Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCC8	0	genome.wustl.edu	37	11	17416732	17416732	+	Silent	SNP	C	C	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	11	17416732	17416732	C	A	SNP	ABCC8	ENST00000302539	human	ensembl	74_37	-1	known	silent	c.4401	p.L1467	0.994	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC8	HGNC	ENSG00000006071	tier1	-	-	19	0	0.00	21	6	22.22
ADAM23	0	genome.wustl.edu	37	2	207452839	207452839	+	Missense_Mutation	SNP	A	A	G			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	2	207452839	207452839	A	G	SNP	ADAM23	ENST00000264377	human	ensembl	74_37	+1	known	missense	c.1813	p.K605E	1.000	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948	tier1	-	-	67	0	0.00	43	19	30.65
ADAM28	0	genome.wustl.edu	37	8	24193159	24193159	+	Silent	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	8	24193159	24193159	G	A	SNP	ADAM28	ENST00000437154	human	ensembl	74_37	+1	known	silent	c.1572	p.R524	0.998	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,pfam_ADAM_Cys-rich,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980	tier1	-	-	85	0	0.00	32	60	65.22
ADAMTS14	0	genome.wustl.edu	37	10	72498630	72498630	+	Silent	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	10	72498630	72498630	G	A	SNP	ADAMTS14	ENST00000373208	human	ensembl	74_37	+1	known	silent	c.1641	p.S547	0.000	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316	tier1	-	-	141	0	0.00	60	15	20.00
ARFIP1	0	genome.wustl.edu	37	4	153833145	153833145	+	RNA	DEL	A	A	-			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	4	153833145	153833145	A	-	DEL	ARFIP1	ENST00000510497	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARFIP1	HGNC	ENSG00000164144	tier1			34	0	0.00	21	3	12.50
ARHGEF5	0	genome.wustl.edu	37	7	144062632	144062632	+	Nonsense_Mutation	SNP	C	C	G			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	7	144062632	144062632	C	G	SNP	ARHGEF5	ENST00000056217	human	ensembl	74_37	+1	known	nonsense	c.2870	p.S957*	0.005	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF5	HGNC	ENSG00000050327	tier1	rs202036368	-	17	0	0.00	13	4	23.53
ASB10	0	genome.wustl.edu	37	7	150884267	150884268	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	7	150884267	150884268	AG	-	DEL	ASB10	ENST00000422024	human	ensembl	74_37	-1	known	frame_shift_del	c.86_85	p.L29fs	0.003:0.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB10	HGNC	ENSG00000146926	tier1			31	0	0.00	26	3	10.34
AWAT1	0	genome.wustl.edu	37	X	69454560	69454560	+	Silent	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	X	69454560	69454560	G	A	SNP	AWAT1	ENST00000374521	human	ensembl	74_37	+1	known	silent	c.15	p.K5	0.048	NULL	pfam_DAGAT	-	no_errors	AWAT1	HGNC	ENSG00000204195	tier1	-	-	69	0	0.00	53	6	10.17
BCR	0	genome.wustl.edu	37	22	23658024	23658025	+	RNA	INS	-	-	TA			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	22	23658024	23658025	-	TA	INS	BCR	ENST00000436990	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997:0.998	-	-	-	no_errors	BCR	HGNC	ENSG00000186716	tier1			34	0	0.00	18	2	10.00
BEAN1	0	genome.wustl.edu	37	16	66511471	66511471	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	16	66511471	66511471	G	A	SNP	BEAN1	ENST00000536005	human	ensembl	74_37	+1	known	missense	c.298	p.E100K	0.019	NULL	NULL	-	no_errors	BEAN1	HGNC	ENSG00000166546	tier1	-	-	19	0	0.00	20	8	28.57
BNC1	0	genome.wustl.edu	37	15	83932769	83932769	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	15	83932769	83932769	G	A	SNP	BNC1	ENST00000345382	human	ensembl	74_37	-1	known	missense	c.1234	p.R412W	0.997	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	tier1	-	-	37	0	0.00	21	11	34.38
BTBD11	0	genome.wustl.edu	37	12	108013823	108013823	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	12	108013823	108013823	G	A	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	missense	c.2513	p.R838H	1.000	NULL	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				75	0	0.00	36	4	10.00
C19orf55	0	genome.wustl.edu	37	19	36258937	36258937	+	Missense_Mutation	SNP	A	A	C			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	19	36258937	36258937	A	C	SNP	C19orf55	ENST00000396908	human	ensembl	74_37	+1	known	missense	c.1190	p.Q397P	0.791	NULL	NULL	-	no_errors	C19orf55	HGNC	ENSG00000167595				16	0	0.00	34	4	10.53
CACNA1C	0	genome.wustl.edu	37	12	2800324	2800324	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	12	2800324	2800324	G	A	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.6589	p.E2197K	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	tier1	-	-	48	0	0.00	60	21	25.93
CDH10	0	genome.wustl.edu	37	5	24593471	24593471	+	Missense_Mutation	SNP	C	C	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	5	24593471	24593471	C	A	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.129	p.R43S	0.856	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731	tier1	-	-	48	0	0.00	47	15	24.19
CDH9	0	genome.wustl.edu	37	5	26881567	26881567	+	Missense_Mutation	SNP	C	C	G			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	5	26881567	26881567	C	G	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.2048	p.R683T	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	tier1	-	-	62	0	0.00	56	18	24.32
CENPT	0	genome.wustl.edu	37	16	67866357	67866357	+	Splice_Site	SNP	C	C	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	16	67866357	67866357	C	A	SNP	CENPT	ENST00000219172	human	ensembl	74_37	-1	known	splice_site	c.201+1	e2+1	0.987	-	-	-	no_errors	CENPT	HGNC	ENSG00000102901	tier1	-	-	77	0	0.00	44	18	29.03
CMYA5	0	genome.wustl.edu	37	5	79024876	79024876	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	5	79024876	79024876	G	T	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.288	p.W96C	1.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				60	0	0.00	49	3	5.77
COCH	0	genome.wustl.edu	37	14	31354680	31354680	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	14	31354680	31354680	G	T	SNP	COCH	ENST00000216361	human	ensembl	74_37	+1	known	missense	c.814	p.V272L	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	COCH	HGNC	ENSG00000100473	tier1	-	-	102	0	0.00	55	4	6.67
COL9A3	0	genome.wustl.edu	37	20	61472147	61472147	+	RNA	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	20	61472147	61472147	C	T	SNP	COL9A3	ENST00000462700	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	COL9A3	HGNC	ENSG00000092758	tier1	-	-	50	0	0.00	49	12	19.67
CPA1	0	genome.wustl.edu	37	7	130021558	130021558	+	Missense_Mutation	SNP	C	C	G			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	7	130021558	130021558	C	G	SNP	CPA1	ENST00000011292	human	ensembl	74_37	+1	known	missense	c.235	p.L79V	1.000	pfam_Prot_inh_M14A,superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704	tier1	-	-	76	0	0.00	49	21	30.00
CROCCP2	0	genome.wustl.edu	37	1	16945227	16945227	+	RNA	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	1	16945227	16945227	G	T	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	tier1	rs9728628	-	15	0	0.00	15	9	37.50
CSPP1	0	genome.wustl.edu	37	8	67986506	67986506	+	Nonsense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	8	67986506	67986506	G	T	SNP	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	nonsense	c.127	p.E43*	0.998	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				40	0	0.00	56	3	5.08
DBX2	0	genome.wustl.edu	37	12	45417494	45417494	+	Nonsense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	12	45417494	45417494	G	T	SNP	DBX2	ENST00000332700	human	ensembl	74_37	-1	known	nonsense	c.683	p.S228*	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DBX2	HGNC	ENSG00000185610	tier1	-	-	73	0	0.00	57	5	8.06
DCT	0	genome.wustl.edu	37	13	95114434	95114434	+	Silent	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	13	95114434	95114434	G	A	SNP	DCT	ENST00000446125	human	ensembl	74_37	-1	known	silent	c.873	p.D291	0.991	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	DCT	HGNC	ENSG00000080166	tier1	-	-	73	0	0.00	31	21	40.38
DDX50	0	genome.wustl.edu	37	10	70694630	70694630	+	Missense_Mutation	SNP	C	C	G			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	10	70694630	70694630	C	G	SNP	DDX50	ENST00000373585	human	ensembl	74_37	+1	known	missense	c.1477	p.Q493E	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX50	HGNC	ENSG00000107625	tier1	-	-	34	0	0.00	16	13	44.83
DNAH5	0	genome.wustl.edu	37	5	13928260	13928260	+	Missense_Mutation	SNP	C	C	G			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	5	13928260	13928260	C	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.220	p.V74L	0.757	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	tier1	-	-	32	0	0.00	31	8	20.51
DSEL	0	genome.wustl.edu	37	18	65181701	65181701	+	Missense_Mutation	SNP	C	C	G			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	18	65181701	65181701	C	G	SNP	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	missense	c.175	p.D59H	0.776	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451	tier1	-	-	27	0	0.00	17	5	21.74
DYRK4	0	genome.wustl.edu	37	12	4708255	4708255	+	Missense_Mutation	SNP	C	C	G			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	12	4708255	4708255	C	G	SNP	DYRK4	ENST00000010132	human	ensembl	74_37	+1	known	missense	c.622	p.R208G	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK4	HGNC	ENSG00000010219	tier1	-	-	103	0	0.00	142	10	6.54
EFTUD1	0	genome.wustl.edu	37	15	82554093	82554093	+	Missense_Mutation	SNP	C	C	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	15	82554093	82554093	C	A	SNP	EFTUD1	ENST00000268206	human	ensembl	74_37	-1	known	missense	c.27	p.M9I	0.988	superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_EFG_III-V,superfamily_Transl_B-barrel,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD1	HGNC	ENSG00000140598	tier1	-	-	81	0	0.00	73	4	5.19
EGFR	0	genome.wustl.edu	37	7	55273280	55273280	+	Silent	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	7	55273280	55273280	G	A	SNP	EGFR	ENST00000275493	human	ensembl	74_37	+1	known	silent	c.3603	p.A1201	0.241	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EGFR	HGNC	ENSG00000146648	tier1	rs202156403	-	41	0	0.00	39	13	25.00
EIF2S3	0	genome.wustl.edu	37	X	24075597	24075597	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	X	24075597	24075597	C	T	SNP	EIF2S3	ENST00000253039	human	ensembl	74_37	+1	known	missense	c.193	p.H65Y	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,pfam_TIF2_gsu_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_EF_GTP-bd_dom	-	no_errors	EIF2S3	HGNC	ENSG00000130741	tier1	-	-	65	0	0.00	26	14	35.00
ENSG00000180458	0	genome.wustl.edu	37	19	38039849	38039849	+	RNA	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	19	38039849	38039849	G	A	SNP	ENSG00000180458	ENST00000316807	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CTD-3064H18.4	Clone_based_vega_gene	ENSG00000180458	tier1	-	-	78	0	0.00	94	5	5.05
ENSG00000183562	0	genome.wustl.edu	37	11	3012266	3012266	+	Missense_Mutation	SNP	A	A	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	11	3012266	3012266	A	T	SNP	ENSG00000183562	ENST00000332881	human	ensembl	74_37	+1	known	missense	c.1	p.M1L	0.000	NULL	NULL	-	no_errors	AC131971.1	Clone_based_ensembl_gene	ENSG00000183562	tier1	-	-	16	0	0.00	13	6	31.58
ENSG00000216166	0	genome.wustl.edu	37	3	183520323	183520324	+	RNA	INS	-	-	TA			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	3	183520323	183520324	-	TA	INS	ENSG00000216166	ENST00000401347	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC131160.1	Clone_based_ensembl_gene	ENSG00000216166	tier1			16	0	0.00	14	5	26.32
ENSG00000217825	0	genome.wustl.edu	37	7	154989089	154989089	+	Missense_Mutation	SNP	T	T	C			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	7	154989089	154989089	T	C	SNP	ENSG00000217825	ENST00000431083	human	ensembl	74_37	-1	known	missense	c.47	p.Y16C	0.100	NULL	NULL	-	no_errors	AC099552.4	Clone_based_vega_gene	ENSG00000217825	tier1	-	-	68	0	0.00	41	16	28.07
ENSG00000223678	0	genome.wustl.edu	37	9	33402930	33402931	+	RNA	INS	-	-	G			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	9	33402930	33402931	-	G	INS	ENSG00000223678	ENST00000450864	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-311H10.4	Clone_based_vega_gene	ENSG00000223678	tier1			8	0	0.00	1	3	75.00
ENSG00000224702	0	genome.wustl.edu	37	1	165180170	165180170	+	RNA	SNP	G	G	C			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	1	165180170	165180170	G	C	SNP	ENSG00000224702	ENST00000457106	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-38C18.2	Clone_based_vega_gene	ENSG00000224702	tier1	-	-	13	0	0.00	5	5	50.00
ENSG00000225946	0	genome.wustl.edu	37	7	100608123	100608124	+	RNA	INS	-	-	G			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	7	100608123	100608124	-	G	INS	ENSG00000225946	ENST00000420080	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.037	-	-	-	no_errors	RP11-395B7.2	Clone_based_vega_gene	ENSG00000225946	tier1			18	0	0.00	22	6	21.43
ENSG00000233547	0	genome.wustl.edu	37	10	114710508	114710508	+	RNA	DEL	A	A	-			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	10	114710508	114710508	A	-	DEL	ENSG00000233547	ENST00000369391	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	RP11-57H14.2	Clone_based_vega_gene	ENSG00000233547	tier1			33	0	0.00	28	5	15.15
ENSG00000234864	0	genome.wustl.edu	37	10	43199368	43199368	+	RNA	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	10	43199368	43199368	C	T	SNP	ENSG00000234864	ENST00000439913	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.573	-	-	-	no_errors	AL022344.5	Clone_based_vega_gene	ENSG00000234864	tier1	-	-	46	0	0.00	26	11	29.73
ENSG00000235999	0	genome.wustl.edu	37	1	149291295	149291295	+	RNA	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	1	149291295	149291295	G	A	SNP	ENSG00000235999	ENST00000433084	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	RP11-403I13.8	Clone_based_vega_gene	ENSG00000235999				19	0	0.00	33	3	8.33
ENSG00000257069	0	genome.wustl.edu	37	11	64067761	64067761	+	RNA	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	11	64067761	64067761	C	T	SNP	ENSG00000257069	ENST00000539086	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-783K16.10	Clone_based_vega_gene	ENSG00000257069	tier1	-	-	17	0	0.00	20	5	20.00
ENSG00000259069	0	genome.wustl.edu	37	14	20147023	20147023	+	RNA	SNP	T	T	C			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	14	20147023	20147023	T	C	SNP	ENSG00000259069	ENST00000555580	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-597A11.6	Clone_based_vega_gene	ENSG00000259069	tier1	-	-	173	0	0.00	127	52	29.05
ENSG00000259198	0	genome.wustl.edu	37	15	40605564	40605566	+	RNA	DEL	TTT	TTT	-			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	TTT	TTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	15	40605564	40605566	TTT	-	DEL	ENSG00000259198	ENST00000559030	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014:0.013:0.014	-	-	-	no_errors	RP11-133K1.6	Clone_based_vega_gene	ENSG00000259198	tier1			13	0	0.00	4	2	33.33
EPB41L4A	0	genome.wustl.edu	37	5	111481669	111481669	+	RNA	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	5	111481669	111481669	C	T	SNP	EPB41L4A	ENST00000507810	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EPB41L4A	HGNC	ENSG00000129595	tier1	-	-	90	0	0.00	57	29	33.72
ESPL1	0	genome.wustl.edu	37	12	53668781	53668781	+	Nonsense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	12	53668781	53668781	G	T	SNP	ESPL1	ENST00000257934	human	ensembl	74_37	+1	known	nonsense	c.1687	p.E563*	1.000	NULL	pfam_Peptidase_C50,superfamily_DsrEFH-like	-	no_errors	ESPL1	HGNC	ENSG00000135476	tier1	-	-	48	0	0.00	28	8	22.22
EVPLL	0	genome.wustl.edu	37	17	18292454	18292454	+	RNA	SNP	C	C	G			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	17	18292454	18292454	C	G	SNP	EVPLL	ENST00000583003	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.006	-	-	-	no_errors	EVPLL	HGNC	ENSG00000214860	tier1	rs199697056	-	13	0	0.00	6	3	33.33
EYS	0	genome.wustl.edu	37	6	66005908	66005908	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	6	66005908	66005908	G	A	SNP	EYS	ENST00000370616	human	ensembl	74_37	-1	known	missense	c.1871	p.S624L	0.041	NULL	pfam_Laminin_G,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	tier1	-	-	55	0	0.00	31	11	26.19
FAM154A	0	genome.wustl.edu	37	9	18928750	18928750	+	Missense_Mutation	SNP	T	T	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	9	18928750	18928750	T	A	SNP	FAM154A	ENST00000380534	human	ensembl	74_37	-1	known	missense	c.725	p.Q242L	0.064	NULL	NULL	-	no_errors	FAM154A	HGNC	ENSG00000155875	tier1	-	-	92	0	0.00	89	7	7.29
FAM172A	0	genome.wustl.edu	37	5	93388885	93388885	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	5	93388885	93388885	G	T	SNP	FAM172A	ENST00000395965	human	ensembl	74_37	-1	known	missense	c.154	p.P52T	1.000	NULL	pfam_Arb2_domain	-	no_errors	FAM172A	HGNC	ENSG00000113391	tier1	-	-	78	0	0.00	70	4	5.41
FAM196B	0	genome.wustl.edu	37	5	169310673	169310673	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	5	169310673	169310673	G	T	SNP	FAM196B	ENST00000377365	human	ensembl	74_37	-1	known	missense	c.230	p.P77H	0.919	NULL	NULL	-	no_errors	FAM196B	HGNC	ENSG00000204767	tier1	-	-	75	0	0.00	55	17	23.61
FCRLA	0	genome.wustl.edu	37	1	161681713	161681713	+	RNA	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	1	161681713	161681713	C	T	SNP	FCRLA	ENST00000470841	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FCRLA	HGNC	ENSG00000132185	tier1	-	-	59	0	0.00	47	18	27.69
FRYL	0	genome.wustl.edu	37	4	48559130	48559130	+	Silent	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	4	48559130	48559130	G	T	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	silent	c.4131	p.G1377	0.435	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539	tier1	-	-	43	0	0.00	45	5	10.00
FTSJ3	0	genome.wustl.edu	37	17	61903427	61903427	+	Frame_Shift_Del	DEL	G	G	-			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	17	61903427	61903427	G	-	DEL	FTSJ3	ENST00000427159	human	ensembl	74_37	-1	known	frame_shift_del	c.289	p.R97fs	1.000	pfam_rRNA_MeTrfase_FtsJ_dom	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592	tier1			53	0	0.00	29	6	17.14
GAS6	0	genome.wustl.edu	37	13	114541097	114541097	+	Silent	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	13	114541097	114541097	G	A	SNP	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	silent	c.534	p.F178	0.945	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087	tier1	-	-	168	0	0.00	84	35	29.17
GNAQ	0	genome.wustl.edu	37	9	80646047	80646047	+	Silent	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	9	80646047	80646047	G	A	SNP	GNAQ	ENST00000286548	human	ensembl	74_37	-1	known	silent	c.105	p.D35	1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q,prints_Fungi_Gprotein_alpha	-	no_errors	GNAQ	HGNC	ENSG00000156052				34	0	0.00	29	3	9.38
GRM6	0	genome.wustl.edu	37	5	178408747	178408747	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	5	178408747	178408747	G	T	SNP	GRM6	ENST00000231188	human	ensembl	74_37	-1	known	missense	c.2545	p.Q849K	1.000	pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM6	HGNC	ENSG00000113262	tier1	-	-	75	0	0.00	62	9	12.68
GTF2A2	0	genome.wustl.edu	37	15	59934415	59934415	+	Missense_Mutation	SNP	A	A	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	15	59934415	59934415	A	T	SNP	GTF2A2	ENST00000396060	human	ensembl	74_37	-1	known	missense	c.224	p.V75E	1.000	pfam_TFIIA_gsu_C,superfamily_TFIIA_b-brl,pirsf_TFIIA_gsu	pfam_TFIIA_gsu_C,pfam_TFIIA_gsu_N,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pirsf_TFIIA_gsu	-	no_errors	GTF2A2	HGNC	ENSG00000140307	tier1	-	-	58	0	0.00	62	4	6.06
HAUS5	0	genome.wustl.edu	37	19	36111189	36111189	+	Silent	SNP	C	C	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	19	36111189	36111189	C	A	SNP	HAUS5	ENST00000203166	human	ensembl	74_37	+1	known	silent	c.1611	p.L537	0.006	NULL	NULL	-	no_errors	HAUS5	HGNC	ENSG00000249115	tier1	-	-	78	0	0.00	34	22	39.29
HBS1L	0	genome.wustl.edu	37	6	135357717	135357717	+	Silent	SNP	T	T	C			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	6	135357717	135357717	T	C	SNP	HBS1L	ENST00000367822	human	ensembl	74_37	-1	known	silent	c.1878	p.K626	1.000	NULL	pfam_HBS1-like_N	-	no_errors	HBS1L	HGNC	ENSG00000112339				14	0	0.00	2	4	66.67
HNF4G	0	genome.wustl.edu	37	8	76471212	76471212	+	Missense_Mutation	SNP	T	T	C			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	8	76471212	76471212	T	C	SNP	HNF4G	ENST00000396423	human	ensembl	74_37	+1	known	missense	c.1033	p.F345L	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4G	HGNC	ENSG00000164749	tier1	-	-	47	0	0.00	24	6	20.00
HSPA14	0	genome.wustl.edu	37	10	14884177	14884177	+	RNA	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	10	14884177	14884177	G	A	SNP	HSPA14	ENST00000493178	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSPA14	HGNC	ENSG00000187522	tier1	-	-	15	0	0.00	4	6	60.00
HSPG2	0	genome.wustl.edu	37	1	22169271	22169271	+	Missense_Mutation	SNP	G	G	C			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	1	22169271	22169271	G	C	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.8902	p.R2968G	0.994	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798	tier1	-	-	102	0	0.00	81	18	18.18
HTATIP2	0	genome.wustl.edu	37	11	20385843	20385843	+	Silent	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	11	20385843	20385843	C	T	SNP	HTATIP2	ENST00000419348	human	ensembl	74_37	+1	known	silent	c.162	p.S54	0.407	NULL	pfam_Semialdehyde_DH_NAD-bd	-	no_errors	HTATIP2	HGNC	ENSG00000109854	tier1	-	-	27	0	0.00	25	7	21.88
IL3	0	genome.wustl.edu	37	5	131398418	131398418	+	Silent	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	5	131398418	131398418	G	A	SNP	IL3	ENST00000296870	human	ensembl	74_37	+1	known	silent	c.393	p.T131	0.000	pfam_IL-3,superfamily_4_helix_cytokine-like_core,pirsf_IL-3,prints_IL-3	pfam_IL-3,superfamily_4_helix_cytokine-like_core,pirsf_IL-3,prints_IL-3	-	no_errors	IL3	HGNC	ENSG00000164399	tier1	-	-	42	0	0.00	38	8	17.39
KCNA7	0	genome.wustl.edu	37	19	49574060	49574060	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	19	49574060	49574060	C	T	SNP	KCNA7	ENST00000221444	human	ensembl	74_37	-1	known	missense	c.631	p.V211M	0.976	prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1	-	no_errors	KCNA7	HGNC	ENSG00000104848	tier1	-	-	64	0	0.00	46	26	36.11
KCNB1	0	genome.wustl.edu	37	20	48098775	48098775	+	Silent	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	20	48098775	48098775	G	A	SNP	KCNB1	ENST00000371741	human	ensembl	74_37	-1	known	silent	c.243	p.N81	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv8	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445	tier1	-	-	29	0	0.00	25	25	50.00
KCNJ8	0	genome.wustl.edu	37	12	21918874	21918874	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	12	21918874	21918874	C	T	SNP	KCNJ8	ENST00000240662	human	ensembl	74_37	-1	known	missense	c.1058	p.C353Y	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir6.1	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir6.1	-	no_errors	KCNJ8	HGNC	ENSG00000121361	tier1	-	-	62	0	0.00	33	41	55.41
KHDRBS1	0	genome.wustl.edu	37	1	32508884	32508884	+	RNA	DEL	A	A	-			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	1	32508884	32508884	A	-	DEL	KHDRBS1	ENST00000307714	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	KHDRBS1	HGNC	ENSG00000121774	tier1			25	0	0.00	27	3	10.00
KIAA2026	0	genome.wustl.edu	37	9	5922719	5922719	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	9	5922719	5922719	G	A	SNP	KIAA2026	ENST00000399933	human	ensembl	74_37	-1	novel	missense	c.3277	p.P1093S	0.999	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354	tier1	-	-	50	0	0.00	26	15	36.59
KRT13	0	genome.wustl.edu	37	17	39657566	39657566	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	17	39657566	39657566	G	A	SNP	KRT13	ENST00000246635	human	ensembl	74_37	-1	known	missense	c.1319	p.S440F	0.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT13	HGNC	ENSG00000171401	tier1	-	-	62	0	0.00	43	4	8.51
KRTAP13-2	0	genome.wustl.edu	37	21	31744251	31744251	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	21	31744251	31744251	G	A	SNP	KRTAP13-2	ENST00000399889	human	ensembl	74_37	-1	known	missense	c.281	p.T94M	0.000	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP13-2	HGNC	ENSG00000182816	tier1	-	-	101	0	0.00	55	26	32.10
LIMCH1	0	genome.wustl.edu	37	4	41621228	41621228	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	4	41621228	41621228	G	A	SNP	LIMCH1	ENST00000503057	human	ensembl	74_37	+1	known	missense	c.229	p.D77N	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMCH1	HGNC	ENSG00000064042				47	0	0.00	55	5	8.33
LMOD3	0	genome.wustl.edu	37	3	69171403	69171403	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	3	69171403	69171403	G	T	SNP	LMOD3	ENST00000420581	human	ensembl	74_37	-1	known	missense	c.135	p.D45E	1.000	pfam_Tropomodulin	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380				72	0	0.00	52	4	7.14
LOC100190940	0	genome.wustl.edu	37	12	130521279	130521280	+	RNA	INS	-	-	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	12	130521279	130521280	-	A	INS	LOC100190940	ENST00000291374	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.436:0.532	-	-	-	no_errors	RP11-474D1.3	Clone_based_vega_gene	ENSG00000214039	tier1			26	0	0.00	16	7	30.43
LOC101928303	0	genome.wustl.edu	37	1	26551855	26551855	+	RNA	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	1	26551855	26551855	G	A	SNP	LOC101928303	ENST00000451482	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-231P20.2	Clone_based_vega_gene	ENSG00000236155	tier1	-	-	12	0	0.00	6	7	53.85
LOC101928521	0	genome.wustl.edu	37	4	647448	647448	+	RNA	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	4	647448	647448	C	T	SNP	LOC101928521	ENST00000468356	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-1191J2.2	Clone_based_vega_gene	ENSG00000242686	tier1	-	-	38	0	0.00	12	38	76.00
LRRC15	0	genome.wustl.edu	37	3	194080470	194080470	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	3	194080470	194080470	G	A	SNP	LRRC15	ENST00000439944	human	ensembl	74_37	-1	known	missense	c.1321	p.R441C	0.421	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061	tier1	-	-	43	0	0.00	44	14	24.14
MARCO	0	genome.wustl.edu	37	2	119727700	119727700	+	Silent	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	2	119727700	119727700	G	T	SNP	MARCO	ENST00000327097	human	ensembl	74_37	+1	known	silent	c.210	p.L70	1.000	NULL	pfam_Collagen,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	MARCO	HGNC	ENSG00000019169	tier1	-	-	18	0	0.00	11	5	31.25
MGA	0	genome.wustl.edu	37	15	42058227	42058227	+	Silent	SNP	A	A	C			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	15	42058227	42058227	A	C	SNP	MGA	ENST00000219905	human	ensembl	74_37	+1	known	silent	c.7947	p.P2649	1.000	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	tier1	-	-	32	0	0.00	24	12	33.33
MIOX	0	genome.wustl.edu	37	22	50927860	50927860	+	Missense_Mutation	SNP	C	C	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	22	50927860	50927860	C	A	SNP	MIOX	ENST00000216075	human	ensembl	74_37	+1	known	missense	c.621	p.F207L	1.000	pfam_Inositol_oxygenase	pfam_Inositol_oxygenase	-	no_errors	MIOX	HGNC	ENSG00000100253	tier1	-	-	84	0	0.00	35	19	35.19
MROH2A	0	genome.wustl.edu	37	2	234703137	234703137	+	Silent	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	2	234703137	234703137	G	T	SNP	MROH2A	ENST00000389758	human	ensembl	74_37	+1	novel	silent	c.951	p.V317	0.155	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2A	HGNC	ENSG00000185038	tier1	-	-	73	0	0.00	56	20	26.32
MSH4	0	genome.wustl.edu	37	1	76346962	76346962	+	Nonsense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	1	76346962	76346962	G	T	SNP	MSH4	ENST00000263187	human	ensembl	74_37	+1	known	nonsense	c.1813	p.E605*	1.000	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH4	HGNC	ENSG00000057468	tier1	-	-	182	0	0.00	163	9	5.23
MST1	0	genome.wustl.edu	37	3	49723526	49723526	+	Silent	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	3	49723526	49723526	G	T	SNP	MST1	ENST00000449682	human	ensembl	74_37	-1	known	silent	c.1116	p.I372	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531				53	0	0.00	26	2	7.14
MT-ATP6	0	genome.wustl.edu	37	MT	8980	8980	+	Nonsense_Mutation	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	MT	8980	8980	C	T	SNP	MT-ATP6	ENST00000361899	human	ensembl	74_37	+1	known	nonsense	c.454	p.Q152*	NULL	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,prints_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,prints_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	-	no_errors	MT-ATP6	HGNC	ENSG00000198899	tier1	-	-	75	0	0.00	10	2	16.67
MT-ND4L	0	genome.wustl.edu	37	MT	10673	10673	+	Silent	SNP	C	C	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	MT	10673	10673	C	A	SNP	MT-ND4L	ENST00000361335	human	ensembl	74_37	+1	known	silent	c.204	p.A68	NULL	pfam_NADH_UbQ_OxRdtase_chain4L/K	pfam_NADH_UbQ_OxRdtase_chain4L/K	-	no_errors	MT-ND4L	HGNC	ENSG00000212907	tier1	-	-	103	0	0.00	8	2	20.00
MT-RNR2	0	genome.wustl.edu	37	MT	3091	3091	+	RNA	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	MT	3091	3091	G	A	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082				94	0	0.00	22	3	12.00
NANOGP1	0	genome.wustl.edu	37	12	8051567	8051567	+	RNA	SNP	C	C	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	12	8051567	8051567	C	A	SNP	NANOGP1	ENST00000607111	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	NANOGP1	HGNC	ENSG00000176654	tier1	-	-	134	0	0.00	200	22	9.91
NBPF14	0	genome.wustl.edu	37	1	148015634	148015634	+	Missense_Mutation	SNP	T	T	C			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	1	148015634	148015634	T	C	SNP	NBPF14	ENST00000369219	human	ensembl	74_37	-1	known	missense	c.997	p.N333D	0.002	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF14	HGNC	ENSG00000122497				28	0	0.00	21	2	8.70
NOTCH1	0	genome.wustl.edu	37	9	139413231	139413231	+	Frame_Shift_Del	DEL	T	T	-			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	9	139413231	139413231	T	-	DEL	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	frame_shift_del	c.911	p.N304fs	1.000	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_Notch,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	tier1			156	0	0.00	46	69	60.00
NPAS4	0	genome.wustl.edu	37	11	66191454	66191454	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	11	66191454	66191454	G	A	SNP	NPAS4	ENST00000311034	human	ensembl	74_37	+1	known	missense	c.1093	p.A365T	0.042	NULL	pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576	tier1	-	-	24	0	0.00	18	10	34.48
NYX	0	genome.wustl.edu	37	X	41332755	41332755	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	X	41332755	41332755	G	A	SNP	NYX	ENST00000342595	human	ensembl	74_37	+1	known	missense	c.49	p.G17S	0.186	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	NYX	HGNC	ENSG00000188937				36	0	0.00	13	6	31.58
OR10G8	0	genome.wustl.edu	37	11	123900990	123900990	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	11	123900990	123900990	G	A	SNP	OR10G8	ENST00000431524	human	ensembl	74_37	+1	known	missense	c.661	p.V221I	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G8	HGNC	ENSG00000234560	tier1	-	-	188	0	0.00	93	44	32.12
OR51G2	0	genome.wustl.edu	37	11	4936269	4936269	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	11	4936269	4936269	C	T	SNP	OR51G2	ENST00000322013	human	ensembl	74_37	-1	known	missense	c.625	p.V209I	0.003	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G2	HGNC	ENSG00000176893	tier1	-	-	46	0	0.00	36	9	20.00
PDZD2	0	genome.wustl.edu	37	5	32090983	32090983	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	5	32090983	32090983	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.7429	p.V2477M	0.008	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	tier1	-	-	30	0	0.00	37	10	21.28
PKD1L2	0	genome.wustl.edu	37	16	81209275	81209275	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	16	81209275	81209275	G	T	SNP	PKD1L2	ENST00000337114	human	ensembl	74_37	-1	known	missense	c.2518	p.L840M	0.180	pfam_PKD/REJ-like,superfamily_Coatomer/clathrin_app_Ig-like,pfscan_REJ-like	pfam_Lectin_gal-bd_dom,pfam_C-type_lectin,pfam_PKD/REJ-like,superfamily_C-type_lectin_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_PKD_dom,smart_C-type_lectin,pfscan_C-type_lectin,pfscan_Lectin_gal-bd_dom,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473				47	0	0.00	37	2	5.13
PLBD1	0	genome.wustl.edu	37	12	14706313	14706313	+	Missense_Mutation	SNP	G	G	C			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	12	14706313	14706313	G	C	SNP	PLBD1	ENST00000240617	human	ensembl	74_37	-1	known	missense	c.149	p.A50G	0.000	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD1	HGNC	ENSG00000121316	tier1	-	-	42	0	0.00	47	31	39.74
PLG	0	genome.wustl.edu	37	6	161139850	161139850	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	6	161139850	161139850	C	T	SNP	PLG	ENST00000308192	human	ensembl	74_37	+1	known	missense	c.1076	p.T359M	0.000	pirsf_Pept_S1A_plasmin,superfamily_Kringle-like	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	PLG	HGNC	ENSG00000122194	tier1	-	-	56	0	0.00	34	16	32.00
POMP	0	genome.wustl.edu	37	13	29252307	29252307	+	RNA	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	13	29252307	29252307	G	T	SNP	POMP	ENST00000460403	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.959	-	-	-	no_errors	POMP	HGNC	ENSG00000132963	tier1	-	-	47	0	0.00	37	4	9.76
PRKG2	0	genome.wustl.edu	37	4	82065482	82065482	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	4	82065482	82065482	G	T	SNP	PRKG2	ENST00000264399	human	ensembl	74_37	-1	known	missense	c.1157	p.T386K	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,prints_cGMP_dep_kinase	pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669	tier1	-	-	38	0	0.00	42	4	8.70
PTPRD	0	genome.wustl.edu	37	9	8486299	8486299	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	9	8486299	8486299	G	T	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	missense	c.2518	p.L840I	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	tier1	-	-	59	0	0.00	27	11	28.95
RAB3C	0	genome.wustl.edu	37	5	57913496	57913496	+	Silent	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	5	57913496	57913496	C	T	SNP	RAB3C	ENST00000282878	human	ensembl	74_37	+1	known	silent	c.51	p.Y17	0.999	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3C	HGNC	ENSG00000152932	tier1	-	-	29	0	0.00	16	13	44.83
RIN1	0	genome.wustl.edu	37	11	66103267	66103267	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	11	66103267	66103267	G	A	SNP	RIN1	ENST00000530745	human	ensembl	74_37	-1	known	missense	c.167	p.S56L	0.772	NULL	NULL	-	no_errors	RIN1	HGNC	ENSG00000174791	tier1	-	-	59	0	0.00	39	10	20.41
SCUBE1	0	genome.wustl.edu	37	22	43617211	43617211	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	22	43617211	43617211	C	T	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	missense	c.1517	p.R506Q	0.048	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307	tier1	rs140525929	-	210	0	0.00	48	38	44.19
SETX	0	genome.wustl.edu	37	9	135153554	135153554	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	9	135153554	135153554	G	T	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	missense	c.6745	p.L2249M	0.024	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				33	0	0.00	35	2	5.41
SIGLEC1	0	genome.wustl.edu	37	20	3672113	3672113	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	20	3672113	3672113	G	A	SNP	SIGLEC1	ENST00000344754	human	ensembl	74_37	-1	known	missense	c.4465	p.H1489Y	0.001	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC1	HGNC	ENSG00000088827	tier1	-	-	53	0	0.00	56	26	31.71
SLC36A3	0	genome.wustl.edu	37	5	150660711	150660711	+	Silent	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	5	150660711	150660711	G	A	SNP	SLC36A3	ENST00000377713	human	ensembl	74_37	-1	known	silent	c.1131	p.I377	0.005	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A3	HGNC	ENSG00000186334	tier1	-	-	47	0	0.00	52	11	17.46
SLCO1A2	0	genome.wustl.edu	37	12	21457384	21457384	+	Missense_Mutation	SNP	A	A	G			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	12	21457384	21457384	A	G	SNP	SLCO1A2	ENST00000307378	human	ensembl	74_37	-1	known	missense	c.566	p.F189S	0.985	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1A2	HGNC	ENSG00000084453	tier1	-	-	38	0	0.00	45	14	23.73
SRPK1	0	genome.wustl.edu	37	6	35837431	35837434	+	Frame_Shift_Del	DEL	AGAG	AGAG	-			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	AGAG	AGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	6	35837431	35837434	AGAG	-	DEL	SRPK1	ENST00000373825	human	ensembl	74_37	-1	known	frame_shift_del	c.1239_1236	p.S413fs	1.000:1.000:1.000:1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK1	HGNC	ENSG00000096063	tier1			98	0	0.00	61	19	23.75
SUSD4	0	genome.wustl.edu	37	1	223408377	223408377	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	1	223408377	223408377	G	A	SNP	SUSD4	ENST00000344029	human	ensembl	74_37	-1	known	missense	c.790	p.L264F	0.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD4	HGNC	ENSG00000143502	tier1	-	-	54	0	0.00	11	23	67.65
THNSL2	0	genome.wustl.edu	37	2	88474919	88474919	+	Silent	SNP	A	A	G			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	2	88474919	88474919	A	G	SNP	THNSL2	ENST00000324166	human	ensembl	74_37	+1	known	silent	c.570	p.G190	0.998	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Thr_synthase_like	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Thr_synthase_like	-	no_errors	THNSL2	HGNC	ENSG00000144115	tier1	-	-	94	0	0.00	79	20	20.20
TLR10	0	genome.wustl.edu	37	4	38775539	38775539	+	Missense_Mutation	SNP	T	T	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	4	38775539	38775539	T	A	SNP	TLR10	ENST00000308973	human	ensembl	74_37	-1	known	missense	c.1673	p.N558I	0.003	pirsf_Toll-like_receptor,smart_Cys-rich_flank_reg_C	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR10	HGNC	ENSG00000174123	tier1	-	-	41	0	0.00	94	20	17.54
TP53	0	genome.wustl.edu	37	17	7577105	7577105	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	17	7577105	7577105	G	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.833	p.P278H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	42	0	0.00	7	29	80.56
TRHDE	0	genome.wustl.edu	37	12	72680484	72680484	+	Missense_Mutation	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	12	72680484	72680484	C	T	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	missense	c.803	p.S268L	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657	tier1	-	-	49	0	0.00	39	21	35.00
TRIM54	0	genome.wustl.edu	37	2	27529352	27529352	+	Silent	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	2	27529352	27529352	C	T	SNP	TRIM54	ENST00000296098	human	ensembl	74_37	+1	known	silent	c.1146	p.A382	0.000	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_Chorismate_mutase_type_II,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM54	HGNC	ENSG00000138100	tier1	-	-	94	0	0.00	72	23	23.96
UBQLN3	0	genome.wustl.edu	37	11	5529807	5529807	+	Missense_Mutation	SNP	C	C	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	11	5529807	5529807	C	A	SNP	UBQLN3	ENST00000311659	human	ensembl	74_37	-1	known	missense	c.982	p.D328Y	0.248	NULL	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN3	HGNC	ENSG00000175520	tier1	-	-	27	0	0.00	26	12	31.58
VPS9D1-AS1	0	genome.wustl.edu	37	16	89783106	89783106	+	RNA	SNP	C	C	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	16	89783106	89783106	C	T	SNP	VPS9D1-AS1	ENST00000562866	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS9D1-AS1	HGNC	ENSG00000261373	tier1	-	-	64	0	0.00	46	10	17.86
ZDHHC1	0	genome.wustl.edu	37	16	67440127	67440127	+	Silent	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	16	67440127	67440127	G	A	SNP	ZDHHC1	ENST00000348579	human	ensembl	74_37	-1	known	silent	c.228	p.H76	0.997	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC1	HGNC	ENSG00000159714	tier1	-	-	53	0	0.00	41	18	30.51
ZFHX4	0	genome.wustl.edu	37	8	77775833	77775833	+	Missense_Mutation	SNP	A	A	G			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	8	77775833	77775833	A	G	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.9883	p.S3295G	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				35	0	0.00	35	4	10.26
ZNF775	0	genome.wustl.edu	37	7	150095050	150095050	+	Missense_Mutation	SNP	G	G	T			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	7	150095050	150095050	G	T	SNP	ZNF775	ENST00000329630	human	ensembl	74_37	+1	known	missense	c.1481	p.R494L	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF775	HGNC	ENSG00000196456	tier1	-	-	29	0	0.00	12	18	60.00
ZNF804B	0	genome.wustl.edu	37	7	88962883	88962883	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	7	88962883	88962883	G	A	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.587	p.R196H	0.077	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	tier1	-	-	20	0	0.00	12	11	47.83
ZNF831	0	genome.wustl.edu	37	20	57766999	57766999	+	Missense_Mutation	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	20	57766999	57766999	G	A	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.925	p.A309T	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				32	0	0.00	58	8	12.12
ZNF833P	0	genome.wustl.edu	37	19	11759238	11759238	+	RNA	SNP	G	G	A			TCGA-IG-A5S3-01A-11D-A28B-09	TCGA-IG-A5S3-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63fe54fd-11df-4cdc-88a7-bb109a7538f3	7f7a6dc2-630a-4ae3-be7d-c4153ea50472	19	11759238	11759238	G	A	SNP	ZNF833P	ENST00000344893	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ZNF833P	HGNC	ENSG00000197332	tier1	-	-	159	0	0.00	30	36	54.55
