Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AATF	0	genome.wustl.edu	37	17	35346670	35346670	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	17	35346670	35346670	C	A	SNP	AATF	ENST00000225402	human	ensembl	74_37	+1	known	missense	c.1274	p.P425Q	0.000	NULL	pfam_AATF_C	-	no_errors	AATF	HGNC	ENSG00000108270	tier1	-	-	49	0	0.00	32	5	13.51
ABT1	0	genome.wustl.edu	37	6	26598526	26598526	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	6	26598526	26598526	G	T	SNP	ABT1	ENST00000274849	human	ensembl	74_37	+1	known	nonsense	c.472	p.E158*	1.000	NULL	NULL	-	no_errors	ABT1	HGNC	ENSG00000146109				49	0	0.00	38	2	5.00
ADAMTS19	0	genome.wustl.edu	37	5	129072844	129072844	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	5	129072844	129072844	G	A	SNP	ADAMTS19	ENST00000274487	human	ensembl	74_37	+1	known	missense	c.3557	p.R1186Q	1.000	pfam_PLAC,pfscan_PLAC	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808	tier1	-	-	62	0	0.00	49	6	10.91
ADAMTS6	0	genome.wustl.edu	37	5	64468749	64468749	+	Missense_Mutation	SNP	T	T	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	5	64468749	64468749	T	A	SNP	ADAMTS6	ENST00000381055	human	ensembl	74_37	-1	known	missense	c.2997	p.Q999H	0.056	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192	tier1	-	-	54	0	0.00	40	6	13.04
ADCY7	0	genome.wustl.edu	37	16	50342672	50342672	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	16	50342672	50342672	G	A	SNP	ADCY7	ENST00000254235	human	ensembl	74_37	+1	known	missense	c.2030	p.G677D	0.962	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	tier1	-	-	93	0	0.00	85	5	5.56
ADRA1A	0	genome.wustl.edu	37	8	26721788	26721788	+	Silent	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	8	26721788	26721788	C	T	SNP	ADRA1A	ENST00000380586	human	ensembl	74_37	-1	known	silent	c.699	p.T233	0.969	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1A_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1A	HGNC	ENSG00000120907	tier1	-	-	40	0	0.00	44	4	8.33
ANAPC5	0	genome.wustl.edu	37	12	121783796	121783796	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	121783796	121783796	G	T	SNP	ANAPC5	ENST00000261819	human	ensembl	74_37	-1	known	missense	c.436	p.L146I	1.000	NULL	smart_TPR_repeat	-	no_errors	ANAPC5	HGNC	ENSG00000089053	tier1	-	-	72	0	0.00	51	4	7.27
ANKRD27	0	genome.wustl.edu	37	19	33130348	33130348	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	19	33130348	33130348	C	A	SNP	ANKRD27	ENST00000306065	human	ensembl	74_37	-1	known	missense	c.1030	p.A344S	0.365	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	tier1	-	-	51	0	0.00	62	4	6.06
ANKRD50	0	genome.wustl.edu	37	4	125599956	125599956	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	4	125599956	125599956	G	A	SNP	ANKRD50	ENST00000504087	human	ensembl	74_37	-1	known	missense	c.617	p.T206M	0.142	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD50	HGNC	ENSG00000151458	tier1	-	-	26	0	0.00	31	4	11.43
ANKRD52	0	genome.wustl.edu	37	12	56649607	56649607	+	Silent	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	56649607	56649607	G	A	SNP	ANKRD52	ENST00000267116	human	ensembl	74_37	-1	known	silent	c.423	p.R141	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD52	HGNC	ENSG00000139645				57	0	0.00	66	5	7.04
ARHGEF7	0	genome.wustl.edu	37	13	111935432	111935432	+	RNA	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	13	111935432	111935432	G	T	SNP	ARHGEF7	ENST00000491688	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARHGEF7	HGNC	ENSG00000102606	tier1	-	-	72	0	0.00	43	4	8.51
ARID1A	0	genome.wustl.edu	37	1	27106648	27106648	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	27106648	27106648	G	A	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.6259	p.G2087R	1.000	pfam_DUF3518	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	tier1	-	-	53	0	0.00	26	5	16.13
ARL11	0	genome.wustl.edu	37	13	50204836	50204836	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	13	50204836	50204836	G	A	SNP	ARL11	ENST00000282026	human	ensembl	74_37	+1	known	missense	c.253	p.V85M	0.247	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL11	HGNC	ENSG00000152213				37	0	0.00	23	3	11.54
ASCL1	0	genome.wustl.edu	37	12	103352171	103352172	+	In_Frame_Ins	INS	-	-	GCA			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	103352171	103352172	-	GCA	INS	ASCL1	ENST00000266744	human	ensembl	74_37	+1	known	in_frame_ins	c.149_150	p.54in_frame_insQ	0.997:0.997	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ASCL1	HGNC	ENSG00000139352	tier1			17	0	0.00	10	4	28.57
ASTE1	0	genome.wustl.edu	37	3	130733046	130733047	+	Frame_Shift_Ins	INS	-	-	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	3	130733046	130733047	-	T	INS	ASTE1	ENST00000264992	human	ensembl	74_37	-1	known	frame_shift_ins	c.1895_1894	p.R632fs	0.003:0.014	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533	tier1			51	0	0.00	38	4	9.52
ATM	0	genome.wustl.edu	37	11	108155199	108155199	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	11	108155199	108155199	A	G	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.3992	p.Q1331R	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	tier1	-	-	43	0	0.00	38	4	9.52
ATP2C1	0	genome.wustl.edu	37	3	130672735	130672735	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	3	130672735	130672735	C	T	SNP	ATP2C1	ENST00000393221	human	ensembl	74_37	+1	known	missense	c.704	p.P235L	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C1	HGNC	ENSG00000017260	tier1	-	-	50	0	0.00	44	4	8.33
BAHCC1	0	genome.wustl.edu	37	17	79428891	79428891	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	17	79428891	79428891	G	T	SNP	BAHCC1	ENST00000307745	human	ensembl	74_37	+1	known	missense	c.7202	p.G2401V	0.007	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	RP11-1055B8.7	Clone_based_vega_gene	ENSG00000171282	tier1	-	-	96	0	0.00	61	5	7.58
BOD1L1	0	genome.wustl.edu	37	4	13615149	13615149	+	Silent	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	4	13615149	13615149	C	T	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	silent	c.1311	p.E437	1.000	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				34	0	0.00	34	2	5.56
BTBD10	0	genome.wustl.edu	37	11	13410443	13410443	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	11	13410443	13410443	G	A	SNP	BTBD10	ENST00000278174	human	ensembl	74_37	-1	known	missense	c.1363	p.L455F	1.000	NULL	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	BTBD10	HGNC	ENSG00000148925				45	0	0.00	33	2	5.71
C12orf54	0	genome.wustl.edu	37	12	48882278	48882279	+	RNA	INS	-	-	AAC			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	48882278	48882279	-	AAC	INS	C12orf54	ENST00000548913	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.033:0.007	-	-	-	no_errors	C12orf54	HGNC	ENSG00000177627	tier1			25	0	0.00	22	3	12.00
C16orf62	0	genome.wustl.edu	37	16	19663298	19663298	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	16	19663298	19663298	G	T	SNP	C16orf62	ENST00000438132	human	ensembl	74_37	+1	known	missense	c.2374	p.A792S	1.000	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544	tier1	-	-	46	0	0.00	49	4	7.55
C1orf147	0	genome.wustl.edu	37	1	206666242	206666242	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	206666242	206666242	G	T	SNP	C1orf147	ENST00000367119	human	ensembl	74_37	-1	known	missense	c.292	p.L98I	0.000	NULL	NULL	-	no_errors	C1orf147	HGNC	ENSG00000162888	tier1	-	-	60	0	0.00	40	4	8.89
C20orf203	0	genome.wustl.edu	37	20	31238642	31238642	+	RNA	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	20	31238642	31238642	G	A	SNP	C20orf203	ENST00000360785	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C20orf203	HGNC	ENSG00000198547	tier1	-	-	87	0	0.00	93	7	7.00
C9orf41	0	genome.wustl.edu	37	9	77632354	77632354	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	9	77632354	77632354	G	A	SNP	C9orf41	ENST00000376834	human	ensembl	74_37	-1	known	missense	c.241	p.H81Y	1.000	NULL	pfam_N2227	-	no_errors	C9orf41	HGNC	ENSG00000156017				73	0	0.00	69	4	5.48
C9orf9	0	genome.wustl.edu	37	9	135759394	135759394	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	9	135759394	135759394	G	T	SNP	C9orf9	ENST00000356311	human	ensembl	74_37	+1	known	missense	c.60	p.Q20H	1.000	NULL	NULL	-	no_errors	C9orf9	HGNC	ENSG00000165698	tier1	-	-	49	0	0.00	42	4	8.70
CACNA1E	0	genome.wustl.edu	37	1	181684509	181684509	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	181684509	181684509	G	T	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	nonsense	c.1207	p.G403*	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				42	0	0.00	49	4	7.55
CCDC13	0	genome.wustl.edu	37	3	42771960	42771960	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	3	42771960	42771960	G	A	SNP	CCDC13	ENST00000310232	human	ensembl	74_37	-1	known	missense	c.1717	p.R573W	1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC13	HGNC	ENSG00000244607	tier1	rs200289473	-	65	0	0.00	57	5	8.06
CCDC40	0	genome.wustl.edu	37	17	78055517	78055517	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	17	78055517	78055517	C	A	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.1735	p.L579M	0.865	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				42	0	0.00	34	2	5.56
CCDC67	0	genome.wustl.edu	37	11	93118682	93118682	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	11	93118682	93118682	G	T	SNP	CCDC67	ENST00000298050	human	ensembl	74_37	+1	known	missense	c.908	p.C303F	0.447	NULL	superfamily_MHC_II-assoc_invariant_trimer	-	no_errors	CCDC67	HGNC	ENSG00000165325	tier1	-	-	61	0	0.00	54	4	6.90
CCDC77	0	genome.wustl.edu	37	12	527717	527717	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	527717	527717	G	T	SNP	CCDC77	ENST00000239830	human	ensembl	74_37	+1	known	missense	c.328	p.A110S	1.000	NULL	NULL	-	no_errors	CCDC77	HGNC	ENSG00000120647	tier1	-	-	66	0	0.00	59	4	6.15
CCDC88C	0	genome.wustl.edu	37	14	91770137	91770137	+	Silent	SNP	T	T	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	14	91770137	91770137	T	C	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	silent	c.3543	p.Q1181	1.000	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				42	0	0.00	55	5	8.33
CCER1	0	genome.wustl.edu	37	12	91348412	91348412	+	Silent	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	91348412	91348412	C	T	SNP	CCER1	ENST00000358859	human	ensembl	74_37	-1	known	silent	c.108	p.S36	0.057	NULL	NULL	-	no_errors	CCER1	HGNC	ENSG00000197651				34	0	0.00	27	4	12.90
CD96	0	genome.wustl.edu	37	3	111319605	111319605	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	3	111319605	111319605	A	G	SNP	CD96	ENST00000283285	human	ensembl	74_37	+1	known	missense	c.979	p.K327E	0.000	pfscan_Ig-like_dom	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD96	HGNC	ENSG00000153283	tier1	-	-	56	0	0.00	36	4	10.00
CLIP4	0	genome.wustl.edu	37	2	29356672	29356672	+	Silent	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	29356672	29356672	G	A	SNP	CLIP4	ENST00000320081	human	ensembl	74_37	+1	known	silent	c.519	p.S173	0.216	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295	tier1	rs150045383	-	83	0	0.00	75	4	5.06
CNPY4	0	genome.wustl.edu	37	7	99717419	99717419	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	7	99717419	99717419	G	T	SNP	CNPY4	ENST00000262932	human	ensembl	74_37	+1	known	nonsense	c.52	p.E18*	0.004	NULL	pfam_DUF3456	-	no_errors	CNPY4	HGNC	ENSG00000166997				70	0	0.00	51	3	5.56
CTTNBP2NL	0	genome.wustl.edu	37	1	112998846	112998846	+	Silent	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	112998846	112998846	C	T	SNP	CTTNBP2NL	ENST00000271277	human	ensembl	74_37	+1	known	silent	c.732	p.I244	0.310	NULL	pfam_Cortactin-binding_p2_N	-	no_errors	CTTNBP2NL	HGNC	ENSG00000143079				34	0	0.00	38	2	5.00
DAB2IP	0	genome.wustl.edu	37	9	124535012	124535012	+	Silent	SNP	T	T	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	9	124535012	124535012	T	C	SNP	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	silent	c.2205	p.P735	0.604	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848				66	0	0.00	58	4	6.45
DACH1	0	genome.wustl.edu	37	13	72255964	72255964	+	Silent	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	13	72255964	72255964	G	T	SNP	DACH1	ENST00000359684	human	ensembl	74_37	-1	known	silent	c.933	p.V311	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659	tier1	-	-	72	0	0.00	56	4	6.67
DCC	0	genome.wustl.edu	37	18	51013172	51013172	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	18	51013172	51013172	G	A	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.3742	p.V1248M	0.999	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				71	0	0.00	46	3	6.12
DCHS2	0	genome.wustl.edu	37	4	155155708	155155708	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	4	155155708	155155708	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.8731	p.E2911K	1.000	NULL	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	tier1	-	-	44	0	0.00	37	4	9.76
DCTN1	0	genome.wustl.edu	37	2	74596337	74596337	+	Missense_Mutation	SNP	A	A	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	74596337	74596337	A	T	SNP	DCTN1	ENST00000361874	human	ensembl	74_37	-1	known	missense	c.1589	p.V530E	1.000	pfam_Dynactin,superfamily_P-loop_NTPase	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,superfamily_P-loop_NTPase,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843				75	0	0.00	69	4	5.41
DENND4B	0	genome.wustl.edu	37	1	153914579	153914579	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	153914579	153914579	G	T	SNP	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	missense	c.821	p.A274D	0.984	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	tier1	-	-	84	0	0.00	69	4	5.48
DIAPH1	0	genome.wustl.edu	37	5	140896575	140896575	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	5	140896575	140896575	G	A	SNP	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	missense	c.3665	p.A1222V	0.998	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504	tier1	-	-	27	0	0.00	33	4	10.81
DLX5	0	genome.wustl.edu	37	7	96650277	96650277	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	7	96650277	96650277	G	T	SNP	DLX5	ENST00000222598	human	ensembl	74_37	-1	known	missense	c.641	p.A214E	1.000	NULL	pfam_Distal-less_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX5	HGNC	ENSG00000105880				68	0	0.00	56	3	5.08
DNAH17	0	genome.wustl.edu	37	17	76562801	76562801	+	Silent	SNP	A	A	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	17	76562801	76562801	A	G	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	silent	c.1464	p.R488	0.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				45	0	0.00	44	4	8.16
DNM1P46	0	genome.wustl.edu	37	15	100340361	100340361	+	RNA	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	15	100340361	100340361	G	A	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397	tier1	-	-	47	0	0.00	64	7	9.86
DSCAM	0	genome.wustl.edu	37	21	42080670	42080670	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	21	42080670	42080670	A	G	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.71	p.L24P	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587	tier1	-	-	39	0	0.00	29	4	12.12
EBF4	0	genome.wustl.edu	37	20	2686660	2686660	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	20	2686660	2686660	G	A	SNP	EBF4	ENST00000380648	human	ensembl	74_37	+1	known	missense	c.323	p.R108H	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF4	HGNC	ENSG00000088881	tier1	-	-	39	0	0.00	47	9	16.07
EDIL3	0	genome.wustl.edu	37	5	83402504	83402504	+	Nonsense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	5	83402504	83402504	C	T	SNP	EDIL3	ENST00000296591	human	ensembl	74_37	-1	known	nonsense	c.614	p.W205*	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,pfam_EGF_extracell,superfamily_Galactose-bd-like,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	EDIL3	HGNC	ENSG00000164176	tier1	-	-	73	0	0.00	76	4	5.00
EFCAB1	0	genome.wustl.edu	37	8	49647703	49647703	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	8	49647703	49647703	C	T	SNP	EFCAB1	ENST00000262103	human	ensembl	74_37	-1	known	missense	c.8	p.R3H	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	EFCAB1	HGNC	ENSG00000034239				73	0	0.00	56	4	6.67
EIF2A	0	genome.wustl.edu	37	3	150280436	150280436	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	3	150280436	150280436	A	G	SNP	EIF2A	ENST00000460851	human	ensembl	74_37	+1	known	missense	c.281	p.Q94R	1.000	pirsf_TIF2A	pfam_TIF_beta_prop-like,pirsf_TIF2A	-	no_errors	EIF2A	HGNC	ENSG00000144895	tier1	-	-	61	0	0.00	40	4	9.09
ENSG00000226668	0	genome.wustl.edu	37	9	95644924	95644924	+	RNA	SNP	A	A	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	9	95644924	95644924	A	G	SNP	ENSG00000226668	ENST00000411450	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-526D8.7	Clone_based_vega_gene	ENSG00000226668	tier1	-	-	365	0	0.00	410	25	5.75
ENSG00000235704	0	genome.wustl.edu	37	22	20378616	20378628	+	RNA	DEL	GGGATCCGGGGGT	GGGATCCGGGGGT	-			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	GGGATCCGGGGGT	GGGATCCGGGGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	22	20378616	20378628	GGGATCCGGGGGT	0	DEL	ENSG00000235704	ENST00000426653	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009:0.014:0.006:0.004:0.011:0.028:0.217:0.219:0.178:0.177:0.193:0.194:0.213	-	-	-	no_errors	AC023490.2	Clone_based_vega_gene	ENSG00000235704				28	0	0.00	43	8	15.69
ENSG00000253200	0	genome.wustl.edu	37	8	22472281	22472281	+	RNA	SNP	A	A	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	8	22472281	22472281	A	T	SNP	ENSG00000253200	ENST00000521025	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-582J16.5	Clone_based_vega_gene	ENSG00000253200	tier1	rs113423385	-	19	0	0.00	11	5	31.25
ENSG00000260411	0	genome.wustl.edu	37	16	5289918	5289918	+	RNA	SNP	A	A	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	16	5289918	5289918	A	C	SNP	ENSG00000260411	ENST00000569895	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.819	-	-	-	no_errors	RP11-420N3.2	Clone_based_vega_gene	ENSG00000260411				58	0	0.00	52	3	5.45
EPHA6	0	genome.wustl.edu	37	3	97185294	97185294	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	3	97185294	97185294	G	T	SNP	EPHA6	ENST00000502694	human	ensembl	74_37	+1	known	missense	c.38	p.W13L	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224	tier1	-	-	40	0	0.00	31	4	11.43
EPHA7	0	genome.wustl.edu	37	6	94120570	94120570	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	6	94120570	94120570	C	A	SNP	EPHA7	ENST00000369303	human	ensembl	74_37	-1	known	missense	c.481	p.G161C	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333	tier1	-	-	54	0	0.00	44	4	8.33
ERC1	0	genome.wustl.edu	37	12	1481019	1481019	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	1481019	1481019	C	T	SNP	ERC1	ENST00000360905	human	ensembl	74_37	+1	known	missense	c.2801	p.A934V	1.000	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805	tier1	-	-	70	0	0.00	60	4	6.25
ERC2	0	genome.wustl.edu	37	3	56207521	56207521	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	3	56207521	56207521	G	A	SNP	ERC2	ENST00000288221	human	ensembl	74_37	-1	known	missense	c.1102	p.P368S	1.000	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672	tier1	-	-	63	0	0.00	64	5	7.25
ETV4	0	genome.wustl.edu	37	17	41607045	41607045	+	Splice_Site	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	17	41607045	41607045	C	T	SNP	ETV4	ENST00000319349	human	ensembl	74_37	-1	known	splice_site	c.956-1	e10-1	1.000	-	-	-	no_errors	ETV4	HGNC	ENSG00000175832	tier1	-	-	54	0	0.00	64	6	8.57
FAM124A	0	genome.wustl.edu	37	13	51854621	51854621	+	Silent	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	13	51854621	51854621	C	A	SNP	FAM124A	ENST00000280057	human	ensembl	74_37	+1	known	silent	c.978	p.G326	0.001	NULL	NULL	-	no_errors	FAM124A	HGNC	ENSG00000150510	tier1	-	-	48	0	0.00	58	4	6.45
FAM13C	0	genome.wustl.edu	37	10	61022288	61022288	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	10	61022288	61022288	G	T	SNP	FAM13C	ENST00000373868	human	ensembl	74_37	-1	known	missense	c.1142	p.P381Q	0.999	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541				55	0	0.00	55	3	5.00
FAM160B2	0	genome.wustl.edu	37	8	21957265	21957265	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	8	21957265	21957265	G	A	SNP	FAM160B2	ENST00000289921	human	ensembl	74_37	+1	known	missense	c.1202	p.R401H	1.000	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160B2	HGNC	ENSG00000158863	tier1	-	-	48	0	0.00	37	7	15.91
FAM46A	0	genome.wustl.edu	37	6	82459847	82459847	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	6	82459847	82459847	G	T	SNP	FAM46A	ENST00000369754	human	ensembl	74_37	-1	known	missense	c.951	p.N317K	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46A	HGNC	ENSG00000112773	tier1	-	-	59	0	0.00	43	4	8.51
FANCM	0	genome.wustl.edu	37	14	45658089	45658089	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	14	45658089	45658089	G	T	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	nonsense	c.4864	p.E1622*	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				60	0	0.00	46	3	6.12
FAP	0	genome.wustl.edu	37	2	163083065	163083065	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	163083065	163083065	G	T	SNP	FAP	ENST00000188790	human	ensembl	74_37	-1	known	missense	c.158	p.S53Y	0.122	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098				39	0	0.00	38	2	5.00
FCHO1	0	genome.wustl.edu	37	19	17865939	17865939	+	RNA	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	19	17865939	17865939	C	T	SNP	FCHO1	ENST00000599236	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	FCHO1	HGNC	ENSG00000130475	tier1	-	-	44	0	0.00	48	9	15.79
FCRL3	0	genome.wustl.edu	37	1	157665150	157665150	+	Silent	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	157665150	157665150	C	T	SNP	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	silent	c.1398	p.Q466	0.028	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL3	HGNC	ENSG00000160856	tier1	-	-	53	0	0.00	59	4	6.35
FKBP6	0	genome.wustl.edu	37	7	72742619	72742619	+	Silent	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	7	72742619	72742619	G	A	SNP	FKBP6	ENST00000252037	human	ensembl	74_37	+1	known	silent	c.99	p.S33	0.013	NULL	pfam_PPIase_FKBP_dom,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP6	HGNC	ENSG00000077800	tier1	-	-	33	0	0.00	45	7	13.46
FMN2	0	genome.wustl.edu	37	1	240371521	240371521	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	240371521	240371521	G	A	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.3409	p.G1137R	0.001	pfam_Formin_homology_1,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				56	0	0.00	57	4	6.45
FREM3	0	genome.wustl.edu	37	4	144618303	144618303	+	Missense_Mutation	SNP	A	A	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	4	144618303	144618303	A	C	SNP	FREM3	ENST00000329798	human	ensembl	74_37	-1	putative	missense	c.3526	p.F1176V	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM3	HGNC	ENSG00000183090	tier1	-	-	59	0	0.00	58	6	9.38
FRYL	0	genome.wustl.edu	37	4	48636316	48636316	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	4	48636316	48636316	C	A	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	nonsense	c.112	p.E38*	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				61	0	0.00	45	4	8.16
FRZB	0	genome.wustl.edu	37	2	183731088	183731088	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	183731088	183731088	C	T	SNP	FRZB	ENST00000295113	human	ensembl	74_37	-1	known	missense	c.193	p.A65T	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	FRZB	HGNC	ENSG00000162998	tier1	-	-	61	0	0.00	61	6	8.96
GABRR2	0	genome.wustl.edu	37	6	89977400	89977400	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	6	89977400	89977400	G	T	SNP	GABRR2	ENST00000602399	human	ensembl	74_37	-1	known	missense	c.809	p.T270N	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho2_rcpt,prints_GABAAa_rho_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRR2	HGNC	ENSG00000111886				99	0	0.00	65	4	5.80
GALNT12	0	genome.wustl.edu	37	9	101589033	101589033	+	Splice_Site	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	9	101589033	101589033	G	T	SNP	GALNT12	ENST00000375011	human	ensembl	74_37	+1	known	splice_site	c.542-1	e3-1	1.000	-	-	-	no_errors	GALNT12	HGNC	ENSG00000119514	tier1	-	-	36	0	0.00	36	4	10.00
GCFC2	0	genome.wustl.edu	37	2	75915055	75915055	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	75915055	75915055	C	T	SNP	GCFC2	ENST00000321027	human	ensembl	74_37	-1	known	missense	c.1588	p.E530K	1.000	pfam_GCFC_dom	pfam_GCFC_dom	-	no_errors	GCFC2	HGNC	ENSG00000005436	tier1	-	-	83	0	0.00	75	4	5.06
GCK	0	genome.wustl.edu	37	7	44189585	44189585	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	7	44189585	44189585	C	T	SNP	GCK	ENST00000345378	human	ensembl	74_37	-1	known	missense	c.565	p.A189T	1.000	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	GCK	HGNC	ENSG00000106633				23	0	0.00	29	4	12.12
GJA5	0	genome.wustl.edu	37	1	147230638	147230638	+	Nonsense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	147230638	147230638	G	A	SNP	GJA5	ENST00000271348	human	ensembl	74_37	-1	known	nonsense	c.709	p.R237*	0.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin40	-	no_errors	GJA5	HGNC	ENSG00000143140				30	0	0.00	55	3	5.17
GOSR1	0	genome.wustl.edu	37	17	28837905	28837905	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	17	28837905	28837905	C	T	SNP	GOSR1	ENST00000225724	human	ensembl	74_37	+1	known	missense	c.523	p.R175C	1.000	NULL	NULL	-	no_errors	GOSR1	HGNC	ENSG00000108587	tier1	-	-	102	0	0.00	76	4	5.00
GPD2	0	genome.wustl.edu	37	2	157436298	157436298	+	Nonsense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	157436298	157436298	C	T	SNP	GPD2	ENST00000310454	human	ensembl	74_37	+1	known	nonsense	c.2056	p.Q686*	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_G3P_DH_FAD-dep	-	no_errors	GPD2	HGNC	ENSG00000115159	tier1	-	-	69	0	0.00	52	4	7.14
GPR116	0	genome.wustl.edu	37	6	46839653	46839653	+	Silent	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	6	46839653	46839653	G	T	SNP	GPR116	ENST00000265417	human	ensembl	74_37	-1	known	silent	c.1338	p.I446	0.079	pfscan_Ig-like_dom,prints_GPCR_2_Ig-hepta_rcpt	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	tier1	-	-	74	0	0.00	72	4	5.26
GPR20	0	genome.wustl.edu	37	8	142367889	142367889	+	Silent	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	8	142367889	142367889	C	A	SNP	GPR20	ENST00000377741	human	ensembl	74_37	-1	known	silent	c.135	p.L45	0.657	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR20	HGNC	ENSG00000204882	tier1	-	-	107	0	0.00	104	14	11.76
GPR98	0	genome.wustl.edu	37	5	89938579	89938579	+	Missense_Mutation	SNP	A	A	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	5	89938579	89938579	A	C	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.2367	p.K789N	0.944	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	tier1	-	-	84	0	0.00	59	6	9.23
GPSM2	0	genome.wustl.edu	37	1	109465107	109465107	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	109465107	109465107	G	T	SNP	GPSM2	ENST00000264126	human	ensembl	74_37	+1	known	missense	c.1509	p.R503S	1.000	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	pfam_GoLoco_motif,pfam_TPR_1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957	tier1	-	-	101	0	0.00	75	4	5.06
GTPBP4	0	genome.wustl.edu	37	10	1052988	1052988	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	10	1052988	1052988	G	T	SNP	GTPBP4	ENST00000360803	human	ensembl	74_37	+1	known	nonsense	c.1033	p.E345*	1.000	pfam_Fe2_transport_prot_B_N	pfam_NOG1_Rossman_fold_dom,pfam_NOG_C,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_MIRO-like,superfamily_P-loop_NTPase,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP4	HGNC	ENSG00000107937	tier1	-	-	58	0	0.00	64	4	5.88
HCAR2	0	genome.wustl.edu	37	12	123187714	123187714	+	Missense_Mutation	SNP	G	G	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	123187714	123187714	G	C	SNP	HCAR2	ENST00000328880	human	ensembl	74_37	-1	known	missense	c.117	p.I39M	0.189	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	HCAR2	HGNC	ENSG00000182782	tier1	-	-	75	0	0.00	90	6	6.25
HCCS	0	genome.wustl.edu	37	X	11139818	11139818	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	X	11139818	11139818	G	A	SNP	HCCS	ENST00000321143	human	ensembl	74_37	+1	known	missense	c.695	p.G232D	0.870	pfam_Cyt_C/C1_haem_lyase	pfam_Cyt_C/C1_haem_lyase	-	no_errors	HCCS	HGNC	ENSG00000004961	tier1	-	-	32	0	0.00	18	3	14.29
HLA-DPB2	0	genome.wustl.edu	37	6	33080318	33080318	+	RNA	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	6	33080318	33080318	G	T	SNP	HLA-DPB2	ENST00000435074	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HLA-DPB2	HGNC	ENSG00000224557	tier1	-	-	55	0	0.00	62	4	6.06
HMCN1	0	genome.wustl.edu	37	1	185972897	185972897	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	185972897	185972897	G	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.4396	p.V1466F	0.970	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				71	0	0.00	58	5	7.94
HSPH1	0	genome.wustl.edu	37	13	31713165	31713165	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	13	31713165	31713165	G	T	SNP	HSPH1	ENST00000445273	human	ensembl	74_37	-1	known	missense	c.2066	p.A689E	0.993	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPH1	HGNC	ENSG00000120694	tier1	-	-	78	0	0.00	68	4	5.48
INADL	0	genome.wustl.edu	37	1	62614014	62614014	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	62614014	62614014	G	T	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	missense	c.5330	p.G1777V	0.604	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849				57	0	0.00	45	3	6.25
INCENP	0	genome.wustl.edu	37	11	61914190	61914190	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	11	61914190	61914190	C	T	SNP	INCENP	ENST00000394818	human	ensembl	74_37	+1	known	missense	c.2020	p.R674W	1.000	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503				82	0	0.00	71	4	5.33
INPP4A	0	genome.wustl.edu	37	2	99154342	99154342	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	99154342	99154342	C	T	SNP	INPP4A	ENST00000074304	human	ensembl	74_37	+1	known	missense	c.484	p.R162C	1.000	NULL	superfamily_C2_dom	-	no_errors	INPP4A	HGNC	ENSG00000040933				53	0	0.00	57	3	5.00
ITGBL1	0	genome.wustl.edu	37	13	102227889	102227889	+	Missense_Mutation	SNP	T	T	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	13	102227889	102227889	T	C	SNP	ITGBL1	ENST00000376180	human	ensembl	74_37	+1	known	missense	c.578	p.I193T	1.000	pfam_EGF_extracell,smart_EG-like_dom	pfam_EGF_extracell,smart_EG-like_dom	-	no_errors	ITGBL1	HGNC	ENSG00000198542	tier1	-	-	95	0	0.00	103	7	6.36
KCNQ4	0	genome.wustl.edu	37	1	41284640	41284640	+	RNA	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	41284640	41284640	G	T	SNP	KCNQ4	ENST00000506017	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KCNQ4	HGNC	ENSG00000117013	tier1	-	-	23	0	0.00	20	4	16.67
KDR	0	genome.wustl.edu	37	4	55956188	55956188	+	Nonsense_Mutation	SNP	T	T	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	4	55956188	55956188	T	A	SNP	KDR	ENST00000263923	human	ensembl	74_37	-1	known	nonsense	c.3127	p.K1043*	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR2_rcpt	-	no_errors	KDR	HGNC	ENSG00000128052				57	0	0.00	39	6	13.33
KHNYN	0	genome.wustl.edu	37	14	24900980	24900980	+	Frame_Shift_Del	DEL	G	G	-			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	14	24900980	24900980	G	-	DEL	KHNYN	ENST00000251343	human	ensembl	74_37	+1	known	frame_shift_del	c.513	p.D173fs	0.000	NULL	pfam_RNase_Zc3h12	-	no_errors	KHNYN	HGNC	ENSG00000100441	tier1			30	0	0.00	22	2	8.33
KIAA1324	0	genome.wustl.edu	37	1	109743447	109743447	+	Silent	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	109743447	109743447	C	A	SNP	KIAA1324	ENST00000369939	human	ensembl	74_37	+1	known	silent	c.2898	p.G966	0.986	NULL	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	KIAA1324	HGNC	ENSG00000116299				17	0	0.00	17	2	10.53
KIF13A	0	genome.wustl.edu	37	6	17764594	17764594	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	6	17764594	17764594	G	A	SNP	KIF13A	ENST00000259711	human	ensembl	74_37	-1	known	missense	c.5165	p.T1722M	0.997	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	tier1	-	-	149	0	0.00	126	19	13.10
KLHDC7B	0	genome.wustl.edu	37	22	50987858	50987858	+	Silent	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	22	50987858	50987858	C	T	SNP	KLHDC7B	ENST00000395676	human	ensembl	74_37	+1	known	silent	c.1263	p.Y421	0.994	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7B	HGNC	ENSG00000130487				50	0	0.00	32	3	8.57
KLHL7	0	genome.wustl.edu	37	7	23164708	23164708	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	7	23164708	23164708	C	T	SNP	KLHL7	ENST00000339077	human	ensembl	74_37	+1	known	missense	c.359	p.A120V	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL7	HGNC	ENSG00000122550	tier1	-	-	56	0	0.00	64	4	5.88
KSR2	0	genome.wustl.edu	37	12	117977585	117977585	+	Silent	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	117977585	117977585	C	T	SNP	KSR2	ENST00000339824	human	ensembl	74_37	-1	known	silent	c.1626	p.P542	0.980	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	KSR2	HGNC	ENSG00000171435	tier1	-	-	33	0	0.00	32	6	15.79
LAT2	0	genome.wustl.edu	37	7	73638368	73638368	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	7	73638368	73638368	G	A	SNP	LAT2	ENST00000275635	human	ensembl	74_37	+1	known	missense	c.469	p.G157S	0.004	NULL	NULL	-	no_errors	LAT2	HGNC	ENSG00000086730	tier1	-	-	65	0	0.00	45	5	9.80
LINC00599	0	genome.wustl.edu	37	8	9760811	9760811	+	RNA	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	8	9760811	9760811	G	A	SNP	LINC00599	ENST00000517675	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00599	HGNC	ENSG00000253230	tier1	-	-	44	0	0.00	44	16	26.67
LMLN	0	genome.wustl.edu	37	3	197762815	197762815	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	3	197762815	197762815	G	T	SNP	LMLN	ENST00000330198	human	ensembl	74_37	+1	known	missense	c.1768	p.D590Y	0.016	pfam_Peptidase_M8	pfam_Peptidase_M8	-	no_errors	LMLN	HGNC	ENSG00000185621				85	0	0.00	61	4	6.06
LOC101927516	0	genome.wustl.edu	37	4	141055470	141055470	+	RNA	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	4	141055470	141055470	G	T	SNP	LOC101927516	ENST00000509184	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-392B6.1	Clone_based_vega_gene	ENSG00000250698	tier1	-	-	44	0	0.00	35	4	10.26
LOC101929655	0	genome.wustl.edu	37	15	81633902	81633902	+	Splice_Site	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	15	81633902	81633902	G	T	SNP	LOC101929655	ENST00000559781	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.010	-	-	-	no_errors	RP11-761I4.3	Clone_based_vega_gene	ENSG00000259343	tier1	-	-	63	0	0.00	49	4	7.55
LOC644669	0	genome.wustl.edu	37	18	15316542	15316542	+	RNA	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	18	15316542	15316542	G	T	SNP	LOC644669	ENST00000455308	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.181	-	-	-	no_errors	AP005901.1	Clone_based_vega_gene	ENSG00000215512	tier1	rs12953331	-	41	0	0.00	42	8	16.00
LOXHD1	0	genome.wustl.edu	37	18	44102122	44102122	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	18	44102122	44102122	C	T	SNP	LOXHD1	ENST00000536736	human	ensembl	74_37	-1	known	missense	c.5027	p.G1676D	1.000	superfamily_Lipase_LipOase	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	-	no_errors	LOXHD1	HGNC	ENSG00000167210	tier1	-	-	72	0	0.00	54	6	10.00
LPCAT4	0	genome.wustl.edu	37	15	34651938	34651938	+	Silent	SNP	A	A	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	15	34651938	34651938	A	G	SNP	LPCAT4	ENST00000314891	human	ensembl	74_37	-1	known	silent	c.1251	p.A417	0.887	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	LPCAT4	HGNC	ENSG00000176454				58	0	0.00	68	4	5.56
LPPR2	0	genome.wustl.edu	37	19	11470601	11470601	+	Silent	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	19	11470601	11470601	C	T	SNP	LPPR2	ENST00000591608	human	ensembl	74_37	+1	known	silent	c.285	p.S95	0.998	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	DKFZP761J1410	Uniprot_gn	ENSG00000105520	tier1	rs201978882	-	63	0	0.00	63	6	8.70
LY75	0	genome.wustl.edu	37	2	160706507	160706507	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	160706507	160706507	A	G	SNP	LY75	ENST00000554112	human	ensembl	74_37	-1	known	missense	c.3134	p.L1045P	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219	tier1	-	-	62	0	0.00	57	4	6.56
MACF1	0	genome.wustl.edu	37	1	39906714	39906714	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	39906714	39906714	G	T	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	nonsense	c.12310	p.E4104*	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603	tier1	-	-	76	0	0.00	61	4	6.15
MAP2	0	genome.wustl.edu	37	2	210557512	210557512	+	Silent	SNP	T	T	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	210557512	210557512	T	G	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.618	p.T206	0.000	NULL	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	tier1	-	-	58	0	0.00	48	6	11.11
MAP4K4	0	genome.wustl.edu	37	2	102483020	102483020	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	102483020	102483020	G	T	SNP	MAP4K4	ENST00000324219	human	ensembl	74_37	+1	known	missense	c.2335	p.G779W	1.000	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054	tier1	-	-	40	0	0.00	31	4	11.43
MAST2	0	genome.wustl.edu	37	1	46496277	46496277	+	Splice_Site	SNP	A	A	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	46496277	46496277	A	G	SNP	MAST2	ENST00000361297	human	ensembl	74_37	+1	known	splice_site	c.2554-2	e22-2	1.000	-	-	-	no_errors	MAST2	HGNC	ENSG00000086015	tier1	-	-	80	0	0.00	69	4	5.48
MAST2	0	genome.wustl.edu	37	1	46501457	46501457	+	Nonsense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	46501457	46501457	C	T	SNP	MAST2	ENST00000361297	human	ensembl	74_37	+1	known	nonsense	c.5116	p.Q1706*	0.107	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST2	HGNC	ENSG00000086015	tier1	-	-	44	0	0.00	38	4	9.52
MCC	0	genome.wustl.edu	37	5	112379231	112379231	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	5	112379231	112379231	G	A	SNP	MCC	ENST00000302475	human	ensembl	74_37	-1	known	missense	c.2182	p.R728C	0.996	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444	tier1	-	-	54	0	0.00	39	4	9.30
MED13L	0	genome.wustl.edu	37	12	116401223	116401223	+	Silent	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	116401223	116401223	C	T	SNP	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	silent	c.6489	p.S2163	0.962	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	tier1	rs140228421	-	51	0	0.00	42	4	8.70
MEF2C	0	genome.wustl.edu	37	5	88100421	88100421	+	Silent	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	5	88100421	88100421	G	A	SNP	MEF2C	ENST00000437473	human	ensembl	74_37	-1	known	silent	c.252	p.I84	0.999	superfamily_TF_MADSbox	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,prints_TF_MADSbox,pfscan_TF_MADSbox	-	no_errors	MEF2C	HGNC	ENSG00000081189	tier1	-	-	63	0	0.00	60	7	10.45
METTL2A	0	genome.wustl.edu	37	17	60518003	60518003	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	17	60518003	60518003	G	A	SNP	METTL2A	ENST00000311506	human	ensembl	74_37	+1	known	missense	c.695	p.R232Q	1.000	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase	-	no_errors	METTL2A	HGNC	ENSG00000087995	tier1	-	-	65	0	0.00	70	11	13.58
MEX3A	0	genome.wustl.edu	37	1	156051653	156051653	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	156051653	156051653	C	A	SNP	MEX3A	ENST00000532414	human	ensembl	74_37	-1	known	missense	c.137	p.C46F	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3A	HGNC	ENSG00000254726				43	0	0.00	38	4	9.30
MIR485	0	genome.wustl.edu	37	14	101521775	101521775	+	RNA	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	14	101521775	101521775	G	A	SNP	MIR485	ENST00000385292	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR485	HGNC	ENSG00000208027				21	0	0.00	40	4	9.09
MKI67	0	genome.wustl.edu	37	10	129913974	129913974	+	Frame_Shift_Del	DEL	T	T	-			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	10	129913974	129913974	T	-	DEL	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	frame_shift_del	c.698	p.N233fs	0.003	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	tier1			53	0	0.00	43	5	10.42
MOCS3	0	genome.wustl.edu	37	20	49576475	49576475	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	20	49576475	49576475	C	T	SNP	MOCS3	ENST00000244051	human	ensembl	74_37	+1	known	missense	c.1096	p.R366C	1.000	pfam_Rhodanese-like_dom,superfamily_Molybdenum_cofac_synth_MoeB,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_ThiF_NAD_FAD-bd,pfam_MoeZ_MoeB,pfam_Rhodanese-like_dom,superfamily_Molybdenum_cofac_synth_MoeB,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	MOCS3	HGNC	ENSG00000124217				36	0	0.00	32	3	8.11
MRPS2	0	genome.wustl.edu	37	9	138392962	138392962	+	Silent	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	9	138392962	138392962	C	T	SNP	MRPS2	ENST00000241600	human	ensembl	74_37	+1	known	silent	c.162	p.D54	0.000	NULL	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2	-	no_errors	MRPS2	HGNC	ENSG00000122140	tier1	-	-	32	0	0.00	36	4	10.00
MTHFSD	0	genome.wustl.edu	37	16	86575392	86575392	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	16	86575392	86575392	C	T	SNP	MTHFSD	ENST00000360900	human	ensembl	74_37	-1	known	missense	c.592	p.D198N	1.000	pfam_FTHF_cligase	pfam_FTHF_cligase,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MTHFSD	HGNC	ENSG00000103248				20	0	0.00	22	3	12.00
MUC16	0	genome.wustl.edu	37	19	9057288	9057288	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	19	9057288	9057288	A	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.30158	p.L10053P	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	42	0	0.00	29	5	14.71
MYH7	0	genome.wustl.edu	37	14	23888490	23888490	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	14	23888490	23888490	G	T	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	missense	c.3868	p.Q1290K	0.999	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				58	0	0.00	48	3	5.88
MYO5C	0	genome.wustl.edu	37	15	52545602	52545602	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	15	52545602	52545602	G	T	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	missense	c.1448	p.T483K	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833				54	0	0.00	42	3	6.52
MYO9B	0	genome.wustl.edu	37	19	17212666	17212666	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	19	17212666	17212666	G	A	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	missense	c.139	p.V47I	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331	tier1	-	-	44	0	0.00	29	10	25.64
NCDN	0	genome.wustl.edu	37	1	36028217	36028217	+	Nonsense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	36028217	36028217	G	A	SNP	NCDN	ENST00000356090	human	ensembl	74_37	+1	known	nonsense	c.1368	p.W456*	1.000	NULL	NULL	-	no_errors	NCDN	HGNC	ENSG00000020129				31	0	0.00	29	2	6.45
NEUROD1	0	genome.wustl.edu	37	2	182543465	182543465	+	Silent	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	182543465	182543465	G	A	SNP	NEUROD1	ENST00000295108	human	ensembl	74_37	-1	known	silent	c.123	p.D41	0.996	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD1	HGNC	ENSG00000162992	tier1	-	-	83	0	0.00	86	5	5.49
NFE2L1	0	genome.wustl.edu	37	17	46136806	46136806	+	Nonsense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	17	46136806	46136806	C	T	SNP	NFE2L1	ENST00000362042	human	ensembl	74_37	+1	known	nonsense	c.2122	p.R708*	1.000	pfam_bZIP,smart_bZIP,pfscan_bZIP	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641	tier1	-	-	37	0	0.00	29	5	14.71
NFX1	0	genome.wustl.edu	37	9	33295406	33295406	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	9	33295406	33295406	G	T	SNP	NFX1	ENST00000379540	human	ensembl	74_37	+1	known	missense	c.1014	p.K338N	1.000	NULL	pfam_Znf_NFX1,pfam_R3H_ss-bd,smart_Znf_RING,smart_Znf_NFX1,smart_R3H_ss-bd,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_R3H_ss-bd	-	no_errors	NFX1	HGNC	ENSG00000086102				43	0	0.00	33	2	5.71
NIPSNAP3A	0	genome.wustl.edu	37	9	107516796	107516796	+	RNA	SNP	A	A	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	9	107516796	107516796	A	T	SNP	NIPSNAP3A	ENST00000471001	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NIPSNAP3A	HGNC	ENSG00000136783	tier1	-	-	35	0	0.00	51	4	7.27
NOD1	0	genome.wustl.edu	37	7	30492172	30492172	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	7	30492172	30492172	G	A	SNP	NOD1	ENST00000423334	human	ensembl	74_37	-1	known	missense	c.725	p.T242M	0.982	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100	tier1	-	-	79	0	0.00	63	5	7.35
NOP9	0	genome.wustl.edu	37	14	24770856	24770856	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	14	24770856	24770856	G	T	SNP	NOP9	ENST00000267425	human	ensembl	74_37	+1	known	missense	c.736	p.D246Y	0.998	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt	-	no_errors	NOP9	HGNC	ENSG00000196943	tier1	-	-	77	0	0.00	74	4	5.13
NOTCH4	0	genome.wustl.edu	37	6	32188007	32188007	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	6	32188007	32188007	G	T	SNP	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	missense	c.1214	p.A405D	1.000	pirsf_Notch,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	tier1	-	-	44	0	0.00	45	5	10.00
NRXN1	0	genome.wustl.edu	37	2	51149818	51149818	+	Silent	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	51149818	51149818	C	T	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	silent	c.798	p.A266	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				42	0	0.00	26	2	7.14
NTRK3	0	genome.wustl.edu	37	15	88472495	88472495	+	Missense_Mutation	SNP	A	A	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	15	88472495	88472495	A	C	SNP	NTRK3	ENST00000360948	human	ensembl	74_37	-1	known	missense	c.2060	p.V687G	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538	tier1	-	-	60	0	0.00	49	4	7.41
NTSR1	0	genome.wustl.edu	37	20	61340826	61340826	+	Silent	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	20	61340826	61340826	G	A	SNP	NTSR1	ENST00000370501	human	ensembl	74_37	+1	known	silent	c.267	p.A89	0.987	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_NT1_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_NT1_rcpt,prints_GPCR_Rhodpsn,prints_NT_rcpt	-	no_errors	NTSR1	HGNC	ENSG00000101188	tier1	-	-	19	0	0.00	21	6	22.22
NXPH4	0	genome.wustl.edu	37	12	57619118	57619118	+	Missense_Mutation	SNP	T	T	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	57619118	57619118	T	C	SNP	NXPH4	ENST00000349394	human	ensembl	74_37	+1	known	missense	c.515	p.V172A	0.113	pirsf_Neurexophilin	pfam_NXPH/NXPE,pirsf_Neurexophilin	-	no_errors	NXPH4	HGNC	ENSG00000182379				57	0	0.00	52	3	5.45
OAS3	0	genome.wustl.edu	37	12	113379474	113379474	+	Missense_Mutation	SNP	C	C	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	113379474	113379474	C	G	SNP	OAS3	ENST00000228928	human	ensembl	74_37	+1	known	missense	c.277	p.R93G	0.000	pfscan_2-5-oligoadenylate_synth_N	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS3	HGNC	ENSG00000111331	tier1	-	-	46	0	0.00	43	4	8.51
ODF3L2	0	genome.wustl.edu	37	19	464029	464029	+	Frame_Shift_Del	DEL	G	G	-			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	19	464029	464029	G	-	DEL	ODF3L2	ENST00000315489	human	ensembl	74_37	-1	known	frame_shift_del	c.685	p.R229fs	0.010	NULL	pfam_SHIPPO-rpt	-	no_errors	ODF3L2	HGNC	ENSG00000181781	tier1			42	0	0.00	32	3	8.57
OLFM3	0	genome.wustl.edu	37	1	102269856	102269856	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	102269856	102269856	C	T	SNP	OLFM3	ENST00000338858	human	ensembl	74_37	-1	known	missense	c.1375	p.G459S	1.000	pfam_Olfac-like,superfamily_Quino_amine_DH_bsu,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quino_amine_DH_bsu,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM3	HGNC	ENSG00000118733	tier1	-	-	57	0	0.00	37	4	9.76
OR5B17	0	genome.wustl.edu	37	11	58126193	58126193	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	11	58126193	58126193	G	T	SNP	OR5B17	ENST00000357377	human	ensembl	74_37	-1	known	missense	c.350	p.A117D	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5B17	HGNC	ENSG00000197786				74	0	0.00	54	3	5.26
OTOF	0	genome.wustl.edu	37	2	26741909	26741909	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	26741909	26741909	G	T	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	missense	c.296	p.T99K	0.998	superfamily_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				24	0	0.00	28	2	6.67
OXSR1	0	genome.wustl.edu	37	3	38234783	38234783	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	3	38234783	38234783	G	T	SNP	OXSR1	ENST00000426620	human	ensembl	74_37	+1	known	missense	c.303	p.W101C	1.000	pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	OXSR1	HGNC	ENSG00000172939	tier1	-	-	79	0	0.00	60	4	6.25
PAPOLA	0	genome.wustl.edu	37	14	96986549	96986549	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	14	96986549	96986549	G	T	SNP	PAPOLA	ENST00000216277	human	ensembl	74_37	+1	known	nonsense	c.166	p.E56*	1.000	pfam_PolA_pol_cen_dom,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLA	HGNC	ENSG00000090060	tier1	-	-	79	0	0.00	67	4	5.63
PCDHAC2	0	genome.wustl.edu	37	5	140348787	140348787	+	Silent	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	5	140348787	140348787	G	A	SNP	PCDHAC2	ENST00000289269	human	ensembl	74_37	+1	known	silent	c.2436	p.G812	0.996	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232	tier1	-	-	36	0	0.00	27	6	17.65
PDE4A	0	genome.wustl.edu	37	19	10543166	10543166	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	19	10543166	10543166	C	T	SNP	PDE4A	ENST00000440014	human	ensembl	74_37	+1	known	missense	c.56	p.P19L	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4A	HGNC	ENSG00000065989	tier1	-	-	30	0	0.00	33	5	12.82
PIP4K2B	0	genome.wustl.edu	37	17	36936743	36936743	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	17	36936743	36936743	C	T	SNP	PIP4K2B	ENST00000269554	human	ensembl	74_37	-1	known	missense	c.469	p.V157M	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2B	HGNC	ENSG00000141720				66	0	0.00	53	3	5.36
POTEE	0	genome.wustl.edu	37	2	132010593	132010593	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	132010593	132010593	G	T	SNP	POTEE	ENST00000356920	human	ensembl	74_37	+1	known	missense	c.1699	p.D567Y	0.008	NULL	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEE	HGNC	ENSG00000188219				266	0	0.00	281	16	5.39
PPP2R1A	0	genome.wustl.edu	37	19	52723017	52723017	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	19	52723017	52723017	C	T	SNP	PPP2R1A	ENST00000322088	human	ensembl	74_37	+1	known	missense	c.1202	p.S401F	1.000	superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1A	HGNC	ENSG00000105568	tier1	-	-	44	0	0.00	29	4	12.12
PRAM1	0	genome.wustl.edu	37	19	8563310	8563310	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	19	8563310	8563310	G	A	SNP	PRAM1	ENST00000423345	human	ensembl	74_37	-1	known	missense	c.1382	p.P461L	0.869	NULL	superfamily_SH3_domain	-	no_errors	PRAM1	HGNC	ENSG00000133246	tier1	-	-	50	0	0.00	40	9	18.00
PRAMEF11	0	genome.wustl.edu	37	1	12887301	12887301	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	12887301	12887301	G	A	SNP	PRAMEF11	ENST00000535591	human	ensembl	74_37	-1	known	missense	c.556	p.P186S	0.002	NULL	NULL	-	no_errors	PRAMEF11	HGNC	ENSG00000204513	tier1	-	-	315	0	0.00	279	17	5.74
PRB4	0	genome.wustl.edu	37	12	11461742	11461742	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	11461742	11461742	C	T	SNP	PRB4	ENST00000279575	human	ensembl	74_37	-1	known	missense	c.175	p.G59R	0.012	NULL	NULL	-	no_errors	PRB4	HGNC	ENSG00000230657	tier1	-	-	134	0	0.00	177	11	5.85
PRDX6	0	genome.wustl.edu	37	1	173450517	173450517	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	173450517	173450517	G	T	SNP	PRDX6	ENST00000340385	human	ensembl	74_37	+1	known	nonsense	c.148	p.E50*	1.000	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Peroxiredoxin_C,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX6	HGNC	ENSG00000117592				66	0	0.00	63	5	7.35
PRSS58	0	genome.wustl.edu	37	7	141952333	141952333	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	7	141952333	141952333	G	T	SNP	PRSS58	ENST00000547058	human	ensembl	74_37	-1	known	missense	c.535	p.L179M	0.803	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS58	HGNC	ENSG00000258223				47	0	0.00	36	2	5.26
PTPRD	0	genome.wustl.edu	37	9	8500858	8500858	+	Missense_Mutation	SNP	T	T	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	9	8500858	8500858	T	C	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	missense	c.2024	p.E675G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	tier1	-	-	132	0	0.00	105	10	8.70
RAD21L1	0	genome.wustl.edu	37	20	1214736	1214736	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	20	1214736	1214736	G	T	SNP	RAD21L1	ENST00000409241	human	ensembl	74_37	+1	known	missense	c.376	p.D126Y	1.000	NULL	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu	-	no_errors	RAD21L1	HGNC	ENSG00000244588	tier1	-	-	47	0	0.00	54	4	6.90
RD3	0	genome.wustl.edu	37	1	211652558	211652558	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	211652558	211652558	G	T	SNP	RD3	ENST00000367002	human	ensembl	74_37	-1	known	missense	c.408	p.H136Q	0.995	NULL	NULL	-	no_errors	RD3	HGNC	ENSG00000198570				58	0	0.00	61	4	6.15
RGS7	0	genome.wustl.edu	37	1	240939498	240939498	+	Missense_Mutation	SNP	A	A	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	240939498	240939498	A	T	SNP	RGS7	ENST00000366565	human	ensembl	74_37	-1	known	missense	c.1429	p.S477T	1.000	NULL	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,prints_RGS_dom,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS7	HGNC	ENSG00000182901	tier1	-	-	39	0	0.00	36	5	12.20
RGS8	0	genome.wustl.edu	37	1	182636065	182636065	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	182636065	182636065	A	G	SNP	RGS8	ENST00000258302	human	ensembl	74_37	-1	known	missense	c.124	p.S42P	1.000	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS8	HGNC	ENSG00000135824	tier1	-	-	29	0	0.00	26	4	13.33
RNF19B	0	genome.wustl.edu	37	1	33402751	33402751	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	33402751	33402751	C	T	SNP	RNF19B	ENST00000373456	human	ensembl	74_37	-1	known	missense	c.1855	p.A619T	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19B	HGNC	ENSG00000116514				75	0	0.00	71	4	5.33
RNF6	0	genome.wustl.edu	37	13	26788999	26788999	+	Silent	SNP	A	A	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	13	26788999	26788999	A	T	SNP	RNF6	ENST00000346166	human	ensembl	74_37	-1	known	silent	c.1020	p.S340	0.998	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF6	HGNC	ENSG00000127870	tier1	-	-	68	0	0.00	68	4	5.56
RNPEPL1	0	genome.wustl.edu	37	2	241513968	241513968	+	Missense_Mutation	SNP	T	T	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	241513968	241513968	T	C	SNP	RNPEPL1	ENST00000270357	human	ensembl	74_37	+1	known	missense	c.518	p.L173P	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_C,pfam_Peptidase_M1_N,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEPL1	HGNC	ENSG00000142327	tier1	-	-	60	0	0.00	51	4	7.27
RPAIN	0	genome.wustl.edu	37	17	5329555	5329555	+	Splice_Site	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	17	5329555	5329555	G	T	SNP	RPAIN	ENST00000405578	human	ensembl	74_37	+1	known	splice_site	c.426-1	e5-1	1.000	-	-	-	no_errors	RPAIN	HGNC	ENSG00000129197	tier1	-	-	98	0	0.00	94	5	5.05
RPTOR	0	genome.wustl.edu	37	17	78797005	78797005	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	17	78797005	78797005	C	T	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	missense	c.1118	p.T373M	0.996	NULL	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564				45	0	0.00	42	4	8.70
RRBP1	0	genome.wustl.edu	37	20	17640489	17640489	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	20	17640489	17640489	C	A	SNP	RRBP1	ENST00000246043	human	ensembl	74_37	-1	known	missense	c.664	p.A222S	0.027	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	tier1	-	-	125	0	0.00	111	10	8.26
RYR2	0	genome.wustl.edu	37	1	237758827	237758827	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	237758827	237758827	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.4460	p.C1487Y	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	tier1	-	-	62	0	0.00	55	8	12.70
SALL1	0	genome.wustl.edu	37	16	51173577	51173577	+	Silent	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	16	51173577	51173577	G	T	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	silent	c.2556	p.S852	0.121	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	tier1	-	-	47	0	0.00	48	4	7.69
SAMD9L	0	genome.wustl.edu	37	7	92763145	92763145	+	Missense_Mutation	SNP	T	T	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	7	92763145	92763145	T	C	SNP	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	missense	c.2140	p.S714G	0.001	NULL	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409	tier1	-	-	53	0	0.00	39	5	11.36
SCAPER	0	genome.wustl.edu	37	15	76797222	76797222	+	Missense_Mutation	SNP	T	T	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	15	76797222	76797222	T	C	SNP	SCAPER	ENST00000324767	human	ensembl	74_37	-1	known	missense	c.2932	p.T978A	1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	tier1	-	-	77	0	0.00	71	4	5.33
SDSL	0	genome.wustl.edu	37	12	113873214	113873214	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	113873214	113873214	G	A	SNP	SDSL	ENST00000345635	human	ensembl	74_37	+1	known	missense	c.524	p.G175D	1.000	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	SDSL	HGNC	ENSG00000139410	tier1	-	-	167	0	0.00	121	29	19.21
SEMA5B	0	genome.wustl.edu	37	3	122631065	122631065	+	Silent	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	3	122631065	122631065	G	T	SNP	SEMA5B	ENST00000451055	human	ensembl	74_37	-1	known	silent	c.3012	p.L1004	0.685	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684				42	0	0.00	23	2	8.00
SFT2D2	0	genome.wustl.edu	37	1	168205836	168205836	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	168205836	168205836	G	A	SNP	SFT2D2	ENST00000271375	human	ensembl	74_37	+1	known	missense	c.328	p.A110T	0.005	pfam_Vesicle_transpt_Got1/SFT2	pfam_Vesicle_transpt_Got1/SFT2	-	no_errors	SFT2D2	HGNC	ENSG00000213064				75	0	0.00	60	4	6.25
SIPA1L1	0	genome.wustl.edu	37	14	72202017	72202017	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	14	72202017	72202017	G	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.5095	p.A1699S	1.000	pfam_DUF3401	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	tier1	-	-	74	0	0.00	55	4	6.78
SLC10A6	0	genome.wustl.edu	37	4	87769942	87769943	+	Frame_Shift_Ins	INS	-	-	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	4	87769942	87769943	-	C	INS	SLC10A6	ENST00000273905	human	ensembl	74_37	-1	known	frame_shift_ins	c.327_326	p.T110fs	0.221:1.000	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A6	HGNC	ENSG00000145283	tier1			54	0	0.00	29	3	9.38
SLC12A7	0	genome.wustl.edu	37	5	1078124	1078125	+	Splice_Site	INS	-	-	GCAG			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	5	1078124	1078125	-	GCAG	INS	SLC12A7	ENST00000264930	human	ensembl	74_37	-1	known	splice_site_ins	c.1455-3_1455-2	e12-2	1.000:0.971	-	-	-	no_errors	SLC12A7	HGNC	ENSG00000113504	tier1			15	0	0.00	8	5	38.46
SLC26A3	0	genome.wustl.edu	37	7	107408329	107408329	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	7	107408329	107408329	C	T	SNP	SLC26A3	ENST00000340010	human	ensembl	74_37	-1	known	missense	c.2087	p.R696Q	0.425	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A3	HGNC	ENSG00000091138				26	0	0.00	24	2	7.69
SLC4A4	0	genome.wustl.edu	37	4	72338536	72338536	+	Silent	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	4	72338536	72338536	G	T	SNP	SLC4A4	ENST00000425175	human	ensembl	74_37	+1	known	silent	c.1752	p.T584	0.001	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	tier1	-	-	82	0	0.00	66	4	5.71
SLC5A5	0	genome.wustl.edu	37	19	17988836	17988836	+	Silent	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	19	17988836	17988836	C	T	SNP	SLC5A5	ENST00000222248	human	ensembl	74_37	+1	known	silent	c.903	p.I301	0.295	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641	tier1	-	-	47	0	0.00	38	8	17.39
SLC9A7P1	0	genome.wustl.edu	37	12	98849257	98849257	+	RNA	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	98849257	98849257	C	T	SNP	SLC9A7P1	ENST00000554295	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.702	-	-	-	no_errors	SLC9A7P1	HGNC	ENSG00000227825				64	0	0.00	47	3	6.00
SMIM11	0	genome.wustl.edu	37	21	35757784	35757784	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	21	35757784	35757784	G	T	SNP	SMIM11	ENST00000399292	human	ensembl	74_37	+1	known	missense	c.21	p.E7D	0.037	NULL	NULL	-	no_errors	SMIM11	HGNC	ENSG00000205670				42	0	0.00	39	4	9.30
SMIM7	0	genome.wustl.edu	37	19	16757446	16757446	+	RNA	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	19	16757446	16757446	C	T	SNP	SMIM7	ENST00000397349	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SMIM7	HGNC	ENSG00000214046	tier1	-	-	25	0	0.00	14	7	33.33
SNTG2	0	genome.wustl.edu	37	2	1079214	1079214	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	1079214	1079214	C	A	SNP	SNTG2	ENST00000308624	human	ensembl	74_37	+1	known	missense	c.83	p.T28N	0.711	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SNTG2	HGNC	ENSG00000172554	tier1	-	-	76	0	0.00	68	4	5.56
SPEG	0	genome.wustl.edu	37	2	220348119	220348119	+	Silent	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	220348119	220348119	G	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	silent	c.5934	p.R1978	0.993	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195	tier1	-	-	48	0	0.00	36	6	14.29
SULF2	0	genome.wustl.edu	37	20	46365616	46365616	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	20	46365616	46365616	G	T	SNP	SULF2	ENST00000359930	human	ensembl	74_37	-1	known	missense	c.246	p.F82L	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF2	HGNC	ENSG00000196562				41	0	0.00	46	3	6.12
SWAP70	0	genome.wustl.edu	37	11	9761755	9761755	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	11	9761755	9761755	G	T	SNP	SWAP70	ENST00000318950	human	ensembl	74_37	+1	known	missense	c.1216	p.A406S	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_EF_hand_dom,pfscan_Pleckstrin_homology	-	no_errors	SWAP70	HGNC	ENSG00000133789				45	0	0.00	49	3	5.77
SYMPK	0	genome.wustl.edu	37	19	46326035	46326035	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	19	46326035	46326035	G	T	SNP	SYMPK	ENST00000245934	human	ensembl	74_37	-1	known	missense	c.2770	p.R924S	1.000	pfam_Symplekin_C,superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755				39	0	0.00	35	2	5.41
SYT6	0	genome.wustl.edu	37	1	114682356	114682356	+	Silent	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	114682356	114682356	G	T	SNP	SYT6	ENST00000393296	human	ensembl	74_37	-1	known	silent	c.393	p.A131	0.001	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207				43	0	0.00	37	2	5.13
TARBP2	0	genome.wustl.edu	37	12	53898476	53898476	+	Silent	SNP	T	T	C			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	53898476	53898476	T	C	SNP	TARBP2	ENST00000549572	human	ensembl	74_37	+1	known	silent	c.513	p.L171	0.000	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	TARBP2	HGNC	ENSG00000139546	tier1	-	-	50	0	0.00	33	4	10.81
TDRD9	0	genome.wustl.edu	37	14	104457534	104457534	+	Nonsense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	14	104457534	104457534	C	T	SNP	TDRD9	ENST00000409874	human	ensembl	74_37	+1	known	nonsense	c.1153	p.R385*	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TDRD9	HGNC	ENSG00000156414	tier1	-	-	130	0	0.00	119	9	7.03
TEKT2	0	genome.wustl.edu	37	1	36551545	36551545	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	36551545	36551545	G	T	SNP	TEKT2	ENST00000207457	human	ensembl	74_37	+1	known	missense	c.391	p.D131Y	1.000	pfam_Tektin	pfam_Tektin,superfamily_Prefoldin,prints_Tektin	-	no_errors	TEKT2	HGNC	ENSG00000092850				32	0	0.00	51	3	5.56
TMEM101	0	genome.wustl.edu	37	17	42089360	42089360	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	17	42089360	42089360	A	G	SNP	TMEM101	ENST00000206380	human	ensembl	74_37	-1	known	missense	c.710	p.M237T	1.000	NULL	NULL	-	no_errors	TMEM101	HGNC	ENSG00000091947				41	0	0.00	33	3	8.33
TMEM14B	0	genome.wustl.edu	37	6	10751375	10751375	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	6	10751375	10751375	C	T	SNP	TMEM14B	ENST00000379542	human	ensembl	74_37	+1	known	missense	c.110	p.P37L	0.997	pfam_UPF0136_TM	pfam_UPF0136_TM	-	no_errors	TMEM14B	HGNC	ENSG00000137210	tier1	-	-	99	0	0.00	106	12	10.17
TMEM52B	0	genome.wustl.edu	37	12	10342518	10342518	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	12	10342518	10342518	G	T	SNP	TMEM52B	ENST00000381923	human	ensembl	74_37	+1	known	missense	c.331	p.A111S	1.000	NULL	NULL	-	no_errors	TMEM52B	HGNC	ENSG00000165685	tier1	-	-	39	0	0.00	53	4	7.02
TNFRSF10A	0	genome.wustl.edu	37	8	23049386	23049386	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	8	23049386	23049386	C	T	SNP	TNFRSF10A	ENST00000221132	human	ensembl	74_37	-1	known	missense	c.1228	p.A410T	0.001	pirsf_TNFR_10,pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pirsf_TNFR_10,pfam_Death_domain,pfam_TNFR/NGFR_Cys_rich_reg,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,prints_TNFR_10,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF10A	HGNC	ENSG00000104689				74	0	0.00	66	4	5.71
TNN	0	genome.wustl.edu	37	1	175049324	175049324	+	Silent	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	175049324	175049324	G	A	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	silent	c.810	p.L270	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	tier1	-	-	42	0	0.00	22	3	12.00
TP53	0	genome.wustl.edu	37	17	7577498	7577498	+	Splice_Site	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	17	7577498	7577498	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.782+1	e6+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	75	0	0.00	48	6	11.11
TRDN	0	genome.wustl.edu	37	6	123786032	123786033	+	Frame_Shift_Ins	INS	-	-	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	6	123786032	123786033	-	A	INS	TRDN	ENST00000546248	human	ensembl	74_37	-1	known	frame_shift_ins	c.890_889	p.S297fs	0.000:0.000	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439	tier1			37	0	0.00	25	6	19.35
TRDN	0	genome.wustl.edu	37	6	123714810	123714810	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	6	123714810	123714810	G	T	SNP	TRDN	ENST00000398178	human	ensembl	74_37	-1	known	missense	c.1064	p.A355D	0.310	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439				56	0	0.00	65	4	5.80
TRMT6	0	genome.wustl.edu	37	20	5923415	5923415	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	20	5923415	5923415	G	T	SNP	TRMT6	ENST00000203001	human	ensembl	74_37	-1	known	missense	c.685	p.Q229K	1.000	pfam_EIF3_gamma,pirsf_tRNA_m1A_mtfrase	pfam_EIF3_gamma,pirsf_tRNA_m1A_mtfrase	-	no_errors	TRMT6	HGNC	ENSG00000089195				37	0	0.00	40	4	9.09
TUBB1	0	genome.wustl.edu	37	20	57599479	57599479	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	20	57599479	57599479	G	A	SNP	TUBB1	ENST00000217133	human	ensembl	74_37	+1	known	missense	c.997	p.V333M	0.938	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB1	HGNC	ENSG00000101162	tier1	-	-	76	0	0.00	71	7	8.97
TYMS	0	genome.wustl.edu	37	18	657939	657939	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	18	657939	657939	G	T	SNP	TYMS	ENST00000323274	human	ensembl	74_37	+1	known	missense	c.197	p.S66I	0.999	pfam_Thymidylate_synthase,superfamily_Thymidate_synth/dCMP_Mease	pfam_Thymidylate_synthase,superfamily_Thymidate_synth/dCMP_Mease,prints_Thymidylate_synthase,tigrfam_Thymidylate_synthase	-	no_errors	TYMS	HGNC	ENSG00000176890				45	0	0.00	30	2	6.25
UGT3A2	0	genome.wustl.edu	37	5	36037942	36037942	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	5	36037942	36037942	C	T	SNP	UGT3A2	ENST00000282507	human	ensembl	74_37	-1	known	missense	c.1252	p.E418K	0.947	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A2	HGNC	ENSG00000168671	tier1	-	-	78	0	0.00	59	10	14.49
USP9X	0	genome.wustl.edu	37	X	41084051	41084051	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	X	41084051	41084051	C	T	SNP	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	missense	c.6808	p.P2270S	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486	tier1	-	-	35	0	0.00	46	4	8.00
WASL	0	genome.wustl.edu	37	7	123332839	123332841	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	7	123332839	123332841	AGG	-	DEL	WASL	ENST00000223023	human	ensembl	74_37	-1	known	in_frame_del	c.909_907	p.P303in_frame_del	0.996:1.000:1.000	superfamily_WASP_C	pfam_WH1/EVH1,pfam_CRIB_dom,pfam_WH2_dom,superfamily_WASP_C,smart_WH1/EVH1,smart_CRIB_dom,smart_WH2_dom,pfscan_CRIB_dom,pfscan_WH1/EVH1,pfscan_WH2_dom	-	no_errors	WASL	HGNC	ENSG00000106299	tier1			52	0	0.00	39	5	11.36
WDR27	0	genome.wustl.edu	37	6	170043854	170043854	+	Silent	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	6	170043854	170043854	C	T	SNP	WDR27	ENST00000448612	human	ensembl	74_37	-1	known	silent	c.1686	p.L562	0.867	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR27	HGNC	ENSG00000184465	tier1	-	-	34	0	0.00	47	4	7.84
WDR65	0	genome.wustl.edu	37	1	43675420	43675420	+	Nonsense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	43675420	43675420	C	T	SNP	WDR65	ENST00000528956	human	ensembl	74_37	+1	known	nonsense	c.1762	p.R588*	1.000	superfamily_Quinonprotein_ADH-like_supfam	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR65	HGNC	ENSG00000243710				39	0	0.00	32	2	5.88
XIST	0	genome.wustl.edu	37	X	73042914	73042914	+	RNA	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	X	73042914	73042914	C	A	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	XIST	HGNC	ENSG00000229807	tier1	-	-	83	0	0.00	62	12	16.22
XIST	0	genome.wustl.edu	37	X	73062049	73062049	+	RNA	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	X	73062049	73062049	C	A	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	XIST	HGNC	ENSG00000229807	tier1	-	-	34	0	0.00	21	6	22.22
YES1	0	genome.wustl.edu	37	18	745953	745953	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	18	745953	745953	G	T	SNP	YES1	ENST00000314574	human	ensembl	74_37	-1	known	missense	c.569	p.T190N	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	YES1	HGNC	ENSG00000176105	tier1	-	-	94	0	0.00	79	5	5.95
ZC3H11A	0	genome.wustl.edu	37	1	203799261	203799261	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	1	203799261	203799261	G	T	SNP	ZC3H11A	ENST00000332127	human	ensembl	74_37	+1	known	missense	c.630	p.L210F	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673	tier1	-	-	84	0	0.00	78	6	7.14
ZFP41	0	genome.wustl.edu	37	8	144332324	144332324	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	8	144332324	144332324	G	T	SNP	ZFP41	ENST00000330701	human	ensembl	74_37	+1	known	missense	c.311	p.R104L	0.023	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP41	HGNC	ENSG00000181638				40	0	0.00	42	3	6.67
ZFPM2	0	genome.wustl.edu	37	8	106811081	106811081	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	8	106811081	106811081	G	A	SNP	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	missense	c.869	p.S290N	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				63	0	0.00	46	3	6.12
ZMAT5	0	genome.wustl.edu	37	22	30144477	30144477	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	22	30144477	30144477	G	T	SNP	ZMAT5	ENST00000344318	human	ensembl	74_37	-1	known	missense	c.57	p.H19Q	1.000	pfam_Znf_U1-C	pfam_Znf_CCCH,pfam_Znf_U1-C,smart_Znf_CCCH	-	no_errors	ZMAT5	HGNC	ENSG00000100319	tier1	-	-	53	0	0.00	54	4	6.90
ZNF192P1	0	genome.wustl.edu	37	6	28134339	28134339	+	RNA	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	6	28134339	28134339	G	T	SNP	ZNF192P1	ENST00000440790	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	ZNF192P1	HGNC	ENSG00000226314	tier1	-	-	35	0	0.00	32	4	11.11
ZNF287	0	genome.wustl.edu	37	17	16456419	16456419	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	17	16456419	16456419	C	T	SNP	ZNF287	ENST00000395824	human	ensembl	74_37	-1	known	missense	c.1037	p.R346K	0.798	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF287	HGNC	ENSG00000141040	tier1	-	-	50	0	0.00	43	4	8.51
ZNF397	0	genome.wustl.edu	37	18	32822582	32822582	+	Missense_Mutation	SNP	C	C	G			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	18	32822582	32822582	C	G	SNP	ZNF397	ENST00000330501	human	ensembl	74_37	+1	known	missense	c.148	p.R50G	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF397	HGNC	ENSG00000186812	tier1	-	-	61	0	0.00	49	5	9.26
ZNF547	0	genome.wustl.edu	37	19	57888904	57888904	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	19	57888904	57888904	G	T	SNP	ZNF547	ENST00000282282	human	ensembl	74_37	+1	known	missense	c.560	p.S187I	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF547	HGNC	ENSG00000152433				64	0	0.00	47	3	6.00
ZNF736	0	genome.wustl.edu	37	7	63808652	63808652	+	Silent	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	7	63808652	63808652	G	A	SNP	ZNF736	ENST00000355095	human	ensembl	74_37	+1	known	silent	c.411	p.L137	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF736	HGNC	ENSG00000234444	tier1	-	-	69	0	0.00	72	4	5.26
ZNF775	0	genome.wustl.edu	37	7	150093717	150093717	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	7	150093717	150093717	G	A	SNP	ZNF775	ENST00000329630	human	ensembl	74_37	+1	known	missense	c.148	p.G50S	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF775	HGNC	ENSG00000196456				39	0	0.00	54	4	6.90
ZNF804A	0	genome.wustl.edu	37	2	185802855	185802855	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	2	185802855	185802855	C	A	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	missense	c.2732	p.S911Y	0.001	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				45	0	0.00	46	3	6.12
ZNF829	0	genome.wustl.edu	37	19	37382574	37382574	+	Silent	SNP	G	G	T			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	19	37382574	37382574	G	T	SNP	ZNF829	ENST00000520965	human	ensembl	74_37	-1	known	silent	c.1362	p.I454	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF829	HGNC	ENSG00000185869	tier1	-	-	68	0	0.00	76	4	5.00
ZSCAN9	0	genome.wustl.edu	37	6	28200447	28200447	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A939-01A-12D-A37C-09	TCGA-JY-A939-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e215fdc7-0015-459e-915c-b51c6b2106e4	7efc7e5e-31ae-45cd-a03a-936dd92b52ef	6	28200447	28200447	C	A	SNP	ZSCAN9	ENST00000252207	human	ensembl	74_37	+1	known	missense	c.676	p.Q226K	0.001	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN9	HGNC	ENSG00000137185	tier1	-	-	43	0	0.00	36	4	10.00
