Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABHD17A	0	genome.wustl.edu	37	19	1881527	1881527	+	Frame_Shift_Del	DEL	G	G	-			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	19	1881527	1881527	G	-	DEL	ABHD17A	ENST00000250974	human	ensembl	74_37	-1	known	frame_shift_del	c.39	p.C14fs	1.000	NULL	pfam_Dienelactn_hydro	-	no_errors	ABHD17A	HGNC	ENSG00000129968	tier1			20	0	0.00	6	3	33.33
ABHD17A	0	genome.wustl.edu	37	19	1881529	1881530	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	19	1881529	1881530	AG	-	DEL	ABHD17A	ENST00000250974	human	ensembl	74_37	-1	known	frame_shift_del	c.37_36	p.F13fs	1.000:0.997	NULL	pfam_Dienelactn_hydro	-	no_errors	ABHD17A	HGNC	ENSG00000129968	tier1			20	0	0.00	6	3	33.33
ABRA	0	genome.wustl.edu	37	8	107781944	107781944	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	8	107781944	107781944	G	A	SNP	ABRA	ENST00000311955	human	ensembl	74_37	-1	known	missense	c.475	p.R159W	0.985	NULL	NULL	-	no_errors	ABRA	HGNC	ENSG00000174429	tier1	rs148548347	-	107	0	0.00	81	22	21.36
ACBD5	0	genome.wustl.edu	37	10	27524039	27524039	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	10	27524039	27524039	G	T	SNP	ACBD5	ENST00000375888	human	ensembl	74_37	-1	known	missense	c.278	p.P93H	1.000	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD5	HGNC	ENSG00000107897				29	0	0.00	36	4	10.00
ACOT12	0	genome.wustl.edu	37	5	80628300	80628300	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	5	80628300	80628300	C	A	SNP	ACOT12	ENST00000307624	human	ensembl	74_37	-1	known	missense	c.1387	p.D463Y	0.029	pfam_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_Thioestr_supf,pfam_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	ACOT12	HGNC	ENSG00000172497	tier1	-	-	34	0	0.00	56	10	15.15
ADAM32	0	genome.wustl.edu	37	8	39007314	39007314	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	8	39007314	39007314	A	T	SNP	ADAM32	ENST00000379907	human	ensembl	74_37	+1	known	missense	c.281	p.Q94L	0.278	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM32	HGNC	ENSG00000197140	tier1	-	-	38	0	0.00	32	8	20.00
ADCY2	0	genome.wustl.edu	37	5	7520985	7520985	+	Silent	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	5	7520985	7520985	G	A	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	silent	c.543	p.P181	0.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295	tier1	-	-	79	0	0.00	81	12	12.90
ALDH3B1	0	genome.wustl.edu	37	11	67787219	67787219	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	11	67787219	67787219	G	C	SNP	ALDH3B1	ENST00000007633	human	ensembl	74_37	+1	known	missense	c.513	p.E171D	0.993	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3B1	HGNC	ENSG00000006534	tier1	-	-	142	0	0.00	125	27	17.76
ANAPC2	0	genome.wustl.edu	37	9	140070157	140070157	+	RNA	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	9	140070157	140070157	C	A	SNP	ANAPC2	ENST00000483432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.927	-	-	-	no_errors	ANAPC2	HGNC	ENSG00000176248	tier1	-	-	122	0	0.00	83	11	11.58
ANK2	0	genome.wustl.edu	37	4	114293758	114293758	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	4	114293758	114293758	G	T	SNP	ANK2	ENST00000510275	human	ensembl	74_37	+1	novel	missense	c.1381	p.V461F	1.000	NULL	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	-	no_errors	ANK2	HGNC	ENSG00000145362				45	0	0.00	49	5	9.26
ANTXR1	0	genome.wustl.edu	37	2	69351771	69351771	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	2	69351771	69351771	A	G	SNP	ANTXR1	ENST00000303714	human	ensembl	74_37	+1	known	missense	c.947	p.H316R	1.000	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_extracel	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_extracel,pfam_Anthrax_toxin_rcpt_C,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR1	HGNC	ENSG00000169604	tier1	-	-	57	0	0.00	58	13	18.31
ARHGAP31	0	genome.wustl.edu	37	3	119120938	119120938	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	3	119120938	119120938	G	A	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	missense	c.1339	p.A447T	0.999	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				32	0	0.00	31	3	8.82
ASNS	0	genome.wustl.edu	37	7	97482391	97482391	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	7	97482391	97482391	T	C	SNP	ASNS	ENST00000175506	human	ensembl	74_37	-1	known	missense	c.1457	p.Q486R	1.000	NULL	pfam_Asn_synthase,pfam_GATase_dom,tigrfam_Asn_synth_AEB	-	no_errors	ASNS	HGNC	ENSG00000070669				32	0	0.00	29	8	21.62
ATP8A2	0	genome.wustl.edu	37	13	26343263	26343263	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	13	26343263	26343263	G	A	SNP	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	missense	c.2464	p.G822S	1.000	superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932	tier1	-	-	73	0	0.00	43	9	17.31
B4GALNT1	0	genome.wustl.edu	37	12	58022875	58022875	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	12	58022875	58022875	G	A	SNP	B4GALNT1	ENST00000341156	human	ensembl	74_37	-1	known	missense	c.767	p.P256L	0.038	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT1	HGNC	ENSG00000135454	tier1	rs200510000	-	64	0	0.00	44	8	15.38
BBS4	0	genome.wustl.edu	37	15	73029250	73029250	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	15	73029250	73029250	C	G	SNP	BBS4	ENST00000395205	human	ensembl	74_37	+1	known	missense	c.1420	p.Q474E	1.000	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	BBS4	HGNC	ENSG00000140463				31	0	0.00	37	3	7.32
C9orf131	0	genome.wustl.edu	37	9	35043395	35043395	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	9	35043395	35043395	G	T	SNP	C9orf131	ENST00000312292	human	ensembl	74_37	+1	known	missense	c.769	p.A257S	0.004	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038	tier1	-	-	43	0	0.00	56	4	6.67
CCDC73	0	genome.wustl.edu	37	11	32635220	32635220	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	11	32635220	32635220	C	T	SNP	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	missense	c.2644	p.G882R	1.000	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714	tier1	rs201070131	-	67	0	0.00	47	5	9.62
CD63	0	genome.wustl.edu	37	12	56121049	56121049	+	Silent	SNP	A	A	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	12	56121049	56121049	A	G	SNP	CD63	ENST00000257857	human	ensembl	74_37	-1	known	silent	c.141	p.A47	0.001	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD63	HGNC	ENSG00000135404				31	0	0.00	42	3	6.67
CDC42BPB	0	genome.wustl.edu	37	14	103433438	103433438	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	14	103433438	103433438	C	T	SNP	CDC42BPB	ENST00000361246	human	ensembl	74_37	-1	known	missense	c.2416	p.A806T	0.992	NULL	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	CDC42BPB	HGNC	ENSG00000198752	tier1	-	-	55	0	0.00	75	10	11.76
CDH7	0	genome.wustl.edu	37	18	63430163	63430163	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	18	63430163	63430163	C	A	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	missense	c.85	p.L29I	0.996	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138	tier1	-	-	53	0	0.00	52	10	16.13
CEACAM3	0	genome.wustl.edu	37	19	42314366	42314366	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	19	42314366	42314366	G	T	SNP	CEACAM3	ENST00000357396	human	ensembl	74_37	+1	known	missense	c.601	p.G201C	0.000	NULL	pfam_Ig_V-set	-	no_errors	CEACAM3	HGNC	ENSG00000170956				74	0	0.00	66	4	5.71
CEP170B	0	genome.wustl.edu	37	14	105360904	105360904	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	14	105360904	105360904	C	T	SNP	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	missense	c.4504	p.R1502W	0.906	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814	tier1	-	-	106	0	0.00	75	7	8.54
CEPT1	0	genome.wustl.edu	37	1	111703575	111703576	+	RNA	INS	-	-	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	111703575	111703576	-	A	INS	CEPT1	ENST00000480324	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.073:0.207	-	-	-	no_errors	CEPT1	HGNC	ENSG00000134255	tier1			16	0	0.00	15	4	21.05
CFB	0	genome.wustl.edu	37	6	31912622	31912622	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	6	31912622	31912622	C	A	SNP	CFB	ENST00000556679	human	ensembl	74_37	+1	known	missense	c.1562	p.P521H	0.979	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_VWF_A,pfam_Sushi_SCR_CCP,superfamily_Trypsin-like_Pept_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CFB	HGNC	ENSG00000243649	tier1	-	-	61	0	0.00	71	24	25.26
CFH	0	genome.wustl.edu	37	1	196706673	196706673	+	Nonsense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	196706673	196706673	G	T	SNP	CFH	ENST00000367429	human	ensembl	74_37	+1	known	nonsense	c.2665	p.E889*	0.706	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	tier1	-	-	40	0	0.00	39	4	9.30
CHRM4	0	genome.wustl.edu	37	11	46407375	46407375	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	11	46407375	46407375	G	A	SNP	CHRM4	ENST00000433765	human	ensembl	74_37	-1	known	missense	c.733	p.L245F	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_M4_rcpt	-	no_errors	CHRM4	HGNC	ENSG00000180720	tier1	-	-	76	0	0.00	76	9	10.59
CNTNAP2	0	genome.wustl.edu	37	7	147844591	147844591	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	7	147844591	147844591	G	C	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.2563	p.E855Q	0.993	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	tier1	-	-	44	0	0.00	58	8	12.12
CNTNAP3	0	genome.wustl.edu	37	9	39103809	39103809	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	9	39103809	39103809	G	C	SNP	CNTNAP3	ENST00000297668	human	ensembl	74_37	-1	known	missense	c.2468	p.T823S	0.998	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	tier1	-	-	83	0	0.00	88	9	9.28
COG7	0	genome.wustl.edu	37	16	23428334	23428334	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	16	23428334	23428334	G	T	SNP	COG7	ENST00000307149	human	ensembl	74_37	-1	known	missense	c.1246	p.L416M	1.000	pfam_COG7	pfam_COG7	-	no_errors	COG7	HGNC	ENSG00000168434				50	0	0.00	36	2	5.26
COL15A1	0	genome.wustl.edu	37	9	101784427	101784427	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	9	101784427	101784427	C	T	SNP	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	missense	c.1756	p.P586S	0.779	NULL	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291	tier1	-	-	71	0	0.00	51	17	25.00
COL16A1	0	genome.wustl.edu	37	1	32165447	32165447	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	32165447	32165447	C	T	SNP	COL16A1	ENST00000271069	human	ensembl	74_37	-1	known	missense	c.233	p.R78H	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636	tier1	-	-	57	0	0.00	50	14	21.88
COL4A2	0	genome.wustl.edu	37	13	111145564	111145564	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	13	111145564	111145564	C	T	SNP	COL4A2	ENST00000360467	human	ensembl	74_37	+1	known	missense	c.3569	p.P1190L	0.266	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871				46	0	0.00	45	3	6.25
COL7A1	0	genome.wustl.edu	37	3	48606262	48606262	+	Silent	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	3	48606262	48606262	C	T	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	silent	c.7713	p.K2571	0.997	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	tier1	-	-	124	0	0.00	94	20	17.54
CTNNAL1	0	genome.wustl.edu	37	9	111705299	111705299	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	9	111705299	111705299	C	G	SNP	CTNNAL1	ENST00000325551	human	ensembl	74_37	-1	known	missense	c.2081	p.R694T	1.000	superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	-	no_errors	CTNNAL1	HGNC	ENSG00000119326	tier1	-	-	36	0	0.00	23	4	14.81
CUBN	0	genome.wustl.edu	37	10	16945979	16945979	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	10	16945979	16945979	T	C	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.8048	p.K2683R	0.004	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	tier1	-	-	28	0	0.00	29	4	12.12
DCX	0	genome.wustl.edu	37	X	110576330	110576330	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	X	110576330	110576330	C	A	SNP	DCX	ENST00000338081	human	ensembl	74_37	-1	known	missense	c.1000	p.G334C	1.000	pfam_Doublecortin_dom,smart_Doublecortin_dom,pirsf_Doublecortin_chordata,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,smart_Doublecortin_dom,pirsf_Doublecortin_chordata,pfscan_Doublecortin_dom	-	no_errors	DCX	HGNC	ENSG00000077279	tier1	-	-	22	0	0.00	16	3	15.79
DNAJC7	0	genome.wustl.edu	37	17	40142298	40142298	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	17	40142298	40142298	C	T	SNP	DNAJC7	ENST00000457167	human	ensembl	74_37	-1	known	missense	c.583	p.A195T	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_TPR_repeat,smart_DnaJ_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC7	HGNC	ENSG00000168259	tier1	-	-	62	0	0.00	104	15	12.61
DRD5	0	genome.wustl.edu	37	4	9784946	9784946	+	Silent	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	4	9784946	9784946	G	A	SNP	DRD5	ENST00000304374	human	ensembl	74_37	+1	known	silent	c.1293	p.E431	0.063	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Dopamine_D5_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676	tier1	-	-	54	0	0.00	34	6	15.00
ELFN2	0	genome.wustl.edu	37	22	37769432	37769432	+	Silent	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	22	37769432	37769432	G	A	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	silent	c.2143	p.L715	0.998	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897	tier1	-	-	57	0	0.00	27	6	17.65
ELL2	0	genome.wustl.edu	37	5	95249513	95249513	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	5	95249513	95249513	C	T	SNP	ELL2	ENST00000237853	human	ensembl	74_37	-1	known	missense	c.443	p.R148Q	1.000	pfam_RNA_pol_II_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985	tier1	-	-	93	0	0.00	83	16	16.16
ELTD1	0	genome.wustl.edu	37	1	79411960	79411960	+	Silent	SNP	T	T	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	79411960	79411960	T	G	SNP	ELTD1	ENST00000370742	human	ensembl	74_37	-1	known	silent	c.324	p.I108	0.994	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	tier1	-	-	31	0	0.00	19	4	17.39
EMID1	0	genome.wustl.edu	37	22	29651307	29651307	+	Silent	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	22	29651307	29651307	C	A	SNP	EMID1	ENST00000404820	human	ensembl	74_37	+1	novel	silent	c.1167	p.L389	1.000	NULL	pfam_Collagen,pfam_EMI_domain,pfscan_EMI_domain	-	no_errors	EMID1	HGNC	ENSG00000186998	tier1	-	-	74	0	0.00	57	4	6.56
ENSG00000223579	0	genome.wustl.edu	37	22	20639062	20639062	+	RNA	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	22	20639062	20639062	G	A	SNP	ENSG00000223579	ENST00000577456	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.970	-	-	-	no_errors	AC011718.2	Clone_based_vega_gene	ENSG00000223579	tier1	-	-	43	0	0.00	21	13	38.24
ENSG00000224363	0	genome.wustl.edu	37	1	144090788	144090788	+	RNA	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	144090788	144090788	C	A	SNP	ENSG00000224363	ENST00000441760	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.850	-	-	-	no_errors	RP11-289H16.1	Clone_based_vega_gene	ENSG00000224363	tier1	-	-	31	0	0.00	28	4	12.50
ENSG00000258168	0	genome.wustl.edu	37	12	70932804	70932804	+	RNA	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	12	70932804	70932804	C	T	SNP	ENSG00000258168	ENST00000548687	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-588H23.3	Clone_based_vega_gene	ENSG00000258168	tier1	-	-	38	0	0.00	25	4	13.79
EPHB1	0	genome.wustl.edu	37	3	134881021	134881021	+	Silent	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	3	134881021	134881021	C	T	SNP	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	silent	c.1584	p.D528	0.674	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	tier1	-	-	40	0	0.00	35	8	18.60
EPHX2	0	genome.wustl.edu	37	8	27398991	27398991	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	8	27398991	27398991	G	A	SNP	EPHX2	ENST00000521400	human	ensembl	74_37	+1	known	missense	c.1381	p.G461S	0.998	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,pfam_HAD-like_dom,superfamily_HAD-like_dom,prints_Epox_hydrolase-like,prints_HAD-SF_hydro_IA,prints_AB_hydrolase_1,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	EPHX2	HGNC	ENSG00000120915	tier1	-	-	67	0	0.00	76	6	7.32
FAT4	0	genome.wustl.edu	37	4	126408710	126408710	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	4	126408710	126408710	A	G	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.13027	p.I4343V	0.837	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				20	0	0.00	20	2	9.09
FBN1	0	genome.wustl.edu	37	15	48779545	48779545	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	15	48779545	48779545	C	A	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.3427	p.G1143C	0.998	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	tier1	-	-	51	0	0.00	40	13	24.53
FIGLA	0	genome.wustl.edu	37	2	71014835	71014835	+	Silent	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	2	71014835	71014835	C	T	SNP	FIGLA	ENST00000332372	human	ensembl	74_37	-1	known	silent	c.330	p.A110	0.646	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	FIGLA	HGNC	ENSG00000183733	tier1	-	-	49	0	0.00	53	7	11.67
FRAS1	0	genome.wustl.edu	37	4	79345576	79345576	+	Splice_Site	SNP	T	T	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	4	79345576	79345576	T	C	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	splice_site	c.4711+2	e35+2	0.998	-	-	-	no_errors	FRAS1	HGNC	ENSG00000138759	tier1	-	-	34	0	0.00	27	9	25.00
FZD4	0	genome.wustl.edu	37	11	86662616	86662616	+	Silent	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	11	86662616	86662616	G	A	SNP	FZD4	ENST00000531380	human	ensembl	74_37	-1	known	silent	c.1182	p.P394	0.006	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD4	HGNC	ENSG00000174804	tier1	-	-	42	0	0.00	45	16	26.23
GLYCTK	0	genome.wustl.edu	37	3	52326740	52326740	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	3	52326740	52326740	G	T	SNP	GLYCTK	ENST00000436784	human	ensembl	74_37	+1	known	missense	c.1170	p.E390D	0.416	NULL	pfam_MOFRL	-	no_errors	GLYCTK	HGNC	ENSG00000168237				81	0	0.00	52	3	5.45
GNRH1	0	genome.wustl.edu	37	8	25279131	25279131	+	Silent	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	8	25279131	25279131	C	T	SNP	GNRH1	ENST00000276414	human	ensembl	74_37	-1	known	silent	c.195	p.T65	0.025	prints_Gonadoliberin_I_precursor	pfam_GnRH,prints_Gonadoliberin_I_precursor	-	no_errors	GNRH1	HGNC	ENSG00000147437	tier1	-	-	83	0	0.00	69	23	25.00
GRIPAP1	0	genome.wustl.edu	37	X	48854534	48854534	+	RNA	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	X	48854534	48854534	C	T	SNP	GRIPAP1	ENST00000480041	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	GRIPAP1	HGNC	ENSG00000068400	tier1	-	-	63	0	0.00	46	5	9.80
GRM5	0	genome.wustl.edu	37	11	88300675	88300675	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	11	88300675	88300675	T	A	SNP	GRM5	ENST00000305447	human	ensembl	74_37	-1	known	missense	c.2176	p.I726F	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C	-	no_errors	GRM5	HGNC	ENSG00000168959				68	0	0.00	55	4	6.78
IGSF3	0	genome.wustl.edu	37	1	117127484	117127484	+	Silent	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	117127484	117127484	G	A	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	silent	c.2691	p.H897	1.000	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061	tier1	-	-	58	0	0.00	46	9	16.36
INTS3	0	genome.wustl.edu	37	1	153746308	153746308	+	RNA	SNP	C	C	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	153746308	153746308	C	G	SNP	INTS3	ENST00000476843	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	INTS3	HGNC	ENSG00000143624	tier1	-	-	45	0	0.00	48	5	9.43
ITPRIP	0	genome.wustl.edu	37	10	106074541	106074541	+	Silent	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	10	106074541	106074541	G	A	SNP	ITPRIP	ENST00000278071	human	ensembl	74_37	-1	known	silent	c.1269	p.T423	0.914	NULL	NULL	-	no_errors	ITPRIP	HGNC	ENSG00000148841	tier1	-	-	34	0	0.00	30	5	14.29
KCNMA1	0	genome.wustl.edu	37	10	78704644	78704644	+	Missense_Mutation	SNP	T	T	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	10	78704644	78704644	T	G	SNP	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	missense	c.2801	p.Q934P	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113	tier1	-	-	82	0	0.00	60	9	13.04
KLHL26	0	genome.wustl.edu	37	19	18775251	18775251	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	19	18775251	18775251	C	A	SNP	KLHL26	ENST00000300976	human	ensembl	74_37	+1	known	missense	c.264	p.F88L	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL26	HGNC	ENSG00000167487				36	0	0.00	28	2	6.67
KRT23	0	genome.wustl.edu	37	17	39092782	39092782	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	17	39092782	39092782	G	C	SNP	KRT23	ENST00000209718	human	ensembl	74_37	-1	known	missense	c.74	p.P25R	0.001	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT23	HGNC	ENSG00000108244				31	0	0.00	30	5	14.29
KRT86	0	genome.wustl.edu	37	12	52695793	52695793	+	Silent	SNP	C	C	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	12	52695793	52695793	C	G	SNP	KRT86	ENST00000293525	human	ensembl	74_37	+1	known	silent	c.93	p.P31	1.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT86	HGNC	ENSG00000170442	tier1	-	-	52	0	0.00	46	8	14.81
LARS	0	genome.wustl.edu	37	5	145539938	145539938	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	5	145539938	145539938	G	A	SNP	LARS	ENST00000394434	human	ensembl	74_37	-1	known	missense	c.706	p.R236W	1.000	pfam_aa-tRNA-synth_Ia,tigrfam_Leu-tRNA-synth_Ia_arc/euk	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Cys-tRNA/MSH_ligase,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Leu-tRNA-synth_Ia_arc/euk	-	no_errors	LARS	HGNC	ENSG00000133706	tier1	-	-	52	0	0.00	55	4	6.78
LDHAL6CP	0	genome.wustl.edu	37	12	63397624	63397624	+	RNA	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	12	63397624	63397624	G	A	SNP	LDHAL6CP	ENST00000550738	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LDHAL6CP	HGNC	ENSG00000250517	tier1	-	-	77	0	0.00	63	24	27.59
LGALSL	0	genome.wustl.edu	37	2	64682498	64682498	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	2	64682498	64682498	A	T	SNP	LGALSL	ENST00000238875	human	ensembl	74_37	+1	known	missense	c.57	p.L19F	0.998	NULL	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALSL	HGNC	ENSG00000119862	tier1	-	-	71	0	0.00	66	4	5.71
LIFR	0	genome.wustl.edu	37	5	38502838	38502838	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	5	38502838	38502838	G	C	SNP	LIFR	ENST00000263409	human	ensembl	74_37	-1	known	missense	c.1501	p.P501A	0.997	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594				115	0	0.00	87	6	6.45
LIMA1	0	genome.wustl.edu	37	12	50571452	50571452	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	12	50571452	50571452	C	T	SNP	LIMA1	ENST00000394943	human	ensembl	74_37	-1	known	missense	c.1678	p.E560K	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405	tier1	-	-	41	0	0.00	42	6	12.50
LOC101927550	0	genome.wustl.edu	37	7	98611622	98611622	+	RNA	SNP	C	C	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	7	98611622	98611622	C	G	SNP	LOC101927550	ENST00000360902	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	AC004893.11	Clone_based_vega_gene	ENSG00000242687	tier1	-	-	20	0	0.00	29	6	17.14
LRFN2	0	genome.wustl.edu	37	6	40399901	40399901	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	6	40399901	40399901	G	A	SNP	LRFN2	ENST00000338305	human	ensembl	74_37	-1	known	missense	c.952	p.P318S	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN2	HGNC	ENSG00000156564	tier1	-	-	82	0	0.00	102	6	5.56
MCC	0	genome.wustl.edu	37	5	112389471	112389471	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	5	112389471	112389471	C	T	SNP	MCC	ENST00000302475	human	ensembl	74_37	-1	known	missense	c.1829	p.R610K	1.000	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444	tier1	-	-	42	0	0.00	34	5	12.82
MDGA2	0	genome.wustl.edu	37	14	47566228	47566228	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	14	47566228	47566228	G	T	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	missense	c.1024	p.P342T	0.998	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781				50	0	0.00	43	3	6.38
MFN1	0	genome.wustl.edu	37	3	179069813	179069813	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	3	179069813	179069813	T	A	SNP	MFN1	ENST00000263969	human	ensembl	74_37	+1	known	missense	c.238	p.F80I	0.999	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN1	HGNC	ENSG00000171109	tier1	-	-	79	0	0.00	60	10	14.29
MFN1	0	genome.wustl.edu	37	3	179069816	179069816	+	Missense_Mutation	SNP	T	T	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	3	179069816	179069816	T	G	SNP	MFN1	ENST00000263969	human	ensembl	74_37	+1	known	missense	c.241	p.F81V	1.000	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN1	HGNC	ENSG00000171109	tier1	-	-	79	0	0.00	59	9	13.24
MFN1	0	genome.wustl.edu	37	3	179107819	179107819	+	Silent	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	3	179107819	179107819	G	T	SNP	MFN1	ENST00000263969	human	ensembl	74_37	+1	known	silent	c.2040	p.L680	1.000	pfam_Fzo/mitofusin_HR2	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN1	HGNC	ENSG00000171109	tier1	-	-	29	0	0.00	51	10	16.39
MICAL3	0	genome.wustl.edu	37	22	18300174	18300174	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	22	18300174	18300174	C	G	SNP	MICAL3	ENST00000441493	human	ensembl	74_37	-1	known	missense	c.5253	p.K1751N	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156				43	0	0.00	47	4	7.84
MMP9	0	genome.wustl.edu	37	20	44639644	44639644	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	20	44639644	44639644	G	T	SNP	MMP9	ENST00000372330	human	ensembl	74_37	+1	known	missense	c.604	p.A202S	1.000	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP9	HGNC	ENSG00000100985				63	0	0.00	48	3	5.88
MSH4	0	genome.wustl.edu	37	1	76333264	76333264	+	Silent	SNP	T	T	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	76333264	76333264	T	C	SNP	MSH4	ENST00000263187	human	ensembl	74_37	+1	known	silent	c.1296	p.D432	0.995	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH4	HGNC	ENSG00000057468				48	0	0.00	55	5	8.33
MUC12	0	genome.wustl.edu	37	7	100612955	100612956	+	In_Frame_Ins	INS	-	-	CTG			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	7	100612955	100612956	-	CTG	INS	MUC12	ENST00000536621	human	ensembl	74_37	+1	known	in_frame_ins	c.52_53	p.19in_frame_insA	0.000:0.000	NULL	pfam_SEA_dom	-	no_errors	MUC12	HGNC	ENSG00000205277	tier1			35	0	0.00	27	5	15.62
MUC15	0	genome.wustl.edu	37	11	26586795	26586795	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	11	26586795	26586795	T	A	SNP	MUC15	ENST00000436318	human	ensembl	74_37	-1	known	missense	c.692	p.Y231F	0.034	NULL	NULL	-	no_errors	MUC15	HGNC	ENSG00000169550	tier1	-	-	131	0	0.00	115	18	13.53
MUC20	0	genome.wustl.edu	37	3	195453002	195453002	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	3	195453002	195453002	G	T	SNP	MUC20	ENST00000447234	human	ensembl	74_37	+1	known	missense	c.1528	p.V510L	0.000	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	tier1	-	-	122	0	0.00	137	9	6.16
MUC5AC	0	genome.wustl.edu	37	11	1216458	1216458	+	RNA	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	11	1216458	1216458	G	A	SNP	MUC5AC	ENST00000358378	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MUC5AC	HGNC	ENSG00000215182	tier1	-	-	28	0	0.00	21	7	25.00
NAT9	0	genome.wustl.edu	37	17	72767990	72767990	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	17	72767990	72767990	G	A	SNP	NAT9	ENST00000357814	human	ensembl	74_37	-1	known	missense	c.497	p.T166M	0.980	superfamily_Acyl_CoA_acyltransferase	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	-	no_errors	NAT9	HGNC	ENSG00000109065	tier1	rs148689395	-	39	0	0.00	59	5	7.81
NCAPH2	0	genome.wustl.edu	37	22	50960627	50960627	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	22	50960627	50960627	T	C	SNP	NCAPH2	ENST00000299821	human	ensembl	74_37	+1	known	missense	c.1180	p.W394R	1.000	pfam_Condensin_II_H2-like	pfam_Condensin_II_H2-like	-	no_errors	NCAPH2	HGNC	ENSG00000025770				44	0	0.00	38	3	7.32
NDUFB1	0	genome.wustl.edu	37	14	92587941	92587941	+	RNA	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	14	92587941	92587941	G	A	SNP	NDUFB1	ENST00000556555	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	NDUFB1	HGNC	ENSG00000183648	tier1	-	-	70	0	0.00	52	5	8.62
NINL	0	genome.wustl.edu	37	20	25472115	25472115	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	20	25472115	25472115	C	G	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	missense	c.1357	p.E453Q	0.992	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004	tier1	-	-	67	0	0.00	55	7	11.29
NLN	0	genome.wustl.edu	37	5	65084238	65084238	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	5	65084238	65084238	G	T	SNP	NLN	ENST00000380985	human	ensembl	74_37	+1	known	missense	c.1252	p.V418F	1.000	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_errors	NLN	HGNC	ENSG00000123213				53	0	0.00	55	4	6.78
NT5C3AP1	0	genome.wustl.edu	37	4	118497188	118497188	+	RNA	SNP	A	A	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	4	118497188	118497188	A	G	SNP	NT5C3AP1	ENST00000441170	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	NT5C3AP1	HGNC	ENSG00000213492	tier1	-	-	61	0	0.00	46	4	8.00
NUP93	0	genome.wustl.edu	37	16	56878425	56878425	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	16	56878425	56878425	A	G	SNP	NUP93	ENST00000569842	human	ensembl	74_37	+1	putative	missense	c.2482	p.S828G	1.000	NULL	pfam_Nucleoporin_int_Nup93/Nic96	-	no_errors	NUP93	HGNC	ENSG00000102900	tier1	-	-	171	0	0.00	111	33	22.92
OCLN	0	genome.wustl.edu	37	5	68809798	68809798	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	5	68809798	68809798	C	A	SNP	OCLN	ENST00000355237	human	ensembl	74_37	+1	known	missense	c.753	p.F251L	0.937	pfam_Marvel,pirsf_Occludin	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_Marvel,pirsf_Occludin,prints_Occludin	-	no_errors	OCLN	HGNC	ENSG00000197822	tier1	-	-	48	0	0.00	53	6	10.17
OR2A4	0	genome.wustl.edu	37	6	132022418	132022418	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	6	132022418	132022418	C	T	SNP	OR2A4	ENST00000315453	human	ensembl	74_37	-1	known	missense	c.124	p.G42R	0.099	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	OR2A4	HGNC	ENSG00000180658	tier1	-	-	60	0	0.00	52	8	13.33
OR2AG2	0	genome.wustl.edu	37	11	6789525	6789525	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	11	6789525	6789525	G	C	SNP	OR2AG2	ENST00000338569	human	ensembl	74_37	-1	known	missense	c.664	p.L222V	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AG2	HGNC	ENSG00000188124	tier1	-	-	82	0	0.00	79	12	13.19
OR51S1	0	genome.wustl.edu	37	11	4869959	4869959	+	Nonsense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	11	4869959	4869959	G	T	SNP	OR51S1	ENST00000322101	human	ensembl	74_37	-1	known	nonsense	c.480	p.C160*	0.019	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51S1	HGNC	ENSG00000176922				63	0	0.00	54	3	5.26
OR5AN1	0	genome.wustl.edu	37	11	59132150	59132150	+	Nonsense_Mutation	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	11	59132150	59132150	C	A	SNP	OR5AN1	ENST00000313940	human	ensembl	74_37	+1	known	nonsense	c.219	p.C73*	0.846	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AN1	HGNC	ENSG00000176495	tier1	-	-	63	0	0.00	47	14	22.95
OR6K3	0	genome.wustl.edu	37	1	158687131	158687131	+	Silent	SNP	A	A	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	158687131	158687131	A	G	SNP	OR6K3	ENST00000368146	human	ensembl	74_37	-1	known	silent	c.823	p.L275	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K3	HGNC	ENSG00000203757	tier1	-	-	54	0	0.00	36	11	23.40
OR8K1	0	genome.wustl.edu	37	11	56113842	56113842	+	Missense_Mutation	SNP	T	T	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	11	56113842	56113842	T	G	SNP	OR8K1	ENST00000279783	human	ensembl	74_37	+1	known	missense	c.328	p.F110V	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8K1	HGNC	ENSG00000150261	tier1	-	-	37	0	0.00	35	5	12.50
PAX1	0	genome.wustl.edu	37	20	21687380	21687380	+	Silent	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	20	21687380	21687380	C	T	SNP	PAX1	ENST00000398485	human	ensembl	74_37	+1	known	silent	c.591	p.R197	0.988	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX1	HGNC	ENSG00000125813	tier1	-	-	93	0	0.00	83	11	11.70
PDCD2L	0	genome.wustl.edu	37	19	34900093	34900093	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	19	34900093	34900093	G	T	SNP	PDCD2L	ENST00000246535	human	ensembl	74_37	+1	known	missense	c.364	p.D122Y	0.912	NULL	pfam_PDCD2_C	-	no_errors	PDCD2L	HGNC	ENSG00000126249				31	0	0.00	40	3	6.98
PLCB4	0	genome.wustl.edu	37	20	9389320	9389320	+	Silent	SNP	A	A	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	20	9389320	9389320	A	T	SNP	PLCB4	ENST00000334005	human	ensembl	74_37	+1	known	silent	c.1794	p.S598	0.118	pirsf_PLC-beta,pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	tier1	-	-	78	0	0.00	86	30	25.86
PLCE1	0	genome.wustl.edu	37	10	95892064	95892064	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	10	95892064	95892064	G	T	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	missense	c.1340	p.R447L	0.006	superfamily_Ras_GEF_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				52	0	0.00	48	3	5.88
POLR2A	0	genome.wustl.edu	37	17	7415274	7415274	+	Nonsense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	17	7415274	7415274	C	T	SNP	POLR2A	ENST00000322644	human	ensembl	74_37	+1	known	nonsense	c.4246	p.R1416*	0.992	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222	tier1	-	-	92	0	0.00	57	14	19.72
POLR3B	0	genome.wustl.edu	37	12	106831541	106831541	+	Nonsense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	12	106831541	106831541	G	T	SNP	POLR3B	ENST00000228347	human	ensembl	74_37	+1	known	nonsense	c.1939	p.E647*	1.000	pfam_RNA_pol_Rpb2_5	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR3B	HGNC	ENSG00000013503				26	0	0.00	27	2	6.90
PPIL4	0	genome.wustl.edu	37	6	149847891	149847891	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	6	149847891	149847891	C	A	SNP	PPIL4	ENST00000253329	human	ensembl	74_37	-1	known	missense	c.700	p.D234Y	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,pfam_RRM_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL4	HGNC	ENSG00000131013				30	0	0.00	45	3	6.25
PPP1R12B	0	genome.wustl.edu	37	1	202407190	202407190	+	Frame_Shift_Del	DEL	T	T	-			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	202407190	202407190	T	-	DEL	PPP1R12B	ENST00000480184	human	ensembl	74_37	+1	novel	frame_shift_del	c.1496	p.F502fs	0.041	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PPP1R12B	HGNC	ENSG00000077157	tier1			23	0	0.00	10	4	28.57
PTPRT	0	genome.wustl.edu	37	20	41385155	41385155	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	20	41385155	41385155	A	G	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.806	p.I269T	1.000	pfscan_Ig-like_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	tier1	-	-	64	0	0.00	70	7	9.09
R3HDM1	0	genome.wustl.edu	37	2	136393551	136393551	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	2	136393551	136393551	G	C	SNP	R3HDM1	ENST00000264160	human	ensembl	74_37	+1	known	missense	c.790	p.D264H	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM1	HGNC	ENSG00000048991	tier1	-	-	49	0	0.00	55	4	6.78
RNF17	0	genome.wustl.edu	37	13	25442743	25442743	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	13	25442743	25442743	G	C	SNP	RNF17	ENST00000255324	human	ensembl	74_37	+1	known	missense	c.4167	p.L1389F	0.999	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972	tier1	-	-	77	0	0.00	61	15	19.74
RNF187	0	genome.wustl.edu	37	1	228680819	228680819	+	Silent	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	228680819	228680819	G	T	SNP	RNF187	ENST00000305943	human	ensembl	74_37	+1	known	silent	c.222	p.V74	0.007	NULL	NULL	-	no_errors	RNF187	HGNC	ENSG00000168159				55	0	0.00	45	3	6.25
RNPC3	0	genome.wustl.edu	37	1	104076467	104076467	+	Frame_Shift_Del	DEL	A	A	-			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	104076467	104076467	A	-	DEL	RNPC3	ENST00000423855	human	ensembl	74_37	+1	known	frame_shift_del	c.347	p.K119fs	0.784	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RNPC3	HGNC	ENSG00000185946	tier1			18	0	0.00	21	5	19.23
RPL26L1	0	genome.wustl.edu	37	5	172396449	172396449	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	5	172396449	172396449	C	T	SNP	RPL26L1	ENST00000265100	human	ensembl	74_37	+1	known	missense	c.343	p.R115W	0.996	superfamily_Translation_prot_SH3-like,tigrfam_Ribosomal_L26/L24P_euk/arc	pfam_KOW,superfamily_Translation_prot_SH3-like,smart_KOW,tigrfam_Ribosomal_L26/L24P_euk/arc	-	no_errors	RPL26L1	HGNC	ENSG00000037241	tier1	-	-	87	0	0.00	73	10	11.90
RTCB	0	genome.wustl.edu	37	22	32788229	32788229	+	Nonsense_Mutation	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	22	32788229	32788229	C	A	SNP	RTCB	ENST00000216038	human	ensembl	74_37	-1	known	nonsense	c.1408	p.E470*	1.000	pfam_RtcB,superfamily_RtcB	pfam_RtcB,superfamily_RtcB	-	no_errors	RTCB	HGNC	ENSG00000100220				45	0	0.00	27	2	6.90
RUNX2	0	genome.wustl.edu	37	6	45399659	45399659	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	6	45399659	45399659	T	A	SNP	RUNX2	ENST00000352853	human	ensembl	74_37	+1	known	missense	c.687	p.D229E	1.000	pfam_Runt_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813	tier1	-	-	104	0	0.00	98	12	10.91
SCG2	0	genome.wustl.edu	37	2	224463860	224463860	+	Silent	SNP	G	G	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	2	224463860	224463860	G	C	SNP	SCG2	ENST00000305409	human	ensembl	74_37	-1	known	silent	c.141	p.V47	0.381	pfam_Granin	pfam_Granin	-	no_errors	SCG2	HGNC	ENSG00000171951	tier1	-	-	37	0	0.00	32	6	15.79
SCN2A	0	genome.wustl.edu	37	2	166167085	166167085	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	2	166167085	166167085	A	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.950	p.D317V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				57	0	0.00	42	3	6.67
SCN5A	0	genome.wustl.edu	37	3	38603969	38603969	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	3	38603969	38603969	C	G	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.3900	p.K1300N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	tier1	-	-	62	0	0.00	51	7	12.07
SERINC3	0	genome.wustl.edu	37	20	43142627	43142627	+	Missense_Mutation	SNP	T	T	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	20	43142627	43142627	T	G	SNP	SERINC3	ENST00000255175	human	ensembl	74_37	-1	known	missense	c.94	p.S32R	0.002	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC3	HGNC	ENSG00000132824	tier1	-	-	58	0	0.00	68	6	8.11
SLC1A3	0	genome.wustl.edu	37	5	36686224	36686224	+	Silent	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	5	36686224	36686224	G	T	SNP	SLC1A3	ENST00000265113	human	ensembl	74_37	+1	known	silent	c.1482	p.V494	0.001	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A3	HGNC	ENSG00000079215	tier1	-	-	46	0	0.00	51	4	7.27
SLC44A4	0	genome.wustl.edu	37	6	31832357	31832357	+	RNA	DEL	A	A	-			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	6	31832357	31832357	A	-	DEL	SLC44A4	ENST00000487680	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.055	-	-	-	no_errors	SLC44A4	HGNC	ENSG00000204385	tier1			14	0	0.00	30	5	14.29
SLC4A11	0	genome.wustl.edu	37	20	3208438	3208438	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	20	3208438	3208438	G	A	SNP	SLC4A11	ENST00000380059	human	ensembl	74_37	-1	known	missense	c.2752	p.P918S	0.032	NULL	pfam_HCO3_transpt_C,pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836	tier1	-	-	48	0	0.00	57	20	25.97
SLC6A4	0	genome.wustl.edu	37	17	28548752	28548752	+	Silent	SNP	A	A	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	17	28548752	28548752	A	G	SNP	SLC6A4	ENST00000261707	human	ensembl	74_37	-1	known	silent	c.225	p.H75	0.119	NULL	pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N	-	no_errors	SLC6A4	HGNC	ENSG00000108576	tier1	-	-	123	0	0.00	110	41	27.15
SLITRK1	0	genome.wustl.edu	37	13	84454666	84454666	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	13	84454666	84454666	G	T	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	missense	c.977	p.A326E	0.842	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				33	0	0.00	27	2	6.90
SNTA1	0	genome.wustl.edu	37	20	32005636	32005636	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	20	32005636	32005636	C	T	SNP	SNTA1	ENST00000217381	human	ensembl	74_37	-1	known	missense	c.590	p.R197Q	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PDZ,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTA1	HGNC	ENSG00000101400	tier1	-	-	33	0	0.00	23	34	59.65
SPDYE3	0	genome.wustl.edu	37	7	99917283	99917283	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	7	99917283	99917283	G	A	SNP	SPDYE3	ENST00000332397	human	ensembl	74_37	+1	known	missense	c.1442	p.R481H	0.000	pfam_Cell_cycle_regulatory_Spy1	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE3	HGNC	ENSG00000214300	tier1	-	-	263	0	0.00	173	97	35.66
SPTAN1	0	genome.wustl.edu	37	9	131337616	131337616	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	9	131337616	131337616	C	G	SNP	SPTAN1	ENST00000358161	human	ensembl	74_37	+1	known	missense	c.643	p.L215V	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694	tier1	-	-	56	0	0.00	59	8	11.94
SPTB	0	genome.wustl.edu	37	14	65230544	65230544	+	RNA	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	14	65230544	65230544	G	T	SNP	SPTB	ENST00000342835	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPTB	HGNC	ENSG00000070182	tier1	-	-	118	0	0.00	71	7	8.97
ST6GAL1	0	genome.wustl.edu	37	3	186769080	186769080	+	Silent	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	3	186769080	186769080	C	A	SNP	ST6GAL1	ENST00000169298	human	ensembl	74_37	+1	known	silent	c.651	p.A217	0.423	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GAL1	HGNC	ENSG00000073849	tier1	-	-	83	0	0.00	72	6	7.69
SYNE1	0	genome.wustl.edu	37	6	152472809	152472809	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	6	152472809	152472809	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.24329	p.R8110H	1.000	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	tier1	-	-	34	0	0.00	34	4	10.53
SYT17	0	genome.wustl.edu	37	16	19234436	19234436	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	16	19234436	19234436	G	C	SNP	SYT17	ENST00000355377	human	ensembl	74_37	+1	known	missense	c.1021	p.D341H	0.996	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT17	HGNC	ENSG00000103528	tier1	-	-	114	0	0.00	80	17	17.53
TAF1A	0	genome.wustl.edu	37	1	222732053	222732054	+	Frame_Shift_Ins	INS	-	-	TTAA			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	222732053	222732054	-	TTAA	INS	TAF1A	ENST00000350027	human	ensembl	74_37	-1	known	frame_shift_ins	c.1302_1301	p.K434fs	0.980:0.984	pirsf_RNA_pol_I_TAF1A/TAFI48	pirsf_RNA_pol_I_TAF1A/TAFI48	-	no_errors	TAF1A	HGNC	ENSG00000143498	tier1			35	0	0.00	29	2	6.45
TCF7	0	genome.wustl.edu	37	5	133473773	133473773	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	5	133473773	133473773	C	T	SNP	TCF7	ENST00000517741	human	ensembl	74_37	+1	known	missense	c.173	p.T58M	0.092	NULL	NULL	-	no_errors	TCF7	HGNC	ENSG00000081059	tier1	-	-	55	0	0.00	51	6	10.53
TECPR1	0	genome.wustl.edu	37	7	97847352	97847352	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	7	97847352	97847352	T	C	SNP	TECPR1	ENST00000379795	human	ensembl	74_37	-1	known	missense	c.3166	p.N1056D	0.998	pfam_Beta-propeller_rpt_TECPR,superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR	pfam_Beta-propeller_rpt_TECPR,superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR,smart_Peroxin/Ferlin	-	no_errors	TECPR1	HGNC	ENSG00000205356				30	0	0.00	20	2	9.09
TM4SF20	0	genome.wustl.edu	37	2	228243873	228243873	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	2	228243873	228243873	C	A	SNP	TM4SF20	ENST00000304568	human	ensembl	74_37	-1	known	missense	c.112	p.D38Y	0.003	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF20	HGNC	ENSG00000168955				31	0	0.00	32	3	8.57
TMC6	0	genome.wustl.edu	37	17	76120758	76120758	+	Silent	SNP	G	G	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	17	76120758	76120758	G	C	SNP	TMC6	ENST00000322914	human	ensembl	74_37	-1	known	silent	c.738	p.L246	1.000	NULL	pfam_TMC	-	no_errors	TMC6	HGNC	ENSG00000141524	tier1	-	-	42	0	0.00	38	5	11.63
TMEM106C	0	genome.wustl.edu	37	12	48361947	48361947	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	12	48361947	48361947	A	G	SNP	TMEM106C	ENST00000429772	human	ensembl	74_37	+1	known	missense	c.688	p.M230V	0.013	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_errors	TMEM106C	HGNC	ENSG00000134291	tier1	-	-	20	0	0.00	24	6	20.00
TMPRSS4	0	genome.wustl.edu	37	11	117988062	117988062	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	11	117988062	117988062	C	T	SNP	TMPRSS4	ENST00000437212	human	ensembl	74_37	+1	known	missense	c.1195	p.H399Y	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS4	HGNC	ENSG00000137648	tier1	-	-	55	0	0.00	36	22	37.93
TP53TG1	0	genome.wustl.edu	37	7	86974747	86974747	+	RNA	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	7	86974747	86974747	G	T	SNP	TP53TG1	ENST00000359941	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TP53TG1	HGNC	ENSG00000182165				40	0	0.00	30	3	9.09
TP53TG1	0	genome.wustl.edu	37	7	86974782	86974782	+	RNA	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	7	86974782	86974782	G	A	SNP	TP53TG1	ENST00000359941	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TP53TG1	HGNC	ENSG00000182165				30	0	0.00	24	3	11.11
TRAF1	0	genome.wustl.edu	37	9	123667461	123667461	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	9	123667461	123667461	C	T	SNP	TRAF1	ENST00000373887	human	ensembl	74_37	-1	known	missense	c.1088	p.R363Q	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	-	no_errors	TRAF1	HGNC	ENSG00000056558	tier1	-	-	39	0	0.00	24	5	17.24
TRANK1	0	genome.wustl.edu	37	3	36931320	36931320	+	Nonsense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	3	36931320	36931320	G	A	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	nonsense	c.775	p.R259*	0.996	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	tier1	-	-	51	0	0.00	35	11	23.91
TRIM11	0	genome.wustl.edu	37	1	228584497	228584497	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	228584497	228584497	T	A	SNP	TRIM11	ENST00000366699	human	ensembl	74_37	-1	known	missense	c.1010	p.H337L	0.000	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM11	HGNC	ENSG00000154370	tier1	-	-	68	0	0.00	54	4	6.78
TRIM4	0	genome.wustl.edu	37	7	99506320	99506320	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	7	99506320	99506320	G	A	SNP	TRIM4	ENST00000355947	human	ensembl	74_37	-1	known	missense	c.683	p.T228M	0.052	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM4	HGNC	ENSG00000146833	tier1	-	-	76	0	0.00	83	8	8.79
TRIM46	0	genome.wustl.edu	37	1	155150650	155150650	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	1	155150650	155150650	G	T	SNP	TRIM46	ENST00000334634	human	ensembl	74_37	+1	known	missense	c.1082	p.G361V	0.999	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462				54	0	0.00	49	3	5.77
TRPM5	0	genome.wustl.edu	37	11	2426270	2426270	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	11	2426270	2426270	G	C	SNP	TRPM5	ENST00000452833	human	ensembl	74_37	-1	known	missense	c.3401	p.S1134C	0.005	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985	tier1	-	-	123	0	0.00	116	11	8.66
UBR2	0	genome.wustl.edu	37	6	42657384	42657384	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	6	42657384	42657384	A	G	SNP	UBR2	ENST00000372899	human	ensembl	74_37	+1	known	missense	c.5102	p.Y1701C	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	tier1	-	-	66	0	0.00	80	5	5.88
VCPIP1	0	genome.wustl.edu	37	8	67576874	67576874	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	8	67576874	67576874	C	G	SNP	VCPIP1	ENST00000310421	human	ensembl	74_37	-1	known	missense	c.2320	p.E774Q	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073				71	0	0.00	48	3	5.88
VEZF1	0	genome.wustl.edu	37	17	56056642	56056642	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	17	56056642	56056642	G	T	SNP	VEZF1	ENST00000581208	human	ensembl	74_37	-1	known	missense	c.1009	p.Q337K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	VEZF1	HGNC	ENSG00000136451				54	0	0.00	76	7	8.43
WDR52	0	genome.wustl.edu	37	3	113125833	113125833	+	Nonsense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	3	113125833	113125833	G	A	SNP	WDR52	ENST00000393845	human	ensembl	74_37	-1	known	nonsense	c.946	p.R316*	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530	tier1	-	-	76	0	0.00	77	9	10.47
WDR81	0	genome.wustl.edu	37	17	1631464	1631464	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	17	1631464	1631464	G	T	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	missense	c.3211	p.V1071F	0.990	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				42	0	0.00	34	3	8.11
ZAP70	0	genome.wustl.edu	37	2	98349436	98349436	+	Silent	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	2	98349436	98349436	G	A	SNP	ZAP70	ENST00000264972	human	ensembl	74_37	+1	known	silent	c.654	p.A218	0.017	pfam_SH2,smart_SH2,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ZAP70	HGNC	ENSG00000115085	tier1	rs202191985	-	74	0	0.00	78	22	21.78
ZHX1	0	genome.wustl.edu	37	8	124266852	124266852	+	Silent	SNP	T	T	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	8	124266852	124266852	T	A	SNP	ZHX1	ENST00000297857	human	ensembl	74_37	-1	known	silent	c.1335	p.A445	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZHX1	HGNC	ENSG00000165156	tier1	-	-	41	0	0.00	36	15	29.41
ZNF174	0	genome.wustl.edu	37	16	3452111	3452111	+	Frame_Shift_Del	DEL	A	A	-			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	16	3452111	3452111	A	-	DEL	ZNF174	ENST00000268655	human	ensembl	74_37	+1	known	frame_shift_del	c.107	p.N38fs	0.000	superfamily_Retrov_capsid_C	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF174	HGNC	ENSG00000103343	tier1			59	0	0.00	38	2	5.00
ZNF20	0	genome.wustl.edu	37	19	12243540	12243540	+	Silent	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	19	12243540	12243540	G	A	SNP	ZNF20	ENST00000334213	human	ensembl	74_37	-1	known	silent	c.1461	p.A487	0.013	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF20	HGNC	ENSG00000132010	tier1	-	-	79	0	0.00	46	8	14.81
ZNF207	0	genome.wustl.edu	37	17	30696347	30696347	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	17	30696347	30696347	C	T	SNP	ZNF207	ENST00000394670	human	ensembl	74_37	+1	known	missense	c.1198	p.R400C	1.000	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF207	HGNC	ENSG00000010244	tier1	-	-	50	0	0.00	50	12	19.35
ZNF208	0	genome.wustl.edu	37	19	22154882	22154882	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	19	22154882	22154882	A	G	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.2954	p.F985S	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				43	0	0.00	30	2	6.25
ZNF485	0	genome.wustl.edu	37	10	44112612	44112612	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	10	44112612	44112612	G	A	SNP	ZNF485	ENST00000361807	human	ensembl	74_37	+1	known	missense	c.1121	p.R374K	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF485	HGNC	ENSG00000198298	tier1	-	-	32	0	0.00	34	6	15.00
ZNF613	0	genome.wustl.edu	37	19	52448537	52448537	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	19	52448537	52448537	C	A	SNP	ZNF613	ENST00000293471	human	ensembl	74_37	+1	known	missense	c.1401	p.H467Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024				53	0	0.00	36	2	5.26
ZNF704	0	genome.wustl.edu	37	8	81550825	81550825	+	RNA	DEL	A	A	-			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	8	81550825	81550825	A	-	DEL	ZNF704	ENST00000517379	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF704	HGNC	ENSG00000164684	tier1			15	0	0.00	19	3	13.64
ZNF808	0	genome.wustl.edu	37	19	53056935	53056935	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A4OS-01A-11D-A28B-09	TCGA-L5-A4OS-11A-11D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e119c5d2-fdd0-4a8a-a6ce-3c68f3dbca52	ecbcc636-eb77-4e8b-8759-082bec11dc34	19	53056935	53056935	G	C	SNP	ZNF808	ENST00000359798	human	ensembl	74_37	+1	known	missense	c.766	p.D256H	0.952	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF808	HGNC	ENSG00000198482	tier1	-	-	127	0	0.00	102	8	7.27
