENST00000454863.1	+	0	261				AP000345.2_ENST00000458318.1_RNA																							TAAGAGGGCCagagagagagag	0.609													3	6	---	---	---	---					
TRIOBP	11078	broad.mit.edu	37	22	38120323	38120325	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr22:38120323_38120325delCCT	ENST00000406386.3	+	7	2015_2017	c.1760_1762delCCT	c.(1759-1764)gcc>g	p.AS587del	RP1-37E16.12_ENST00000455236.1_RNA	NM_001039141.2	NP_001034230.1	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein	587					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(1)|lung(3)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	12	Melanoma(58;0.0574)					AATCCCAGAGCCTCCTCTCCCAA	0.596													7	1182	---	---	---	---					
DNAJB7	150353	broad.mit.edu	37	22	41257115	41257115	+	Frame_Shift_Del	DEL	T	T	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chr22:41257115delT	ENST00000307221.4	-	1	1015	c.884delA	c.(883-885)agfs	p.K296fs	XPNPEP3_ENST00000541156.1_Intron|XPNPEP3_ENST00000482652.1_Intron|XPNPEP3_ENST00000357137.4_Intron|XPNPEP3_ENST00000414396.1_Intron	NM_145174.1	NP_660157.1	Q7Z6W7	DNJB7_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 7	296	Poly-Lys.				protein folding		heat shock protein binding|unfolded protein binding			breast(2)|endometrium(2)|large_intestine(1)|lung(3)|ovary(1)|upper_aerodigestive_tract(1)	10						TTTACGCTTCTTTTTTTTCCT	0.378													11	699	---	---	---	---					
TSIX	0	broad.mit.edu	37	X	73046080	73046080	+	RNA	DEL	T	T	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chrX:73046080delT	ENST00000604411.1	+	0	34041				XIST_ENST00000429829.1_lincRNA	NR_003255.2																						AGCCTGGCACTTTTTTTTCCC	0.423													13	867	---	---	---	---					
RNF128	79589	broad.mit.edu	37	X	105937256	105937256	+	Frame_Shift_Del	DEL	T	T	-			TCGA-3A-A9IR-01A-11D-A38G-08	TCGA-3A-A9IR-10A-01D-A38J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2085545-e65e-43e7-a585-547fae15cc10	04752fa2-c71b-40f2-990a-fe04b8f4978d	g.chrX:105937256delT	ENST00000324342.3	+	1	189	c.24delT	c.(22-24)agfs	p.S8fs		NM_024539.3	NP_078815.3	Q8TEB7	RN128_HUMAN	ring finger protein 128, E3 ubiquitin protein ligase	0						endomembrane system|integral to membrane|perinuclear region of cytoplasm	zinc ion binding			central_nervous_system(1)|endometrium(2)|large_intestine(1)|lung(6)|ovary(1)	11						ATAGGTCCAGTTTTTTTTGGC	0.343													7	469	---	---	---	---					
