Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ALPK3	0	genome.wustl.edu	37	15	85406098	85406098	+	Silent	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	15	85406098	85406098	C	T	SNP	ALPK3	ENST00000258888	human	ensembl	74_37	+1	known	silent	c.4968	p.P1656	1.000	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK3	HGNC	ENSG00000136383	tier1	-	-	63	0	0.00	32	13	28.89
APOBR	0	genome.wustl.edu	37	16	28507417	28507417	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	16	28507417	28507417	A	G	SNP	APOBR	ENST00000564831	human	ensembl	74_37	+1	known	missense	c.1055	p.E352G	0.010	NULL	NULL	-	no_errors	APOBR	HGNC	ENSG00000184730	tier1	rs365499	-	30	0	0.00	28	4	12.50
ARPC1B	0	genome.wustl.edu	37	7	98992032	98992032	+	RNA	SNP	A	A	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	7	98992032	98992032	A	C	SNP	ARPC1B	ENST00000463078	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARPC1B	HGNC	ENSG00000130429	tier1	-	-	69	0	0.00	53	16	22.86
ASAP2	0	genome.wustl.edu	37	2	9437513	9437513	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	9437513	9437513	G	T	SNP	ASAP2	ENST00000281419	human	ensembl	74_37	+1	known	missense	c.284	p.G95V	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693	tier1	-	-	58	0	0.00	50	4	7.41
ASTE1	0	genome.wustl.edu	37	3	130735055	130735055	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	3	130735055	130735055	A	G	SNP	ASTE1	ENST00000264992	human	ensembl	74_37	-1	known	missense	c.1642	p.C548R	1.000	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533	tier1	-	-	51	0	0.00	43	8	15.69
ATP2A2	0	genome.wustl.edu	37	12	110777494	110777494	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	12	110777494	110777494	C	T	SNP	ATP2A2	ENST00000539276	human	ensembl	74_37	+1	known	missense	c.1729	p.L577F	1.000	superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Ca-transp_IIA	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A2	HGNC	ENSG00000174437	tier1	-	-	71	0	0.00	60	8	11.76
CACNA1E	0	genome.wustl.edu	37	1	181453096	181453096	+	Silent	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	181453096	181453096	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	silent	c.216	p.F72	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	tier1	-	-	81	0	0.00	65	17	20.73
CADPS2	0	genome.wustl.edu	37	7	122194686	122194686	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	7	122194686	122194686	C	T	SNP	CADPS2	ENST00000449022	human	ensembl	74_37	-1	known	missense	c.1393	p.V465I	0.997	superfamily_C2_dom	pfam_Ca-dep_secretion_activator,pfam_Pleckstrin_homology,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS2	HGNC	ENSG00000081803	tier1	-	-	74	0	0.00	76	13	14.61
CAMK1G	0	genome.wustl.edu	37	1	209768386	209768386	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	209768386	209768386	C	T	SNP	CAMK1G	ENST00000009105	human	ensembl	74_37	+1	known	missense	c.58	p.R20W	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK1G	HGNC	ENSG00000008118	tier1	-	-	60	0	0.00	71	19	21.11
CBFA2T3	0	genome.wustl.edu	37	16	88947727	88947727	+	Silent	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	16	88947727	88947727	G	A	SNP	CBFA2T3	ENST00000268679	human	ensembl	74_37	-1	known	silent	c.1374	p.S458	0.997	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG16	-	no_errors	CBFA2T3	HGNC	ENSG00000129993	tier1	-	-	48	0	0.00	20	7	25.93
CDH5	0	genome.wustl.edu	37	16	66423357	66423357	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	16	66423357	66423357	A	G	SNP	CDH5	ENST00000341529	human	ensembl	74_37	+1	known	missense	c.713	p.D238G	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH5	HGNC	ENSG00000179776	tier1	-	-	51	0	0.00	50	7	12.28
CDKN2A	0	genome.wustl.edu	37	9	21974695	21974695	+	Nonsense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	9	21974695	21974695	G	T	SNP	CDKN2A	ENST00000446177	human	ensembl	74_37	-1	known	nonsense	c.132	p.Y44*	0.020	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CDKN2A	HGNC	ENSG00000147889	tier1	-	-	30	0	0.00	8	4	33.33
CDKN2D	0	genome.wustl.edu	37	19	10677846	10677846	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	19	10677846	10677846	G	T	SNP	CDKN2D	ENST00000335766	human	ensembl	74_37	-1	known	missense	c.389	p.S130Y	0.827	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CDKN2D	HGNC	ENSG00000129355	tier1	-	-	45	0	0.00	28	8	22.22
CHEK2	0	genome.wustl.edu	37	22	29091840	29091840	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	22	29091840	29091840	T	C	SNP	CHEK2	ENST00000382580	human	ensembl	74_37	-1	known	missense	c.1246	p.K416E	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765				55	0	0.00	62	4	6.06
CHSY1	0	genome.wustl.edu	37	15	101718692	101718692	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	15	101718692	101718692	C	T	SNP	CHSY1	ENST00000254190	human	ensembl	74_37	-1	known	missense	c.1310	p.R437H	0.997	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY1	HGNC	ENSG00000131873	tier1	-	-	55	0	0.00	61	5	7.58
CLEC18A	0	genome.wustl.edu	37	16	69988452	69988452	+	Silent	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	16	69988452	69988452	C	T	SNP	CLEC18A	ENST00000449317	human	ensembl	74_37	+1	known	silent	c.432	p.N144	0.211	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EG-like_dom,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18A	HGNC	ENSG00000157322				64	0	0.00	49	5	9.26
CNTLN	0	genome.wustl.edu	37	9	17330768	17330768	+	Nonsense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	9	17330768	17330768	C	T	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	nonsense	c.1480	p.R494*	0.043	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	tier1	-	-	39	0	0.00	29	9	23.68
CRB2	0	genome.wustl.edu	37	9	126118544	126118544	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	9	126118544	126118544	C	T	SNP	CRB2	ENST00000373631	human	ensembl	74_37	+1	known	missense	c.5	p.A2V	1.000	NULL	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204	tier1	rs201425854	-	61	0	0.00	55	33	37.50
DCDC1	0	genome.wustl.edu	37	11	31149099	31149099	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	11	31149099	31149099	G	T	SNP	DCDC1	ENST00000597505	human	ensembl	74_37	-1	putative	missense	c.1402	p.Q468K	1.000	NULL	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Doublecortin_dom,pfscan_Doublecortin_dom,pfscan_Ricin_B_lectin	-	no_errors	DCDC1	HGNC	ENSG00000170959	tier1	-	-	145	0	0.00	104	17	14.05
DCHS2	0	genome.wustl.edu	37	4	155241544	155241544	+	Silent	SNP	T	T	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	4	155241544	155241544	T	C	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	silent	c.3642	p.L1214	0.772	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	tier1	-	-	82	0	0.00	70	16	18.60
DDX27	0	genome.wustl.edu	37	20	47860465	47860465	+	RNA	DEL	A	A	-			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	20	47860465	47860465	A	-	DEL	DDX27	ENST00000471144	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	DDX27	HGNC	ENSG00000124228	tier1			22	0	0.00	27	2	6.90
DDX60L	0	genome.wustl.edu	37	4	169351738	169351738	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	4	169351738	169351738	T	A	SNP	DDX60L	ENST00000260184	human	ensembl	74_37	-1	known	missense	c.1568	p.Y523F	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381	tier1	-	-	41	0	0.00	40	5	11.11
DGCR9	0	genome.wustl.edu	37	22	19005960	19005960	+	RNA	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	22	19005960	19005960	C	T	SNP	DGCR9	ENST00000609630	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DGCR9	HGNC	ENSG00000273032	tier1	-	-	95	0	0.00	89	32	26.45
DHH	0	genome.wustl.edu	37	12	49485080	49485080	+	Silent	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	12	49485080	49485080	G	A	SNP	DHH	ENST00000266991	human	ensembl	74_37	-1	known	silent	c.396	p.D132	0.995	pfam_Hedgehog_signaling_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,pirsf_Hedgehog,prints_Hedgehog	pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,pirsf_Hedgehog,prints_Hedgehog	-	no_errors	DHH	HGNC	ENSG00000139549	tier1	-	-	91	0	0.00	46	4	8.00
DLX4	0	genome.wustl.edu	37	17	48050513	48050513	+	Silent	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	17	48050513	48050513	G	A	SNP	DLX4	ENST00000240306	human	ensembl	74_37	+1	known	silent	c.360	p.P120	0.001	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	DLX4	HGNC	ENSG00000108813	tier1	-	-	60	0	0.00	49	15	23.44
DNER	0	genome.wustl.edu	37	2	230450599	230450599	+	Silent	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	230450599	230450599	G	A	SNP	DNER	ENST00000341772	human	ensembl	74_37	-1	known	silent	c.822	p.L274	0.000	NULL	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DNER	HGNC	ENSG00000187957	tier1	-	-	43	0	0.00	38	13	25.49
DPF3	0	genome.wustl.edu	37	14	73141063	73141063	+	Silent	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	14	73141063	73141063	C	T	SNP	DPF3	ENST00000366353	human	ensembl	74_37	-1	known	silent	c.921	p.P307	0.906	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DPF3	HGNC	ENSG00000205683	tier1	-	-	63	0	0.00	67	14	17.28
EEF1E1	0	genome.wustl.edu	37	6	8090462	8090462	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	6	8090462	8090462	G	T	SNP	EEF1E1	ENST00000379715	human	ensembl	74_37	-1	known	missense	c.341	p.T114K	1.000	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	EEF1E1	HGNC	ENSG00000124802	tier1	-	-	61	0	0.00	68	4	5.56
EHF	0	genome.wustl.edu	37	11	34680266	34680266	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	11	34680266	34680266	G	A	SNP	EHF	ENST00000257831	human	ensembl	74_37	+1	known	missense	c.794	p.R265Q	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	EHF	HGNC	ENSG00000135373				45	0	0.00	31	3	8.82
ELK3	0	genome.wustl.edu	37	12	96661219	96661219	+	RNA	SNP	A	A	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	12	96661219	96661219	A	G	SNP	ELK3	ENST00000549529	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	ELK3	HGNC	ENSG00000111145	tier1	-	-	44	0	0.00	19	10	34.48
ELP5	0	genome.wustl.edu	37	17	7161975	7161975	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	17	7161975	7161975	G	T	SNP	ELP5	ENST00000354429	human	ensembl	74_37	+1	known	missense	c.708	p.Q236H	0.539	pfam_Elp5	pfam_Elp5	-	no_errors	ELP5	HGNC	ENSG00000170291	tier1	-	-	33	0	0.00	38	7	15.56
ENSG00000205611	0	genome.wustl.edu	37	20	29516389	29516389	+	RNA	SNP	A	A	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	20	29516389	29516389	A	G	SNP	ENSG00000205611	ENST00000380888	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP4-610C12.4	Clone_based_vega_gene	ENSG00000205611	tier1	-	-	41	0	0.00	27	12	30.77
ENSG00000234719	0	genome.wustl.edu	37	16	12027708	12027708	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	16	12027708	12027708	C	G	SNP	ENSG00000234719	ENST00000399147	human	ensembl	74_37	-1	putative	missense	c.266	p.R89T	0.325	NULL	NULL	-	no_errors	RP11-166B2.1	Clone_based_vega_gene	ENSG00000234719	tier1	-	-	327	0	0.00	237	61	20.47
ENSG00000253701	0	genome.wustl.edu	37	14	106170814	106170814	+	RNA	SNP	G	G	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	14	106170814	106170814	G	C	SNP	ENSG00000253701	ENST00000497872	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AL928768.3	Clone_based_vega_gene	ENSG00000253701	tier1	-	-	121	0	0.00	79	16	16.84
ENSG00000257607	0	genome.wustl.edu	37	7	1098297	1098297	+	RNA	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	7	1098297	1098297	C	T	SNP	ENSG00000257607	ENST00000549241	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	RP11-449P15.1	Clone_based_vega_gene	ENSG00000257607	tier1	-	-	19	0	0.00	9	4	30.77
ENSG00000262136	0	genome.wustl.edu	37	16	69776090	69776090	+	RNA	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	16	69776090	69776090	G	T	SNP	ENSG00000262136	ENST00000575838	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2033A16.3	Clone_based_vega_gene	ENSG00000262136	tier1	-	-	25	0	0.00	34	12	26.09
ENTPD2	0	genome.wustl.edu	37	9	139946015	139946016	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	9	139946015	139946016	TC	-	DEL	ENTPD2	ENST00000355097	human	ensembl	74_37	-1	known	frame_shift_del	c.333_332	p.R111fs	0.990:0.993	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD2	HGNC	ENSG00000054179	tier1			29	0	0.00	16	9	36.00
ENTPD4	0	genome.wustl.edu	37	8	23306283	23306283	+	Silent	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	8	23306283	23306283	G	T	SNP	ENTPD4	ENST00000358689	human	ensembl	74_37	-1	known	silent	c.178	p.R60	0.045	NULL	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD4	HGNC	ENSG00000197217				47	0	0.00	32	2	5.88
EPYC	0	genome.wustl.edu	37	12	91396276	91396276	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	12	91396276	91396276	G	T	SNP	EPYC	ENST00000261172	human	ensembl	74_37	-1	known	missense	c.67	p.L23I	0.001	NULL	pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	EPYC	HGNC	ENSG00000083782	tier1	-	-	84	0	0.00	72	4	5.26
ERBB4	0	genome.wustl.edu	37	2	212530156	212530156	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	212530156	212530156	T	C	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.1763	p.N588S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	tier1	-	-	146	0	0.00	140	34	19.54
ERCC6L2	0	genome.wustl.edu	37	9	98638319	98638319	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	9	98638319	98638319	G	T	SNP	ERCC6L2	ENST00000288985	human	ensembl	74_37	+1	novel	missense	c.32	p.R11L	0.026	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L2	HGNC	ENSG00000182150	tier1	-	-	35	0	0.00	34	17	33.33
ERVMER61-1	0	genome.wustl.edu	37	1	187610544	187610544	+	RNA	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	187610544	187610544	C	T	SNP	ERVMER61-1	ENST00000429725	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	ERVMER61-1	HGNC	ENSG00000230426	tier1	-	-	40	0	0.00	45	4	8.16
ESRRB	0	genome.wustl.edu	37	14	76948947	76948947	+	Missense_Mutation	SNP	A	A	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	14	76948947	76948947	A	C	SNP	ESRRB	ENST00000380887	human	ensembl	74_37	+1	known	missense	c.632	p.K211T	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESRRB	HGNC	ENSG00000119715				65	0	0.00	43	3	6.52
FAM157C	0	genome.wustl.edu	37	16	90229167	90229167	+	RNA	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	16	90229167	90229167	C	T	SNP	FAM157C	ENST00000570230	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM157C	HGNC	ENSG00000260528				38	0	0.00	23	3	11.54
FAM170A	0	genome.wustl.edu	37	5	118970289	118970289	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	5	118970289	118970289	G	C	SNP	FAM170A	ENST00000515256	human	ensembl	74_37	+1	known	missense	c.846	p.E282D	0.000	NULL	NULL	-	no_errors	FAM170A	HGNC	ENSG00000164334				25	0	0.00	16	4	20.00
FAM193A	0	genome.wustl.edu	37	4	2674072	2674072	+	Nonsense_Mutation	SNP	T	T	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	4	2674072	2674072	T	G	SNP	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	nonsense	c.1431	p.Y477*	0.065	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386	tier1	-	-	42	0	0.00	24	16	40.00
FAM230B	0	genome.wustl.edu	37	22	21539182	21539182	+	RNA	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	22	21539182	21539182	G	A	SNP	FAM230B	ENST00000451257	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.591	-	-	-	no_errors	FAM230B	HGNC	ENSG00000215498	tier1	-	-	38	0	0.00	35	4	10.26
FMNL3	0	genome.wustl.edu	37	12	50050234	50050234	+	Silent	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	12	50050234	50050234	G	T	SNP	FMNL3	ENST00000293590	human	ensembl	74_37	-1	known	silent	c.838	p.R280	1.000	superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL3	HGNC	ENSG00000161791	tier1	-	-	85	0	0.00	67	5	6.94
FOLR3	0	genome.wustl.edu	37	11	71847017	71847017	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	11	71847017	71847017	A	G	SNP	FOLR3	ENST00000456237	human	ensembl	74_37	+1	known	missense	c.19	p.M7V	0.000	NULL	pfam_Folate_rcpt-like	-	no_errors	FOLR3	HGNC	ENSG00000110203	tier1	-	-	69	0	0.00	71	5	6.58
FOXA2	0	genome.wustl.edu	37	20	22563091	22563091	+	Silent	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	20	22563091	22563091	G	A	SNP	FOXA2	ENST00000419308	human	ensembl	74_37	-1	known	silent	c.789	p.C263	1.000	NULL	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA2	HGNC	ENSG00000125798				37	0	0.00	28	6	17.65
FSTL4	0	genome.wustl.edu	37	5	132553042	132553042	+	Frame_Shift_Del	DEL	T	T	-			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	5	132553042	132553042	T	0	DEL	FSTL4	ENST00000265342	human	ensembl	74_37	-1	known	frame_shift_del	c.1487	p.N496fs	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal_dom,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL4	HGNC	ENSG00000053108				34	0	0.00	49	9	15.52
GABRA4	0	genome.wustl.edu	37	4	46995416	46995416	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	4	46995416	46995416	G	A	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	missense	c.26	p.A9V	1.000	NULL	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158	tier1	-	-	61	0	0.00	65	23	25.84
GATA2	0	genome.wustl.edu	37	3	128205135	128205135	+	Frame_Shift_Del	DEL	T	T	-			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	3	128205135	128205135	T	-	DEL	GATA2	ENST00000341105	human	ensembl	74_37	-1	known	frame_shift_del	c.306	p.A103fs	0.998	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA2	HGNC	ENSG00000179348	tier1			9	0	0.00	4	2	33.33
GCSHP3	0	genome.wustl.edu	37	2	206980714	206980715	+	RNA	INS	-	-	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	206980714	206980715	-	T	INS	GCSHP3	ENST00000453039	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.025:0.033	-	-	-	no_errors	AC007383.4	Clone_based_vega_gene	ENSG00000231955	tier1			84	0	0.00	90	13	12.62
GOPC	0	genome.wustl.edu	37	6	117894703	117894703	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	6	117894703	117894703	C	T	SNP	GOPC	ENST00000368498	human	ensembl	74_37	-1	known	missense	c.743	p.R248H	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GOPC	HGNC	ENSG00000047932	tier1	-	-	136	0	0.00	117	21	15.22
GPD2	0	genome.wustl.edu	37	2	157426715	157426715	+	Silent	SNP	A	A	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	157426715	157426715	A	G	SNP	GPD2	ENST00000310454	human	ensembl	74_37	+1	known	silent	c.1593	p.P531	0.951	NULL	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_G3P_DH_FAD-dep	-	no_errors	GPD2	HGNC	ENSG00000115159	tier1	-	-	48	0	0.00	40	6	13.04
GPR98	0	genome.wustl.edu	37	5	89968456	89968456	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	5	89968456	89968456	G	A	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.4846	p.E1616K	1.000	pfam_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	tier1	-	-	75	0	0.00	56	13	18.84
GRB14	0	genome.wustl.edu	37	2	165353533	165353533	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	165353533	165353533	T	C	SNP	GRB14	ENST00000263915	human	ensembl	74_37	-1	known	missense	c.1367	p.Q456R	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB14	HGNC	ENSG00000115290	tier1	-	-	55	0	0.00	57	16	21.92
HECW1	0	genome.wustl.edu	37	7	43351452	43351452	+	Nonsense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	7	43351452	43351452	C	T	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	nonsense	c.118	p.R40*	0.987	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746	tier1	-	-	48	0	0.00	34	10	22.73
HLA-J	0	genome.wustl.edu	37	6	29977317	29977317	+	RNA	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	6	29977317	29977317	G	A	SNP	HLA-J	ENST00000462773	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	HLA-J	HGNC	ENSG00000204622				57	0	0.00	50	5	9.09
HLA-J	0	genome.wustl.edu	37	6	29977327	29977327	+	RNA	SNP	T	T	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	6	29977327	29977327	T	C	SNP	HLA-J	ENST00000462773	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	HLA-J	HGNC	ENSG00000204622				58	0	0.00	47	5	9.62
HLA-J	0	genome.wustl.edu	37	6	29977342	29977342	+	RNA	SNP	A	A	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	6	29977342	29977342	A	T	SNP	HLA-J	ENST00000462773	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	HLA-J	HGNC	ENSG00000204622				50	0	0.00	43	5	10.42
INTS3	0	genome.wustl.edu	37	1	153746474	153746475	+	RNA	INS	-	-	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	153746474	153746475	-	T	INS	INTS3	ENST00000476843	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	INTS3	HGNC	ENSG00000143624	tier1			27	0	0.00	18	3	14.29
ITGA4	0	genome.wustl.edu	37	2	182339903	182339904	+	Frame_Shift_Ins	INS	-	-	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	182339903	182339904	-	A	INS	ITGA4	ENST00000397033	human	ensembl	74_37	+1	known	frame_shift_ins	c.444_445	p.N149fs	1.000:1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	tier1			69	0	0.00	71	13	15.48
KCNA6	0	genome.wustl.edu	37	12	4919422	4919422	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	12	4919422	4919422	G	A	SNP	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	missense	c.215	p.R72Q	0.983	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079	tier1	-	-	119	0	0.00	94	35	26.92
KIF4B	0	genome.wustl.edu	37	5	154393463	154393463	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	5	154393463	154393463	G	A	SNP	KIF4B	ENST00000435029	human	ensembl	74_37	+1	known	missense	c.44	p.R15H	0.995	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650	tier1	rs200942753	-	98	0	0.00	97	8	7.62
KIF6	0	genome.wustl.edu	37	6	39602636	39602636	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	6	39602636	39602636	C	A	SNP	KIF6	ENST00000287152	human	ensembl	74_37	-1	known	missense	c.498	p.L166F	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627	tier1	-	-	56	0	0.00	57	8	12.31
KMT2A	0	genome.wustl.edu	37	11	118374955	118374955	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	11	118374955	118374955	T	C	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.8339	p.M2780T	1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058	tier1	-	-	47	0	0.00	27	21	43.75
KRT9	0	genome.wustl.edu	37	17	39723706	39723706	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	17	39723706	39723706	G	A	SNP	KRT9	ENST00000246662	human	ensembl	74_37	-1	known	missense	c.1691	p.S564F	0.147	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT9	HGNC	ENSG00000171403	tier1	-	-	179	0	0.00	127	27	17.53
KRTAP13-1	0	genome.wustl.edu	37	21	31768834	31768834	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	21	31768834	31768834	G	A	SNP	KRTAP13-1	ENST00000355459	human	ensembl	74_37	+1	known	missense	c.430	p.V144I	0.001	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP13-1	HGNC	ENSG00000198390	tier1	-	-	112	0	0.00	88	15	14.56
KRTAP17-1	0	genome.wustl.edu	37	17	39471766	39471767	+	Frame_Shift_Ins	INS	-	-	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	17	39471766	39471767	-	C	INS	KRTAP17-1	ENST00000334202	human	ensembl	74_37	-1	known	frame_shift_ins	c.137_136	p.S46fs	0.000:0.001	NULL	NULL	-	no_errors	KRTAP17-1	HGNC	ENSG00000186860	tier1			20	0	0.00	27	5	15.62
LIFR	0	genome.wustl.edu	37	5	38484942	38484942	+	Silent	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	5	38484942	38484942	G	T	SNP	LIFR	ENST00000263409	human	ensembl	74_37	-1	known	silent	c.2526	p.I842	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594				55	0	0.00	57	3	5.00
LOC101930657	0	genome.wustl.edu	37	1	717521	717521	+	RNA	SNP	G	G	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	717521	717521	G	C	SNP	LOC101930657	ENST00000457084	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.346	-	-	-	no_errors	RP11-206L10.9	Clone_based_vega_gene	ENSG00000237491	tier1	-	-	99	0	0.00	104	8	7.08
LOXHD1	0	genome.wustl.edu	37	18	44087570	44087570	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	18	44087570	44087570	C	T	SNP	LOXHD1	ENST00000536736	human	ensembl	74_37	-1	known	missense	c.5437	p.V1813I	0.987	NULL	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	-	no_errors	LOXHD1	HGNC	ENSG00000167210	tier1	-	-	82	0	0.00	52	6	10.34
LRP2	0	genome.wustl.edu	37	2	170044680	170044680	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	170044680	170044680	C	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.9128	p.R3043H	0.961	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	tier1	rs143078432	-	99	0	0.00	86	22	20.37
LRRC28	0	genome.wustl.edu	37	15	99796172	99796172	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	15	99796172	99796172	G	A	SNP	LRRC28	ENST00000301981	human	ensembl	74_37	+1	known	missense	c.10	p.E4K	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC28	HGNC	ENSG00000168904	tier1	-	-	77	0	0.00	37	9	19.57
LUM	0	genome.wustl.edu	37	12	91502498	91502498	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	12	91502498	91502498	C	G	SNP	LUM	ENST00000266718	human	ensembl	74_37	-1	known	missense	c.259	p.E87Q	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LUM	HGNC	ENSG00000139329				52	0	0.00	51	3	5.56
MAMSTR	0	genome.wustl.edu	37	19	49218580	49218580	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	19	49218580	49218580	C	T	SNP	MAMSTR	ENST00000318083	human	ensembl	74_37	-1	known	missense	c.364	p.A122T	0.003	NULL	pfam_SAP_dom,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	MAMSTR	HGNC	ENSG00000176909	tier1	-	-	28	0	0.00	43	9	17.31
MAP3K10	0	genome.wustl.edu	37	19	40710471	40710471	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	19	40710471	40710471	G	A	SNP	MAP3K10	ENST00000253055	human	ensembl	74_37	+1	known	missense	c.943	p.V315M	1.000	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K10	HGNC	ENSG00000130758	tier1	-	-	48	0	0.00	35	24	40.68
MAPRE1	0	genome.wustl.edu	37	20	31434572	31434572	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	20	31434572	31434572	C	T	SNP	MAPRE1	ENST00000375571	human	ensembl	74_37	+1	known	missense	c.746	p.T249I	1.000	superfamily_EB1_C	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,superfamily_EB1_C,pfscan_CH-domain	-	no_errors	MAPRE1	HGNC	ENSG00000101367	tier1	-	-	127	0	0.00	118	30	20.27
MBTPS2	0	genome.wustl.edu	37	X	21861368	21861368	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	X	21861368	21861368	G	T	SNP	MBTPS2	ENST00000379484	human	ensembl	74_37	+1	known	missense	c.156	p.W52C	1.000	NULL	pfam_Peptidase_M50,superfamily_PDZ,prints_MBTPS2	-	no_errors	MBTPS2	HGNC	ENSG00000012174	tier1	-	-	38	0	0.00	31	24	42.86
MKI67	0	genome.wustl.edu	37	10	129908757	129908757	+	Silent	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	10	129908757	129908757	C	T	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	silent	c.2301	p.P767	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				36	0	0.00	38	2	5.00
MMAB	0	genome.wustl.edu	37	12	109999611	109999611	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	12	109999611	109999611	C	G	SNP	MMAB	ENST00000545712	human	ensembl	74_37	-1	known	missense	c.395	p.C132S	0.865	pfam_AdoCbl_synth_CblAdoTrfase-like,superfamily_AdoCbl_synth_CblAdoTrfase-like,tigrfam_AdoCbl_synth_CblAdoTrfase-like	pfam_AdoCbl_synth_CblAdoTrfase-like,superfamily_AdoCbl_synth_CblAdoTrfase-like,tigrfam_AdoCbl_synth_CblAdoTrfase-like	-	no_errors	MMAB	HGNC	ENSG00000139428				55	0	0.00	36	2	5.13
MMD2	0	genome.wustl.edu	37	7	4965092	4965092	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	7	4965092	4965092	G	T	SNP	MMD2	ENST00000404774	human	ensembl	74_37	-1	known	missense	c.119	p.A40D	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	MMD2	HGNC	ENSG00000136297	tier1	-	-	35	0	0.00	34	4	10.53
MORC1	0	genome.wustl.edu	37	3	108698360	108698360	+	Splice_Site	SNP	A	A	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	3	108698360	108698360	A	T	SNP	MORC1	ENST00000232603	human	ensembl	74_37	-1	known	splice_site	c.2477+2	e24+2	1.000	-	-	-	no_errors	MORC1	HGNC	ENSG00000114487	tier1	-	-	33	0	0.00	28	13	30.95
MROH1	0	genome.wustl.edu	37	8	145245830	145245830	+	Nonsense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	8	145245830	145245830	G	T	SNP	MROH1	ENST00000326134	human	ensembl	74_37	+1	known	nonsense	c.706	p.E236*	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	MROH1	HGNC	ENSG00000179832				24	0	0.00	21	4	16.00
MSL1	0	genome.wustl.edu	37	17	38285497	38285497	+	Splice_Site	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	17	38285497	38285497	G	T	SNP	MSL1	ENST00000398532	human	ensembl	74_37	+1	known	splice_site	c.993-1	e3-1	1.000	-	-	-	no_errors	MSL1	HGNC	ENSG00000188895				26	0	0.00	25	2	7.41
MSL3P1	0	genome.wustl.edu	37	2	234775170	234775170	+	RNA	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	234775170	234775170	C	T	SNP	MSL3P1	ENST00000438684	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.967	-	-	-	no_errors	MSL3P1	HGNC	ENSG00000224287				26	0	0.00	26	3	10.34
MT-RNR2	0	genome.wustl.edu	37	MT	3091	3091	+	RNA	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	MT	3091	3091	G	A	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	127	0	0.00	25	16	39.02
MT-TS2	0	genome.wustl.edu	37	MT	12244	12244	+	RNA	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	MT	12244	12244	G	T	SNP	MT-TS2	ENST00000387449	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-TS2	HGNC	ENSG00000210184	tier1	-	-	31	0	0.00	2	2	50.00
MTERF	0	genome.wustl.edu	37	7	91509448	91509448	+	RNA	SNP	C	C	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	7	91509448	91509448	C	A	SNP	MTERF	ENST00000481516	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTERF	HGNC	ENSG00000127989	tier1	-	-	16	0	0.00	15	5	25.00
MYH9	0	genome.wustl.edu	37	22	36685336	36685336	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	22	36685336	36685336	G	A	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.4352	p.A1451V	0.999	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345	tier1	-	-	54	0	0.00	37	10	21.28
NADK	0	genome.wustl.edu	37	1	1688112	1688112	+	RNA	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	1688112	1688112	C	T	SNP	NADK	ENST00000492768	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	NADK	HGNC	ENSG00000008130	tier1	-	-	22	0	0.00	24	4	14.29
NAT8	0	genome.wustl.edu	37	2	73868104	73868104	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	73868104	73868104	G	A	SNP	NAT8	ENST00000272425	human	ensembl	74_37	-1	known	missense	c.652	p.H218Y	0.018	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT8	HGNC	ENSG00000144035	tier1	-	-	39	0	0.00	33	12	26.67
NLRC4	0	genome.wustl.edu	37	2	32477568	32477568	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	32477568	32477568	T	C	SNP	NLRC4	ENST00000360906	human	ensembl	74_37	-1	known	missense	c.182	p.K61R	1.000	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106				45	0	0.00	47	3	6.00
NLRP11	0	genome.wustl.edu	37	19	56321171	56321171	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	19	56321171	56321171	G	T	SNP	NLRP11	ENST00000443188	human	ensembl	74_37	-1	known	missense	c.805	p.P269T	0.001	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873				47	0	0.00	44	3	6.25
NPAP1	0	genome.wustl.edu	37	15	24921975	24921975	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	15	24921975	24921975	G	T	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.961	p.A321S	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823				15	0	0.00	6	3	33.33
OR2M7	0	genome.wustl.edu	37	1	248487210	248487210	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	248487210	248487210	C	T	SNP	OR2M7	ENST00000317965	human	ensembl	74_37	-1	known	missense	c.661	p.V221I	0.310	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M7	HGNC	ENSG00000177186	tier1	-	-	162	0	0.00	113	48	29.81
OR4C12	0	genome.wustl.edu	37	11	50003895	50003895	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	11	50003895	50003895	G	T	SNP	OR4C12	ENST00000335238	human	ensembl	74_37	-1	known	missense	c.143	p.T48N	0.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4C12	HGNC	ENSG00000221954	tier1	-	-	87	0	0.00	58	28	32.56
OTOF	0	genome.wustl.edu	37	2	26700314	26700314	+	Silent	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	26700314	26700314	C	T	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	silent	c.2376	p.R792	1.000	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				88	0	0.00	51	3	5.56
PARP4	0	genome.wustl.edu	37	13	25068765	25068765	+	Silent	SNP	T	T	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	13	25068765	25068765	T	A	SNP	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	silent	c.687	p.L229	0.220	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	tier1	-	-	106	0	0.00	98	9	8.41
PCDH10	0	genome.wustl.edu	37	4	134071343	134071343	+	Silent	SNP	C	C	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	4	134071343	134071343	C	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	silent	c.48	p.V16	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	tier1	-	-	62	0	0.00	67	14	17.28
PCDH11X	0	genome.wustl.edu	37	X	91873880	91873880	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	X	91873880	91873880	C	T	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	missense	c.3985	p.R1329C	0.136	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	tier1	-	-	51	0	0.00	34	11	24.44
PCDHA10	0	genome.wustl.edu	37	5	140236546	140236546	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	5	140236546	140236546	G	T	SNP	PCDHA10	ENST00000307360	human	ensembl	74_37	+1	known	missense	c.913	p.D305Y	0.225	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120				22	0	0.00	20	3	13.04
PCDHA13	0	genome.wustl.edu	37	5	140263491	140263491	+	Silent	SNP	C	C	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	5	140263491	140263491	C	A	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	silent	c.1638	p.G546	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389	tier1	-	-	179	0	0.00	159	43	21.29
PCDHA6	0	genome.wustl.edu	37	5	140209709	140209709	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	5	140209709	140209709	C	T	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	missense	c.2033	p.A678V	0.002	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842	tier1	-	-	85	0	0.00	71	25	26.04
PCDHGA4	0	genome.wustl.edu	37	5	140734952	140734952	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	5	140734952	140734952	G	A	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	+1	known	missense	c.185	p.R62H	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	tier1	-	-	71	0	0.00	61	18	22.78
PCNP	0	genome.wustl.edu	37	3	101304301	101304301	+	Silent	SNP	A	A	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	3	101304301	101304301	A	G	SNP	PCNP	ENST00000265260	human	ensembl	74_37	+1	known	silent	c.300	p.P100	1.000	NULL	NULL	-	no_errors	PCNP	HGNC	ENSG00000081154	tier1	-	-	61	0	0.00	59	15	20.27
PDCD10	0	genome.wustl.edu	37	3	167437888	167437888	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	3	167437888	167437888	T	C	SNP	PDCD10	ENST00000392750	human	ensembl	74_37	-1	known	missense	c.58	p.M20V	1.000	pfam_DUF1241	pfam_DUF1241	-	no_errors	PDCD10	HGNC	ENSG00000114209	tier1	rs138275885	-	68	0	0.00	71	24	25.26
PDE4DIP	0	genome.wustl.edu	37	1	144881481	144881481	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	144881481	144881481	C	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.3715	p.A1239T	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	tier1	-	-	178	0	0.00	152	14	8.43
PF4	0	genome.wustl.edu	37	4	74847138	74847138	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	4	74847138	74847138	G	T	SNP	PF4	ENST00000296029	human	ensembl	74_37	-1	known	missense	c.214	p.L72M	0.310	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	-	no_errors	PF4	HGNC	ENSG00000163737	tier1	-	-	54	0	0.00	43	14	24.56
PFKM	0	genome.wustl.edu	37	12	48516582	48516582	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	12	48516582	48516582	G	A	SNP	PFKM	ENST00000312352	human	ensembl	74_37	+1	known	missense	c.25	p.A9T	1.000	pirsf_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556	tier1	-	-	42	0	0.00	22	3	12.00
PIN1P1	0	genome.wustl.edu	37	1	70385455	70385455	+	RNA	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	70385455	70385455	C	T	SNP	PIN1P1	ENST00000412108	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.664	-	-	-	no_errors	PIN1P1	HGNC	ENSG00000229359	tier1	-	-	75	0	0.00	64	6	8.57
PIPSL	0	genome.wustl.edu	37	10	95720806	95720806	+	RNA	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	10	95720806	95720806	C	T	SNP	PIPSL	ENST00000480546	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	PIPSL	HGNC	ENSG00000180764	tier1	-	-	80	0	0.00	72	17	19.10
PPP2R1A	0	genome.wustl.edu	37	19	52729031	52729031	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	19	52729031	52729031	G	A	SNP	PPP2R1A	ENST00000322088	human	ensembl	74_37	+1	known	missense	c.1723	p.V575I	0.999	superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1A	HGNC	ENSG00000105568	tier1	-	-	53	0	0.00	39	14	26.42
PRDM15	0	genome.wustl.edu	37	21	43221756	43221756	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	21	43221756	43221756	C	T	SNP	PRDM15	ENST00000269844	human	ensembl	74_37	-1	known	missense	c.4168	p.V1390M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM15	HGNC	ENSG00000141956	tier1	-	-	61	0	0.00	52	9	14.75
PRELID1P1	0	genome.wustl.edu	37	6	126964866	126964866	+	RNA	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	6	126964866	126964866	G	T	SNP	PRELID1P1	ENST00000567272	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.219	-	-	-	no_errors	PRELID1P1	HGNC	ENSG00000217325	tier1	-	-	47	0	0.00	58	13	18.31
PRMT8	0	genome.wustl.edu	37	12	3600835	3600835	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	12	3600835	3600835	A	T	SNP	PRMT8	ENST00000382622	human	ensembl	74_37	+1	known	missense	c.44	p.K15I	1.000	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT8	HGNC	ENSG00000111218	tier1	-	-	17	0	0.00	20	4	16.00
PRSS3	0	genome.wustl.edu	37	9	33798037	33798037	+	Silent	SNP	T	T	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	9	33798037	33798037	T	C	SNP	PRSS3	ENST00000361005	human	ensembl	74_37	+1	known	silent	c.582	p.T194	0.688	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS3	HGNC	ENSG00000010438				102	0	0.00	84	5	5.62
PSG1	0	genome.wustl.edu	37	19	43376083	43376083	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	19	43376083	43376083	A	G	SNP	PSG1	ENST00000312439	human	ensembl	74_37	-1	known	missense	c.545	p.M182T	0.013	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG1	HGNC	ENSG00000231924	tier1	-	-	215	0	0.00	240	17	6.61
PSG9	0	genome.wustl.edu	37	19	43763024	43763024	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	19	43763024	43763024	T	A	SNP	PSG9	ENST00000270077	human	ensembl	74_37	-1	known	missense	c.973	p.I325F	0.023	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG9	HGNC	ENSG00000183668	tier1	rs140571643	-	226	0	0.00	218	68	23.78
PTPN23	0	genome.wustl.edu	37	3	47449841	47449841	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	3	47449841	47449841	C	G	SNP	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	missense	c.1191	p.F397L	1.000	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201	tier1	-	-	88	0	0.00	55	14	20.29
RAB5C	0	genome.wustl.edu	37	17	40282551	40282551	+	Silent	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	17	40282551	40282551	G	A	SNP	RAB5C	ENST00000547517	human	ensembl	74_37	-1	putative	silent	c.69	p.H23	0.987	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB5C	HGNC	ENSG00000108774	tier1	-	-	17	0	0.00	27	7	20.59
RANBP6	0	genome.wustl.edu	37	9	6012690	6012690	+	Frame_Shift_Del	DEL	T	T	-			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	9	6012690	6012690	T	-	DEL	RANBP6	ENST00000259569	human	ensembl	74_37	-1	known	frame_shift_del	c.2918	p.N973fs	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040	tier1			42	0	0.00	41	3	6.82
RIBC2	0	genome.wustl.edu	37	22	45821833	45821833	+	Silent	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	22	45821833	45821833	C	T	SNP	RIBC2	ENST00000538017	human	ensembl	74_37	+1	known	silent	c.666	p.I222	0.000	pfam_RIB43A	pfam_RIB43A	-	no_errors	RIBC2	HGNC	ENSG00000128408	tier1	-	-	33	0	0.00	22	8	26.67
RNF103	0	genome.wustl.edu	37	2	86847539	86847539	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	86847539	86847539	C	T	SNP	RNF103	ENST00000237455	human	ensembl	74_37	-1	known	missense	c.280	p.E94K	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305	tier1	-	-	54	0	0.00	74	4	5.13
RPUSD2	0	genome.wustl.edu	37	15	40864010	40864010	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	15	40864010	40864010	C	T	SNP	RPUSD2	ENST00000315616	human	ensembl	74_37	+1	known	missense	c.814	p.R272W	1.000	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_RluC/D	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_RluC/D	-	no_errors	RPUSD2	HGNC	ENSG00000166133	tier1	rs140454770	-	52	0	0.00	53	10	15.87
RTN4R	0	genome.wustl.edu	37	22	20229382	20229382	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	22	20229382	20229382	G	A	SNP	RTN4R	ENST00000043402	human	ensembl	74_37	-1	known	missense	c.1274	p.T425I	0.984	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4R	HGNC	ENSG00000040608	tier1	-	-	24	0	0.00	8	5	38.46
RYR2	0	genome.wustl.edu	37	1	237777617	237777617	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	237777617	237777617	C	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.5183	p.T1728M	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	tier1	-	-	69	0	0.00	50	15	23.08
SELL	0	genome.wustl.edu	37	1	169670756	169670756	+	Silent	SNP	A	A	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	169670756	169670756	A	G	SNP	SELL	ENST00000236147	human	ensembl	74_37	-1	known	silent	c.1065	p.V355	0.076	pirsf_L-selectin	pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_EG-like_dom,smart_Sushi_SCR_CCP,pirsf_L-selectin,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELL	HGNC	ENSG00000188404	tier1	-	-	39	0	0.00	38	6	13.64
SEMA3E	0	genome.wustl.edu	37	7	83031961	83031961	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	7	83031961	83031961	G	T	SNP	SEMA3E	ENST00000307792	human	ensembl	74_37	-1	known	missense	c.1130	p.P377Q	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3E	HGNC	ENSG00000170381	tier1	-	-	76	0	0.00	62	4	6.06
SENP7	0	genome.wustl.edu	37	3	101059041	101059041	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	3	101059041	101059041	G	T	SNP	SENP7	ENST00000394095	human	ensembl	74_37	-1	known	missense	c.2255	p.P752H	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468				65	0	0.00	72	4	5.26
SHROOM2	0	genome.wustl.edu	37	X	9900611	9900611	+	Silent	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	X	9900611	9900611	G	A	SNP	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	silent	c.3288	p.T1096	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	tier1	-	-	41	0	0.00	24	25	51.02
SIDT1	0	genome.wustl.edu	37	3	113346614	113346614	+	RNA	SNP	T	T	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	3	113346614	113346614	T	A	SNP	SIDT1	ENST00000463226	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SIDT1	HGNC	ENSG00000072858	tier1	-	-	66	0	0.00	62	6	8.82
SLC12A3	0	genome.wustl.edu	37	16	56918001	56918001	+	Silent	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	16	56918001	56918001	G	A	SNP	SLC12A3	ENST00000438926	human	ensembl	74_37	+1	known	silent	c.1710	p.A570	0.145	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_NaCl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A3	HGNC	ENSG00000070915	tier1	-	-	64	0	0.00	51	4	7.27
SLC2A14	0	genome.wustl.edu	37	12	7981378	7981378	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	12	7981378	7981378	T	A	SNP	SLC2A14	ENST00000396589	human	ensembl	74_37	-1	known	missense	c.667	p.S223C	0.325	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A14	HGNC	ENSG00000173262	tier1	-	-	70	0	0.00	48	18	27.27
SMAD9	0	genome.wustl.edu	37	13	37439893	37439893	+	Missense_Mutation	SNP	A	A	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	13	37439893	37439893	A	C	SNP	SMAD9	ENST00000379826	human	ensembl	74_37	-1	known	missense	c.784	p.F262V	1.000	superfamily_SMAD_FHA_domain	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD9	HGNC	ENSG00000120693	tier1	-	-	57	0	0.00	55	19	25.68
SMC2	0	genome.wustl.edu	37	9	106857810	106857810	+	Silent	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	9	106857810	106857810	C	T	SNP	SMC2	ENST00000286398	human	ensembl	74_37	+1	known	silent	c.145	p.L49	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824	tier1	-	-	59	0	0.00	63	10	13.70
SNHG14	0	genome.wustl.edu	37	15	25227118	25227118	+	RNA	SNP	A	A	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	15	25227118	25227118	A	C	SNP	SNHG14	ENST00000551631	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078	tier1	-	-	15	0	0.00	19	5	20.83
SNX11	0	genome.wustl.edu	37	17	46189952	46189952	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	17	46189952	46189952	G	A	SNP	SNX11	ENST00000359238	human	ensembl	74_37	+1	known	missense	c.59	p.R20H	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX11	HGNC	ENSG00000002919	tier1	-	-	61	0	0.00	56	12	17.65
SPATA31A6	0	genome.wustl.edu	37	9	43628000	43628000	+	Silent	SNP	C	C	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	9	43628000	43628000	C	A	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	silent	c.687	p.L229	0.000	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775	tier1	-	-	34	0	0.00	21	10	32.26
SPHAR	0	genome.wustl.edu	37	1	229440935	229440935	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	229440935	229440935	C	G	SNP	SPHAR	ENST00000366688	human	ensembl	74_37	+1	known	missense	c.54	p.C18W	0.000	NULL	NULL	-	no_errors	SPHAR	HGNC	ENSG00000213029	tier1	-	-	28	0	0.00	29	7	19.44
SPTA1	0	genome.wustl.edu	37	1	158627319	158627319	+	Missense_Mutation	SNP	T	T	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	158627319	158627319	T	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.2753	p.K918T	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	tier1	-	-	86	0	0.00	68	11	13.92
SPZ1	0	genome.wustl.edu	37	5	79616605	79616605	+	Nonsense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	5	79616605	79616605	C	T	SNP	SPZ1	ENST00000296739	human	ensembl	74_37	+1	known	nonsense	c.571	p.Q191*	0.045	NULL	NULL	-	no_errors	SPZ1	HGNC	ENSG00000164299				39	0	0.00	41	4	8.89
SRPK1	0	genome.wustl.edu	37	6	35837647	35837647	+	Silent	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	6	35837647	35837647	C	T	SNP	SRPK1	ENST00000373825	human	ensembl	74_37	-1	known	silent	c.1023	p.T341	0.030	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK1	HGNC	ENSG00000096063	tier1	-	-	30	0	0.00	37	4	9.76
SSH2	0	genome.wustl.edu	37	17	28088355	28088355	+	RNA	SNP	C	C	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	17	28088355	28088355	C	A	SNP	SSH2	ENST00000324677	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SSH2	HGNC	ENSG00000141298	tier1	-	-	33	0	0.00	20	7	25.93
SWT1	0	genome.wustl.edu	37	1	185143719	185143719	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	185143719	185143719	G	A	SNP	SWT1	ENST00000367500	human	ensembl	74_37	+1	known	missense	c.440	p.G147E	0.000	NULL	smart_PIN_dom	-	no_errors	SWT1	HGNC	ENSG00000116668	tier1	-	-	42	0	0.00	50	5	9.09
SYVN1	0	genome.wustl.edu	37	11	64900951	64900951	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	11	64900951	64900951	G	T	SNP	SYVN1	ENST00000377190	human	ensembl	74_37	-1	known	missense	c.122	p.P41H	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SYVN1	HGNC	ENSG00000162298				92	0	0.00	75	4	5.06
TBC1D3P1-DHX40P1	0	genome.wustl.edu	37	17	58085562	58085562	+	RNA	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	17	58085562	58085562	C	T	SNP	TBC1D3P1-DHX40P1	ENST00000407042	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TBC1D3P1-DHX40P1	HGNC	ENSG00000267104	tier1	-	-	26	0	0.00	22	8	26.67
TBC1D8	0	genome.wustl.edu	37	2	101650137	101650137	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	101650137	101650137	C	T	SNP	TBC1D8	ENST00000409318	human	ensembl	74_37	-1	known	missense	c.1687	p.E563K	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634	tier1	-	-	89	0	0.00	61	22	26.51
TBL1Y	0	genome.wustl.edu	37	Y	6939642	6939642	+	Silent	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	Y	6939642	6939642	C	T	SNP	TBL1Y	ENST00000346432	human	ensembl	74_37	+1	known	silent	c.774	p.F258	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1Y	HGNC	ENSG00000092377	tier1	-	-	96	0	0.00	62	39	38.61
TENM4	0	genome.wustl.edu	37	11	78567195	78567195	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	11	78567195	78567195	G	C	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.1284	p.D428E	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256	tier1	-	-	15	0	0.00	21	5	19.23
TFPI2	0	genome.wustl.edu	37	7	93519535	93519535	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	7	93519535	93519535	C	A	SNP	TFPI2	ENST00000222543	human	ensembl	74_37	-1	known	missense	c.185	p.R62L	0.000	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI2	HGNC	ENSG00000105825	tier1	-	-	58	0	0.00	68	20	22.73
TGFBR2	0	genome.wustl.edu	37	3	30732996	30732996	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	3	30732996	30732996	C	T	SNP	TGFBR2	ENST00000359013	human	ensembl	74_37	+1	known	missense	c.1684	p.R562C	1.000	pirsf_Transform_growth_fac-b_typ-2,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513				35	0	0.00	32	3	8.57
TGM4	0	genome.wustl.edu	37	3	44948486	44948486	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	3	44948486	44948486	G	T	SNP	TGM4	ENST00000296125	human	ensembl	74_37	+1	known	missense	c.1121	p.G374V	0.934	NULL	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM4	HGNC	ENSG00000163810	tier1	-	-	88	0	0.00	60	5	7.69
TMEM254	0	genome.wustl.edu	37	10	81841955	81841955	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	10	81841955	81841955	G	T	SNP	TMEM254	ENST00000372281	human	ensembl	74_37	+1	known	missense	c.246	p.L82F	0.968	NULL	NULL	-	no_errors	TMEM254	HGNC	ENSG00000133678	tier1	-	-	129	0	0.00	87	6	6.45
TMEM60	0	genome.wustl.edu	37	7	77423460	77423460	+	Frame_Shift_Del	DEL	T	T	-			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	7	77423460	77423460	T	0	DEL	TMEM60	ENST00000257663	human	ensembl	74_37	-1	known	frame_shift_del	c.231	p.A78fs	0.998	NULL	pfam_TM_Fragile-X-F-assoc	-	no_errors	TMEM60	HGNC	ENSG00000135211				89	0	0.00	108	7	6.09
TMEM70	0	genome.wustl.edu	37	8	74891072	74891072	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	8	74891072	74891072	G	T	SNP	TMEM70	ENST00000312184	human	ensembl	74_37	+1	known	missense	c.292	p.G98C	1.000	NULL	pfam_DUF1301_TMEM70	-	no_errors	TMEM70	HGNC	ENSG00000175606				71	0	0.00	74	5	6.33
TRPC7	0	genome.wustl.edu	37	5	135610523	135610523	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	5	135610523	135610523	G	T	SNP	TRPC7	ENST00000513104	human	ensembl	74_37	-1	known	missense	c.966	p.F322L	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018				24	0	0.00	18	2	10.00
TSC22D2	0	genome.wustl.edu	37	3	150127200	150127200	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	3	150127200	150127200	G	T	SNP	TSC22D2	ENST00000361875	human	ensembl	74_37	+1	known	missense	c.63	p.Q21H	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D2	HGNC	ENSG00000196428				35	0	0.00	36	4	10.00
TSPAN17	0	genome.wustl.edu	37	5	176082007	176082007	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	5	176082007	176082007	G	A	SNP	TSPAN17	ENST00000310032	human	ensembl	74_37	+1	known	missense	c.568	p.V190I	0.993	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN17	HGNC	ENSG00000048140				82	0	0.00	70	5	6.67
TTC21A	0	genome.wustl.edu	37	3	39178769	39178769	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	3	39178769	39178769	C	A	SNP	TTC21A	ENST00000301819	human	ensembl	74_37	+1	known	missense	c.3365	p.S1122Y	0.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026	tier1	-	-	74	0	0.00	42	4	8.70
TTC7B	0	genome.wustl.edu	37	14	91077133	91077133	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	14	91077133	91077133	C	T	SNP	TTC7B	ENST00000357056	human	ensembl	74_37	-1	known	missense	c.1919	p.R640Q	1.000	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914	tier1	-	-	54	0	0.00	36	18	32.73
TTLL10	0	genome.wustl.edu	37	1	1114645	1114645	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	1114645	1114645	G	A	SNP	TTLL10	ENST00000379289	human	ensembl	74_37	+1	known	missense	c.50	p.R17Q	0.001	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL10	HGNC	ENSG00000162571	tier1	-	-	29	0	0.00	25	6	19.35
UNC80	0	genome.wustl.edu	37	2	210640650	210640650	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	2	210640650	210640650	G	T	SNP	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	missense	c.179	p.G60V	1.000	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406				32	0	0.00	34	2	5.56
USHBP1	0	genome.wustl.edu	37	19	17373543	17373543	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	19	17373543	17373543	C	T	SNP	USHBP1	ENST00000252597	human	ensembl	74_37	-1	known	missense	c.460	p.E154K	0.000	NULL	pfam_USH1C-bd_PDZ_domain	-	no_errors	USHBP1	HGNC	ENSG00000130307	tier1	-	-	121	0	0.00	76	46	37.70
WASH6P	0	genome.wustl.edu	37	X	155254025	155254025	+	RNA	DEL	C	C	-			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	X	155254025	155254025	C	-	DEL	WASH6P	ENST00000461007	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.049	-	-	-	no_errors	WASH6P	HGNC	ENSG00000182484	tier1			58	0	0.00	44	12	21.43
WBP11	0	genome.wustl.edu	37	12	14940118	14940118	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	12	14940118	14940118	C	T	SNP	WBP11	ENST00000261167	human	ensembl	74_37	-1	known	missense	c.1807	p.D603N	1.000	NULL	pfam_WW_dom-bd_prot_11	-	no_errors	WBP11	HGNC	ENSG00000084463				59	0	0.00	71	4	5.33
XRN1	0	genome.wustl.edu	37	3	142037736	142037736	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	3	142037736	142037736	C	T	SNP	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	missense	c.4411	p.V1471I	0.988	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127	tier1	-	-	72	0	0.00	64	11	14.67
ZC3H18	0	genome.wustl.edu	37	16	88694106	88694106	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	16	88694106	88694106	G	A	SNP	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	missense	c.2185	p.E729K	0.996	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				31	0	0.00	35	3	7.69
ZIC4	0	genome.wustl.edu	37	3	147105846	147105846	+	RNA	SNP	C	C	T			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	3	147105846	147105846	C	T	SNP	ZIC4	ENST00000472749	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZIC4	HGNC	ENSG00000174963	tier1	-	-	18	0	0.00	19	8	29.63
ZMYM6	0	genome.wustl.edu	37	1	35496350	35496350	+	RNA	SNP	A	A	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	35496350	35496350	A	G	SNP	ZMYM6	ENST00000493328	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ZMYM6	HGNC	ENSG00000163867	tier1	-	-	45	0	0.00	27	7	20.59
ZNF677	0	genome.wustl.edu	37	19	53747130	53747130	+	Silent	SNP	A	A	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	19	53747130	53747130	A	G	SNP	ZNF677	ENST00000333952	human	ensembl	74_37	-1	known	silent	c.36	p.D12	0.994	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF677	HGNC	ENSG00000197928	tier1	-	-	63	0	0.00	84	20	19.23
ZNF815P	0	genome.wustl.edu	37	7	5886611	5886611	+	RNA	SNP	C	C	G			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	7	5886611	5886611	C	G	SNP	ZNF815P	ENST00000421890	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF815P	HGNC	ENSG00000235944				26	0	0.00	38	5	11.63
ZSWIM5	0	genome.wustl.edu	37	1	45553566	45553566	+	Silent	SNP	G	G	A			TCGA-L5-A4OO-01A-11D-A27G-09	TCGA-L5-A4OO-11A-12D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5b1ad04c-dea2-4b4e-a5ec-40572126c885	954881bf-dc65-418e-8862-1d327c701757	1	45553566	45553566	G	A	SNP	ZSWIM5	ENST00000359600	human	ensembl	74_37	-1	known	silent	c.939	p.I313	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415	tier1	-	-	66	0	0.00	57	16	21.92
