Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCF1	0	genome.wustl.edu	37	6	30545853	30545854	+	Frame_Shift_Ins	INS	-	-	A			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	6	30545853	30545854	-	A	INS	ABCF1	ENST00000326195	human	ensembl	74_37	+1	known	frame_shift_ins	c.217_218	p.K77fs	1.000:1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574	tier1			19	0	0.00	23	3	11.54
C16orf96	0	genome.wustl.edu	37	16	4638207	4638207	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	16	4638207	4638207	G	T	SNP	C16orf96	ENST00000444310	human	ensembl	74_37	+1	known	missense	c.2467	p.V823F	0.096	NULL	NULL	-	no_errors	C16orf96	HGNC	ENSG00000205832	tier1	-	-	44	0	0.00	25	3	10.71
C1QTNF6	0	genome.wustl.edu	37	22	37576428	37576428	+	RNA	SNP	C	C	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	22	37576428	37576428	C	T	SNP	C1QTNF6	ENST00000470655	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1QTNF6	HGNC	ENSG00000133466	tier1	-	-	61	0	0.00	42	4	8.70
C1orf111	0	genome.wustl.edu	37	1	162343862	162343862	+	Silent	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	1	162343862	162343862	G	T	SNP	C1orf111	ENST00000367935	human	ensembl	74_37	-1	known	silent	c.762	p.G254	0.000	NULL	NULL	-	no_errors	C1orf111	HGNC	ENSG00000171722				37	0	0.00	38	2	5.00
C2orf43	0	genome.wustl.edu	37	2	20885317	20885317	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	2	20885317	20885317	G	T	SNP	C2orf43	ENST00000403006	human	ensembl	74_37	-1	putative	missense	c.685	p.P229T	0.053	NULL	pfam_DUF2305	-	no_errors	C2orf43	HGNC	ENSG00000118961				43	0	0.00	47	3	6.00
CILP2	0	genome.wustl.edu	37	19	19656499	19656499	+	Silent	SNP	C	C	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	19	19656499	19656499	C	T	SNP	CILP2	ENST00000291495	human	ensembl	74_37	+1	known	silent	c.3145	p.L1049	0.997	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP2	HGNC	ENSG00000160161				60	0	0.00	46	3	6.12
CNN2	0	genome.wustl.edu	37	19	1037969	1037971	+	RNA	DEL	TTT	TTT	-			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	TTT	TTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	19	1037969	1037971	TTT	-	DEL	CNN2	ENST00000606983	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	CNN2	HGNC	ENSG00000064666	tier1			20	0	0.00	10	7	41.18
COL22A1	0	genome.wustl.edu	37	8	139697551	139697551	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	8	139697551	139697551	G	A	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	missense	c.2867	p.A956V	0.012	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				29	0	0.00	29	2	6.45
DERL1	0	genome.wustl.edu	37	8	124054277	124054277	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	8	124054277	124054277	C	T	SNP	DERL1	ENST00000259512	human	ensembl	74_37	-1	known	missense	c.86	p.G29D	1.000	pfam_DER1	pfam_DER1	-	no_errors	DERL1	HGNC	ENSG00000136986	tier1	-	-	112	0	0.00	68	4	5.56
DNAJC11	0	genome.wustl.edu	37	1	6700029	6700029	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	1	6700029	6700029	G	T	SNP	DNAJC11	ENST00000377577	human	ensembl	74_37	-1	known	missense	c.1186	p.P396T	1.000	NULL	pfam_DnaJ-like_C11_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC11	HGNC	ENSG00000007923	tier1	-	-	37	0	0.00	38	4	9.52
ENSG00000200294	0	genome.wustl.edu	37	10	73940733	73940733	+	RNA	DEL	T	T	-			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	10	73940733	73940733	T	-	DEL	ENSG00000200294	ENST00000363424	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.371	-	-	-	no_errors	SNORA36	RFAM	ENSG00000200294	tier1			21	0	0.00	18	4	18.18
ENSG00000223697	0	genome.wustl.edu	37	8	133854714	133854715	+	RNA	INS	-	-	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	8	133854714	133854715	-	T	INS	ENSG00000223697	ENST00000608375	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.014:0.003	-	-	-	no_errors	AF230666.2	Clone_based_vega_gene	ENSG00000223697	tier1			18	0	0.00	16	6	27.27
ENSG00000261711	0	genome.wustl.edu	37	16	34712970	34712970	+	RNA	DEL	A	A	-			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	16	34712970	34712970	A	-	DEL	ENSG00000261711	ENST00000569028	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	RP11-80F22.9	Clone_based_vega_gene	ENSG00000261711	tier1			41	0	0.00	27	4	12.90
FBN1	0	genome.wustl.edu	37	15	48777639	48777639	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	15	48777639	48777639	G	T	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.3644	p.S1215Y	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				54	0	0.00	37	2	5.13
FOXRED1	0	genome.wustl.edu	37	11	126147446	126147446	+	Silent	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	11	126147446	126147446	G	T	SNP	FOXRED1	ENST00000263578	human	ensembl	74_37	+1	known	silent	c.1323	p.G441	0.985	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	FOXRED1	HGNC	ENSG00000110074				43	0	0.00	35	4	10.26
GDF10	0	genome.wustl.edu	37	10	48438447	48438447	+	Silent	SNP	C	C	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	10	48438447	48438447	C	T	SNP	GDF10	ENST00000224605	human	ensembl	74_37	-1	known	silent	c.264	p.R88	0.980	pfam_TGF-b_N,pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	GDF10	HGNC	ENSG00000107623	tier1	-	-	58	0	0.00	39	4	9.30
GPRIN2	0	genome.wustl.edu	37	10	46999608	46999608	+	Frame_Shift_Del	DEL	C	C	-			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	10	46999608	46999608	C	-	DEL	GPRIN2	ENST00000374314	human	ensembl	74_37	+1	known	frame_shift_del	c.728	p.A243fs	0.001	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	tier1			72	0	0.00	64	7	9.86
HSD17B4	0	genome.wustl.edu	37	5	118814681	118814681	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	5	118814681	118814681	C	T	SNP	HSD17B4	ENST00000256216	human	ensembl	74_37	+1	known	missense	c.587	p.A196V	1.000	prints_DHB_DH	pfam_MaoC_dom,pfam_DH_sc/Rdtase_SDR,pfam_SCP2_sterol-bd_dom,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B4	HGNC	ENSG00000133835				54	0	0.00	36	3	7.69
KIFC2	0	genome.wustl.edu	37	8	145697980	145697980	+	Frame_Shift_Del	DEL	C	C	-			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	8	145697980	145697980	C	-	DEL	KIFC2	ENST00000301332	human	ensembl	74_37	+1	known	frame_shift_del	c.1752	p.S584fs	0.976	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIFC2	HGNC	ENSG00000167702	tier1			16	0	0.00	4	2	33.33
MAP4K3	0	genome.wustl.edu	37	2	39552664	39552665	+	In_Frame_Ins	INS	-	-	ATC			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	2	39552664	39552665	-	ATC	INS	MAP4K3	ENST00000263881	human	ensembl	74_37	-1	known	in_frame_ins	c.913_912	p.304in_frame_insD	1.000:1.000	superfamily_Kinase-like_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K3	HGNC	ENSG00000011566	tier1			33	0	0.00	33	2	5.71
MARCH7	0	genome.wustl.edu	37	2	160604680	160604680	+	Frame_Shift_Del	DEL	T	T	-			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	2	160604680	160604680	T	-	DEL	MARCH7	ENST00000259050	human	ensembl	74_37	+1	known	frame_shift_del	c.879	p.S296fs	0.910	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536	tier1			27	0	0.00	21	3	12.50
MDN1	0	genome.wustl.edu	37	6	90371837	90371837	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	6	90371837	90371837	C	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.14534	p.G4845D	0.996	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	tier1	-	-	81	0	0.00	63	4	5.97
MOSPD1	0	genome.wustl.edu	37	X	134033227	134033227	+	RNA	DEL	T	T	-			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	X	134033227	134033227	T	-	DEL	MOSPD1	ENST00000462060	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MOSPD1	HGNC	ENSG00000101928	tier1			23	0	0.00	25	3	10.71
MRRF	0	genome.wustl.edu	37	9	125084867	125084867	+	Nonsense_Mutation	SNP	G	G	A			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	9	125084867	125084867	G	A	SNP	MRRF	ENST00000373723	human	ensembl	74_37	+1	known	nonsense	c.600	p.W200*	1.000	NULL	pfam_Ribosome_recyc_fac_dom,superfamily_Ribosome_recyc_fac_dom	-	no_errors	MRRF	HGNC	ENSG00000148187	tier1	-	-	56	0	0.00	42	4	8.70
MUC12	0	genome.wustl.edu	37	7	100612955	100612956	+	In_Frame_Ins	INS	-	-	CTG			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	7	100612955	100612956	-	CTG	INS	MUC12	ENST00000536621	human	ensembl	74_37	+1	known	in_frame_ins	c.52_53	p.19in_frame_insA	0.000:0.000	NULL	pfam_SEA_dom	-	no_errors	MUC12	HGNC	ENSG00000205277	tier1			28	0	0.00	17	5	22.73
NMD3	0	genome.wustl.edu	37	3	160951234	160951234	+	Silent	SNP	G	G	A			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	3	160951234	160951234	G	A	SNP	NMD3	ENST00000351193	human	ensembl	74_37	+1	known	silent	c.324	p.K108	1.000	pfam_NMD3	pfam_NMD3	-	no_errors	NMD3	HGNC	ENSG00000169251				59	0	0.00	25	2	7.41
NR4A3	0	genome.wustl.edu	37	9	102590532	102590532	+	Nonsense_Mutation	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	9	102590532	102590532	G	T	SNP	NR4A3	ENST00000330847	human	ensembl	74_37	+1	known	nonsense	c.241	p.E81*	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NOR1_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A3	HGNC	ENSG00000119508				17	0	0.00	24	2	7.69
ODF2L	0	genome.wustl.edu	37	1	86842069	86842069	+	Silent	SNP	C	C	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	1	86842069	86842069	C	T	SNP	ODF2L	ENST00000317336	human	ensembl	74_37	-1	known	silent	c.657	p.L219	0.970	NULL	NULL	-	no_errors	ODF2L	HGNC	ENSG00000122417	tier1	-	-	92	0	0.00	69	4	5.48
OR5AU1	0	genome.wustl.edu	37	14	21623832	21623832	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	14	21623832	21623832	G	T	SNP	OR5AU1	ENST00000304418	human	ensembl	74_37	-1	known	missense	c.353	p.S118Y	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AU1	HGNC	ENSG00000169327	tier1	-	-	70	0	0.00	60	4	6.25
OR5L1	0	genome.wustl.edu	37	11	55579776	55579776	+	Silent	SNP	C	C	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	11	55579776	55579776	C	T	SNP	OR5L1	ENST00000333973	human	ensembl	74_37	+1	known	silent	c.834	p.Y278	0.252	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5L1	HGNC	ENSG00000186117				25	0	0.00	29	2	6.45
PBX2P1	0	genome.wustl.edu	37	3	142897268	142897269	+	RNA	INS	-	-	TTGT			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	3	142897268	142897269	0	TTGT	INS	PBX2P1	ENST00000560287	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.430:0.352	-	-	-	no_errors	PBX2P1	HGNC	ENSG00000244171				8	0	0.00	8	4	33.33
POLR1A	0	genome.wustl.edu	37	2	86271375	86271375	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	2	86271375	86271375	G	A	SNP	POLR1A	ENST00000263857	human	ensembl	74_37	-1	known	missense	c.3022	p.R1008C	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654				35	0	0.00	38	2	5.00
RNLS	0	genome.wustl.edu	37	10	90122415	90122415	+	Silent	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	10	90122415	90122415	G	T	SNP	RNLS	ENST00000331772	human	ensembl	74_37	-1	known	silent	c.594	p.L198	1.000	pfam_Amino_oxidase	pfam_Amino_oxidase	-	no_errors	RNLS	HGNC	ENSG00000184719				25	0	0.00	37	2	5.00
RP1	0	genome.wustl.edu	37	8	55537883	55537883	+	Nonsense_Mutation	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	8	55537883	55537883	G	T	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	nonsense	c.1441	p.G481*	0.604	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				37	0	0.00	30	2	6.25
SERPINA13P	0	genome.wustl.edu	37	14	95108116	95108116	+	RNA	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	14	95108116	95108116	G	T	SNP	SERPINA13P	ENST00000469935	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SERPINA13P	HGNC	ENSG00000187483	tier1	-	-	38	0	0.00	27	4	12.90
SMIM11	0	genome.wustl.edu	37	21	35774492	35774492	+	RNA	DEL	T	T	-			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	21	35774492	35774492	T	-	DEL	SMIM11	ENST00000481710	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SMIM11	HGNC	ENSG00000205670	tier1			24	0	0.00	23	5	17.86
SNX21	0	genome.wustl.edu	37	20	44470649	44470649	+	RNA	DEL	T	T	-			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	20	44470649	44470649	T	-	DEL	SNX21	ENST00000344780	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	SNX21	HGNC	ENSG00000124104	tier1			38	0	0.00	22	5	18.52
STYK1	0	genome.wustl.edu	37	12	10772915	10772915	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	12	10772915	10772915	C	T	SNP	STYK1	ENST00000075503	human	ensembl	74_37	-1	known	missense	c.1097	p.R366H	0.998	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STYK1	HGNC	ENSG00000060140				32	0	0.00	34	2	5.56
SUCLG1	0	genome.wustl.edu	37	2	84668530	84668530	+	Frame_Shift_Del	DEL	A	A	-			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	2	84668530	84668530	A	-	DEL	SUCLG1	ENST00000393868	human	ensembl	74_37	-1	known	frame_shift_del	c.372	p.F124fs	1.000	pfam_CoA-bd,smart_CoA-bd,pirsf_CoA_lig_alpha,tigrfam_CoA_lig_alpha	pfam_CoA-bd,pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_CoA_lig_alpha,prints_CoA_lig_alpha,tigrfam_CoA_lig_alpha	-	no_errors	SUCLG1	HGNC	ENSG00000163541	tier1			24	0	0.00	23	2	8.00
TDRD6	0	genome.wustl.edu	37	6	46660414	46660415	+	Frame_Shift_Ins	INS	-	-	A			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	6	46660414	46660415	-	A	INS	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	frame_shift_ins	c.4549_4550	p.M1520fs	0.002:0.009	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	tier1			27	0	0.00	29	3	9.38
TEP1	0	genome.wustl.edu	37	14	20851740	20851740	+	Silent	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	14	20851740	20851740	G	T	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	silent	c.3774	p.G1258	0.999	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	tier1	-	-	33	0	0.00	24	4	14.29
TRMT11	0	genome.wustl.edu	37	6	126333975	126333975	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	6	126333975	126333975	G	T	SNP	TRMT11	ENST00000334379	human	ensembl	74_37	+1	known	missense	c.984	p.K328N	0.645	pirsf_tRNA_mtfrase_TRM11	pfam_RNA_methylase_dom,pirsf_tRNA_mtfrase_TRM11,prints_N12N6_MeTrfase	-	no_errors	TRMT11	HGNC	ENSG00000066651	tier1	-	-	47	0	0.00	28	3	9.38
TTI2	0	genome.wustl.edu	37	8	33357912	33357912	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	8	33357912	33357912	G	T	SNP	TTI2	ENST00000360742	human	ensembl	74_37	-1	known	missense	c.1356	p.S452R	0.000	superfamily_ARM-type_fold	pfam_DUF2454,superfamily_ARM-type_fold	-	no_errors	TTI2	HGNC	ENSG00000129696	tier1	-	-	80	0	0.00	60	4	6.25
TTN	0	genome.wustl.edu	37	2	179398098	179398098	+	Missense_Mutation	SNP	C	C	A			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	2	179398098	179398098	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.95540	p.G31847V	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	65	0	0.00	40	4	9.09
UBE2D2	0	genome.wustl.edu	37	5	139006354	139006354	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	5	139006354	139006354	G	T	SNP	UBE2D2	ENST00000398733	human	ensembl	74_37	+1	known	missense	c.412	p.A138S	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2D2	HGNC	ENSG00000131508	tier1	-	-	47	0	0.00	43	4	8.51
UBXN6	0	genome.wustl.edu	37	19	4453480	4453480	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	19	4453480	4453480	C	T	SNP	UBXN6	ENST00000301281	human	ensembl	74_37	-1	known	missense	c.287	p.S96N	0.000	NULL	pfam_PUB_domain,pfam_UBX,smart_PUG-dom,smart_UBX,pfscan_UBX	-	no_errors	UBXN6	HGNC	ENSG00000167671	tier1	-	-	19	0	0.00	18	4	18.18
ZDHHC8P1	0	genome.wustl.edu	37	22	23733627	23733627	+	RNA	SNP	G	G	A			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	22	23733627	23733627	G	A	SNP	ZDHHC8P1	ENST00000255890	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.060	-	-	-	no_errors	ZDHHC8P1	HGNC	ENSG00000133519				22	0	0.00	17	3	15.00
ZNF461	0	genome.wustl.edu	37	19	37128585	37128585	+	RNA	DEL	A	A	-			TCGA-IG-A4QT-01A-21D-A27G-09	TCGA-IG-A4QT-10A-02D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c70203be-20a3-486b-960a-ce6e84f501a4	b0daba86-7d54-4faf-bcd8-8c2b10f4e42d	19	37128585	37128585	A	-	DEL	ZNF461	ENST00000589442	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.035	-	-	-	no_errors	ZNF461	HGNC	ENSG00000197808	tier1			27	0	0.00	23	6	20.69
