Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
A4GALT	0	genome.wustl.edu	37	22	43089313	43089313	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	22	43089313	43089313	G	A	SNP	A4GALT	ENST00000249005	human	ensembl	74_37	-1	known	silent	c.645	p.V215	0.987	NULL	pfam_A1-4-GlycosylTfrase_dom,pfam_GlycoTrfase_DXD_sugar-bd_CS	-	no_errors	A4GALT	HGNC	ENSG00000128274	tier1	-	-	20	0	0.00	15	24	61.54
AASS	0	genome.wustl.edu	37	7	121753716	121753716	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	121753716	121753716	C	A	SNP	AASS	ENST00000393376	human	ensembl	74_37	-1	known	nonsense	c.1102	p.E368*	1.000	pfam_AlaDH/PNT_NAD(H)-bd	pfam_Saccharopine_DH/HSpermid_syn,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N	-	no_errors	AASS	HGNC	ENSG00000008311				16	0	0.00	27	2	6.90
ABCA12	0	genome.wustl.edu	37	2	215821415	215821415	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	215821415	215821415	C	T	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.6205	p.A2069T	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	tier1	-	-	21	0	0.00	49	25	33.78
ABCG8	0	genome.wustl.edu	37	2	44104795	44104795	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	44104795	44104795	G	A	SNP	ABCG8	ENST00000272286	human	ensembl	74_37	+1	known	missense	c.1852	p.G618R	0.787	NULL	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	-	no_errors	ABCG8	HGNC	ENSG00000143921	tier1	rs200005264	-	24	0	0.00	45	10	18.18
ACTA2	0	genome.wustl.edu	37	10	90697872	90697872	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	90697872	90697872	G	A	SNP	ACTA2	ENST00000224784	human	ensembl	74_37	-1	known	silent	c.936	p.A312	0.016	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTA2	HGNC	ENSG00000107796				24	0	0.00	69	4	5.48
ACTN2	0	genome.wustl.edu	37	1	236908054	236908054	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	236908054	236908054	G	T	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	missense	c.1384	p.A462S	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522	tier1	-	-	13	0	0.00	33	15	31.25
ADAMTS9	0	genome.wustl.edu	37	3	64672417	64672417	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	64672417	64672417	C	T	SNP	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	missense	c.343	p.A115T	1.000	pfam_Peptidase_M12B_N	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638				14	0	0.00	57	3	5.00
ADCY2	0	genome.wustl.edu	37	5	7802384	7802384	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	7802384	7802384	G	A	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	silent	c.2682	p.P894	0.961	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				9	0	0.00	73	4	5.19
AGPAT4	0	genome.wustl.edu	37	6	161653235	161653235	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	161653235	161653235	G	A	SNP	AGPAT4	ENST00000320285	human	ensembl	74_37	-1	known	missense	c.11	p.A4V	0.001	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	AGPAT4	HGNC	ENSG00000026652				10	0	0.00	19	3	13.64
AHCYL1	0	genome.wustl.edu	37	1	110527695	110527695	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	110527695	110527695	G	T	SNP	AHCYL1	ENST00000369799	human	ensembl	74_37	+1	known	missense	c.21	p.M7I	1.000	NULL	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL1	HGNC	ENSG00000168710				9	0	0.00	51	7	12.07
AKT1S1	0	genome.wustl.edu	37	19	50381506	50381506	+	RNA	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	50381506	50381506	G	T	SNP	AKT1S1	ENST00000482622	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AKT1S1	HGNC	ENSG00000204673	tier1	-	-	12	0	0.00	27	7	20.59
ALK	0	genome.wustl.edu	37	2	29754905	29754905	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	29754905	29754905	G	A	SNP	ALK	ENST00000389048	human	ensembl	74_37	-1	known	missense	c.1030	p.H344Y	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,pfscan_MAM_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094				8	0	0.00	22	6	20.69
AMY2A	0	genome.wustl.edu	37	1	104163266	104163266	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	104163266	104163266	G	A	SNP	AMY2A	ENST00000414303	human	ensembl	74_37	+1	known	missense	c.838	p.V280I	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2A	HGNC	ENSG00000243480	tier1	rs141685988	-	25	0	0.00	312	49	13.50
ANKFY1	0	genome.wustl.edu	37	17	4071177	4071177	+	Missense_Mutation	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	4071177	4071177	T	C	SNP	ANKFY1	ENST00000570535	human	ensembl	74_37	-1	known	missense	c.3532	p.K1178E	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722				13	0	0.00	44	4	8.33
ANKRD24	0	genome.wustl.edu	37	19	4217407	4217407	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	4217407	4217407	C	T	SNP	ANKRD24	ENST00000318934	human	ensembl	74_37	+1	known	silent	c.2250	p.A750	0.087	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD24	HGNC	ENSG00000089847	tier1	-	-	8	0	0.00	19	34	64.15
ANKRD50	0	genome.wustl.edu	37	4	125591185	125591185	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	4	125591185	125591185	G	A	SNP	ANKRD50	ENST00000504087	human	ensembl	74_37	-1	known	missense	c.3247	p.R1083C	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD50	HGNC	ENSG00000151458				14	0	0.00	33	2	5.71
AP4S1	0	genome.wustl.edu	37	14	31554030	31554030	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	14	31554030	31554030	G	T	SNP	AP4S1	ENST00000216366	human	ensembl	74_37	+1	known	missense	c.422	p.C141F	0.005	pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP4S1	HGNC	ENSG00000100478				22	0	0.00	56	4	6.67
ARHGEF25	0	genome.wustl.edu	37	12	58009787	58009788	+	Frame_Shift_Ins	INS	-	-	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	12	58009787	58009788	-	T	INS	ARHGEF25	ENST00000333972	human	ensembl	74_37	+1	known	frame_shift_ins	c.1524_1525	p.D508fs	1.000:1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF25	HGNC	ENSG00000240771	tier1			10	0	0.00	12	5	29.41
ARHGEF37	0	genome.wustl.edu	37	5	148980732	148980732	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	148980732	148980732	G	T	SNP	ARHGEF37	ENST00000333677	human	ensembl	74_37	+1	known	missense	c.248	p.S83I	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF37	HGNC	ENSG00000183111				10	0	0.00	36	4	10.00
ARIH2	0	genome.wustl.edu	37	3	48964987	48964987	+	RNA	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	48964987	48964987	C	T	SNP	ARIH2	ENST00000463204	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.957	-	-	-	no_errors	ARIH2	HGNC	ENSG00000177479	tier1	-	-	20	0	0.00	28	10	26.32
ASTN2	0	genome.wustl.edu	37	9	119977005	119977005	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	9	119977005	119977005	A	G	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.647	p.L216P	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				8	0	0.00	10	3	23.08
ATP2B2	0	genome.wustl.edu	37	3	10370804	10370804	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	10370804	10370804	G	A	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	silent	c.3426	p.R1142	0.998	pfam_ATP_Ca_trans_C	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087	tier1	-	-	18	0	0.00	31	7	18.42
ATRNL1	0	genome.wustl.edu	37	10	117704175	117704175	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	117704175	117704175	C	T	SNP	ATRNL1	ENST00000355044	human	ensembl	74_37	+1	known	missense	c.4025	p.A1342V	1.000	NULL	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518				20	0	0.00	74	4	5.13
AURKA	0	genome.wustl.edu	37	20	54961428	54961428	+	Missense_Mutation	SNP	G	G	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	20	54961428	54961428	G	C	SNP	AURKA	ENST00000312783	human	ensembl	74_37	-1	known	missense	c.204	p.H68Q	0.001	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AURKA	HGNC	ENSG00000087586	tier1	-	-	25	0	0.00	57	13	18.57
AUTS2	0	genome.wustl.edu	37	7	70254831	70254831	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	70254831	70254831	C	T	SNP	AUTS2	ENST00000342771	human	ensembl	74_37	+1	known	missense	c.2629	p.R877W	0.987	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	tier1	-	-	16	0	0.00	56	15	20.83
BAGE2	0	genome.wustl.edu	37	21	11039406	11039406	+	RNA	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	21	11039406	11039406	T	C	SNP	BAGE2	ENST00000470054	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.934	-	-	-	no_errors	BAGE2	HGNC	ENSG00000187172	tier1	rs8134740	-	42	0	0.00	164	9	5.20
BAP1	0	genome.wustl.edu	37	3	52439267	52439267	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	52439267	52439267	G	A	SNP	BAP1	ENST00000460680	human	ensembl	74_37	-1	known	silent	c.975	p.S325	0.839	NULL	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930	tier1	-	-	13	0	0.00	35	8	18.60
BMS1P8	0	genome.wustl.edu	37	16	33497230	33497230	+	RNA	SNP	A	A	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	33497230	33497230	A	C	SNP	BMS1P8	ENST00000565156	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	BMS1P8	HGNC	ENSG00000260518	tier1	rs28409390	-	12	0	0.00	39	14	26.42
BMS1P8	0	genome.wustl.edu	37	16	33497373	33497373	+	RNA	SNP	G	G	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	33497373	33497373	G	C	SNP	BMS1P8	ENST00000565156	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	BMS1P8	HGNC	ENSG00000260518	tier1	rs62029824	-	22	0	0.00	71	22	23.66
BOLA3	0	genome.wustl.edu	37	2	74362706	74362706	+	Silent	SNP	C	C	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	74362706	74362706	C	A	SNP	BOLA3	ENST00000295326	human	ensembl	74_37	-1	known	silent	c.249	p.L83	0.005	NULL	NULL	-	no_errors	BOLA3	HGNC	ENSG00000163170				12	0	0.00	53	6	10.17
C10orf112	0	genome.wustl.edu	37	10	19777950	19777950	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	19777950	19777950	G	A	SNP	C10orf112	ENST00000454679	human	ensembl	74_37	+1	known	missense	c.2975	p.R992H	0.297	NULL	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_LDrepeatLR_classA_rpt,prints_MAM_dom	-	no_errors	C10orf112	HGNC	ENSG00000204740				18	0	0.00	95	10	9.52
C10orf90	0	genome.wustl.edu	37	10	128193341	128193341	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	128193341	128193341	G	A	SNP	C10orf90	ENST00000544758	human	ensembl	74_37	-1	known	missense	c.719	p.T240M	0.994	NULL	NULL	-	no_errors	C10orf90	HGNC	ENSG00000154493				13	0	0.00	48	8	14.29
C16orf70	0	genome.wustl.edu	37	16	67166782	67166782	+	Silent	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	67166782	67166782	T	C	SNP	C16orf70	ENST00000219139	human	ensembl	74_37	+1	known	silent	c.418	p.L140	1.000	pfam_UPF0183	pfam_UPF0183	-	no_errors	C16orf70	HGNC	ENSG00000125149	tier1	-	-	28	0	0.00	61	12	16.44
C20orf26	0	genome.wustl.edu	37	20	20180466	20180466	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	20	20180466	20180466	G	A	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	missense	c.1852	p.V618M	1.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				13	0	0.00	50	7	12.28
C9orf131	0	genome.wustl.edu	37	9	35045009	35045009	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	9	35045009	35045009	C	T	SNP	C9orf131	ENST00000312292	human	ensembl	74_37	+1	known	missense	c.2383	p.R795W	0.382	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038				14	0	0.00	31	3	8.82
CACNA2D3-AS1	0	genome.wustl.edu	37	3	54912965	54912965	+	RNA	SNP	C	C	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	54912965	54912965	C	A	SNP	CACNA2D3-AS1	ENST00000471265	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CACNA2D3-AS1	HGNC	ENSG00000243715	tier1	-	-	10	0	0.00	32	10	23.81
CACNA2D3-AS1	0	genome.wustl.edu	37	3	54912966	54912966	+	RNA	SNP	T	T	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	54912966	54912966	T	A	SNP	CACNA2D3-AS1	ENST00000471265	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CACNA2D3-AS1	HGNC	ENSG00000243715	tier1	-	-	10	0	0.00	33	11	25.00
CASP12	0	genome.wustl.edu	37	11	104762130	104762130	+	Missense_Mutation	SNP	T	T	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	104762130	104762130	T	A	SNP	CASP12	ENST00000375726	human	ensembl	74_37	-1	known	missense	c.434	p.E145V	1.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP12	HGNC	ENSG00000204403	tier1	-	-	11	0	0.00	64	16	20.00
CASP12	0	genome.wustl.edu	37	11	104762131	104762131	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	104762131	104762131	C	A	SNP	CASP12	ENST00000375726	human	ensembl	74_37	-1	known	nonsense	c.433	p.E145*	1.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP12	HGNC	ENSG00000204403	tier1	-	-	11	0	0.00	65	16	19.75
CASZ1	0	genome.wustl.edu	37	1	10725216	10725216	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	10725216	10725216	G	A	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	silent	c.429	p.G143	0.835	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	tier1	-	-	19	0	0.00	55	13	19.12
CCDC12	0	genome.wustl.edu	37	3	46965112	46965112	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	46965112	46965112	G	A	SNP	CCDC12	ENST00000292314	human	ensembl	74_37	-1	known	silent	c.330	p.P110	0.006	pfam_mRNA_splic_Cwf18	pfam_mRNA_splic_Cwf18	-	no_errors	CCDC12	HGNC	ENSG00000160799	tier1	-	-	21	0	0.00	18	11	37.93
CCDC88C	0	genome.wustl.edu	37	14	91773422	91773422	+	Missense_Mutation	SNP	A	A	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	14	91773422	91773422	A	T	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	missense	c.3155	p.L1052H	1.000	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				11	0	0.00	19	3	13.64
CCNJL	0	genome.wustl.edu	37	5	159696549	159696549	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	159696549	159696549	G	A	SNP	CCNJL	ENST00000505287	human	ensembl	74_37	-1	known	missense	c.418	p.R140W	0.000	pfam_Cyclin_N,superfamily_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like	-	no_errors	CCNJL	HGNC	ENSG00000135083	tier1	-	-	15	0	0.00	34	10	22.73
CDC42	0	genome.wustl.edu	37	1	22416504	22416504	+	Missense_Mutation	SNP	A	A	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	22416504	22416504	A	T	SNP	CDC42	ENST00000315554	human	ensembl	74_37	+1	known	missense	c.555	p.K185N	1.000	superfamily_P-loop_NTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	CDC42	HGNC	ENSG00000070831				15	0	0.00	75	4	5.06
CDC42BPB	0	genome.wustl.edu	37	14	103433470	103433470	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	14	103433470	103433470	C	T	SNP	CDC42BPB	ENST00000361246	human	ensembl	74_37	-1	known	missense	c.2384	p.R795K	1.000	NULL	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	CDC42BPB	HGNC	ENSG00000198752				8	0	0.00	42	4	8.70
CENPL	0	genome.wustl.edu	37	1	173776428	173776428	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	173776428	173776428	C	T	SNP	CENPL	ENST00000356198	human	ensembl	74_37	-1	known	missense	c.397	p.D133N	0.997	NULL	NULL	-	no_errors	CENPL	HGNC	ENSG00000120334	tier1	rs144722707	-	17	0	0.00	82	37	31.09
CENPQ	0	genome.wustl.edu	37	6	49439801	49439801	+	Missense_Mutation	SNP	A	A	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	49439801	49439801	A	T	SNP	CENPQ	ENST00000335783	human	ensembl	74_37	+1	known	missense	c.183	p.K61N	0.958	NULL	NULL	-	no_errors	CENPQ	HGNC	ENSG00000031691	tier1	-	-	8	0	0.00	42	13	23.64
CEP41	0	genome.wustl.edu	37	7	130039882	130039882	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	130039882	130039882	G	T	SNP	CEP41	ENST00000223208	human	ensembl	74_37	-1	known	missense	c.971	p.P324H	0.905	NULL	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	CEP41	HGNC	ENSG00000106477				9	0	0.00	56	3	5.08
CHD5	0	genome.wustl.edu	37	1	6191703	6191703	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	6191703	6191703	C	T	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	missense	c.3250	p.D1084N	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				15	0	0.00	48	3	5.88
CHD9	0	genome.wustl.edu	37	16	53358004	53358004	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	53358004	53358004	G	A	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	missense	c.7891	p.G2631R	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	tier1	-	-	19	0	0.00	44	20	31.25
CHRNA4	0	genome.wustl.edu	37	20	61981753	61981753	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	20	61981753	61981753	G	A	SNP	CHRNA4	ENST00000370263	human	ensembl	74_37	-1	known	missense	c.1010	p.T337M	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA4	HGNC	ENSG00000101204	tier1	rs201673381	-	18	0	0.00	40	9	18.00
CIC	0	genome.wustl.edu	37	19	42792111	42792112	+	Frame_Shift_Ins	INS	-	-	GCTG			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	42792111	42792112	-	GCTG	INS	CIC	ENST00000575354	human	ensembl	74_37	+1	known	frame_shift_ins	c.915_916	p.A306fs	0.993:0.993	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432	tier1			10	0	0.00	27	9	25.00
CKAP5	0	genome.wustl.edu	37	11	46829606	46829606	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	46829606	46829606	G	T	SNP	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	missense	c.953	p.A318E	1.000	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,superfamily_Homing_endonucl,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216				21	0	0.00	77	5	6.10
CLEC9A	0	genome.wustl.edu	37	12	10205420	10205421	+	RNA	INS	-	-	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	12	10205420	10205421	-	T	INS	CLEC9A	ENST00000544751	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CLEC9A	HGNC	ENSG00000197992	tier1			11	0	0.00	29	4	12.12
CLEC9A	0	genome.wustl.edu	37	12	10205420	10205421	+	RNA	INS	-	-	TT			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	12	10205420	10205421	-	TT	INS	CLEC9A	ENST00000544751	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CLEC9A	HGNC	ENSG00000197992	tier1			11	0	0.00	31	2	6.06
CLIP4	0	genome.wustl.edu	37	2	29386778	29386778	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	29386778	29386778	C	A	SNP	CLIP4	ENST00000320081	human	ensembl	74_37	+1	known	missense	c.1616	p.S539Y	0.998	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295				14	0	0.00	45	6	11.76
CMYA5	0	genome.wustl.edu	37	5	79027241	79027241	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	79027241	79027241	G	A	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.2653	p.E885K	0.055	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	tier1	-	-	9	0	0.00	33	12	26.67
CNGB1	0	genome.wustl.edu	37	16	57996893	57996893	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	57996893	57996893	C	T	SNP	CNGB1	ENST00000251102	human	ensembl	74_37	-1	known	silent	c.366	p.T122	0.001	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729	tier1	-	-	37	0	0.00	90	23	20.35
CNGB3	0	genome.wustl.edu	37	8	87751944	87751944	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	8	87751944	87751944	C	T	SNP	CNGB3	ENST00000320005	human	ensembl	74_37	-1	known	silent	c.150	p.E50	0.087	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289				14	0	0.00	33	4	10.81
CNTN4	0	genome.wustl.edu	37	3	3095632	3095632	+	Missense_Mutation	SNP	G	G	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	3095632	3095632	G	C	SNP	CNTN4	ENST00000397461	human	ensembl	74_37	+1	known	missense	c.2953	p.E985Q	0.998	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN4	HGNC	ENSG00000144619				10	0	0.00	68	4	5.56
COL11A1	0	genome.wustl.edu	37	1	103364237	103364237	+	Silent	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	103364237	103364237	G	T	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	silent	c.4269	p.G1423	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718	tier1	-	-	25	0	0.00	110	21	16.03
COL16A1	0	genome.wustl.edu	37	1	32164106	32164106	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	32164106	32164106	G	T	SNP	COL16A1	ENST00000271069	human	ensembl	74_37	-1	known	missense	c.368	p.T123N	0.826	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636				25	0	0.00	55	4	6.78
COL21A1	0	genome.wustl.edu	37	6	56035613	56035613	+	Missense_Mutation	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	56035613	56035613	T	C	SNP	COL21A1	ENST00000244728	human	ensembl	74_37	-1	known	missense	c.860	p.Q287R	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL21A1	HGNC	ENSG00000124749				9	0	0.00	59	4	6.35
COL4A6	0	genome.wustl.edu	37	X	107464499	107464499	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	X	107464499	107464499	G	A	SNP	COL4A6	ENST00000372216	human	ensembl	74_37	-1	known	silent	c.253	p.L85	0.266	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	tier1	-	-	10	0	0.00	20	24	54.55
COL6A3	0	genome.wustl.edu	37	2	238263551	238263551	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	238263551	238263551	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	silent	c.6618	p.P2206	0.001	NULL	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				28	0	0.00	72	4	5.26
COMMD6	0	genome.wustl.edu	37	13	76104340	76104340	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	13	76104340	76104340	C	T	SNP	COMMD6	ENST00000355801	human	ensembl	74_37	-1	known	silent	c.117	p.K39	0.992	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD6	HGNC	ENSG00000188243				13	0	0.00	37	4	9.76
CORO1B	0	genome.wustl.edu	37	11	67210002	67210002	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	67210002	67210002	C	T	SNP	CORO1B	ENST00000341356	human	ensembl	74_37	-1	known	missense	c.98	p.R33H	1.000	pfam_DUF1899,superfamily_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1B	HGNC	ENSG00000172725				12	0	0.00	33	4	10.81
CSF2RB	0	genome.wustl.edu	37	22	37333909	37333909	+	Missense_Mutation	SNP	G	G	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	22	37333909	37333909	G	C	SNP	CSF2RB	ENST00000262825	human	ensembl	74_37	+1	known	missense	c.2077	p.D693H	0.011	pirsf_IL3_rcpt_beta	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368				18	0	0.00	54	3	5.26
CTSF	0	genome.wustl.edu	37	11	66333156	66333156	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	66333156	66333156	G	T	SNP	CTSF	ENST00000310325	human	ensembl	74_37	-1	known	missense	c.1031	p.A344D	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSF	HGNC	ENSG00000174080				17	0	0.00	62	4	6.06
CUBN	0	genome.wustl.edu	37	10	16962050	16962050	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	16962050	16962050	C	T	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.6733	p.A2245T	0.085	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				14	0	0.00	69	8	10.39
CUX2	0	genome.wustl.edu	37	12	111747999	111747999	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	12	111747999	111747999	C	T	SNP	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	silent	c.1413	p.D471	0.002	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249	tier1	-	-	30	0	0.00	64	21	24.71
CWF19L2	0	genome.wustl.edu	37	11	107299551	107299551	+	Silent	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	107299551	107299551	T	C	SNP	CWF19L2	ENST00000282251	human	ensembl	74_37	-1	known	silent	c.1407	p.L469	0.000	NULL	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L2	HGNC	ENSG00000152404	tier1	-	-	14	0	0.00	97	22	18.49
DCAF4	0	genome.wustl.edu	37	14	73406569	73406569	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	14	73406569	73406569	C	T	SNP	DCAF4	ENST00000358377	human	ensembl	74_37	+1	known	missense	c.152	p.P51L	0.037	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4	HGNC	ENSG00000119599				13	0	0.00	17	4	19.05
DCC	0	genome.wustl.edu	37	18	51025797	51025797	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	18	51025797	51025797	G	A	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.4028	p.R1343H	1.000	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				21	0	0.00	50	5	9.09
DENND2C	0	genome.wustl.edu	37	1	115167965	115167965	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	115167965	115167965	C	T	SNP	DENND2C	ENST00000393274	human	ensembl	74_37	-1	known	missense	c.641	p.R214H	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984	tier1	-	-	10	0	0.00	74	13	14.94
DFFB	0	genome.wustl.edu	37	1	3775330	3775330	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	3775330	3775330	C	T	SNP	DFFB	ENST00000378209	human	ensembl	74_37	+1	known	silent	c.163	p.L55	0.473	pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	pfam_Apoptosis_DFF40,pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	-	no_errors	DFFB	HGNC	ENSG00000169598	tier1	-	-	20	0	0.00	41	16	28.07
DIS3	0	genome.wustl.edu	37	13	73336070	73336070	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	13	73336070	73336070	G	T	SNP	DIS3	ENST00000377767	human	ensembl	74_37	-1	known	missense	c.2333	p.P778H	1.000	NULL	smart_PIN_dom	-	no_errors	DIS3	HGNC	ENSG00000083520				15	0	0.00	37	2	5.13
DLGAP2	0	genome.wustl.edu	37	8	1616580	1616580	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	8	1616580	1616580	G	T	SNP	DLGAP2	ENST00000421627	human	ensembl	74_37	+1	known	missense	c.1656	p.Q552H	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010	tier1	-	-	20	0	0.00	72	26	26.53
DMD	0	genome.wustl.edu	37	X	32328389	32328389	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	X	32328389	32328389	G	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.5927	p.T1976N	1.000	pfam_Spectrin_repeat,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				9	0	0.00	32	3	8.57
DMRTC2	0	genome.wustl.edu	37	19	42353321	42353321	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	42353321	42353321	G	A	SNP	DMRTC2	ENST00000269945	human	ensembl	74_37	+1	known	missense	c.752	p.R251H	0.627	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTC2	HGNC	ENSG00000142025	tier1	-	-	24	0	0.00	14	21	60.00
DMXL2	0	genome.wustl.edu	37	15	51742484	51742484	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	15	51742484	51742484	G	T	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.8746	p.L2916I	0.996	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				11	0	0.00	46	4	8.00
DNAH5	0	genome.wustl.edu	37	5	13752328	13752328	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	13752328	13752328	A	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.10943	p.L3648P	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	tier1	-	-	17	0	0.00	29	67	69.79
DNASE1L3	0	genome.wustl.edu	37	3	58194005	58194005	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	58194005	58194005	A	G	SNP	DNASE1L3	ENST00000318316	human	ensembl	74_37	-1	known	missense	c.170	p.V57A	0.997	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,pirsf_DNase_I,prints_DNase_I	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,pirsf_DNase_I,prints_DNase_I	-	no_errors	DNASE1L3	HGNC	ENSG00000163687				16	0	0.00	51	3	5.56
DNTTIP1	0	genome.wustl.edu	37	20	44424030	44424030	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	20	44424030	44424030	A	G	SNP	DNTTIP1	ENST00000372622	human	ensembl	74_37	+1	known	missense	c.320	p.E107G	1.000	NULL	NULL	-	no_errors	DNTTIP1	HGNC	ENSG00000101457				10	0	0.00	46	3	6.12
DPPA2	0	genome.wustl.edu	37	3	109028057	109028057	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	109028057	109028057	C	T	SNP	DPPA2	ENST00000478945	human	ensembl	74_37	-1	known	missense	c.302	p.R101Q	0.818	pfscan_SAP_dom	pfscan_SAP_dom	-	no_errors	DPPA2	HGNC	ENSG00000163530				18	0	0.00	74	4	5.13
DTX2	0	genome.wustl.edu	37	7	76111982	76111982	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	76111982	76111982	C	T	SNP	DTX2	ENST00000324432	human	ensembl	74_37	+1	known	silent	c.426	p.L142	0.027	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX2	HGNC	ENSG00000091073				25	0	0.00	85	7	7.61
DUSP10	0	genome.wustl.edu	37	1	221875950	221875950	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	221875950	221875950	A	G	SNP	DUSP10	ENST00000366899	human	ensembl	74_37	-1	known	missense	c.1253	p.I418T	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507	tier1	-	-	14	0	0.00	52	10	16.13
EDC4	0	genome.wustl.edu	37	16	67913139	67913139	+	Splice_Site	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	67913139	67913139	G	T	SNP	EDC4	ENST00000358933	human	ensembl	74_37	+1	known	splice_site	c.1469-1	e13-1	1.000	-	-	-	no_errors	EDC4	HGNC	ENSG00000038358				39	0	0.00	63	4	5.97
EFCAB12	0	genome.wustl.edu	37	3	129120636	129120636	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	129120636	129120636	G	A	SNP	EFCAB12	ENST00000326085	human	ensembl	74_37	-1	known	missense	c.1519	p.P507S	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB12	HGNC	ENSG00000172771				17	0	0.00	56	4	6.67
ENAH	0	genome.wustl.edu	37	1	225707040	225707040	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	225707040	225707040	C	T	SNP	ENAH	ENST00000366844	human	ensembl	74_37	-1	known	missense	c.662	p.R221H	0.897	NULL	pfam_WH1/EVH1,pfam_VASP_tetra,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	ENAH	HGNC	ENSG00000154380	tier1	-	-	25	0	0.00	57	11	15.94
ENSG00000176593	0	genome.wustl.edu	37	19	58513732	58513732	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	58513732	58513732	C	T	SNP	ENSG00000176593	ENST00000550135	human	ensembl	74_37	+1	putative	missense	c.254	p.P85L	0.000	NULL	NULL	-	no_errors	CTD-2368P22.1	Clone_based_vega_gene	ENSG00000176593	tier1	-	-	8	0	0.00	14	14	50.00
ENSG00000206195	0	genome.wustl.edu	37	22	16159158	16159158	+	RNA	SNP	A	A	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	22	16159158	16159158	A	G	SNP	ENSG00000206195	ENST00000383038	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	AP000525.9	Clone_based_vega_gene	ENSG00000206195	tier1	-	-	8	0	0.00	4	8	66.67
ENSG00000256341	0	genome.wustl.edu	37	11	63886079	63886079	+	RNA	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	63886079	63886079	C	T	SNP	ENSG00000256341	ENST00000543817	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	RP11-21A7A.3	Clone_based_vega_gene	ENSG00000256341	tier1	-	-	60	0	0.00	201	13	5.88
ENSG00000270433	0	genome.wustl.edu	37	14	23764732	23764733	+	RNA	INS	-	-	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	14	23764732	23764733	-	A	INS	ENSG00000270433	ENST00000604456	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.820:0.835	-	-	-	no_errors	RP11-124D2.7	Clone_based_vega_gene	ENSG00000270433	tier1			10	0	0.00	25	5	16.67
ENSG00000271894	0	genome.wustl.edu	37	2	56612188	56612188	+	RNA	DEL	T	T	-			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	56612188	56612188	T	-	DEL	ENSG00000271894	ENST00000607540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-482H16.1	Clone_based_vega_gene	ENSG00000271894	tier1			14	0	0.00	35	8	18.60
EPB41L4A	0	genome.wustl.edu	37	5	111595633	111595633	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	111595633	111595633	C	A	SNP	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	missense	c.686	p.G229V	1.000	pfam_FERM_PH-like_C,pfscan_FERM_domain,prints_Ez/rad/moesin_like	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				14	0	0.00	28	2	6.67
EPHA4	0	genome.wustl.edu	37	2	222290754	222290754	+	Silent	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	222290754	222290754	G	T	SNP	EPHA4	ENST00000281821	human	ensembl	74_37	-1	known	silent	c.2955	p.P985	0.889	NULL	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106	tier1	-	-	8	0	0.00	28	6	17.65
EPHB2	0	genome.wustl.edu	37	1	23236980	23236980	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	23236980	23236980	C	T	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	missense	c.2608	p.R870W	0.997	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				20	0	0.00	40	6	13.04
ESRRB	0	genome.wustl.edu	37	14	76965244	76965244	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	14	76965244	76965244	C	T	SNP	ESRRB	ENST00000261532	human	ensembl	74_37	+1	known	missense	c.1472	p.P491L	0.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESRRB	HGNC	ENSG00000119715				10	0	0.00	32	4	11.11
ETFA	0	genome.wustl.edu	37	15	76588003	76588003	+	Missense_Mutation	SNP	T	T	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	15	76588003	76588003	T	G	SNP	ETFA	ENST00000557943	human	ensembl	74_37	-1	known	missense	c.115	p.N39H	1.000	pfam_ETF_a/b_N,smart_ETF_a/b_N,pirsf_ETF_a	pfam_ETF_asu_C,pfam_ETF_a/b_N,smart_ETF_a/b_N,pirsf_ETF_a	-	no_errors	ETFA	HGNC	ENSG00000140374	tier1	-	-	17	0	0.00	42	15	26.32
EXOC3L1	0	genome.wustl.edu	37	16	67219282	67219282	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	67219282	67219282	C	T	SNP	EXOC3L1	ENST00000314586	human	ensembl	74_37	-1	known	silent	c.1608	p.A536	0.414	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3L1	HGNC	ENSG00000179044				8	0	0.00	54	4	6.90
FAM118B	0	genome.wustl.edu	37	11	126110726	126110726	+	Missense_Mutation	SNP	A	A	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	126110726	126110726	A	C	SNP	FAM118B	ENST00000533050	human	ensembl	74_37	+1	known	missense	c.126	p.E42D	0.989	NULL	NULL	-	no_errors	FAM118B	HGNC	ENSG00000197798	tier1	-	-	21	0	0.00	55	15	21.43
FAM90A26	0	genome.wustl.edu	37	4	9174993	9174994	+	Frame_Shift_Ins	INS	-	-	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	4	9174993	9174994	-	T	INS	FAM90A26	ENST00000432515	human	ensembl	74_37	+1	known	frame_shift_ins	c.95_96	p.P33fs	0.004:0.013	NULL	superfamily_Znf_CCHC	-	no_errors	FAM90A26	HGNC	ENSG00000229924	tier1			48	0	0.00	81	22	21.36
FAM98C	0	genome.wustl.edu	37	19	38895990	38895990	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	38895990	38895990	G	T	SNP	FAM98C	ENST00000252530	human	ensembl	74_37	+1	known	nonsense	c.562	p.E188*	0.962	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98C	HGNC	ENSG00000130244				13	0	0.00	33	2	5.71
FANCM	0	genome.wustl.edu	37	14	45668128	45668128	+	Missense_Mutation	SNP	A	A	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	14	45668128	45668128	A	T	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	missense	c.5998	p.M2000L	1.000	superfamily_RuvA_2-like	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790	tier1	-	-	9	0	0.00	19	34	64.15
FASN	0	genome.wustl.edu	37	17	80042404	80042404	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	80042404	80042404	G	A	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	missense	c.4753	p.P1585S	1.000	superfamily_GroES-like,smart_PKS_ER	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	tier1	-	-	12	0	0.00	57	11	16.18
FASN	0	genome.wustl.edu	37	17	80041136	80041136	+	Missense_Mutation	SNP	A	A	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	80041136	80041136	A	T	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	missense	c.5507	p.V1836E	1.000	smart_PKS_ER	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				20	0	0.00	42	6	12.50
FBN2	0	genome.wustl.edu	37	5	127681105	127681105	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	127681105	127681105	C	T	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.3161	p.R1054H	1.000	pirsf_FBN,superfamily_TB_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	tier1	-	-	9	0	0.00	47	14	22.95
FCGBP	0	genome.wustl.edu	37	19	40433435	40433435	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	40433435	40433435	G	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	nonsense	c.834	p.Y278*	0.010	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				12	0	0.00	33	2	5.71
FCRL3	0	genome.wustl.edu	37	1	157667559	157667559	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	157667559	157667559	G	A	SNP	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	missense	c.449	p.T150I	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL3	HGNC	ENSG00000160856	tier1	-	-	12	0	0.00	53	23	30.26
FGFR2	0	genome.wustl.edu	37	10	123245031	123245031	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	123245031	123245031	C	T	SNP	FGFR2	ENST00000457416	human	ensembl	74_37	-1	known	silent	c.2076	p.V692	1.000	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468	tier1	-	-	12	0	0.00	33	9	21.43
FKBP15	0	genome.wustl.edu	37	9	115940968	115940968	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	9	115940968	115940968	G	A	SNP	FKBP15	ENST00000238256	human	ensembl	74_37	-1	known	silent	c.2028	p.S676	0.023	superfamily_Regulat_G_prot_signal_superfam	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321				23	0	0.00	65	4	5.80
FLG	0	genome.wustl.edu	37	1	152281390	152281390	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	152281390	152281390	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.5972	p.A1991V	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	tier1	-	-	105	0	0.00	242	89	26.89
FLNB	0	genome.wustl.edu	37	3	58109286	58109286	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	58109286	58109286	C	T	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	missense	c.3593	p.T1198M	0.047	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	tier1	-	-	17	0	0.00	43	11	20.37
FOLH1B	0	genome.wustl.edu	37	11	89395322	89395322	+	RNA	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	89395322	89395322	C	T	SNP	FOLH1B	ENST00000525540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612				15	0	0.00	47	4	7.84
FOLH1B	0	genome.wustl.edu	37	11	89395333	89395333	+	RNA	SNP	A	A	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	89395333	89395333	A	G	SNP	FOLH1B	ENST00000525540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.044	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612				17	0	0.00	58	4	6.45
FOXA2	0	genome.wustl.edu	37	20	22563118	22563118	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	20	22563118	22563118	G	A	SNP	FOXA2	ENST00000419308	human	ensembl	74_37	-1	known	silent	c.762	p.Y254	1.000	pfam_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA2	HGNC	ENSG00000125798				11	0	0.00	56	7	11.11
FPGT-TNNI3K	0	genome.wustl.edu	37	1	74954920	74954920	+	Silent	SNP	C	C	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	74954920	74954920	C	A	SNP	FPGT-TNNI3K	ENST00000557284	human	ensembl	74_37	+1	known	silent	c.2511	p.L837	0.993	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FPGT-TNNI3K	HGNC	ENSG00000259030	tier1	-	-	13	0	0.00	54	22	28.95
FUBP1	0	genome.wustl.edu	37	1	78414982	78414982	+	Missense_Mutation	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	78414982	78414982	T	C	SNP	FUBP1	ENST00000436586	human	ensembl	74_37	-1	known	missense	c.1847	p.Q616R	1.000	pfam_DUF1897	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP1	HGNC	ENSG00000162613				14	0	0.00	23	3	11.54
GAA	0	genome.wustl.edu	37	17	78086727	78086727	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	78086727	78086727	C	T	SNP	GAA	ENST00000302262	human	ensembl	74_37	+1	known	silent	c.1941	p.C647	0.969	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	GAA	HGNC	ENSG00000171298	tier1	-	-	30	0	0.00	104	28	21.21
GABRG1	0	genome.wustl.edu	37	4	46060358	46060358	+	Frame_Shift_Del	DEL	A	A	-			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	4	46060358	46060358	A	0	DEL	GABRG1	ENST00000295452	human	ensembl	74_37	-1	known	frame_shift_del	c.792	p.F264fs	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285				10	0	0.00	34	7	17.07
GALNT8	0	genome.wustl.edu	37	12	4835983	4835983	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	12	4835983	4835983	C	T	SNP	GALNT8	ENST00000252318	human	ensembl	74_37	+1	known	missense	c.497	p.T166M	0.860	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT8	HGNC	ENSG00000130035	tier1	rs201255097	-	18	0	0.00	37	12	24.49
GFRA2	0	genome.wustl.edu	37	8	21552006	21552006	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	8	21552006	21552006	G	A	SNP	GFRA2	ENST00000517328	human	ensembl	74_37	-1	known	silent	c.1242	p.N414	1.000	pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt_a2	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt,prints_GDNF_rcpt_a2	-	no_errors	GFRA2	HGNC	ENSG00000168546	tier1	-	-	12	0	0.00	33	11	24.44
GK5	0	genome.wustl.edu	37	3	141944229	141944229	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	141944229	141944229	C	T	SNP	GK5	ENST00000392993	human	ensembl	74_37	-1	known	silent	c.69	p.G23	1.000	pfam_Carb_kinase_FGGY_N	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C	-	no_errors	GK5	HGNC	ENSG00000175066				8	0	0.00	33	4	10.81
GOLGA6L3	0	genome.wustl.edu	37	15	83013419	83013419	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	15	83013419	83013419	G	A	SNP	GOLGA6L3	ENST00000557886	human	ensembl	74_37	-1	putative	silent	c.1164	p.D388	0.000	NULL	NULL	-	no_errors	RP13-996F3.4	Clone_based_vega_gene	ENSG00000259243	tier1	-	-	8	0	0.00	19	10	34.48
GOLGA6L4	0	genome.wustl.edu	37	15	84909376	84909376	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	15	84909376	84909376	C	T	SNP	GOLGA6L4	ENST00000422563	human	ensembl	74_37	+1	known	missense	c.298	p.R100W	0.001	NULL	NULL	-	no_errors	GOLGA6L4	HGNC	ENSG00000184206	tier1	-	-	41	0	0.00	82	17	17.17
GPR85	0	genome.wustl.edu	37	7	112724407	112724407	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	112724407	112724407	C	T	SNP	GPR85	ENST00000297146	human	ensembl	74_37	-1	known	missense	c.370	p.A124T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR85	HGNC	ENSG00000164604	tier1	-	-	10	0	0.00	18	45	71.43
GRIA2	0	genome.wustl.edu	37	4	158255208	158255208	+	Missense_Mutation	SNP	A	A	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	4	158255208	158255208	A	T	SNP	GRIA2	ENST00000264426	human	ensembl	74_37	+1	known	missense	c.1202	p.E401V	0.999	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251	tier1	-	-	13	0	0.00	58	11	15.94
GRK7	0	genome.wustl.edu	37	3	141499486	141499486	+	Missense_Mutation	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	141499486	141499486	T	C	SNP	GRK7	ENST00000264952	human	ensembl	74_37	+1	known	missense	c.883	p.F295L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK7	HGNC	ENSG00000114124				13	0	0.00	31	2	6.06
GRM3	0	genome.wustl.edu	37	7	86468292	86468292	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	86468292	86468292	G	T	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	nonsense	c.1462	p.E488*	1.000	superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				20	0	0.00	60	4	6.25
GSN-AS1	0	genome.wustl.edu	37	9	124045974	124045974	+	RNA	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	9	124045974	124045974	T	C	SNP	GSN-AS1	ENST00000414544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GSN-AS1	HGNC	ENSG00000235865	tier1	rs78220606	-	9	0	0.00	10	4	28.57
GUSBP1	0	genome.wustl.edu	37	5	21459818	21459818	+	RNA	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	21459818	21459818	G	A	SNP	GUSBP1	ENST00000508260	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.649	-	-	-	no_errors	GUSBP1	HGNC	ENSG00000183666	tier1	-	-	93	0	0.00	255	84	24.63
HAND2-AS1	0	genome.wustl.edu	37	4	174458050	174458050	+	RNA	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	4	174458050	174458050	G	A	SNP	HAND2-AS1	ENST00000502334	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HAND2-AS1	HGNC	ENSG00000237125				18	0	0.00	44	7	13.73
HBS1L	0	genome.wustl.edu	37	6	135303637	135303637	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	135303637	135303637	C	T	SNP	HBS1L	ENST00000367837	human	ensembl	74_37	-1	known	missense	c.1556	p.R519Q	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel	pfam_HBS1-like_N,pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom	-	no_errors	HBS1L	HGNC	ENSG00000112339	tier1	-	-	15	0	0.00	33	10	23.26
HLA-DQA2	0	genome.wustl.edu	37	6	32713598	32713598	+	Missense_Mutation	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	32713598	32713598	T	C	SNP	HLA-DQA2	ENST00000374940	human	ensembl	74_37	+1	known	missense	c.362	p.F121S	0.252	pfscan_Ig-like_dom	pfam_MHC_II_a_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DQA2	HGNC	ENSG00000237541	tier1	rs138296677	-	36	0	0.00	82	13	13.68
HTR1D	0	genome.wustl.edu	37	1	23519770	23519770	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	23519770	23519770	G	T	SNP	HTR1D	ENST00000314113	human	ensembl	74_37	-1	known	missense	c.943	p.L315M	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT1D_rcpt,prints_5HT_rcpt	-	no_errors	HTR1D	HGNC	ENSG00000179546	tier1	-	-	19	0	0.00	32	16	33.33
HTRA2	0	genome.wustl.edu	37	2	74759031	74759031	+	Missense_Mutation	SNP	T	T	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	74759031	74759031	T	A	SNP	HTRA2	ENST00000258080	human	ensembl	74_37	+1	known	missense	c.1094	p.M365K	1.000	superfamily_PDZ,smart_PDZ	pfam_Peptidase_S1,pfam_PDZ,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA2	HGNC	ENSG00000115317				13	0	0.00	23	4	14.81
IL2RA	0	genome.wustl.edu	37	10	6063544	6063544	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	6063544	6063544	G	A	SNP	IL2RA	ENST00000379959	human	ensembl	74_37	-1	known	silent	c.480	p.H160	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	IL2RA	HGNC	ENSG00000134460	tier1	-	-	33	0	0.00	39	13	25.00
IL2RA	0	genome.wustl.edu	37	10	6066312	6066312	+	Missense_Mutation	SNP	G	G	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	6066312	6066312	G	C	SNP	IL2RA	ENST00000379959	human	ensembl	74_37	-1	known	missense	c.262	p.R88G	0.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	IL2RA	HGNC	ENSG00000134460	tier1	-	-	12	0	0.00	82	17	17.17
IL3	0	genome.wustl.edu	37	5	131396415	131396415	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	131396415	131396415	G	A	SNP	IL3	ENST00000296870	human	ensembl	74_37	+1	known	missense	c.16	p.V6I	0.000	pirsf_IL-3	pfam_IL-3,superfamily_4_helix_cytokine-like_core,pirsf_IL-3,prints_IL-3	-	no_errors	IL3	HGNC	ENSG00000164399	tier1	-	-	13	0	0.00	17	12	41.38
IL3	0	genome.wustl.edu	37	5	131398459	131398459	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	131398459	131398459	C	T	SNP	IL3	ENST00000296870	human	ensembl	74_37	+1	known	missense	c.434	p.T145M	0.000	pirsf_IL-3	pfam_IL-3,superfamily_4_helix_cytokine-like_core,pirsf_IL-3,prints_IL-3	-	no_errors	IL3	HGNC	ENSG00000164399	tier1	-	-	13	0	0.00	23	7	23.33
IMPDH1	0	genome.wustl.edu	37	7	128034542	128034542	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	128034542	128034542	C	T	SNP	IMPDH1	ENST00000338791	human	ensembl	74_37	-1	known	silent	c.1662	p.Q554	1.000	pfam_IMP_DH_GMPRt,tigrfam_IMP_DH	pfam_IMP_DH_GMPRt,pfam_CBS_dom,pfam_2Npropane_dOase,pfam_FMN-dep_DH,smart_CBS_dom,tigrfam_IMP_DH	-	no_errors	IMPDH1	HGNC	ENSG00000106348	tier1	rs139785999	-	41	0	0.00	57	17	22.97
IMPDH1	0	genome.wustl.edu	37	7	128036730	128036730	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	128036730	128036730	G	A	SNP	IMPDH1	ENST00000338791	human	ensembl	74_37	-1	known	silent	c.1185	p.A395	1.000	pfam_IMP_DH_GMPRt,pfam_2Npropane_dOase,pfam_FMN-dep_DH,tigrfam_IMP_DH	pfam_IMP_DH_GMPRt,pfam_CBS_dom,pfam_2Npropane_dOase,pfam_FMN-dep_DH,smart_CBS_dom,tigrfam_IMP_DH	-	no_errors	IMPDH1	HGNC	ENSG00000106348	tier1	-	-	22	0	0.00	51	8	13.33
IMPG2	0	genome.wustl.edu	37	3	100949844	100949844	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	100949844	100949844	G	T	SNP	IMPG2	ENST00000193391	human	ensembl	74_37	-1	known	missense	c.3379	p.L1127I	0.457	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG2	HGNC	ENSG00000081148				14	0	0.00	73	4	5.19
INADL	0	genome.wustl.edu	37	1	62240965	62240965	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	62240965	62240965	G	A	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	missense	c.808	p.V270M	0.999	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	tier1	-	-	27	0	0.00	55	45	45.00
INPP5E	0	genome.wustl.edu	37	9	139324152	139324152	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	9	139324152	139324152	G	A	SNP	INPP5E	ENST00000371712	human	ensembl	74_37	-1	known	missense	c.1910	p.S637F	0.971	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5E	HGNC	ENSG00000148384				15	0	0.00	43	4	8.51
INPP5E	0	genome.wustl.edu	37	9	139324165	139324165	+	Nonsense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	9	139324165	139324165	G	A	SNP	INPP5E	ENST00000371712	human	ensembl	74_37	-1	known	nonsense	c.1897	p.Q633*	0.041	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5E	HGNC	ENSG00000148384				13	0	0.00	38	4	9.52
IPO13	0	genome.wustl.edu	37	1	44422098	44422098	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	44422098	44422098	C	T	SNP	IPO13	ENST00000372343	human	ensembl	74_37	+1	known	missense	c.928	p.R310C	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO13	HGNC	ENSG00000117408	tier1	-	-	10	0	0.00	30	7	18.92
IPO9	0	genome.wustl.edu	37	1	201837855	201837855	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	201837855	201837855	G	T	SNP	IPO9	ENST00000361565	human	ensembl	74_37	+1	known	missense	c.1935	p.M645I	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO9	HGNC	ENSG00000198700				12	0	0.00	31	2	6.06
IQUB	0	genome.wustl.edu	37	7	123097500	123097500	+	Missense_Mutation	SNP	A	A	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	123097500	123097500	A	T	SNP	IQUB	ENST00000324698	human	ensembl	74_37	-1	known	missense	c.2128	p.W710R	1.000	NULL	pfam_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675				11	0	0.00	45	4	8.16
ISM1	0	genome.wustl.edu	37	20	13279982	13279982	+	Missense_Mutation	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	20	13279982	13279982	T	C	SNP	ISM1	ENST00000262487	human	ensembl	74_37	+1	known	missense	c.1271	p.I424T	1.000	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM1	HGNC	ENSG00000101230	tier1	-	-	8	0	0.00	29	13	30.95
ITGAV	0	genome.wustl.edu	37	2	187532501	187532501	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	187532501	187532501	G	T	SNP	ITGAV	ENST00000261023	human	ensembl	74_37	+1	known	nonsense	c.2431	p.E811*	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448				23	0	0.00	72	4	5.26
ITGAX	0	genome.wustl.edu	37	16	31392248	31392248	+	Missense_Mutation	SNP	C	C	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	31392248	31392248	C	G	SNP	ITGAX	ENST00000268296	human	ensembl	74_37	+1	known	missense	c.3307	p.H1103D	0.000	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAX	HGNC	ENSG00000140678	tier1	-	-	34	0	0.00	54	9	14.29
JARID2	0	genome.wustl.edu	37	6	15520334	15520334	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	15520334	15520334	G	A	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	missense	c.3593	p.G1198D	1.000	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				26	0	0.00	68	4	5.56
KCNF1	0	genome.wustl.edu	37	2	11052955	11052955	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	11052955	11052955	C	T	SNP	KCNF1	ENST00000295082	human	ensembl	74_37	+1	known	missense	c.403	p.R135C	1.000	superfamily_BTB/POZ_fold	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975	tier1	-	-	9	0	0.00	17	8	32.00
KDM2A	0	genome.wustl.edu	37	11	67024302	67024303	+	RNA	INS	-	-	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	67024302	67024303	-	T	INS	KDM2A	ENST00000524657	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011:0.012	-	-	-	no_errors	KDM2A	HGNC	ENSG00000173120	tier1			12	0	0.00	38	33	46.48
KDM4A	0	genome.wustl.edu	37	1	44132178	44132178	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	44132178	44132178	C	T	SNP	KDM4A	ENST00000372396	human	ensembl	74_37	+1	known	silent	c.729	p.T243	0.986	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135	tier1	-	-	21	0	0.00	46	12	20.69
KIAA1217	0	genome.wustl.edu	37	10	24762592	24762592	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	24762592	24762592	G	A	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	missense	c.1282	p.A428T	0.962	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				10	0	0.00	28	2	6.67
KRTAP1-4	0	genome.wustl.edu	37	17	39186143	39186143	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	39186143	39186143	C	T	SNP	KRTAP1-4	ENST00000377747	human	ensembl	74_37	-1	known	missense	c.188	p.C63Y	1.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP1-4	HGNC	ENSG00000204887	tier1	-	-	59	0	0.00	175	38	17.84
KRTAP10-5	0	genome.wustl.edu	37	21	45999672	45999672	+	Missense_Mutation	SNP	A	A	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	21	45999672	45999672	A	C	SNP	KRTAP10-5	ENST00000400372	human	ensembl	74_37	-1	known	missense	c.784	p.C262G	0.980	NULL	NULL	-	no_errors	KRTAP10-5	HGNC	ENSG00000241123	tier1	-	-	47	0	0.00	94	34	26.56
KRTAP2-4	0	genome.wustl.edu	37	17	39221973	39221973	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	39221973	39221973	C	T	SNP	KRTAP2-4	ENST00000394015	human	ensembl	74_37	-1	known	missense	c.125	p.R42H	1.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP2-4	HGNC	ENSG00000213417	tier1	-	-	14	0	0.00	45	11	19.64
LAMB2	0	genome.wustl.edu	37	3	49160628	49160628	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	49160628	49160628	C	T	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	silent	c.4161	p.Q1387	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				26	0	0.00	56	4	6.67
LAMC3	0	genome.wustl.edu	37	9	133945187	133945187	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	9	133945187	133945187	G	A	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	missense	c.3019	p.G1007S	0.011	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555	tier1	rs141105450	-	22	0	0.00	28	15	34.88
LASP1	0	genome.wustl.edu	37	17	37074987	37074987	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	37074987	37074987	G	A	SNP	LASP1	ENST00000318008	human	ensembl	74_37	+1	known	missense	c.742	p.G248S	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Nebulin_35r-motif,pfam_Znf_LIM,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Znf_LIM,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	LASP1	HGNC	ENSG00000002834				13	0	0.00	55	5	8.33
LDLR	0	genome.wustl.edu	37	19	11240346	11240346	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	11240346	11240346	G	A	SNP	LDLR	ENST00000557933	human	ensembl	74_37	+1	novel	missense	c.2609	p.R870Q	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LDLR	HGNC	ENSG00000130164				14	0	0.00	23	2	8.00
LINC00152	0	genome.wustl.edu	37	2	87820801	87820801	+	RNA	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	87820801	87820801	G	T	SNP	LINC00152	ENST00000331944	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00152	HGNC	ENSG00000222041				29	0	0.00	69	4	5.41
LINC00686	0	genome.wustl.edu	37	20	61331792	61331792	+	RNA	SNP	A	A	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	20	61331792	61331792	A	G	SNP	LINC00686	ENST00000435412	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LINC00686	HGNC	ENSG00000237687				11	0	0.00	28	4	12.50
LOC100287497	0	genome.wustl.edu	37	1	224196625	224196625	+	RNA	SNP	A	A	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	224196625	224196625	A	G	SNP	LOC100287497	ENST00000540997	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	RP11-504P24.4	Clone_based_vega_gene	ENSG00000185495	tier1	-	-	23	0	0.00	88	14	13.73
LOC100996870	0	genome.wustl.edu	37	9	66457330	66457330	+	RNA	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	9	66457330	66457330	G	T	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.200	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113	tier1	-	-	26	0	0.00	71	10	12.35
LOC101927343	0	genome.wustl.edu	37	8	104178509	104178509	+	RNA	SNP	T	T	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	8	104178509	104178509	T	A	SNP	LOC101927343	ENST00000499522	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-318M2.2	Clone_based_vega_gene	ENSG00000247081	tier1	-	-	12	0	0.00	52	22	29.73
LOC388282	0	genome.wustl.edu	37	16	57850388	57850388	+	Missense_Mutation	SNP	G	G	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	57850388	57850388	G	C	SNP	LOC388282	ENST00000335616	human	ensembl	74_37	+1	known	missense	c.307	p.G103R	0.018	NULL	NULL	-	no_errors	CTD-2600O9.1	Clone_based_vega_gene	ENSG00000187185	tier1	-	-	19	0	0.00	30	12	28.57
LPCAT2	0	genome.wustl.edu	37	16	55608567	55608567	+	Nonsense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	55608567	55608567	C	T	SNP	LPCAT2	ENST00000262134	human	ensembl	74_37	+1	known	nonsense	c.1240	p.R414*	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	LPCAT2	HGNC	ENSG00000087253	tier1	-	-	17	0	0.00	45	21	31.82
LPL	0	genome.wustl.edu	37	8	19809439	19809439	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	8	19809439	19809439	C	T	SNP	LPL	ENST00000311322	human	ensembl	74_37	+1	known	missense	c.409	p.R137W	0.185	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,prints_Lipase,tigrfam_Lipo_Lipase	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_Lipo_Lipase,prints_Lipase,pfscan_PLAT/LH2_dom,tigrfam_Lipo_Lipase	-	no_errors	LPL	HGNC	ENSG00000175445	tier1	-	-	17	0	0.00	28	23	45.10
LRP2	0	genome.wustl.edu	37	2	170034503	170034503	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	170034503	170034503	C	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	silent	c.10203	p.T3401	0.002	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	tier1	-	-	16	0	0.00	35	10	22.22
LRP2	0	genome.wustl.edu	37	2	170053496	170053496	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	170053496	170053496	G	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.8623	p.R2875C	0.011	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				15	0	0.00	50	3	5.66
LRP2	0	genome.wustl.edu	37	2	170096247	170096247	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	170096247	170096247	G	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.4084	p.H1362N	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				11	0	0.00	39	4	9.30
LRP4	0	genome.wustl.edu	37	11	46890564	46890564	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	46890564	46890564	G	A	SNP	LRP4	ENST00000378623	human	ensembl	74_37	-1	known	silent	c.4812	p.I1604	0.995	NULL	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	tier1	-	-	12	0	0.00	37	12	24.49
LRRC16A	0	genome.wustl.edu	37	6	25500404	25500404	+	Silent	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	25500404	25500404	T	C	SNP	LRRC16A	ENST00000329474	human	ensembl	74_37	+1	novel	silent	c.1336	p.L446	0.003	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	tier1	-	-	26	0	0.00	119	29	19.59
LRRC41	0	genome.wustl.edu	37	1	46726876	46726877	+	RNA	INS	-	-	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	46726876	46726877	-	T	INS	LRRC41	ENST00000496156	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	LRRC41	HGNC	ENSG00000132128	tier1			17	0	0.00	53	7	11.67
LRWD1	0	genome.wustl.edu	37	7	102109466	102109466	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	102109466	102109466	C	T	SNP	LRWD1	ENST00000292616	human	ensembl	74_37	+1	known	silent	c.1185	p.I395	0.143	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LRWD1	HGNC	ENSG00000161036	tier1	-	-	34	0	0.00	70	20	22.22
LTBP3	0	genome.wustl.edu	37	11	65307039	65307039	+	Missense_Mutation	SNP	A	A	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	65307039	65307039	A	T	SNP	LTBP3	ENST00000301873	human	ensembl	74_37	-1	known	missense	c.3608	p.L1203Q	0.578	superfamily_TB_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP3	HGNC	ENSG00000168056	tier1	-	-	12	0	0.00	53	9	14.52
MAGEA12	0	genome.wustl.edu	37	X	151900213	151900213	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	X	151900213	151900213	C	T	SNP	MAGEA12	ENST00000357916	human	ensembl	74_37	-1	known	silent	c.588	p.V196	0.042	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	tier1	-	-	29	0	0.00	30	71	70.30
MAGEE2	0	genome.wustl.edu	37	X	75003938	75003938	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	X	75003938	75003938	C	A	SNP	MAGEE2	ENST00000373359	human	ensembl	74_37	-1	known	missense	c.949	p.D317Y	1.000	pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	tier1	-	-	9	0	0.00	10	19	65.52
MAGEE2	0	genome.wustl.edu	37	X	75004272	75004272	+	Missense_Mutation	SNP	T	T	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	X	75004272	75004272	T	G	SNP	MAGEE2	ENST00000373359	human	ensembl	74_37	-1	known	missense	c.615	p.K205N	0.002	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	tier1	-	-	8	0	0.00	9	4	30.77
MAPK8IP3	0	genome.wustl.edu	37	16	1779535	1779535	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	1779535	1779535	G	A	SNP	MAPK8IP3	ENST00000250894	human	ensembl	74_37	+1	known	silent	c.558	p.Q186	0.991	pfam_JNK/Rab-associated_protein-1_N	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	tier1	-	-	24	0	0.00	67	18	21.18
MC3R	0	genome.wustl.edu	37	20	54824550	54824550	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	20	54824550	54824550	C	T	SNP	MC3R	ENST00000243911	human	ensembl	74_37	+1	known	silent	c.651	p.H217	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melancort_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_Mcort_3_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC3R	HGNC	ENSG00000124089	tier1	-	-	18	0	0.00	41	21	33.87
MEX3C	0	genome.wustl.edu	37	18	48703718	48703718	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	18	48703718	48703718	G	T	SNP	MEX3C	ENST00000406189	human	ensembl	74_37	-1	known	missense	c.983	p.T328N	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3C	HGNC	ENSG00000176624	tier1	-	-	28	0	0.00	45	4	8.16
MIEN1	0	genome.wustl.edu	37	17	37885787	37885787	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	37885787	37885787	G	T	SNP	MIEN1	ENST00000394231	human	ensembl	74_37	-1	known	nonsense	c.336	p.C112*	0.576	NULL	pfam_Selenoprotein_Rdx-typ,superfamily_Thioredoxin-like_fold,tigrfam_Selenoprotein_Rdx-typ	-	no_errors	MIEN1	HGNC	ENSG00000141741				22	0	0.00	76	5	6.17
MIR4279	0	genome.wustl.edu	37	5	31936224	31936224	+	RNA	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	31936224	31936224	G	T	SNP	MIR4279	ENST00000582091	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	MIR4279	HGNC	ENSG00000266243				12	0	0.00	76	4	5.00
MLIP	0	genome.wustl.edu	37	6	54001550	54001550	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	54001550	54001550	G	A	SNP	MLIP	ENST00000502396	human	ensembl	74_37	+1	putative	missense	c.683	p.C228Y	1.000	NULL	NULL	-	no_errors	MLIP	HGNC	ENSG00000146147	tier1	-	-	10	0	0.00	17	11	39.29
MLXIPL	0	genome.wustl.edu	37	7	73008695	73008695	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	73008695	73008695	G	T	SNP	MLXIPL	ENST00000313375	human	ensembl	74_37	-1	known	missense	c.2349	p.N783K	0.978	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLXIPL	HGNC	ENSG00000009950				16	0	0.00	31	3	8.82
MMP9	0	genome.wustl.edu	37	20	44641948	44641948	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	20	44641948	44641948	C	T	SNP	MMP9	ENST00000372330	human	ensembl	74_37	+1	known	missense	c.1385	p.T462M	0.077	NULL	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP9	HGNC	ENSG00000100985				21	0	0.00	87	8	8.42
MMS22L	0	genome.wustl.edu	37	6	97609916	97609916	+	Missense_Mutation	SNP	C	C	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	97609916	97609916	C	G	SNP	MMS22L	ENST00000275053	human	ensembl	74_37	-1	known	missense	c.3347	p.G1116A	0.117	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MMS22L	HGNC	ENSG00000146263				13	0	0.00	60	8	11.76
MT-CO2	0	genome.wustl.edu	37	MT	7887	7887	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	MT	7887	7887	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	+1	known	missense	c.302	p.G101D	NULL	pfam_Cyt_c_oxidase_su2_C,superfamily_Cupredoxin,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC	ENSG00000198712	tier1	-	-	120	0	0.00	667	65	8.87
MYLIP	0	genome.wustl.edu	37	6	16130975	16130975	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	16130975	16130975	C	T	SNP	MYLIP	ENST00000356840	human	ensembl	74_37	+1	known	missense	c.275	p.T92I	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_N,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,pfscan_Znf_RING,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	MYLIP	HGNC	ENSG00000007944	tier1	-	-	15	0	0.00	44	19	30.16
MYOM1	0	genome.wustl.edu	37	18	3188780	3188780	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	18	3188780	3188780	C	T	SNP	MYOM1	ENST00000356443	human	ensembl	74_37	-1	known	missense	c.737	p.R246Q	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM1	HGNC	ENSG00000101605	tier1	-	-	15	0	0.00	23	29	55.77
NAGPA	0	genome.wustl.edu	37	16	5078127	5078127	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	5078127	5078127	G	T	SNP	NAGPA	ENST00000312251	human	ensembl	74_37	-1	known	missense	c.980	p.P327H	0.984	NULL	pfam_DUF2233,pfscan_EG-like_dom	-	no_errors	NAGPA	HGNC	ENSG00000103174				23	0	0.00	54	4	6.90
NALCN	0	genome.wustl.edu	37	13	102029402	102029402	+	Silent	SNP	A	A	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	13	102029402	102029402	A	G	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	silent	c.381	p.F127	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				13	0	0.00	37	4	9.76
NANOS3	0	genome.wustl.edu	37	19	13988559	13988559	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	13988559	13988559	G	T	SNP	NANOS3	ENST00000339133	human	ensembl	74_37	+1	known	missense	c.497	p.R166L	0.132	NULL	pfam_Znf_nanos-typ	-	no_errors	NANOS3	HGNC	ENSG00000187556				15	0	0.00	32	2	5.71
NAP1L6	0	genome.wustl.edu	37	X	72347489	72347489	+	Missense_Mutation	SNP	T	T	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	X	72347489	72347489	T	A	SNP	NAP1L6	ENST00000373518	human	ensembl	74_37	-1	known	missense	c.233	p.K78M	0.982	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L6	HGNC	ENSG00000204118	tier1	-	-	8	0	0.00	23	9	28.12
NBPF1	0	genome.wustl.edu	37	1	16895640	16895640	+	Missense_Mutation	SNP	A	A	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	16895640	16895640	A	T	SNP	NBPF1	ENST00000430580	human	ensembl	74_37	-1	novel	missense	c.2542	p.S848T	0.000	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF1	HGNC	ENSG00000219481	tier1	-	-	136	0	0.00	541	54	9.05
NBPF12	0	genome.wustl.edu	37	1	146398324	146398324	+	Nonsense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	146398324	146398324	C	T	SNP	NBPF12	ENST00000446760	human	ensembl	74_37	+1	known	nonsense	c.310	p.R104*	0.001	NULL	pfam_NBPF_dom	-	no_errors	NBPF12	HGNC	ENSG00000186275	tier1	-	-	36	0	0.00	194	27	12.22
NFXL1	0	genome.wustl.edu	37	4	47915995	47915995	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	4	47915995	47915995	C	A	SNP	NFXL1	ENST00000381538	human	ensembl	74_37	-1	known	missense	c.226	p.A76S	0.005	NULL	pfam_Znf_NFX1,smart_Znf_NFX1,pfscan_Znf_RING	-	no_errors	NFXL1	HGNC	ENSG00000170448				10	0	0.00	47	4	7.84
NHSL2	0	genome.wustl.edu	37	X	71359668	71359668	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	X	71359668	71359668	C	T	SNP	NHSL2	ENST00000540800	human	ensembl	74_37	+1	known	missense	c.2270	p.P757L	0.996	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	tier1	-	-	12	0	0.00	13	15	53.57
NKIRAS2	0	genome.wustl.edu	37	17	40175837	40175837	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	40175837	40175837	A	G	SNP	NKIRAS2	ENST00000307641	human	ensembl	74_37	+1	known	missense	c.502	p.M168V	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	NKIRAS2	HGNC	ENSG00000168256				20	0	0.00	73	4	5.19
NLRC5	0	genome.wustl.edu	37	16	57101700	57101700	+	Nonsense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	57101700	57101700	C	T	SNP	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	nonsense	c.4459	p.Q1487*	0.057	NULL	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				15	0	0.00	45	4	8.16
NLRP2	0	genome.wustl.edu	37	19	55494276	55494276	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	55494276	55494276	G	A	SNP	NLRP2	ENST00000448584	human	ensembl	74_37	+1	known	missense	c.1210	p.V404M	0.099	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556	tier1	-	-	12	0	0.00	28	22	44.00
NOLC1	0	genome.wustl.edu	37	10	103919022	103919022	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	103919022	103919022	G	A	SNP	NOLC1	ENST00000405356	human	ensembl	74_37	+1	known	missense	c.680	p.S227N	0.997	NULL	pfam_SRP40_C,pfscan_LisH_dimerisation	-	no_errors	NOLC1	HGNC	ENSG00000166197	tier1	-	-	40	0	0.00	74	34	31.48
NPFFR2	0	genome.wustl.edu	37	4	72897917	72897917	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	4	72897917	72897917	G	A	SNP	NPFFR2	ENST00000308744	human	ensembl	74_37	+1	known	missense	c.299	p.R100K	0.078	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291	tier1	-	-	36	0	0.00	83	35	29.66
NRG3	0	genome.wustl.edu	37	10	84738876	84738876	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	84738876	84738876	G	T	SNP	NRG3	ENST00000404547	human	ensembl	74_37	+1	known	missense	c.1583	p.G528V	1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737	tier1	-	-	20	0	0.00	52	14	21.21
NRXN3	0	genome.wustl.edu	37	14	80327554	80327554	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	14	80327554	80327554	G	A	SNP	NRXN3	ENST00000557594	human	ensembl	74_37	+1	novel	silent	c.1161	p.S387	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Neurexin-like,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	tier1	-	-	24	0	0.00	40	33	44.59
NSUN6	0	genome.wustl.edu	37	10	18903421	18903421	+	Silent	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	18903421	18903421	G	T	SNP	NSUN6	ENST00000377304	human	ensembl	74_37	-1	known	silent	c.543	p.R181	0.159	pfam_PUA,superfamily_PUA-like_domain,pfscan_PUA	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_PUA,superfamily_PUA-like_domain,pfscan_PUA,prints_RCMT	-	no_errors	NSUN6	HGNC	ENSG00000241058	tier1	-	-	28	0	0.00	89	22	19.82
NUDCD2	0	genome.wustl.edu	37	5	162884088	162884089	+	Splice_Site	INS	-	-	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	162884088	162884089	-	A	INS	NUDCD2	ENST00000302764	human	ensembl	74_37	-1	known	splice_site_ins	c.239-3_239-2	e3-2	0.984:0.001	-	-	-	no_errors	NUDCD2	HGNC	ENSG00000170584	tier1			9	0	0.00	27	9	25.00
NWD1	0	genome.wustl.edu	37	19	16902329	16902329	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	16902329	16902329	A	G	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	missense	c.3109	p.K1037E	0.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				12	0	0.00	26	2	7.14
OBSCN	0	genome.wustl.edu	37	1	228547658	228547658	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	228547658	228547658	G	A	SNP	OBSCN	ENST00000366709	human	ensembl	74_37	+1	known	silent	c.10422	p.S3474	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_DH-domain,pfam_Fibronectin_type3,pfam_IQ_motif_EF-hand-BS,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				18	0	0.00	47	7	12.73
OMD	0	genome.wustl.edu	37	9	95177605	95177605	+	Silent	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	9	95177605	95177605	T	C	SNP	OMD	ENST00000375550	human	ensembl	74_37	-1	known	silent	c.1095	p.Q365	0.998	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OMD	HGNC	ENSG00000127083	tier1	-	-	22	0	0.00	65	17	20.73
OR4C5	0	genome.wustl.edu	37	11	48387258	48387258	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	48387258	48387258	C	T	SNP	OR4C5	ENST00000319813	human	ensembl	74_37	-1	known	missense	c.760	p.A254T	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C5	HGNC	ENSG00000176540	tier1	rs78030134	-	19	0	0.00	33	22	40.00
ORM1	0	genome.wustl.edu	37	9	117085825	117085825	+	Missense_Mutation	SNP	C	C	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	9	117085825	117085825	C	G	SNP	ORM1	ENST00000538816	human	ensembl	74_37	+1	known	missense	c.412	p.P138A	0.000	NULL	NULL	-	no_errors	ORM1	HGNC	ENSG00000229314	tier1	-	-	30	0	0.00	27	6	18.18
OXER1	0	genome.wustl.edu	37	2	42990955	42990955	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	42990955	42990955	C	T	SNP	OXER1	ENST00000378661	human	ensembl	74_37	-1	known	missense	c.365	p.R122Q	0.473	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	OXER1	HGNC	ENSG00000162881				12	0	0.00	34	6	15.00
PALLD	0	genome.wustl.edu	37	4	169604255	169604255	+	Splice_Site	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	4	169604255	169604255	G	A	SNP	PALLD	ENST00000261509	human	ensembl	74_37	+1	known	splice_site	c.1260+1	e4+1	1.000	-	-	-	no_errors	PALLD	HGNC	ENSG00000129116	tier1	-	-	11	0	0.00	31	6	16.22
PAQR4	0	genome.wustl.edu	37	16	3021712	3021712	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	3021712	3021712	G	A	SNP	PAQR4	ENST00000318782	human	ensembl	74_37	+1	known	silent	c.585	p.L195	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR4	HGNC	ENSG00000162073	tier1	-	-	46	0	0.00	114	8	6.56
PARD3B	0	genome.wustl.edu	37	2	206050586	206050586	+	Missense_Mutation	SNP	A	A	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	206050586	206050586	A	T	SNP	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	missense	c.2023	p.S675C	1.000	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117	tier1	-	-	11	0	0.00	54	18	25.00
PCDH15	0	genome.wustl.edu	37	10	55581894	55581894	+	Splice_Site	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	55581894	55581894	C	T	SNP	PCDH15	ENST00000373957	human	ensembl	74_37	-1	novel	splice_site	c.2155-1	e17-1	0.002	-	-	-	no_errors	PCDH15	HGNC	ENSG00000150275				21	0	0.00	65	4	5.80
PCDHA1	0	genome.wustl.edu	37	5	140166141	140166141	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	140166141	140166141	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	missense	c.266	p.R89Q	0.994	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	tier1	-	-	37	0	0.00	73	22	23.16
PCDHA9	0	genome.wustl.edu	37	5	140229433	140229433	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	140229433	140229433	C	T	SNP	PCDHA9	ENST00000532602	human	ensembl	74_37	+1	known	silent	c.1353	p.N451	0.993	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	tier1	-	-	50	0	0.00	116	29	20.00
PCDHGB3	0	genome.wustl.edu	37	5	140750854	140750854	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	140750854	140750854	C	T	SNP	PCDHGB3	ENST00000576222	human	ensembl	74_37	+1	known	missense	c.893	p.T298M	0.010	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209				13	0	0.00	23	4	14.81
PCDHGB7	0	genome.wustl.edu	37	5	140799290	140799290	+	Nonsense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	140799290	140799290	C	T	SNP	PCDHGB7	ENST00000398594	human	ensembl	74_37	+1	known	nonsense	c.1864	p.R622*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122	tier1	-	-	12	0	0.00	38	12	23.53
PCNT	0	genome.wustl.edu	37	21	47783684	47783684	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	21	47783684	47783684	C	T	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.2444	p.T815M	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				9	0	0.00	22	2	8.33
PDLIM1	0	genome.wustl.edu	37	10	97031484	97031484	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	97031484	97031484	C	T	SNP	PDLIM1	ENST00000329399	human	ensembl	74_37	-1	known	missense	c.154	p.A52T	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM1	HGNC	ENSG00000107438				16	0	0.00	70	4	5.41
PERP	0	genome.wustl.edu	37	6	138417551	138417551	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	138417551	138417551	G	A	SNP	PERP	ENST00000421351	human	ensembl	74_37	-1	known	missense	c.295	p.L99F	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	PERP	HGNC	ENSG00000112378				12	0	0.00	35	2	5.41
PGC	0	genome.wustl.edu	37	6	41712488	41712488	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	41712488	41712488	C	T	SNP	PGC	ENST00000373025	human	ensembl	74_37	-1	known	missense	c.118	p.G40R	0.000	pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	PGC	HGNC	ENSG00000096088	tier1	-	-	28	0	0.00	55	5	8.33
PGR	0	genome.wustl.edu	37	11	100999555	100999555	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	100999555	100999555	C	T	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	missense	c.247	p.V83M	0.956	pfam_Progest_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175				21	0	0.00	193	13	6.31
PHF13	0	genome.wustl.edu	37	1	6682342	6682342	+	RNA	SNP	A	A	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	6682342	6682342	A	G	SNP	PHF13	ENST00000495385	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PHF13	HGNC	ENSG00000116273	tier1	-	-	25	0	0.00	117	27	18.75
PKLR	0	genome.wustl.edu	37	1	155261729	155261729	+	Splice_Site	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	155261729	155261729	C	T	SNP	PKLR	ENST00000342741	human	ensembl	74_37	-1	known	splice_site	c.1437-1	e10-1	1.000	-	-	-	no_errors	PKLR	HGNC	ENSG00000143627				13	0	0.00	27	4	12.90
PLCD1	0	genome.wustl.edu	37	3	38058149	38058149	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	38058149	38058149	G	A	SNP	PLCD1	ENST00000463876	human	ensembl	74_37	-1	known	silent	c.324	p.F108	0.999	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD1	HGNC	ENSG00000187091	tier1	-	-	12	0	0.00	20	5	20.00
PMS1	0	genome.wustl.edu	37	2	190670539	190670540	+	Frame_Shift_Ins	INS	-	-	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	190670539	190670540	-	A	INS	PMS1	ENST00000409985	human	ensembl	74_37	+1	novel	frame_shift_ins	c.477_478	p.K163fs	0.005:0.001	NULL	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd	-	no_errors	PMS1	HGNC	ENSG00000064933	tier1			12	0	0.00	45	22	32.84
PNPLA8	0	genome.wustl.edu	37	7	108128261	108128261	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	108128261	108128261	G	A	SNP	PNPLA8	ENST00000257694	human	ensembl	74_37	-1	known	missense	c.1820	p.A607V	1.000	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_ARM-type_fold	-	no_errors	PNPLA8	HGNC	ENSG00000135241	tier1	-	-	12	0	0.00	49	12	19.67
PPARGC1A	0	genome.wustl.edu	37	4	23830118	23830118	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	4	23830118	23830118	G	T	SNP	PPARGC1A	ENST00000264867	human	ensembl	74_37	-1	known	missense	c.662	p.P221H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819				20	0	0.00	93	5	5.10
PPIA	0	genome.wustl.edu	37	7	44839010	44839010	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	44839010	44839010	C	T	SNP	PPIA	ENST00000468812	human	ensembl	74_37	+1	known	silent	c.120	p.S40	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIA	HGNC	ENSG00000196262				16	0	0.00	51	4	7.27
PPP1R14C	0	genome.wustl.edu	37	6	150569882	150569882	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	150569882	150569882	G	T	SNP	PPP1R14C	ENST00000361131	human	ensembl	74_37	+1	known	nonsense	c.424	p.E142*	1.000	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	-	no_errors	PPP1R14C	HGNC	ENSG00000198729				23	0	0.00	70	4	5.41
PRKD1	0	genome.wustl.edu	37	14	30066913	30066913	+	Silent	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	14	30066913	30066913	G	T	SNP	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	silent	c.2218	p.R740	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304				12	0	0.00	37	2	5.13
PRPF8	0	genome.wustl.edu	37	17	1563149	1563149	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	1563149	1563149	C	A	SNP	PRPF8	ENST00000304992	human	ensembl	74_37	-1	known	missense	c.4932	p.L1644F	1.000	NULL	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_PRO8NT,pfam_Prp8_U5-snRNA-bd,pfam_PROCT,pfam_RRM_spliceosomal_PrP8,pfam_JAB_MPN_dom,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB_MPN_dom	-	no_errors	PRPF8	HGNC	ENSG00000174231	tier1	-	-	9	0	0.00	38	14	26.92
PRSS22	0	genome.wustl.edu	37	16	2903947	2903947	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	2903947	2903947	G	T	SNP	PRSS22	ENST00000161006	human	ensembl	74_37	-1	known	nonsense	c.636	p.Y212*	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	PRSS22	HGNC	ENSG00000005001				39	0	0.00	74	4	5.13
PSMB6	0	genome.wustl.edu	37	17	4701691	4701691	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	4701691	4701691	G	T	SNP	PSMB6	ENST00000270586	human	ensembl	74_37	+1	known	missense	c.694	p.A232S	0.984	NULL	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB6	HGNC	ENSG00000142507				8	0	0.00	21	4	16.00
PTCH1	0	genome.wustl.edu	37	9	98220417	98220417	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	9	98220417	98220417	G	T	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	missense	c.3046	p.L1016I	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				9	0	0.00	17	2	10.53
PTPRG	0	genome.wustl.edu	37	3	62189529	62189529	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	62189529	62189529	G	A	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	missense	c.2060	p.G687E	0.001	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724				19	0	0.00	39	7	15.22
PTPRT	0	genome.wustl.edu	37	20	41101125	41101125	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	20	41101125	41101125	C	T	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.1231	p.G411S	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	tier1	-	-	18	0	0.00	37	17	31.48
PUS7L	0	genome.wustl.edu	37	12	44124365	44124365	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	12	44124365	44124365	G	T	SNP	PUS7L	ENST00000344862	human	ensembl	74_37	-1	known	nonsense	c.1920	p.C640*	1.000	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7L	HGNC	ENSG00000129317				23	0	0.00	66	4	5.71
RABL2A	0	genome.wustl.edu	37	2	114400757	114400757	+	RNA	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	114400757	114400757	T	C	SNP	RABL2A	ENST00000478880	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RABL2A	HGNC	ENSG00000144134	tier1	-	-	27	0	0.00	63	24	27.59
RAD51	0	genome.wustl.edu	37	15	40993374	40993374	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	15	40993374	40993374	G	T	SNP	RAD51	ENST00000382643	human	ensembl	74_37	+1	known	missense	c.200	p.S67I	1.000	superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,pirsf_DNA_recomb/repair_RecA-like,tigrfam_DNA_recomb/repair_Rad51	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,superfamily_P-loop_NTPase,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,pfscan_RecA_monomer-monomer_interface,tigrfam_DNA_recomb/repair_Rad51	-	no_errors	RAD51	HGNC	ENSG00000051180				8	0	0.00	35	2	5.41
RAD54L2	0	genome.wustl.edu	37	3	51664825	51664825	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	51664825	51664825	G	A	SNP	RAD54L2	ENST00000409535	human	ensembl	74_37	+1	known	missense	c.703	p.V235I	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080	tier1	-	-	12	0	0.00	37	10	21.28
RANBP2	0	genome.wustl.edu	37	2	109382709	109382709	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	109382709	109382709	C	T	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.5714	p.P1905L	0.042	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	tier1	-	-	49	0	0.00	328	61	15.64
RBM14-RBM4	0	genome.wustl.edu	37	11	66384105	66384105	+	RNA	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	66384105	66384105	C	T	SNP	RBM14-RBM4	ENST00000511114	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RBM14-RBM4	HGNC	ENSG00000248643				8	0	0.00	60	6	9.09
RBM27	0	genome.wustl.edu	37	5	145609304	145609304	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	145609304	145609304	C	T	SNP	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	silent	c.420	p.D140	1.000	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009	tier1	-	-	12	0	0.00	21	11	34.38
RCVRN	0	genome.wustl.edu	37	17	9808122	9808122	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	9808122	9808122	C	T	SNP	RCVRN	ENST00000226193	human	ensembl	74_37	-1	known	missense	c.376	p.V126I	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	RCVRN	HGNC	ENSG00000109047	tier1	-	-	9	0	0.00	27	9	25.00
REXO1	0	genome.wustl.edu	37	19	1816336	1816336	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	1816336	1816336	G	A	SNP	REXO1	ENST00000170168	human	ensembl	74_37	-1	known	silent	c.3465	p.H1155	0.998	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1	HGNC	ENSG00000079313				9	0	0.00	26	2	7.14
RORA	0	genome.wustl.edu	37	15	60803593	60803593	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	15	60803593	60803593	C	T	SNP	RORA	ENST00000261523	human	ensembl	74_37	-1	known	missense	c.751	p.V251I	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORA	HGNC	ENSG00000069667	tier1	rs140905032	-	10	0	0.00	40	11	21.57
RPS6KA4	0	genome.wustl.edu	37	11	64128017	64128017	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	64128017	64128017	C	T	SNP	RPS6KA4	ENST00000334205	human	ensembl	74_37	+1	known	missense	c.415	p.R139C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA4	HGNC	ENSG00000162302				10	0	0.00	31	4	11.43
RRBP1	0	genome.wustl.edu	37	20	17608209	17608212	+	Frame_Shift_Del	DEL	TCTC	TCTC	-			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	TCTC	TCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	20	17608209	17608212	TCTC	-	DEL	RRBP1	ENST00000246043	human	ensembl	74_37	-1	known	frame_shift_del	c.2868_2865	p.R956fs	0.963:0.997:1.000:1.000	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	tier1			10	0	0.00	32	9	21.95
RYR2	0	genome.wustl.edu	37	1	237666695	237666695	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	237666695	237666695	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.2497	p.E833K	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				10	0	0.00	36	6	14.29
SCGB1D2	0	genome.wustl.edu	37	11	62010902	62010902	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	62010902	62010902	C	T	SNP	SCGB1D2	ENST00000244926	human	ensembl	74_37	+1	known	missense	c.197	p.T66M	0.000	pfam_Secretoglobin,superfamily_Secretoglobin	pfam_Secretoglobin,superfamily_Secretoglobin	-	no_errors	SCGB1D2	HGNC	ENSG00000124935	tier1	-	-	9	0	0.00	37	24	39.34
SCN5A	0	genome.wustl.edu	37	3	38603922	38603922	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	38603922	38603922	C	T	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.3947	p.R1316Q	0.988	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				12	0	0.00	23	4	14.81
SDF4	0	genome.wustl.edu	37	1	1164049	1164049	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	1164049	1164049	G	A	SNP	SDF4	ENST00000360001	human	ensembl	74_37	-1	known	missense	c.125	p.S42L	0.998	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	SDF4	HGNC	ENSG00000078808	tier1	-	-	16	0	0.00	27	12	30.77
SEC22B	0	genome.wustl.edu	37	1	145116048	145116048	+	RNA	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	145116048	145116048	C	T	SNP	SEC22B	ENST00000453618	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.944	-	-	-	no_errors	SEC22B	HGNC	ENSG00000223380	tier1	rs12076894	-	13	0	0.00	63	12	16.00
SELP	0	genome.wustl.edu	37	1	169581488	169581488	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	169581488	169581488	C	T	SNP	SELP	ENST00000263686	human	ensembl	74_37	-1	known	missense	c.928	p.G310R	0.942	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	tier1	-	-	32	0	0.00	70	11	13.58
SERPINE3	0	genome.wustl.edu	37	13	51922369	51922369	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	13	51922369	51922369	G	T	SNP	SERPINE3	ENST00000521255	human	ensembl	74_37	+1	known	missense	c.721	p.G241C	0.008	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINE3	HGNC	ENSG00000253309				20	0	0.00	56	4	6.67
SERPINF1	0	genome.wustl.edu	37	17	1680027	1680027	+	Nonsense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	1680027	1680027	C	T	SNP	SERPINF1	ENST00000254722	human	ensembl	74_37	+1	known	nonsense	c.988	p.Q330*	0.969	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINF1	HGNC	ENSG00000132386				11	0	0.00	27	4	12.90
SH3KBP1	0	genome.wustl.edu	37	X	19713766	19713766	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	X	19713766	19713766	G	T	SNP	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	missense	c.484	p.L162I	0.504	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				9	0	0.00	40	4	9.09
SHC4	0	genome.wustl.edu	37	15	49127098	49127098	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	15	49127098	49127098	C	T	SNP	SHC4	ENST00000332408	human	ensembl	74_37	-1	known	silent	c.1605	p.A535	0.008	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC4	HGNC	ENSG00000185634	tier1	rs141070519	-	16	0	0.00	26	15	36.59
SIPA1L2	0	genome.wustl.edu	37	1	232561444	232561444	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	232561444	232561444	G	A	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	silent	c.4521	p.S1507	0.895	pfam_DUF3401	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	tier1	-	-	26	0	0.00	57	8	12.31
SIRPB1	0	genome.wustl.edu	37	20	1592048	1592048	+	Frame_Shift_Del	DEL	G	G	-			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	20	1592048	1592048	G	0	DEL	SIRPB1	ENST00000279477	human	ensembl	74_37	-1	known	frame_shift_del	c.388	p.H130fs	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPB1	HGNC	ENSG00000101307				17	0	0.00	73	7	8.75
SLC28A1	0	genome.wustl.edu	37	15	85486698	85486698	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	15	85486698	85486698	C	T	SNP	SLC28A1	ENST00000286749	human	ensembl	74_37	+1	known	missense	c.1604	p.T535M	0.958	pfam_Nucleos_tra2_C,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A1	HGNC	ENSG00000156222	tier1	-	-	27	0	0.00	29	9	23.68
SLC2A7	0	genome.wustl.edu	37	1	9070276	9070276	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	9070276	9070276	G	A	SNP	SLC2A7	ENST00000400906	human	ensembl	74_37	-1	known	missense	c.1042	p.R348W	0.003	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A7	HGNC	ENSG00000197241	tier1	-	-	23	0	0.00	60	38	37.62
SLC32A1	0	genome.wustl.edu	37	20	37357187	37357187	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	20	37357187	37357187	G	A	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	missense	c.1483	p.A495T	0.997	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				16	0	0.00	67	4	5.63
SLC38A2	0	genome.wustl.edu	37	12	46758906	46758906	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	12	46758906	46758906	C	T	SNP	SLC38A2	ENST00000256689	human	ensembl	74_37	-1	known	silent	c.630	p.S210	0.053	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A2	HGNC	ENSG00000134294				11	0	0.00	35	4	10.26
SLC6A14	0	genome.wustl.edu	37	X	115569091	115569091	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	X	115569091	115569091	G	T	SNP	SLC6A14	ENST00000371900	human	ensembl	74_37	+1	known	missense	c.182	p.R61I	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A14	HGNC	ENSG00000087916				17	0	0.00	61	4	6.15
SLC6A3	0	genome.wustl.edu	37	5	1409228	1409228	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	1409228	1409228	C	T	SNP	SLC6A3	ENST00000270349	human	ensembl	74_37	-1	known	missense	c.1411	p.V471I	0.999	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_dopamine	-	no_errors	SLC6A3	HGNC	ENSG00000142319				14	0	0.00	65	9	12.16
SLIT2	0	genome.wustl.edu	37	4	20618585	20618585	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	4	20618585	20618585	C	T	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	silent	c.3900	p.N1300	0.348	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				15	0	0.00	34	5	12.82
SMIM11	0	genome.wustl.edu	37	21	35774491	35774492	+	RNA	INS	-	-	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	21	35774491	35774492	-	T	INS	SMIM11	ENST00000481710	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002	-	-	-	no_errors	SMIM11	HGNC	ENSG00000205670	tier1			11	0	0.00	39	5	11.36
SNORD114-6	0	genome.wustl.edu	37	14	101423544	101423544	+	RNA	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	14	101423544	101423544	G	T	SNP	SNORD114-6	ENST00000364393	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	SNORD114-6	HGNC	ENSG00000201263	tier1	-	-	10	0	0.00	34	6	15.00
SPACA1	0	genome.wustl.edu	37	6	88757798	88757798	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	88757798	88757798	G	A	SNP	SPACA1	ENST00000237201	human	ensembl	74_37	+1	known	missense	c.175	p.A59T	0.000	NULL	NULL	-	no_errors	SPACA1	HGNC	ENSG00000118434	tier1	rs145474393	-	8	0	0.00	27	8	22.86
SPATS2	0	genome.wustl.edu	37	12	49884473	49884473	+	Missense_Mutation	SNP	A	A	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	12	49884473	49884473	A	T	SNP	SPATS2	ENST00000321898	human	ensembl	74_37	+1	known	missense	c.223	p.S75C	1.000	superfamily_UBA-like	pfam_DUF1387,superfamily_UBA-like	-	no_errors	SPATS2	HGNC	ENSG00000123352				23	0	0.00	44	4	8.33
SPEG	0	genome.wustl.edu	37	2	220343878	220343878	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	220343878	220343878	G	T	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.5040	p.E1680D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				21	0	0.00	35	5	12.50
SPOCD1	0	genome.wustl.edu	37	1	32256313	32256313	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	32256313	32256313	C	T	SNP	SPOCD1	ENST00000360482	human	ensembl	74_37	-1	known	missense	c.3542	p.R1181H	0.001	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,superfamily_TFIIS_cen_dom,smart_TFS2M	-	no_errors	SPOCD1	HGNC	ENSG00000134668	tier1	-	-	24	0	0.00	37	8	17.78
SRSF11	0	genome.wustl.edu	37	1	70694241	70694241	+	RNA	SNP	T	T	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	70694241	70694241	T	A	SNP	SRSF11	ENST00000463877	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SRSF11	HGNC	ENSG00000116754	tier1	-	-	8	0	0.00	45	9	16.67
ST8SIA6-AS1	0	genome.wustl.edu	37	10	17450200	17450200	+	RNA	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	17450200	17450200	C	T	SNP	ST8SIA6-AS1	ENST00000377597	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ST8SIA6-AS1	HGNC	ENSG00000204832	tier1	-	-	9	0	0.00	52	8	13.33
STAG3L4	0	genome.wustl.edu	37	7	66773930	66773930	+	RNA	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	66773930	66773930	G	A	SNP	STAG3L4	ENST00000416602	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	STAG3L4	HGNC	ENSG00000106610	tier1	-	-	16	0	0.00	42	10	19.23
STAU1	0	genome.wustl.edu	37	20	47734363	47734363	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	20	47734363	47734363	G	A	SNP	STAU1	ENST00000371856	human	ensembl	74_37	-1	known	missense	c.1460	p.T487M	0.998	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU1	HGNC	ENSG00000124214	tier1	-	-	24	0	0.00	90	13	12.62
STMN2	0	genome.wustl.edu	37	8	80567209	80567209	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	8	80567209	80567209	C	A	SNP	STMN2	ENST00000220876	human	ensembl	74_37	+1	known	missense	c.392	p.A131E	1.000	pfam_Stathmin_fam,superfamily_Stathmin_fam,pirsf_Stathmin_fam,prints_Stathmin_fam	pfam_Stathmin_fam,superfamily_Stathmin_fam,pirsf_Stathmin_fam,prints_Stathmin_fam	-	no_errors	STMN2	HGNC	ENSG00000104435				12	0	0.00	46	4	8.00
STXBP5	0	genome.wustl.edu	37	6	147525742	147525742	+	Missense_Mutation	SNP	A	A	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	147525742	147525742	A	T	SNP	STXBP5	ENST00000321680	human	ensembl	74_37	+1	known	missense	c.74	p.Q25L	1.000	NULL	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506	tier1	-	-	43	0	0.00	60	47	43.52
STYK1	0	genome.wustl.edu	37	12	10783828	10783828	+	Missense_Mutation	SNP	C	C	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	12	10783828	10783828	C	G	SNP	STYK1	ENST00000075503	human	ensembl	74_37	-1	known	missense	c.267	p.E89D	0.945	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STYK1	HGNC	ENSG00000060140				19	0	0.00	37	5	11.90
STYK1	0	genome.wustl.edu	37	12	10783829	10783829	+	Missense_Mutation	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	12	10783829	10783829	T	C	SNP	STYK1	ENST00000075503	human	ensembl	74_37	-1	known	missense	c.266	p.E89G	0.953	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STYK1	HGNC	ENSG00000060140				19	0	0.00	37	5	11.90
SUPT4H1	0	genome.wustl.edu	37	17	56423631	56423631	+	Silent	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	56423631	56423631	G	T	SNP	SUPT4H1	ENST00000225504	human	ensembl	74_37	-1	known	silent	c.330	p.S110	1.000	pirsf_Spt4	pfam_Spt4/RpoE2_Znf,pirsf_Spt4	-	no_errors	SUPT4H1	HGNC	ENSG00000213246				16	0	0.00	50	5	9.09
SYNE1	0	genome.wustl.edu	37	6	152765617	152765617	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	152765617	152765617	G	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.3766	p.Q1256K	0.993	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				14	0	0.00	64	4	5.88
SYT3	0	genome.wustl.edu	37	19	51135688	51135688	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	51135688	51135688	C	T	SNP	SYT3	ENST00000338916	human	ensembl	74_37	-1	known	missense	c.529	p.A177T	0.609	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	SYT3	HGNC	ENSG00000213023				23	0	0.00	53	3	5.36
TAAR5	0	genome.wustl.edu	37	6	132910410	132910410	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	132910410	132910410	G	A	SNP	TAAR5	ENST00000258034	human	ensembl	74_37	-1	known	missense	c.416	p.P139L	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_TAAR_fam	-	no_errors	TAAR5	HGNC	ENSG00000135569	tier1	-	-	13	0	0.00	24	6	20.00
TACC2	0	genome.wustl.edu	37	10	123843281	123843281	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	10	123843281	123843281	C	T	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	silent	c.1266	p.L422	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				13	0	0.00	29	2	6.45
TACR3	0	genome.wustl.edu	37	4	104640303	104640303	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	4	104640303	104640303	G	T	SNP	TACR3	ENST00000304883	human	ensembl	74_37	-1	known	missense	c.530	p.T177K	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836				8	0	0.00	18	3	14.29
TBC1D22B	0	genome.wustl.edu	37	6	37247304	37247304	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	37247304	37247304	G	A	SNP	TBC1D22B	ENST00000373491	human	ensembl	74_37	+1	known	missense	c.338	p.R113Q	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22B	HGNC	ENSG00000065491	tier1	-	-	11	0	0.00	19	6	24.00
TBC1D2B	0	genome.wustl.edu	37	15	78290609	78290609	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	15	78290609	78290609	G	A	SNP	TBC1D2B	ENST00000300584	human	ensembl	74_37	-1	known	missense	c.2785	p.R929W	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Prefoldin,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2B	HGNC	ENSG00000167202	tier1	-	-	19	0	0.00	50	9	15.25
TBX2	0	genome.wustl.edu	37	17	59479069	59479069	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	59479069	59479069	G	T	SNP	TBX2	ENST00000419047	human	ensembl	74_37	+1	known	missense	c.398	p.C133F	0.999	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,pfscan_TF_T-box	-	no_errors	TBX2	HGNC	ENSG00000121068				16	0	0.00	57	4	6.56
TBX2	0	genome.wustl.edu	37	17	59482957	59482957	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	59482957	59482957	G	A	SNP	TBX2	ENST00000240328	human	ensembl	74_37	+1	novel	silent	c.1446	p.P482	0.001	NULL	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX2	HGNC	ENSG00000121068				8	0	0.00	57	5	8.06
TCEB3B	0	genome.wustl.edu	37	18	44560118	44560118	+	Silent	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	18	44560118	44560118	G	T	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	silent	c.1518	p.R506	0.001	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181				17	0	0.00	39	4	9.30
TCHH	0	genome.wustl.edu	37	1	152082656	152082656	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	152082656	152082656	G	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.3037	p.R1013C	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450	tier1	-	-	25	0	0.00	64	30	31.58
TCP11	0	genome.wustl.edu	37	6	35108644	35108644	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	35108644	35108644	G	T	SNP	TCP11	ENST00000311875	human	ensembl	74_37	-1	known	missense	c.43	p.P15T	0.414	NULL	pfam_Tcp11	-	no_errors	TCP11	HGNC	ENSG00000124678				11	0	0.00	25	2	7.14
TEAD4	0	genome.wustl.edu	37	12	3120205	3120205	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	12	3120205	3120205	C	T	SNP	TEAD4	ENST00000359864	human	ensembl	74_37	+1	known	missense	c.262	p.R88W	0.881	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD4	HGNC	ENSG00000197905	tier1	-	-	13	0	0.00	27	9	25.00
TEKT1	0	genome.wustl.edu	37	17	6704115	6704115	+	Nonsense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	6704115	6704115	G	A	SNP	TEKT1	ENST00000338694	human	ensembl	74_37	-1	known	nonsense	c.1000	p.Q334*	0.992	pfam_Tektin,prints_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT1	HGNC	ENSG00000167858	tier1	-	-	31	0	0.00	29	24	45.28
TLN1	0	genome.wustl.edu	37	9	35711288	35711288	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	9	35711288	35711288	G	T	SNP	TLN1	ENST00000314888	human	ensembl	74_37	-1	known	missense	c.3983	p.A1328D	1.000	pfam_Vinculin-bd_dom,superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN1	HGNC	ENSG00000137076				13	0	0.00	23	3	11.54
TLN2	0	genome.wustl.edu	37	15	63004130	63004130	+	Missense_Mutation	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	15	63004130	63004130	C	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.2488	p.R830W	0.995	NULL	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914	tier1	-	-	12	0	0.00	32	11	25.58
TMCO3	0	genome.wustl.edu	37	13	114188437	114188437	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	13	114188437	114188437	G	T	SNP	TMCO3	ENST00000434316	human	ensembl	74_37	+1	known	missense	c.1421	p.C474F	1.000	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403				20	0	0.00	72	5	6.49
TMEM14B	0	genome.wustl.edu	37	6	10749996	10749996	+	RNA	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	6	10749996	10749996	T	C	SNP	TMEM14B	ENST00000492297	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TMEM14B	HGNC	ENSG00000137210	tier1	-	-	14	0	0.00	62	19	23.46
TMEM223	0	genome.wustl.edu	37	11	62558224	62558224	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	11	62558224	62558224	C	T	SNP	TMEM223	ENST00000307366	human	ensembl	74_37	-1	known	silent	c.480	p.R160	0.003	NULL	NULL	-	no_errors	TMEM223	HGNC	ENSG00000168569				9	0	0.00	42	6	12.50
TMEM253	0	genome.wustl.edu	37	14	21571353	21571353	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	14	21571353	21571353	G	A	SNP	TMEM253	ENST00000418511	human	ensembl	74_37	+1	known	missense	c.590	p.S197N	0.045	NULL	NULL	-	no_errors	TMEM253	HGNC	ENSG00000232070				10	0	0.00	34	4	10.53
TMEM39A	0	genome.wustl.edu	37	3	119155655	119155655	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	119155655	119155655	G	T	SNP	TMEM39A	ENST00000319172	human	ensembl	74_37	-1	known	missense	c.1095	p.S365R	1.000	pfam_Uncharacterised_TMEM39	pfam_Uncharacterised_TMEM39	-	no_errors	TMEM39A	HGNC	ENSG00000176142				15	0	0.00	54	4	6.90
TNRC6B	0	genome.wustl.edu	37	22	40661099	40661099	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	22	40661099	40661099	G	T	SNP	TNRC6B	ENST00000454349	human	ensembl	74_37	+1	known	missense	c.865	p.G289C	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354				11	0	0.00	33	4	10.81
TP53	0	genome.wustl.edu	37	17	7577022	7577022	+	Nonsense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	7577022	7577022	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.916	p.R306*	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs121913344	-	30	0	0.00	24	21	46.67
TRAIP	0	genome.wustl.edu	37	3	49869368	49869368	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	49869368	49869368	G	T	SNP	TRAIP	ENST00000331456	human	ensembl	74_37	-1	known	missense	c.1018	p.L340I	0.686	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TRAIP	HGNC	ENSG00000183763				17	0	0.00	46	5	9.80
TRAK2	0	genome.wustl.edu	37	2	202251000	202251000	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	202251000	202251000	G	A	SNP	TRAK2	ENST00000332624	human	ensembl	74_37	-1	known	missense	c.1904	p.S635F	0.203	NULL	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993				9	0	0.00	27	2	6.90
TRIML2	0	genome.wustl.edu	37	4	189013060	189013060	+	Missense_Mutation	SNP	A	A	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	4	189013060	189013060	A	G	SNP	TRIML2	ENST00000512729	human	ensembl	74_37	-1	known	missense	c.631	p.C211R	0.006	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	TRIML2	HGNC	ENSG00000179046	tier1	-	-	15	0	0.00	32	6	15.79
TRPM3	0	genome.wustl.edu	37	9	73399063	73399063	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	9	73399063	73399063	G	A	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	missense	c.1187	p.S396L	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067	tier1	-	-	24	0	0.00	35	10	22.22
TTN	0	genome.wustl.edu	37	2	179585679	179585679	+	Silent	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	179585679	179585679	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.19335	p.D6445	0.120	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				8	0	0.00	38	3	7.32
UBE2O	0	genome.wustl.edu	37	17	74395954	74395954	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	17	74395954	74395954	G	A	SNP	UBE2O	ENST00000319380	human	ensembl	74_37	-1	known	missense	c.1204	p.P402S	1.000	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2O	HGNC	ENSG00000175931	tier1	-	-	15	0	0.00	37	8	17.78
ULK1	0	genome.wustl.edu	37	12	132396489	132396489	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	12	132396489	132396489	C	T	SNP	ULK1	ENST00000321867	human	ensembl	74_37	+1	known	silent	c.951	p.S317	1.000	superfamily_Kinase-like_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169	tier1	-	-	19	0	0.00	25	8	24.24
UNC13A	0	genome.wustl.edu	37	19	17720882	17720882	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	17720882	17720882	G	T	SNP	UNC13A	ENST00000428389	human	ensembl	74_37	-1	known	missense	c.4942	p.Q1648K	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Munc13_subgr_dom-2,pfam_C2_dom,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	tier1	-	-	32	0	0.00	46	4	8.00
UNC13C	0	genome.wustl.edu	37	15	54305910	54305910	+	Silent	SNP	C	C	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	15	54305910	54305910	C	G	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	silent	c.810	p.L270	0.992	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	tier1	-	-	13	0	0.00	32	12	27.27
UNC5D	0	genome.wustl.edu	37	8	35608203	35608203	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	8	35608203	35608203	G	A	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	missense	c.2039	p.G680E	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687	tier1	-	-	32	0	0.00	50	17	25.37
USP17L10	0	genome.wustl.edu	37	4	9213897	9213897	+	Silent	SNP	C	C	G			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	4	9213897	9213897	C	G	SNP	USP17L10	ENST00000417945	human	ensembl	74_37	+1	novel	silent	c.1515	p.L505	0.004	NULL	pfam_Peptidase_C19/C67,pfam_HABP4_PAIRBP1-bd,pfscan_Peptidase_C19/C67	-	no_errors	USP17L10	HGNC	ENSG00000231396	tier1	-	-	20	0	0.00	96	41	29.93
UXS1	0	genome.wustl.edu	37	2	106774546	106774546	+	Missense_Mutation	SNP	A	A	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	2	106774546	106774546	A	C	SNP	UXS1	ENST00000283148	human	ensembl	74_37	-1	known	missense	c.259	p.F87V	1.000	NULL	pfam_Epimerase_deHydtase,pfam_UXS1_N,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_3Beta_OHSteriod_DH/Estase	-	no_errors	UXS1	HGNC	ENSG00000115652	tier1	-	-	12	0	0.00	87	23	20.91
WASH3P	0	genome.wustl.edu	37	15	102506230	102506230	+	RNA	SNP	A	A	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	15	102506230	102506230	A	C	SNP	WASH3P	ENST00000558686	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	WASH3P	HGNC	ENSG00000185596	tier1	-	-	38	0	0.00	77	17	17.89
WASH3P	0	genome.wustl.edu	37	15	102506248	102506248	+	RNA	SNP	G	G	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	15	102506248	102506248	G	C	SNP	WASH3P	ENST00000558686	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	WASH3P	HGNC	ENSG00000185596	tier1	-	-	44	0	0.00	100	16	13.79
WHAMMP2	0	genome.wustl.edu	37	15	28991270	28991270	+	RNA	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	15	28991270	28991270	G	A	SNP	WHAMMP2	ENST00000508764	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	WHAMMP2	HGNC	ENSG00000248334	tier1	-	-	30	0	0.00	119	10	7.75
WNT16	0	genome.wustl.edu	37	7	120971879	120971879	+	Frame_Shift_Del	DEL	G	G	-			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	120971879	120971879	G	-	DEL	WNT16	ENST00000222462	human	ensembl	74_37	+1	known	frame_shift_del	c.494	p.G167fs	1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC	ENSG00000002745	tier1			23	0	0.00	32	3	8.57
WNT2B	0	genome.wustl.edu	37	1	113062921	113062921	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	1	113062921	113062921	C	T	SNP	WNT2B	ENST00000369684	human	ensembl	74_37	+1	known	silent	c.966	p.G322	0.995	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245				9	0	0.00	32	4	11.11
WWC3	0	genome.wustl.edu	37	X	10046905	10046905	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	X	10046905	10046905	G	T	SNP	WWC3	ENST00000380861	human	ensembl	74_37	+1	known	missense	c.287	p.R96L	1.000	NULL	superfamily_C2_dom	-	no_errors	WWC3	HGNC	ENSG00000047644				17	0	0.00	62	4	6.06
ZBTB25	0	genome.wustl.edu	37	14	64957115	64957115	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	14	64957115	64957115	G	T	SNP	ZBTB25	ENST00000394715	human	ensembl	74_37	-1	known	missense	c.137	p.S46Y	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB25	HGNC	ENSG00000089775				11	0	0.00	33	2	5.71
ZBTB49	0	genome.wustl.edu	37	4	4303750	4303750	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	4	4303750	4303750	G	A	SNP	ZBTB49	ENST00000337872	human	ensembl	74_37	+1	known	missense	c.187	p.D63N	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB49	HGNC	ENSG00000168826	tier1	-	-	12	0	0.00	46	17	26.98
ZCRB1	0	genome.wustl.edu	37	12	42711657	42711657	+	Missense_Mutation	SNP	C	C	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	12	42711657	42711657	C	A	SNP	ZCRB1	ENST00000266529	human	ensembl	74_37	-1	known	missense	c.157	p.V53F	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_RRM_dom_euk,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	ZCRB1	HGNC	ENSG00000139168	tier1	-	-	11	0	0.00	33	8	19.51
ZDHHC11B	0	genome.wustl.edu	37	5	712139	712139	+	RNA	SNP	T	T	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	5	712139	712139	T	A	SNP	ZDHHC11B	ENST00000522356	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZDHHC11B	HGNC	ENSG00000206077	tier1	rs111351502	-	14	0	0.00	21	7	25.00
ZDHHC19	0	genome.wustl.edu	37	3	195936290	195936290	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	3	195936290	195936290	G	A	SNP	ZDHHC19	ENST00000296326	human	ensembl	74_37	-1	known	missense	c.365	p.P122L	0.997	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC19	HGNC	ENSG00000163958	tier1	rs200834357	-	44	0	0.00	77	23	22.77
ZFP30	0	genome.wustl.edu	37	19	38127108	38127108	+	Missense_Mutation	SNP	A	A	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	38127108	38127108	A	C	SNP	ZFP30	ENST00000351218	human	ensembl	74_37	-1	known	missense	c.334	p.C112G	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP30	HGNC	ENSG00000120784	tier1	-	-	13	0	0.00	72	14	16.28
ZNF107	0	genome.wustl.edu	37	7	64167088	64167088	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	64167088	64167088	G	A	SNP	ZNF107	ENST00000344930	human	ensembl	74_37	+1	known	missense	c.406	p.E136K	0.017	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF107	HGNC	ENSG00000196247				11	0	0.00	57	5	8.06
ZNF229	0	genome.wustl.edu	37	19	44932920	44932920	+	Missense_Mutation	SNP	G	G	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	44932920	44932920	G	C	SNP	ZNF229	ENST00000588931	human	ensembl	74_37	-1	known	missense	c.2036	p.T679R	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383				11	0	0.00	48	3	5.88
ZNF263	0	genome.wustl.edu	37	16	3336109	3336109	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	16	3336109	3336109	G	T	SNP	ZNF263	ENST00000219069	human	ensembl	74_37	+1	known	missense	c.729	p.R243S	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF263	HGNC	ENSG00000006194				14	0	0.00	55	4	6.78
ZNF446	0	genome.wustl.edu	37	19	58991386	58991386	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	58991386	58991386	G	A	SNP	ZNF446	ENST00000594369	human	ensembl	74_37	+1	known	missense	c.802	p.G268R	0.530	NULL	pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF446	HGNC	ENSG00000083838	tier1	-	-	35	0	0.00	65	14	17.72
ZNF675	0	genome.wustl.edu	37	19	23836454	23836454	+	Silent	SNP	T	T	C			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	19	23836454	23836454	T	C	SNP	ZNF675	ENST00000359788	human	ensembl	74_37	-1	known	silent	c.1281	p.E427	0.028	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF675	HGNC	ENSG00000197372	tier1	-	-	11	0	0.00	61	14	18.67
ZNF711	0	genome.wustl.edu	37	X	84502618	84502618	+	Missense_Mutation	SNP	G	G	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	X	84502618	84502618	G	T	SNP	ZNF711	ENST00000276123	human	ensembl	74_37	+1	known	missense	c.40	p.D14Y	1.000	NULL	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180				16	0	0.00	71	4	5.33
ZNF853	0	genome.wustl.edu	37	7	6662290	6662290	+	Silent	SNP	C	C	T			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	7	6662290	6662290	C	T	SNP	ZNF853	ENST00000457543	human	ensembl	74_37	+1	known	silent	c.1668	p.L556	0.215	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF853	HGNC	ENSG00000236609	tier1	-	-	10	0	0.00	39	7	15.22
ZXDA	0	genome.wustl.edu	37	X	57935854	57935854	+	Missense_Mutation	SNP	G	G	A			TCGA-JY-A93E-01A-11D-A37C-09	TCGA-JY-A93E-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b01013cd-8e6d-48c4-8e7d-04f225494136	4d76ceba-e50b-4887-9978-89db3736dbf5	X	57935854	57935854	G	A	SNP	ZXDA	ENST00000358697	human	ensembl	74_37	-1	known	missense	c.1001	p.A334V	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDA	HGNC	ENSG00000198205	tier1	-	-	12	0	0.00	22	28	56.00
