Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AACSP1	0	genome.wustl.edu	37	5	178201530	178201530	+	RNA	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	5	178201530	178201530	C	T	SNP	AACSP1	ENST00000503486	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AACSP1	HGNC	ENSG00000250420	tier1	-	-	16	0	0.00	14	5	26.32
ABCC3	0	genome.wustl.edu	37	17	48745338	48745338	+	Missense_Mutation	SNP	A	A	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	17	48745338	48745338	A	G	SNP	ABCC3	ENST00000285238	human	ensembl	74_37	+1	known	missense	c.1750	p.M584V	0.893	superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846	tier1	-	-	22	0	0.00	16	15	48.39
ACACA	0	genome.wustl.edu	37	17	35567390	35567390	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	17	35567390	35567390	G	A	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.3698	p.T1233M	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	tier1	-	-	41	0	0.00	27	25	48.08
ADCY1	0	genome.wustl.edu	37	7	45614663	45614664	+	Frame_Shift_Ins	INS	-	-	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	45614663	45614664	-	T	INS	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	frame_shift_ins	c.521_522	p.A175fs	1.000:0.998	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742	tier1			38	0	0.00	57	19	25.00
AGPAT9	0	genome.wustl.edu	37	4	84457661	84457661	+	RNA	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	4	84457661	84457661	G	A	SNP	AGPAT9	ENST00000506766	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.629	-	-	-	no_errors	AGPAT9	HGNC	ENSG00000138678	tier1	-	-	17	0	0.00	4	13	76.47
AHNAK	0	genome.wustl.edu	37	11	62292799	62292799	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	11	62292799	62292799	G	A	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	silent	c.9090	p.F3030	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	tier1	-	-	98	0	0.00	84	27	24.32
AJUBA	0	genome.wustl.edu	37	14	23450545	23450545	+	Nonsense_Mutation	SNP	C	C	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	14	23450545	23450545	C	A	SNP	AJUBA	ENST00000262713	human	ensembl	74_37	-1	known	nonsense	c.931	p.E311*	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	AJUBA	HGNC	ENSG00000129474	tier1	-	-	11	0	0.00	2	14	87.50
AKAP13	0	genome.wustl.edu	37	15	86076844	86076844	+	Missense_Mutation	SNP	C	C	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	15	86076844	86076844	C	A	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	missense	c.211	p.Q71K	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	tier1	-	-	71	0	0.00	42	15	26.32
ALG1	0	genome.wustl.edu	37	16	5129756	5129756	+	Silent	SNP	A	A	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	16	5129756	5129756	A	G	SNP	ALG1	ENST00000262374	human	ensembl	74_37	+1	known	silent	c.909	p.E303	0.355	pfam_Glyco_trans_1	pfam_Glyco_trans_1	-	no_errors	ALG1	HGNC	ENSG00000033011				47	0	0.00	56	6	9.38
ALPK2	0	genome.wustl.edu	37	18	56247529	56247529	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	18	56247529	56247529	G	A	SNP	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	missense	c.479	p.S160L	0.001	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796	tier1	-	-	106	0	0.00	81	39	32.50
ANO5	0	genome.wustl.edu	37	11	22294478	22294478	+	Silent	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	11	22294478	22294478	C	T	SNP	ANO5	ENST00000324559	human	ensembl	74_37	+1	known	silent	c.2178	p.S726	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714	tier1	-	-	48	0	0.00	41	13	24.07
ARID4A	0	genome.wustl.edu	37	14	58831580	58831580	+	Silent	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	14	58831580	58831580	C	T	SNP	ARID4A	ENST00000355431	human	ensembl	74_37	+1	known	silent	c.2773	p.L925	0.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219	tier1	-	-	22	0	0.00	3	15	83.33
ARL5A	0	genome.wustl.edu	37	2	152684695	152684695	+	RNA	SNP	G	G	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	2	152684695	152684695	G	C	SNP	ARL5A	ENST00000487723	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	ARL5A	HGNC	ENSG00000162980	tier1	-	-	23	0	0.00	38	32	45.71
BNIP2	0	genome.wustl.edu	37	15	59956127	59956127	+	RNA	SNP	T	T	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	15	59956127	59956127	T	C	SNP	BNIP2	ENST00000478981	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	BNIP2	HGNC	ENSG00000140299	tier1	-	-	24	0	0.00	13	14	51.85
BRAF	0	genome.wustl.edu	37	7	140501216	140501216	+	Missense_Mutation	SNP	G	G	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	140501216	140501216	G	C	SNP	BRAF	ENST00000288602	human	ensembl	74_37	-1	known	missense	c.856	p.L286V	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764	tier1	-	-	27	0	0.00	23	17	42.50
BTN1A1	0	genome.wustl.edu	37	6	26505212	26505212	+	Nonsense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	6	26505212	26505212	G	T	SNP	BTN1A1	ENST00000244513	human	ensembl	74_37	+1	known	nonsense	c.487	p.E163*	0.980	pfam_CD80_C2-set,pfscan_Ig-like_dom	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTN1A1	HGNC	ENSG00000124557				25	0	0.00	20	2	9.09
C2CD3	0	genome.wustl.edu	37	11	73796763	73796763	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	11	73796763	73796763	G	T	SNP	C2CD3	ENST00000334126	human	ensembl	74_37	-1	known	missense	c.3810	p.N1270K	0.946	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	C2CD3	HGNC	ENSG00000168014				23	0	0.00	31	4	11.11
CAD	0	genome.wustl.edu	37	2	27456369	27456369	+	Missense_Mutation	SNP	A	A	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	2	27456369	27456369	A	T	SNP	CAD	ENST00000264705	human	ensembl	74_37	+1	known	missense	c.3181	p.S1061C	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf	-	no_errors	CAD	HGNC	ENSG00000084774	tier1	-	-	25	0	0.00	31	10	24.39
CALCB	0	genome.wustl.edu	37	11	15096326	15096326	+	Missense_Mutation	SNP	G	G	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	11	15096326	15096326	G	C	SNP	CALCB	ENST00000324229	human	ensembl	74_37	+1	known	missense	c.62	p.G21A	1.000	pfam_Procalcitonin/adrenomedullin	pfam_Procalcitonin/adrenomedullin,smart_Calcitonin_peptide-like,prints_Calcitonin_gene-rel_peptide,prints_Pro-islet_amyloid_polypep	-	no_errors	CALCB	HGNC	ENSG00000175868	tier1	-	-	37	0	0.00	29	15	34.09
CATSPER2	0	genome.wustl.edu	37	15	43931876	43931876	+	Nonsense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	15	43931876	43931876	G	A	SNP	CATSPER2	ENST00000321596	human	ensembl	74_37	-1	known	nonsense	c.682	p.Q228*	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762	tier1	-	-	41	0	0.00	29	9	23.68
CCDC155	0	genome.wustl.edu	37	19	49910924	49910924	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	19	49910924	49910924	C	T	SNP	CCDC155	ENST00000447857	human	ensembl	74_37	+1	known	missense	c.989	p.T330M	0.282	NULL	NULL	-	no_errors	CCDC155	HGNC	ENSG00000161609	tier1	-	-	29	0	0.00	35	12	25.53
CCT6P3	0	genome.wustl.edu	37	7	64530858	64530858	+	RNA	SNP	T	T	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	64530858	64530858	T	C	SNP	CCT6P3	ENST00000426828	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CCT6P3	HGNC	ENSG00000234585	tier1	-	-	59	0	0.00	61	44	41.90
CDC73	0	genome.wustl.edu	37	1	193107230	193107230	+	Missense_Mutation	SNP	C	C	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	193107230	193107230	C	A	SNP	CDC73	ENST00000367435	human	ensembl	74_37	+1	known	missense	c.439	p.R147S	1.000	NULL	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371				21	0	0.00	33	2	5.71
CEACAM18	0	genome.wustl.edu	37	19	51981881	51981881	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	19	51981881	51981881	G	A	SNP	CEACAM18	ENST00000451626	human	ensembl	74_37	+1	known	silent	c.168	p.E56	0.002	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM18	HGNC	ENSG00000213822	tier1	-	-	30	0	0.00	24	26	52.00
CELF2	0	genome.wustl.edu	37	10	11299729	11299729	+	Silent	SNP	A	A	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	10	11299729	11299729	A	C	SNP	CELF2	ENST00000450189	human	ensembl	74_37	+1	known	silent	c.432	p.G144	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	CELF2	HGNC	ENSG00000048740	tier1	-	-	45	0	0.00	32	17	34.69
CELSR3	0	genome.wustl.edu	37	3	48684260	48684260	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	48684260	48684260	G	T	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.7246	p.L2416I	0.993	pfam_DUF3497	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				23	0	0.00	38	2	5.00
CHD7	0	genome.wustl.edu	37	8	61765096	61765096	+	Silent	SNP	A	A	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	8	61765096	61765096	A	T	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	silent	c.5934	p.V1978	0.074	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	tier1	-	-	21	0	0.00	15	19	54.29
CHDC2	0	genome.wustl.edu	37	X	36117945	36117945	+	Missense_Mutation	SNP	T	T	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	X	36117945	36117945	T	G	SNP	CHDC2	ENST00000313548	human	ensembl	74_37	+1	known	missense	c.801	p.F267L	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain	-	no_errors	CHDC2	HGNC	ENSG00000176034	tier1	-	-	23	0	0.00	3	21	87.50
CHRM2	0	genome.wustl.edu	37	7	136700063	136700063	+	Missense_Mutation	SNP	T	T	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	136700063	136700063	T	A	SNP	CHRM2	ENST00000320658	human	ensembl	74_37	+1	known	missense	c.451	p.S151T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072	tier1	-	-	20	0	0.00	22	7	24.14
CIITA	0	genome.wustl.edu	37	16	11001871	11001871	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	16	11001871	11001871	C	T	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	missense	c.2522	p.T841M	0.109	prints_MHC_II_transact	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583	tier1	-	-	41	0	0.00	51	15	22.73
CNTNAP5	0	genome.wustl.edu	37	2	124999946	124999946	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	2	124999946	124999946	G	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.357	p.Q119H	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052	tier1	-	-	28	0	0.00	54	4	6.90
CSMD3	0	genome.wustl.edu	37	8	113277651	113277651	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	8	113277651	113277651	G	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.9677	p.P3226Q	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				23	0	0.00	73	4	5.19
CSPG4	0	genome.wustl.edu	37	15	75981216	75981216	+	Silent	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	15	75981216	75981216	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	silent	c.2190	p.A730	0.378	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	tier1	-	-	46	0	0.00	81	6	6.90
CYP2C9	0	genome.wustl.edu	37	10	96702021	96702021	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	10	96702021	96702021	G	T	SNP	CYP2C9	ENST00000260682	human	ensembl	74_37	+1	known	missense	c.404	p.G135V	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C9	HGNC	ENSG00000138109	tier1	-	-	84	0	0.00	70	20	22.22
DCAF12	0	genome.wustl.edu	37	9	34093300	34093300	+	Silent	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	9	34093300	34093300	G	T	SNP	DCAF12	ENST00000361264	human	ensembl	74_37	-1	known	silent	c.1008	p.S336	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12	HGNC	ENSG00000198876	tier1	-	-	57	0	0.00	50	19	27.54
DCAF12	0	genome.wustl.edu	37	9	34093301	34093301	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	9	34093301	34093301	G	A	SNP	DCAF12	ENST00000361264	human	ensembl	74_37	-1	known	missense	c.1007	p.S336F	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12	HGNC	ENSG00000198876	tier1	-	-	58	0	0.00	50	19	27.54
DCAF4L2	0	genome.wustl.edu	37	8	88885726	88885726	+	Silent	SNP	C	C	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	8	88885726	88885726	C	G	SNP	DCAF4L2	ENST00000319675	human	ensembl	74_37	-1	known	silent	c.474	p.L158	0.913	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	tier1	-	-	28	0	0.00	25	20	44.44
DGKI	0	genome.wustl.edu	37	7	137374664	137374664	+	Silent	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	137374664	137374664	C	T	SNP	DGKI	ENST00000288490	human	ensembl	74_37	-1	known	silent	c.486	p.E162	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680	tier1	-	-	12	0	0.00	26	6	18.75
DMRT2	0	genome.wustl.edu	37	9	1056731	1056731	+	Missense_Mutation	SNP	C	C	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	9	1056731	1056731	C	G	SNP	DMRT2	ENST00000302441	human	ensembl	74_37	+1	known	missense	c.1144	p.R382G	0.193	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT2	HGNC	ENSG00000173253	tier1	-	-	27	0	0.00	33	15	31.25
DRD2	0	genome.wustl.edu	37	11	113283425	113283425	+	Missense_Mutation	SNP	C	C	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	11	113283425	113283425	C	G	SNP	DRD2	ENST00000355319	human	ensembl	74_37	-1	known	missense	c.997	p.A333P	0.970	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D2_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D2_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD2	HGNC	ENSG00000149295	tier1	-	-	110	0	0.00	123	49	28.49
DVL1	0	genome.wustl.edu	37	1	1275451	1275451	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	1275451	1275451	G	A	SNP	DVL1	ENST00000378888	human	ensembl	74_37	-1	known	silent	c.876	p.D292	0.581	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam	-	no_errors	DVL1	HGNC	ENSG00000107404	tier1	-	-	17	0	0.00	14	13	48.15
ENSG00000173213	0	genome.wustl.edu	37	18	49944	49945	+	RNA	INS	-	-	ATGAC			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	18	49944	49945	0	ATGAC	INS	ENSG00000173213	ENST00000575325	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.031:0.027	-	-	-	no_errors	RP11-683L23.1	Clone_based_vega_gene	ENSG00000173213				10	0	0.00	11	5	31.25
ENSG00000229180	0	genome.wustl.edu	37	7	66006407	66006407	+	RNA	SNP	T	T	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	66006407	66006407	T	A	SNP	ENSG00000229180	ENST00000449307	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.122	-	-	-	no_errors	GS1-124K5.11	Clone_based_vega_gene	ENSG00000229180	tier1	-	-	33	0	0.00	37	34	47.89
ENSG00000233368	0	genome.wustl.edu	37	1	149576754	149576754	+	RNA	SNP	T	T	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	149576754	149576754	T	A	SNP	ENSG00000233368	ENST00000447883	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.028	-	-	-	no_errors	RP11-277L2.3	Clone_based_vega_gene	ENSG00000233368	tier1	-	-	52	0	0.00	44	67	60.36
ENSG00000259198	0	genome.wustl.edu	37	15	40605342	40605342	+	RNA	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	15	40605342	40605342	G	A	SNP	ENSG00000259198	ENST00000559030	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RP11-133K1.6	Clone_based_vega_gene	ENSG00000259198	tier1	-	-	21	0	0.00	11	13	54.17
EPHA10	0	genome.wustl.edu	37	1	38185713	38185713	+	Silent	SNP	C	C	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	38185713	38185713	C	A	SNP	EPHA10	ENST00000427468	human	ensembl	74_37	-1	known	silent	c.2430	p.A810	0.331	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317	tier1	-	-	27	0	0.00	18	6	25.00
EPM2AIP1	0	genome.wustl.edu	37	3	37033713	37033713	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	37033713	37033713	G	A	SNP	EPM2AIP1	ENST00000322716	human	ensembl	74_37	-1	known	silent	c.856	p.L286	0.592	NULL	NULL	-	no_errors	EPM2AIP1	HGNC	ENSG00000178567	tier1	-	-	25	0	0.00	9	3	25.00
EPPIN-WFDC6	0	genome.wustl.edu	37	20	44174309	44174309	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	20	44174309	44174309	G	T	SNP	EPPIN-WFDC6	ENST00000504988	human	ensembl	74_37	-1	known	missense	c.192	p.S64R	1.000	pfam_WAP-type_4-diS_core,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core	pfam_Prot_inh_Kunz-m,pfam_WAP-type_4-diS_core,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	EPPIN-WFDC6	HGNC	ENSG00000249139	tier1	-	-	55	0	0.00	62	4	6.06
ESPNL	0	genome.wustl.edu	37	2	239040155	239040155	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	2	239040155	239040155	G	A	SNP	ESPNL	ENST00000343063	human	ensembl	74_37	+1	known	missense	c.2800	p.A934T	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ESPNL	HGNC	ENSG00000144488	tier1	-	-	11	0	0.00	8	5	38.46
ETV3	0	genome.wustl.edu	37	1	157094737	157094737	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	157094737	157094737	G	A	SNP	ETV3	ENST00000368192	human	ensembl	74_37	-1	known	missense	c.1435	p.R479C	1.000	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV3	HGNC	ENSG00000117036	tier1	-	-	28	0	0.00	40	9	18.37
FAM135B	0	genome.wustl.edu	37	8	139209800	139209800	+	Missense_Mutation	SNP	A	A	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	8	139209800	139209800	A	T	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	missense	c.782	p.V261E	0.070	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	tier1	-	-	24	0	0.00	22	10	31.25
FAM135B	0	genome.wustl.edu	37	8	139268978	139268978	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	8	139268978	139268978	C	T	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	missense	c.322	p.D108N	1.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	tier1	-	-	18	0	0.00	13	15	53.57
FAM182B	0	genome.wustl.edu	37	20	25755562	25755562	+	Missense_Mutation	SNP	A	A	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	20	25755562	25755562	A	C	SNP	FAM182B	ENST00000376403	human	ensembl	74_37	-1	putative	missense	c.394	p.W132G	0.150	NULL	NULL	-	no_errors	FAM182B	HGNC	ENSG00000175170				48	0	0.00	95	7	6.80
FAM208A	0	genome.wustl.edu	37	3	56703746	56703746	+	Silent	SNP	A	A	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	56703746	56703746	A	C	SNP	FAM208A	ENST00000355628	human	ensembl	74_37	-1	known	silent	c.717	p.V239	1.000	pfam_DUF3715	pfam_DUF3715	-	no_errors	FAM208A	HGNC	ENSG00000163946				31	0	0.00	21	3	12.50
FAM71F1	0	genome.wustl.edu	37	7	128370053	128370053	+	Silent	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	128370053	128370053	C	T	SNP	FAM71F1	ENST00000315184	human	ensembl	74_37	+1	known	silent	c.951	p.S317	0.422	NULL	pfam_DUF3699	-	no_errors	FAM71F1	HGNC	ENSG00000135248	tier1	-	-	18	0	0.00	38	28	42.42
FBXL22	0	genome.wustl.edu	37	15	63889686	63889686	+	Missense_Mutation	SNP	T	T	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	15	63889686	63889686	T	C	SNP	FBXL22	ENST00000360587	human	ensembl	74_37	+1	known	missense	c.95	p.L32P	0.998	superfamily_F-box_dom	superfamily_F-box_dom	-	no_errors	FBXL22	HGNC	ENSG00000197361	tier1	-	-	29	0	0.00	17	15	46.88
FGF12	0	genome.wustl.edu	37	3	192445098	192445098	+	RNA	SNP	T	T	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	192445098	192445098	T	G	SNP	FGF12	ENST00000466144	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	FGF12	HGNC	ENSG00000114279	tier1	-	-	29	0	0.00	34	22	39.29
FLCN	0	genome.wustl.edu	37	17	17122347	17122347	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	17	17122347	17122347	G	A	SNP	FLCN	ENST00000285071	human	ensembl	74_37	-1	known	missense	c.1048	p.R350W	0.988	NULL	pfam_Folliculin	-	no_errors	FLCN	HGNC	ENSG00000154803	tier1	-	-	34	0	0.00	67	23	25.56
FLG	0	genome.wustl.edu	37	1	152283351	152283351	+	Silent	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	152283351	152283351	G	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.4011	p.S1337	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	tier1	-	-	121	0	0.00	246	59	19.34
FLI1	0	genome.wustl.edu	37	11	128651913	128651913	+	Missense_Mutation	SNP	A	A	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	11	128651913	128651913	A	C	SNP	FLI1	ENST00000527786	human	ensembl	74_37	+1	known	missense	c.650	p.K217T	1.000	NULL	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	FLI1	HGNC	ENSG00000151702	tier1	-	-	53	0	0.00	45	8	15.09
FLNA	0	genome.wustl.edu	37	X	153590885	153590885	+	Silent	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	X	153590885	153590885	G	T	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	silent	c.2466	p.I822	0.155	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	tier1	-	-	42	0	0.00	59	43	42.16
FNDC3A	0	genome.wustl.edu	37	13	49762729	49762729	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	13	49762729	49762729	G	A	SNP	FNDC3A	ENST00000492622	human	ensembl	74_37	+1	known	missense	c.1904	p.R635H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531	tier1	-	-	61	0	0.00	38	45	54.22
FSIP2	0	genome.wustl.edu	37	2	186604132	186604132	+	Silent	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	2	186604132	186604132	C	T	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	silent	c.426	p.L142	0.883	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	tier1	-	-	27	0	0.00	26	4	13.33
GBP2	0	genome.wustl.edu	37	1	89585810	89585810	+	RNA	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	89585810	89585810	G	T	SNP	GBP2	ENST00000463660	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GBP2	HGNC	ENSG00000162645	tier1	-	-	45	0	0.00	28	14	33.33
GIF	0	genome.wustl.edu	37	11	59612870	59612870	+	Missense_Mutation	SNP	A	A	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	11	59612870	59612870	A	T	SNP	GIF	ENST00000257248	human	ensembl	74_37	-1	known	missense	c.57	p.S19R	0.000	pfam_Cbl-bd_transpt_euk	pfam_Cbl-bd_transpt_euk	-	no_errors	GIF	HGNC	ENSG00000134812	tier1	-	-	25	0	0.00	22	7	23.33
H2AFY	0	genome.wustl.edu	37	5	134705831	134705831	+	Silent	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	5	134705831	134705831	C	T	SNP	H2AFY	ENST00000511689	human	ensembl	74_37	-1	known	silent	c.174	p.A58	0.988	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,pirsf_Core_histone_macro-H2A,prints_Histone_H2A	pfam_Macro_dom,pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,smart_Macro_dom,pirsf_Core_histone_macro-H2A,prints_Histone_H2A,pfscan_Macro_dom	-	no_errors	H2AFY	HGNC	ENSG00000113648	tier1	rs141756450	-	30	0	0.00	20	13	39.39
HLA-DQB2	0	genome.wustl.edu	37	6	32725642	32725642	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	6	32725642	32725642	G	A	SNP	HLA-DQB2	ENST00000435145	human	ensembl	74_37	-1	known	missense	c.665	p.A222V	1.000	NULL	pfam_MHC_II_b_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DQB2	HGNC	ENSG00000232629	tier1	-	-	35	0	0.00	31	26	45.61
HOXB5	0	genome.wustl.edu	37	17	46670668	46670668	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	17	46670668	46670668	G	A	SNP	HOXB5	ENST00000239151	human	ensembl	74_37	-1	known	missense	c.377	p.S126F	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB5	HGNC	ENSG00000120075	tier1	-	-	64	0	0.00	73	45	38.14
HUWE1	0	genome.wustl.edu	37	X	53641613	53641613	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	X	53641613	53641613	G	T	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.2143	p.P715T	1.000	pfam_E3_Ub_ligase_DUF913	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	tier1	-	-	23	0	0.00	21	5	19.23
IFT122	0	genome.wustl.edu	37	3	129195555	129195555	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	129195555	129195555	G	T	SNP	IFT122	ENST00000296266	human	ensembl	74_37	+1	known	missense	c.1211	p.S404I	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913	tier1	-	-	26	0	0.00	31	6	16.22
JAG2	0	genome.wustl.edu	37	14	105609908	105609908	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	14	105609908	105609908	G	A	SNP	JAG2	ENST00000331782	human	ensembl	74_37	-1	known	missense	c.3152	p.A1051V	0.372	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	JAG2	HGNC	ENSG00000184916	tier1	-	-	42	0	0.00	32	16	33.33
KDR	0	genome.wustl.edu	37	4	55981097	55981097	+	Missense_Mutation	SNP	T	T	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	4	55981097	55981097	T	A	SNP	KDR	ENST00000263923	human	ensembl	74_37	-1	known	missense	c.602	p.E201V	1.000	smart_Ig_sub	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR2_rcpt	-	no_errors	KDR	HGNC	ENSG00000128052	tier1	-	-	22	0	0.00	8	5	38.46
KIAA1324L	0	genome.wustl.edu	37	7	86556124	86556124	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	86556124	86556124	G	T	SNP	KIAA1324L	ENST00000450689	human	ensembl	74_37	-1	known	missense	c.1198	p.P400T	1.000	superfamily_Growth_fac_rcpt_N_dom	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	KIAA1324L	HGNC	ENSG00000164659	tier1	-	-	27	0	0.00	37	29	43.94
KIAA1549	0	genome.wustl.edu	37	7	138552846	138552846	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	138552846	138552846	G	A	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.4804	p.R1602C	0.996	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	tier1	-	-	29	0	0.00	44	16	26.67
KMT2C	0	genome.wustl.edu	37	7	151878713	151878713	+	Missense_Mutation	SNP	T	T	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	151878713	151878713	T	C	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.6232	p.T2078A	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609	tier1	-	-	29	0	0.00	48	10	17.24
KRT8	0	genome.wustl.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	12	53298675	53298675	A	C	SNP	KRT8	ENST00000293308	human	ensembl	74_37	-1	known	missense	c.91	p.S31A	0.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421				28	0	0.00	30	4	11.76
LAMP2	0	genome.wustl.edu	37	X	119589255	119589255	+	Nonsense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	X	119589255	119589255	G	T	SNP	LAMP2	ENST00000434600	human	ensembl	74_37	-1	known	nonsense	c.354	p.Y118*	0.984	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP2	HGNC	ENSG00000005893	tier1	-	-	42	0	0.00	39	4	9.30
LOC101927256	0	genome.wustl.edu	37	7	2983806	2983806	+	RNA	SNP	C	C	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	2983806	2983806	C	A	SNP	LOC101927256	ENST00000423194	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	AC004906.3	Clone_based_vega_gene	ENSG00000237286	tier1	-	-	20	0	0.00	18	4	18.18
LOC441666	0	genome.wustl.edu	37	10	42832981	42832981	+	RNA	SNP	G	G	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	10	42832981	42832981	G	C	SNP	LOC441666	ENST00000609841	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.276	-	-	-	no_errors	RP11-313J2.1	Clone_based_vega_gene	ENSG00000215146	tier1	-	-	43	0	0.00	21	22	51.16
LRP12	0	genome.wustl.edu	37	8	105509215	105509215	+	Missense_Mutation	SNP	C	C	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	8	105509215	105509215	C	G	SNP	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	missense	c.1508	p.R503T	1.000	NULL	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650	tier1	-	-	24	0	0.00	30	27	47.37
LRRC23	0	genome.wustl.edu	37	12	7016543	7016543	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	12	7016543	7016543	G	A	SNP	LRRC23	ENST00000007969	human	ensembl	74_37	+1	known	silent	c.555	p.E185	1.000	NULL	pfam_Leu-rich_rpt	-	no_errors	LRRC23	HGNC	ENSG00000010626	tier1	-	-	30	0	0.00	66	18	21.43
MAMDC4	0	genome.wustl.edu	37	9	139749014	139749017	+	Frame_Shift_Del	DEL	GAGA	GAGA	-			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	GAGA	GAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	9	139749014	139749017	GAGA	-	DEL	MAMDC4	ENST00000445819	human	ensembl	74_37	+1	known	frame_shift_del	c.820_823	p.E274fs	0.967:0.954:0.901:0.177	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	MAMDC4	HGNC	ENSG00000177943	tier1			18	0	0.00	12	5	29.41
MAML2	0	genome.wustl.edu	37	11	96074769	96074769	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	11	96074769	96074769	G	A	SNP	MAML2	ENST00000524717	human	ensembl	74_37	-1	known	silent	c.291	p.A97	0.010	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	tier1	-	-	31	0	0.00	22	29	56.86
MAP1B	0	genome.wustl.edu	37	5	71493714	71493714	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	5	71493714	71493714	G	T	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	missense	c.4532	p.G1511V	0.992	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	tier1	-	-	31	0	0.00	33	4	10.81
MBTPS2	0	genome.wustl.edu	37	X	21896254	21896254	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	X	21896254	21896254	G	T	SNP	MBTPS2	ENST00000379484	human	ensembl	74_37	+1	known	missense	c.1065	p.L355F	1.000	pfam_Peptidase_M50	pfam_Peptidase_M50,superfamily_PDZ,prints_MBTPS2	-	no_errors	MBTPS2	HGNC	ENSG00000012174	tier1	-	-	28	0	0.00	33	4	10.81
MCF2L2	0	genome.wustl.edu	37	3	182948802	182948802	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	182948802	182948802	G	A	SNP	MCF2L2	ENST00000328913	human	ensembl	74_37	-1	known	silent	c.1866	p.R622	0.031	superfamily_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524	tier1	-	-	20	0	0.00	30	6	16.67
MEP1A	0	genome.wustl.edu	37	6	46787380	46787380	+	Silent	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	6	46787380	46787380	C	T	SNP	MEP1A	ENST00000230588	human	ensembl	74_37	+1	known	silent	c.495	p.H165	0.948	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,smart_Peptidase_Metallo,prints_Peptidase_M12A	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EG-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl_sf,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818	tier1	-	-	49	0	0.00	14	62	81.58
METTL11B	0	genome.wustl.edu	37	1	170136782	170136782	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	170136782	170136782	C	T	SNP	METTL11B	ENST00000439373	human	ensembl	74_37	+1	known	missense	c.736	p.R246W	0.237	pfam_DUF858_MeTrfase_lik,pirsf_DUF858_MeTrfase_lik	pfam_DUF858_MeTrfase_lik,pfam_Methyltransf_11,pirsf_DUF858_MeTrfase_lik	-	no_errors	METTL11B	HGNC	ENSG00000203740	tier1	-	-	42	0	0.00	56	11	16.42
MIR3672	0	genome.wustl.edu	37	X	120504889	120504889	+	RNA	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	X	120504889	120504889	C	T	SNP	MIR3672	ENST00000584290	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	MIR3672	HGNC	ENSG00000265456	tier1	-	-	8	0	0.00	7	4	36.36
MLXIPL	0	genome.wustl.edu	37	7	73013902	73013902	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	73013902	73013902	G	A	SNP	MLXIPL	ENST00000313375	human	ensembl	74_37	-1	known	missense	c.1025	p.P342L	0.002	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLXIPL	HGNC	ENSG00000009950	tier1	-	-	20	0	0.00	32	20	37.74
MLXIPL	0	genome.wustl.edu	37	7	73013937	73013937	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	73013937	73013937	G	A	SNP	MLXIPL	ENST00000313375	human	ensembl	74_37	-1	known	silent	c.990	p.L330	0.661	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLXIPL	HGNC	ENSG00000009950				19	0	0.00	16	23	57.50
MPPED2	0	genome.wustl.edu	37	11	30439152	30439152	+	Missense_Mutation	SNP	T	T	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	11	30439152	30439152	T	C	SNP	MPPED2	ENST00000358117	human	ensembl	74_37	-1	known	missense	c.565	p.N189D	1.000	pfam_PEstase_dom	pfam_PEstase_dom	-	no_errors	MPPED2	HGNC	ENSG00000066382	tier1	-	-	26	0	0.00	18	6	25.00
MSH6	0	genome.wustl.edu	37	2	48033609	48033609	+	Missense_Mutation	SNP	G	G	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	2	48033609	48033609	G	C	SNP	MSH6	ENST00000234420	human	ensembl	74_37	+1	known	missense	c.3820	p.E1274Q	1.000	pfam_DNA_mismatch_repair_MutS_C,superfamily_P-loop_NTPase,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP_dom,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_PWWP_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	-	no_errors	MSH6	HGNC	ENSG00000116062	tier1	-	-	28	0	0.00	9	14	60.87
MTG1	0	genome.wustl.edu	37	10	135212714	135212714	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	10	135212714	135212714	G	T	SNP	MTG1	ENST00000317502	human	ensembl	74_37	+1	known	missense	c.404	p.R135L	1.000	superfamily_P-loop_NTPase,pirsf_GTPase_MTG1,tigrfam_GTP-bd_ribosome_bgen_YlqF	pfam_GTP_binding_domain,superfamily_P-loop_NTPase,pirsf_GTPase_MTG1,tigrfam_GTP-bd_ribosome_bgen_YlqF	-	no_errors	MTG1	HGNC	ENSG00000148824				42	0	0.00	53	3	5.36
MUC4	0	genome.wustl.edu	37	3	195510962	195510962	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	195510962	195510962	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.7489	p.L2497F	0.001	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	377	0	0.00	562	78	12.15
MUC4	0	genome.wustl.edu	37	3	195510227	195510228	+	Frame_Shift_Ins	INS	-	-	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	195510227	195510228	0	G	INS	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	frame_shift_ins	c.8224_8223	p.T2741fs	0.000:0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				67	0	0.00	97	10	9.35
MYH11	0	genome.wustl.edu	37	16	15835388	15835388	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	16	15835388	15835388	G	A	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	silent	c.2812	p.L938	0.997	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392	tier1	-	-	26	0	0.00	14	23	62.16
MYLK	0	genome.wustl.edu	37	3	123368043	123368044	+	Splice_Site	INS	-	-	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	123368043	123368044	-	G	INS	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	splice_site_ins	c.4289-3_4289-2	e22-2	0.975:0.100	-	-	-	no_errors	MYLK	HGNC	ENSG00000065534	tier1			12	0	0.00	18	6	25.00
MYO3A	0	genome.wustl.edu	37	10	26417469	26417469	+	Splice_Site	SNP	T	T	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	10	26417469	26417469	T	A	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	splice_site	c.2262+2	e18+2	1.000	-	-	-	no_errors	MYO3A	HGNC	ENSG00000095777	tier1	-	-	26	0	0.00	2	32	94.12
NDUFA10	0	genome.wustl.edu	37	2	240954203	240954203	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	2	240954203	240954203	C	T	SNP	NDUFA10	ENST00000252711	human	ensembl	74_37	-1	known	missense	c.622	p.D208N	0.997	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase,pirsf_NADH_UbQ_OxRdtase_42KD_su	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase,pirsf_NADH_UbQ_OxRdtase_42KD_su	-	no_errors	NDUFA10	HGNC	ENSG00000130414				14	0	0.00	23	2	8.00
NEDD4L	0	genome.wustl.edu	37	18	55996356	55996356	+	Silent	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	18	55996356	55996356	C	T	SNP	NEDD4L	ENST00000400345	human	ensembl	74_37	+1	known	silent	c.810	p.P270	0.066	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759	tier1	-	-	10	0	0.00	5	5	50.00
NFE2L2	0	genome.wustl.edu	37	2	178098909	178098909	+	Missense_Mutation	SNP	A	A	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	2	178098909	178098909	A	G	SNP	NFE2L2	ENST00000397062	human	ensembl	74_37	-1	known	missense	c.136	p.Y46H	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,superfamily_Serpin_dom,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L2	HGNC	ENSG00000116044				66	0	0.00	47	13	21.67
NFE2L2	0	genome.wustl.edu	37	2	178098912	178098912	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	2	178098912	178098912	C	T	SNP	NFE2L2	ENST00000397062	human	ensembl	74_37	-1	known	missense	c.133	p.E45K	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,superfamily_Serpin_dom,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L2	HGNC	ENSG00000116044				65	0	0.00	47	4	7.84
NINL	0	genome.wustl.edu	37	20	25462723	25462723	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	20	25462723	25462723	C	T	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	missense	c.1691	p.R564H	0.007	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004	tier1	-	-	48	0	0.00	82	26	24.07
NPBWR2	0	genome.wustl.edu	37	20	62737818	62737818	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	20	62737818	62737818	C	T	SNP	NPBWR2	ENST00000369768	human	ensembl	74_37	-1	known	missense	c.367	p.V123I	0.164	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt	-	no_errors	NPBWR2	HGNC	ENSG00000125522	tier1	-	-	38	0	0.00	37	19	33.93
NRROS	0	genome.wustl.edu	37	3	196387351	196387351	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	196387351	196387351	G	A	SNP	NRROS	ENST00000328557	human	ensembl	74_37	+1	known	silent	c.837	p.L279	0.024	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	NRROS	HGNC	ENSG00000174004	tier1	-	-	37	0	0.00	23	28	54.90
NUDT10	0	genome.wustl.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	X	51076024	51076024	G	A	SNP	NUDT10	ENST00000356450	human	ensembl	74_37	+1	known	silent	c.207	p.E69	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT10	HGNC	ENSG00000122824				30	0	0.00	32	4	11.11
OR14K1	0	genome.wustl.edu	37	1	247902646	247902646	+	Missense_Mutation	SNP	A	A	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	247902646	247902646	A	G	SNP	OR14K1	ENST00000283225	human	ensembl	74_37	+1	known	missense	c.730	p.I244V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14K1	HGNC	ENSG00000153230	tier1	-	-	40	0	0.00	47	8	14.55
OR2C3	0	genome.wustl.edu	37	1	247695347	247695347	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	247695347	247695347	G	T	SNP	OR2C3	ENST00000366487	human	ensembl	74_37	-1	known	missense	c.467	p.T156N	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2C3	HGNC	ENSG00000196242				25	0	0.00	29	2	6.45
OR52N5	0	genome.wustl.edu	37	11	5799447	5799447	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	11	5799447	5799447	G	A	SNP	OR52N5	ENST00000317093	human	ensembl	74_37	-1	known	missense	c.418	p.R140C	0.861	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR52N5	HGNC	ENSG00000181009	tier1	-	-	25	0	0.00	16	8	33.33
OR5H6	0	genome.wustl.edu	37	3	97983602	97983602	+	Silent	SNP	T	T	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	97983602	97983602	T	C	SNP	OR5H6	ENST00000383696	human	ensembl	74_37	+1	known	silent	c.474	p.I158	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H6	HGNC	ENSG00000230301	tier1	rs75354046	-	57	0	0.00	73	7	8.64
OR8D4	0	genome.wustl.edu	37	11	123777707	123777707	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	11	123777707	123777707	C	T	SNP	OR8D4	ENST00000321355	human	ensembl	74_37	+1	known	missense	c.569	p.S190F	0.006	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D4	HGNC	ENSG00000181518				38	0	0.00	24	3	11.11
OR9A4	0	genome.wustl.edu	37	7	141619217	141619217	+	Missense_Mutation	SNP	G	G	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	141619217	141619217	G	C	SNP	OR9A4	ENST00000548136	human	ensembl	74_37	+1	known	missense	c.542	p.R181P	0.995	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9A4	HGNC	ENSG00000258083	tier1	-	-	27	0	0.00	34	5	12.82
PDCD4	0	genome.wustl.edu	37	10	112650500	112650500	+	RNA	SNP	C	C	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	10	112650500	112650500	C	G	SNP	PDCD4	ENST00000489049	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDCD4	HGNC	ENSG00000150593	tier1	-	-	25	0	0.00	11	42	79.25
PENK	0	genome.wustl.edu	37	8	57358329	57358329	+	Missense_Mutation	SNP	A	A	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	8	57358329	57358329	A	G	SNP	PENK	ENST00000518770	human	ensembl	74_37	-1	putative	missense	c.184	p.F62L	0.001	NULL	pfam_Opioid_neupept,prints_Proenkphlin_A	-	no_errors	PENK	HGNC	ENSG00000181195	tier1	-	-	34	0	0.00	69	26	27.37
PFAS	0	genome.wustl.edu	37	17	8160282	8160282	+	Splice_Site	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	17	8160282	8160282	G	T	SNP	PFAS	ENST00000314666	human	ensembl	74_37	+1	known	splice_site	c.1075+1	e8+1	1.000	-	-	-	no_errors	PFAS	HGNC	ENSG00000178921				22	0	0.00	50	4	7.41
PI4K2B	0	genome.wustl.edu	37	4	25262150	25262150	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	4	25262150	25262150	G	T	SNP	PI4K2B	ENST00000264864	human	ensembl	74_37	+1	known	missense	c.915	p.R305S	0.998	pfam_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2B	HGNC	ENSG00000038210				25	0	0.00	35	2	5.41
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	tier1	rs121913279	-	19	0	0.00	10	12	54.55
PRDX1	0	genome.wustl.edu	37	1	45980307	45980307	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	45980307	45980307	C	T	SNP	PRDX1	ENST00000262746	human	ensembl	74_37	-1	known	missense	c.386	p.G129D	1.000	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX1	HGNC	ENSG00000117450	tier1	-	-	19	0	0.00	11	8	42.11
PRKCSH	0	genome.wustl.edu	37	19	11548711	11548711	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	19	11548711	11548711	C	T	SNP	PRKCSH	ENST00000252455	human	ensembl	74_37	+1	known	missense	c.211	p.P71S	1.000	superfamily_LDrepeatLR_classA_rpt	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_LDrepeatLR_classA_rpt,pfscan_EF_hand_dom	-	no_errors	PRKCSH	HGNC	ENSG00000130175	tier1	-	-	33	0	0.00	52	9	14.75
PSTK	0	genome.wustl.edu	37	10	124740046	124740046	+	Missense_Mutation	SNP	A	A	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	10	124740046	124740046	A	T	SNP	PSTK	ENST00000368887	human	ensembl	74_37	+1	known	missense	c.51	p.K17N	0.001	superfamily_P-loop_NTPase	pfam_Chromatin_KTI12,superfamily_P-loop_NTPase,tigrfam_L-seryl-tRNA_Sec_kinase_euk	-	no_errors	PSTK	HGNC	ENSG00000179988	tier1	-	-	12	0	0.00	1	24	96.00
PTCH1	0	genome.wustl.edu	37	9	98231241	98231241	+	Frame_Shift_Del	DEL	G	G	-			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	9	98231241	98231241	G	-	DEL	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	frame_shift_del	c.2042	p.P681fs	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	tier1			40	0	0.00	5	41	89.13
PTCH2	0	genome.wustl.edu	37	1	45294908	45294908	+	Frame_Shift_Del	DEL	A	A	-			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	45294908	45294908	A	-	DEL	PTCH2	ENST00000372192	human	ensembl	74_37	-1	known	frame_shift_del	c.1292	p.L431fs	1.000	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH2	HGNC	ENSG00000117425	tier1			25	0	0.00	13	6	31.58
RBBP5	0	genome.wustl.edu	37	1	205069382	205069382	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	205069382	205069382	G	T	SNP	RBBP5	ENST00000264515	human	ensembl	74_37	-1	known	missense	c.650	p.T217K	1.000	smart_WD40_repeat	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RBBP5	HGNC	ENSG00000117222				13	0	0.00	24	2	7.69
ROBO2	0	genome.wustl.edu	37	3	77681788	77681788	+	Silent	SNP	A	A	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	77681788	77681788	A	C	SNP	ROBO2	ENST00000332191	human	ensembl	74_37	+1	novel	silent	c.3924	p.G1308	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008	tier1	-	-	34	0	0.00	7	15	68.18
RRS1	0	genome.wustl.edu	37	8	67342179	67342179	+	Silent	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	8	67342179	67342179	G	T	SNP	RRS1	ENST00000320270	human	ensembl	74_37	+1	known	silent	c.813	p.L271	0.991	NULL	pfam_Ribosom_reg	-	no_errors	RRS1	HGNC	ENSG00000179041	tier1	-	-	15	0	0.00	20	17	45.95
RTN1	0	genome.wustl.edu	37	14	60212626	60212626	+	Missense_Mutation	SNP	C	C	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	14	60212626	60212626	C	G	SNP	RTN1	ENST00000267484	human	ensembl	74_37	-1	known	missense	c.815	p.R272P	0.001	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN1	HGNC	ENSG00000139970	tier1	-	-	37	0	0.00	16	26	60.47
SALL1	0	genome.wustl.edu	37	16	51173264	51173264	+	Missense_Mutation	SNP	C	C	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	16	51173264	51173264	C	A	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	missense	c.2869	p.A957S	0.997	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449				15	0	0.00	3	3	50.00
SAMD9L	0	genome.wustl.edu	37	7	92761326	92761326	+	Missense_Mutation	SNP	C	C	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	92761326	92761326	C	A	SNP	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	missense	c.3959	p.S1320I	0.001	NULL	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409	tier1	-	-	35	0	0.00	34	16	32.00
SCAND3	0	genome.wustl.edu	37	6	28543364	28543364	+	Nonsense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	6	28543364	28543364	G	T	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	nonsense	c.1118	p.S373*	0.994	pfam_Integrase_cat-core,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040	tier1	-	-	63	0	0.00	80	5	5.88
SCN8A	0	genome.wustl.edu	37	12	52159718	52159718	+	Missense_Mutation	SNP	G	G	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	12	52159718	52159718	G	C	SNP	SCN8A	ENST00000354534	human	ensembl	74_37	+1	known	missense	c.2808	p.E936D	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	tier1	-	-	105	0	0.00	59	48	44.86
SEC61A2	0	genome.wustl.edu	37	10	12209761	12209761	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	10	12209761	12209761	G	A	SNP	SEC61A2	ENST00000475268	human	ensembl	74_37	+1	known	silent	c.1254	p.A418	0.690	pirsf_SecY/SEC61-alpha	pfam_SecY/SEC61-alpha,pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY/SEC61-alpha,tigrfam_SecY/SEC61-alpha	-	no_errors	SEC61A2	HGNC	ENSG00000065665	tier1	rs148632115	-	29	0	0.00	19	12	38.71
SEMA6C	0	genome.wustl.edu	37	1	151109548	151109548	+	Silent	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	151109548	151109548	C	T	SNP	SEMA6C	ENST00000368913	human	ensembl	74_37	-1	known	silent	c.759	p.V253	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6C	HGNC	ENSG00000143434	tier1	-	-	31	0	0.00	49	18	26.87
SETDB2	0	genome.wustl.edu	37	13	50050669	50050669	+	Missense_Mutation	SNP	A	A	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	13	50050669	50050669	A	T	SNP	SETDB2	ENST00000317257	human	ensembl	74_37	+1	known	missense	c.399	p.E133D	0.051	NULL	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom	-	no_errors	SETDB2	HGNC	ENSG00000136169	tier1	-	-	22	0	0.00	11	9	45.00
SFXN5	0	genome.wustl.edu	37	2	73247372	73247372	+	Frame_Shift_Del	DEL	G	G	-			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	2	73247372	73247372	G	-	DEL	SFXN5	ENST00000272433	human	ensembl	74_37	-1	known	frame_shift_del	c.353	p.P118fs	1.000	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN5	HGNC	ENSG00000144040	tier1			16	0	0.00	12	4	25.00
SLC16A5	0	genome.wustl.edu	37	17	73096277	73096277	+	Silent	SNP	T	T	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	17	73096277	73096277	T	A	SNP	SLC16A5	ENST00000329783	human	ensembl	74_37	+1	known	silent	c.519	p.L173	0.007	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A5	HGNC	ENSG00000170190	tier1	-	-	48	0	0.00	55	22	28.57
SLC45A2	0	genome.wustl.edu	37	5	33984553	33984553	+	Nonsense_Mutation	SNP	C	C	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	5	33984553	33984553	C	A	SNP	SLC45A2	ENST00000296589	human	ensembl	74_37	-1	known	nonsense	c.136	p.E46*	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A2	HGNC	ENSG00000164175	tier1	-	-	41	0	0.00	21	7	25.00
SLC6A16	0	genome.wustl.edu	37	19	49797779	49797779	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	19	49797779	49797779	G	A	SNP	SLC6A16	ENST00000335875	human	ensembl	74_37	-1	known	silent	c.1261	p.L421	0.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127	tier1	-	-	68	0	0.00	73	10	11.90
SLC9C2	0	genome.wustl.edu	37	1	173556830	173556830	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	173556830	173556830	C	T	SNP	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	missense	c.497	p.R166H	0.021	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753	tier1	-	-	26	0	0.00	26	6	18.75
SLX4	0	genome.wustl.edu	37	16	3652151	3652151	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	16	3652151	3652151	C	T	SNP	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	missense	c.918	p.M306I	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827	tier1	-	-	36	0	0.00	24	11	31.43
SPAG9	0	genome.wustl.edu	37	17	49091695	49091695	+	Nonsense_Mutation	SNP	C	C	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	17	49091695	49091695	C	A	SNP	SPAG9	ENST00000262013	human	ensembl	74_37	-1	known	nonsense	c.1111	p.E371*	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294	tier1	-	-	25	0	0.00	17	19	52.78
SPTA1	0	genome.wustl.edu	37	1	158612700	158612700	+	Silent	SNP	T	T	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	158612700	158612700	T	C	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	silent	c.4509	p.K1503	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	tier1	-	-	36	0	0.00	21	32	60.38
SSX5	0	genome.wustl.edu	37	X	48053592	48053592	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	X	48053592	48053592	C	T	SNP	SSX5	ENST00000311798	human	ensembl	74_37	-1	known	missense	c.376	p.D126N	0.002	NULL	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX5	HGNC	ENSG00000165583	tier1	-	-	87	0	0.00	28	58	67.44
SYT17	0	genome.wustl.edu	37	16	19191850	19191850	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	16	19191850	19191850	G	A	SNP	SYT17	ENST00000355377	human	ensembl	74_37	+1	known	missense	c.320	p.R107Q	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT17	HGNC	ENSG00000103528	tier1	-	-	32	0	0.00	22	6	21.43
SZT2	0	genome.wustl.edu	37	1	43907451	43907451	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	43907451	43907451	G	T	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	missense	c.7533	p.M2511I	1.000	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				37	0	0.00	31	3	8.82
TAS2R8	0	genome.wustl.edu	37	12	10959271	10959271	+	Silent	SNP	A	A	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	12	10959271	10959271	A	G	SNP	TAS2R8	ENST00000240615	human	ensembl	74_37	-1	known	silent	c.309	p.L103	0.021	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	TAS2R8	HGNC	ENSG00000121314	tier1	-	-	22	0	0.00	35	34	49.28
TIAM1	0	genome.wustl.edu	37	21	32525396	32525396	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	21	32525396	32525396	G	A	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	silent	c.3228	p.L1076	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299	tier1	-	-	48	0	0.00	41	13	24.07
TMPRSS9	0	genome.wustl.edu	37	19	2389893	2389893	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	19	2389893	2389893	G	A	SNP	TMPRSS9	ENST00000332578	human	ensembl	74_37	+1	known	missense	c.110	p.S37N	0.003	pirsf_Pept_S1A_polyserase-1	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS9	HGNC	ENSG00000178297	tier1	-	-	29	0	0.00	44	27	38.03
TP53	0	genome.wustl.edu	37	17	7577530	7577532	+	In_Frame_Del	DEL	TGG	TGG	-			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	TGG	TGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	17	7577530	7577532	TGG	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	in_frame_del	c.751_749	p.PI250in_frame_delL	1.000:1.000:1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			50	0	0.00	19	48	71.64
TPGS2	0	genome.wustl.edu	37	18	34376768	34376768	+	Nonstop_Mutation	SNP	T	T	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	18	34376768	34376768	T	A	SNP	TPGS2	ENST00000334295	human	ensembl	74_37	-1	known	nonstop	c.903	p.*301C	0.993	NULL	smart_SMI1/KNR4_like_dom	-	no_errors	TPGS2	HGNC	ENSG00000134779	tier1	-	-	21	0	0.00	32	14	30.43
TPRXL	0	genome.wustl.edu	37	3	14106309	14106309	+	Silent	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	14106309	14106309	C	T	SNP	TPRXL	ENST00000326972	human	ensembl	74_37	+1	known	silent	c.633	p.S211	0.999	NULL	NULL	-	no_errors	TPRXL	HGNC	ENSG00000180438				10	0	0.00	20	11	35.48
TRIM5	0	genome.wustl.edu	37	11	5687321	5687321	+	Frame_Shift_Del	DEL	A	A	-			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	11	5687321	5687321	A	-	DEL	TRIM5	ENST00000396853	human	ensembl	74_37	-1	known	frame_shift_del	c.761	p.L254fs	0.002	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM5	HGNC	ENSG00000132256	tier1			29	0	0.00	24	3	11.11
TTLL9	0	genome.wustl.edu	37	20	30526987	30526987	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	20	30526987	30526987	G	T	SNP	TTLL9	ENST00000375938	human	ensembl	74_37	+1	known	missense	c.1161	p.M387I	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL9	HGNC	ENSG00000131044	tier1	-	-	37	0	0.00	66	5	7.04
TYRP1	0	genome.wustl.edu	37	9	12707960	12707960	+	RNA	SNP	T	T	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	9	12707960	12707960	T	C	SNP	TYRP1	ENST00000473504	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TYRP1	HGNC	ENSG00000107165	tier1	-	-	26	0	0.00	16	5	23.81
UBXN2A	0	genome.wustl.edu	37	2	24222791	24222791	+	RNA	SNP	A	A	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	2	24222791	24222791	A	T	SNP	UBXN2A	ENST00000446425	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	UBXN2A	HGNC	ENSG00000173960	tier1	-	-	15	0	0.00	3	12	80.00
UGT1A9	0	genome.wustl.edu	37	2	234581034	234581034	+	Missense_Mutation	SNP	A	A	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	2	234581034	234581034	A	G	SNP	UGT1A9	ENST00000354728	human	ensembl	74_37	+1	known	missense	c.454	p.N152D	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A9	HGNC	ENSG00000241119				33	0	0.00	44	6	12.00
UNC13A	0	genome.wustl.edu	37	19	17767143	17767143	+	Nonsense_Mutation	SNP	C	C	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	19	17767143	17767143	C	A	SNP	UNC13A	ENST00000428389	human	ensembl	74_37	-1	known	nonsense	c.1096	p.E366*	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_C2_dom,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	tier1	-	-	9	0	0.00	16	10	38.46
UNC13C	0	genome.wustl.edu	37	15	54592555	54592555	+	Missense_Mutation	SNP	A	A	G			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	15	54592555	54592555	A	G	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	missense	c.4252	p.I1418V	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	tier1	-	-	33	0	0.00	19	15	44.12
USE1	0	genome.wustl.edu	37	19	17330466	17330466	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	19	17330466	17330466	G	A	SNP	USE1	ENST00000263897	human	ensembl	74_37	+1	known	silent	c.624	p.A208	0.009	pfam_Vesicle_transport_protein_Use1	pfam_Vesicle_transport_protein_Use1	-	no_errors	USE1	HGNC	ENSG00000053501				36	0	0.00	29	3	9.38
USH1G	0	genome.wustl.edu	37	17	72915950	72915950	+	Silent	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	17	72915950	72915950	G	A	SNP	USH1G	ENST00000319642	human	ensembl	74_37	-1	known	silent	c.981	p.H327	0.942	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	USH1G	HGNC	ENSG00000182040	tier1	-	-	46	0	0.00	92	31	25.20
WDR81	0	genome.wustl.edu	37	17	1639332	1639332	+	Splice_Site	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	17	1639332	1639332	G	T	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	splice_site	c.5326-1	e9-1	1.000	-	-	-	no_errors	WDR81	HGNC	ENSG00000167716				26	0	0.00	70	4	5.41
WDR83	0	genome.wustl.edu	37	19	12780638	12780638	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	19	12780638	12780638	G	A	SNP	WDR83	ENST00000242796	human	ensembl	74_37	+1	known	missense	c.34	p.E12K	0.997	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR83	HGNC	ENSG00000123154	tier1	-	-	30	0	0.00	50	14	21.88
WDR87	0	genome.wustl.edu	37	19	38378468	38378468	+	Missense_Mutation	SNP	A	A	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	19	38378468	38378468	A	C	SNP	WDR87	ENST00000447313	human	ensembl	74_37	-1	known	missense	c.5843	p.L1948R	0.000	superfamily_ARM-type_fold	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Quinolinate_PRibosylTrfase_C,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR87	HGNC	ENSG00000171804	tier1	-	-	59	0	0.00	67	20	22.99
ZDHHC23	0	genome.wustl.edu	37	3	113672833	113672833	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	3	113672833	113672833	G	T	SNP	ZDHHC23	ENST00000478793	human	ensembl	74_37	+1	known	missense	c.448	p.G150C	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC23	HGNC	ENSG00000184307	tier1	-	-	115	0	0.00	120	34	22.08
ZNF264	0	genome.wustl.edu	37	19	57724047	57724047	+	Nonsense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	19	57724047	57724047	C	T	SNP	ZNF264	ENST00000263095	human	ensembl	74_37	+1	known	nonsense	c.1582	p.R528*	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF264	HGNC	ENSG00000083844	tier1	-	-	46	0	0.00	57	13	18.57
ZNF43	0	genome.wustl.edu	37	19	21991047	21991047	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	19	21991047	21991047	C	T	SNP	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	missense	c.1792	p.E598K	0.026	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521	tier1	-	-	23	0	0.00	23	15	39.47
ZNF486	0	genome.wustl.edu	37	19	20308434	20308434	+	Silent	SNP	T	T	C			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	19	20308434	20308434	T	C	SNP	ZNF486	ENST00000335117	human	ensembl	74_37	+1	known	silent	c.915	p.H305	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229	tier1	-	-	28	0	0.00	20	11	35.48
ZNF496	0	genome.wustl.edu	37	1	247463936	247463936	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	1	247463936	247463936	G	T	SNP	ZNF496	ENST00000366498	human	ensembl	74_37	-1	known	missense	c.1757	p.A586D	0.001	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714	tier1	-	-	19	0	0.00	28	6	17.65
ZNF599	0	genome.wustl.edu	37	19	35250997	35250997	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	19	35250997	35250997	G	A	SNP	ZNF599	ENST00000329285	human	ensembl	74_37	-1	known	missense	c.709	p.R237C	0.128	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF599	HGNC	ENSG00000153896	tier1	rs143039488	-	31	0	0.00	45	12	21.05
ZNF767	0	genome.wustl.edu	37	7	149317094	149317094	+	RNA	SNP	C	C	A			TCGA-IG-A3QL-01A-11D-A247-09	TCGA-IG-A3QL-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f2406c6-2f8d-4b40-984d-b737391f1e71	b5d4a67d-09d9-4e47-adf6-6691f9a1aec6	7	149317094	149317094	C	A	SNP	ZNF767	ENST00000463567	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.069	-	-	-	no_errors	ZNF767	HGNC	ENSG00000133624	tier1	-	-	56	0	0.00	105	18	14.63
