Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ACADS	0	genome.wustl.edu	37	12	121176660	121176660	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	121176660	121176660	C	T	SNP	ACADS	ENST00000242592	human	ensembl	74_37	+1	known	missense	c.971	p.A324V	1.000	pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADS	HGNC	ENSG00000122971				77	0	0.00	56	4	6.67
ACOT11	0	genome.wustl.edu	37	1	55070051	55070051	+	Silent	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	55070051	55070051	G	A	SNP	ACOT11	ENST00000371316	human	ensembl	74_37	+1	known	silent	c.1185	p.L395	1.000	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom	pfam_START_lipid-bd_dom,pfam_Thioestr_supf,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	ACOT11	HGNC	ENSG00000162390	tier1	-	-	60	0	0.00	32	11	25.58
ADAM32	0	genome.wustl.edu	37	8	39103684	39103684	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	8	39103684	39103684	G	T	SNP	ADAM32	ENST00000379907	human	ensembl	74_37	+1	known	missense	c.1901	p.G634V	0.998	pfscan_EG-like_dom	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM32	HGNC	ENSG00000197140	tier1	-	-	44	0	0.00	50	4	7.41
ADAMTS12	0	genome.wustl.edu	37	5	33588775	33588775	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	33588775	33588775	G	T	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.2794	p.P932T	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	tier1	-	-	53	0	0.00	39	4	9.30
ADAMTS16	0	genome.wustl.edu	37	5	5232548	5232548	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	5232548	5232548	C	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.1769	p.S590L	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	tier1	-	-	66	0	0.00	49	11	18.33
ADAMTS2	0	genome.wustl.edu	37	5	178634684	178634684	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	178634684	178634684	G	A	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	missense	c.721	p.R241C	0.470	prints_Pept_M12B_ADAM-TS2	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116	tier1	rs140045997	-	91	0	0.00	60	22	26.83
ADH6	0	genome.wustl.edu	37	4	100130052	100130052	+	Silent	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	4	100130052	100130052	G	A	SNP	ADH6	ENST00000394899	human	ensembl	74_37	-1	known	silent	c.601	p.L201	1.000	smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH6	HGNC	ENSG00000172955				26	0	0.00	36	2	5.26
ADRBK2	0	genome.wustl.edu	37	22	26070486	26070486	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	22	26070486	26070486	C	T	SNP	ADRBK2	ENST00000324198	human	ensembl	74_37	+1	known	missense	c.638	p.T213I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK2	HGNC	ENSG00000100077	tier1	-	-	91	0	0.00	71	4	5.33
AGBL1	0	genome.wustl.edu	37	15	87089267	87089267	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	87089267	87089267	A	G	SNP	AGBL1	ENST00000441037	human	ensembl	74_37	+1	known	missense	c.2582	p.K861R	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	tier1	-	-	64	0	0.00	40	14	25.93
AKAP3	0	genome.wustl.edu	37	12	4736244	4736244	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	4736244	4736244	C	T	SNP	AKAP3	ENST00000228850	human	ensembl	74_37	-1	known	silent	c.1824	p.K608	0.762	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP3	HGNC	ENSG00000111254				40	0	0.00	34	2	5.56
AMBRA1	0	genome.wustl.edu	37	11	46515709	46515709	+	Silent	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	46515709	46515709	C	A	SNP	AMBRA1	ENST00000458649	human	ensembl	74_37	-1	known	silent	c.2385	p.R795	0.874	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	tier1	-	-	40	0	0.00	35	5	12.50
AMOT	0	genome.wustl.edu	37	X	112058796	112058796	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	X	112058796	112058796	C	T	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	silent	c.1182	p.Q394	0.970	NULL	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016				34	0	0.00	24	3	11.11
ANKRD30A	0	genome.wustl.edu	37	10	37430816	37430816	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	10	37430816	37430816	T	A	SNP	ANKRD30A	ENST00000361713	human	ensembl	74_37	+1	known	missense	c.823	p.L275M	0.003	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	tier1	-	-	139	0	0.00	118	10	7.81
ANKRD50	0	genome.wustl.edu	37	4	125590831	125590831	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	4	125590831	125590831	C	T	SNP	ANKRD50	ENST00000504087	human	ensembl	74_37	-1	known	missense	c.3601	p.A1201T	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD50	HGNC	ENSG00000151458				39	0	0.00	37	2	5.13
ANKRD54	0	genome.wustl.edu	37	22	38227856	38227856	+	RNA	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	22	38227856	38227856	C	T	SNP	ANKRD54	ENST00000498417	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANKRD54	HGNC	ENSG00000100124	tier1	-	-	33	0	0.00	40	4	9.09
ANKS1B	0	genome.wustl.edu	37	12	99640518	99640518	+	Silent	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	99640518	99640518	C	A	SNP	ANKS1B	ENST00000329257	human	ensembl	74_37	-1	known	silent	c.1881	p.G627	0.997	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046	tier1	-	-	45	0	0.00	34	8	19.05
AP2A2	0	genome.wustl.edu	37	11	994158	994158	+	Silent	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	994158	994158	G	A	SNP	AP2A2	ENST00000332231	human	ensembl	74_37	+1	known	silent	c.1872	p.T624	0.083	pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A2	HGNC	ENSG00000183020				54	0	0.00	40	4	9.09
APOA4	0	genome.wustl.edu	37	11	116692293	116692293	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	116692293	116692293	C	T	SNP	APOA4	ENST00000357780	human	ensembl	74_37	-1	known	missense	c.481	p.A161T	0.001	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA4	HGNC	ENSG00000110244				15	0	0.00	22	3	12.00
APOB	0	genome.wustl.edu	37	2	21239325	21239325	+	Silent	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	21239325	21239325	G	T	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	silent	c.3318	p.L1106	0.043	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				31	0	0.00	42	4	8.70
APOBEC3G	0	genome.wustl.edu	37	22	39477202	39477202	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	22	39477202	39477202	C	T	SNP	APOBEC3G	ENST00000407997	human	ensembl	74_37	+1	known	missense	c.436	p.R146C	0.000	pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3G	HGNC	ENSG00000239713	tier1	rs200526446	-	70	0	0.00	31	8	20.51
ARHGAP9	0	genome.wustl.edu	37	12	57869649	57869649	+	Nonsense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	57869649	57869649	C	T	SNP	ARHGAP9	ENST00000356411	human	ensembl	74_37	-1	known	nonsense	c.1278	p.W426*	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP9	HGNC	ENSG00000123329				87	0	0.00	74	4	5.13
ARHGEF15	0	genome.wustl.edu	37	17	8215791	8215791	+	Nonsense_Mutation	SNP	C	C	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	17	8215791	8215791	C	G	SNP	ARHGEF15	ENST00000361926	human	ensembl	74_37	+1	known	nonsense	c.434	p.S145*	0.931	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844	tier1	-	-	125	0	0.00	62	14	18.42
ARID1A	0	genome.wustl.edu	37	1	27087417	27087417	+	Frame_Shift_Del	DEL	C	C	-			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	27087417	27087417	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.1991	p.S664fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	tier1			49	0	0.00	34	14	29.17
ASPDH	0	genome.wustl.edu	37	19	51016575	51016575	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	51016575	51016575	C	T	SNP	ASPDH	ENST00000389208	human	ensembl	74_37	-1	known	missense	c.151	p.V51M	0.764	pfam_Asp/hSer_DH_NAD-bd	pfam_Asp_DH,pfam_Asp/hSer_DH_NAD-bd	-	no_errors	ASPDH	HGNC	ENSG00000204653	tier1	-	-	67	0	0.00	47	4	7.84
ATM	0	genome.wustl.edu	37	11	108143528	108143528	+	Missense_Mutation	SNP	T	T	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	108143528	108143528	T	G	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.3233	p.L1078R	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	tier1	-	-	50	0	0.00	34	6	15.00
ATP8B1	0	genome.wustl.edu	37	18	55334367	55334367	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	18	55334367	55334367	G	T	SNP	ATP8B1	ENST00000283684	human	ensembl	74_37	-1	known	missense	c.2242	p.L748I	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B1	HGNC	ENSG00000081923	tier1	-	-	47	0	0.00	21	3	12.50
ATP8B2	0	genome.wustl.edu	37	1	154307045	154307045	+	Missense_Mutation	SNP	T	T	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	154307045	154307045	T	G	SNP	ATP8B2	ENST00000368489	human	ensembl	74_37	+1	known	missense	c.914	p.L305R	0.997	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B2	HGNC	ENSG00000143515	tier1	-	-	25	0	0.00	18	5	21.74
ATP9B	0	genome.wustl.edu	37	18	76936828	76936828	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	18	76936828	76936828	G	A	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	missense	c.794	p.R265Q	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				32	0	0.00	25	2	7.41
ATPAF1	0	genome.wustl.edu	37	1	47110925	47110925	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	47110925	47110925	G	C	SNP	ATPAF1	ENST00000576409	human	ensembl	74_37	-1	known	missense	c.661	p.L221V	1.000	pfam_ATP11	pfam_ATP11	-	no_errors	ATPAF1	HGNC	ENSG00000123472	tier1	-	-	23	0	0.00	25	7	21.88
ATRX	0	genome.wustl.edu	37	X	76920219	76920219	+	Silent	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	X	76920219	76920219	A	G	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	silent	c.3858	p.S1286	0.991	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	32	0	0.00	23	3	11.54
BAI3	0	genome.wustl.edu	37	6	69349111	69349111	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	69349111	69349111	G	C	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.544	p.E182Q	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				32	0	0.00	29	2	6.45
BRINP1	0	genome.wustl.edu	37	9	121929790	121929790	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	9	121929790	121929790	G	A	SNP	BRINP1	ENST00000265922	human	ensembl	74_37	-1	known	missense	c.1858	p.R620C	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP1	HGNC	ENSG00000078725	tier1	-	-	44	0	0.00	27	7	20.59
BRINP2	0	genome.wustl.edu	37	1	177250184	177250184	+	Nonsense_Mutation	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	177250184	177250184	C	A	SNP	BRINP2	ENST00000361539	human	ensembl	74_37	+1	known	nonsense	c.1872	p.C624*	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP2	HGNC	ENSG00000198797	tier1	-	-	46	0	0.00	23	12	34.29
C2	0	genome.wustl.edu	37	6	31896637	31896637	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	31896637	31896637	C	T	SNP	C2	ENST00000299367	human	ensembl	74_37	+1	known	missense	c.385	p.R129C	0.631	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pirsf_Compl_C2_B,pfscan_Sushi_SCR_CCP	pfam_VWF_A,pfam_Peptidase_S1,pfam_Sushi_SCR_CCP,superfamily_Trypsin-like_Pept_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1,pirsf_Compl_C2_B,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	C2	HGNC	ENSG00000166278	tier1	-	-	35	0	0.00	55	4	6.78
C7orf34	0	genome.wustl.edu	37	7	142636712	142636712	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	142636712	142636712	C	T	SNP	C7orf34	ENST00000409607	human	ensembl	74_37	+1	known	silent	c.69	p.G23	0.531	NULL	NULL	-	no_errors	C7orf34	HGNC	ENSG00000165131				23	0	0.00	32	4	11.11
C7orf55-LUC7L2	0	genome.wustl.edu	37	7	139045070	139045071	+	Splice_Site	INS	-	-	AA			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	139045070	139045071	-	AA	INS	C7orf55-LUC7L2	ENST00000354926	human	ensembl	74_37	+1	known	splice_site_ins	c.61+2_61+1	e1+2	1.000:1.000	-	-	-	no_errors	C7orf55-LUC7L2	HGNC	ENSG00000146963	tier1			23	0	0.00	29	6	17.14
CACNA1H	0	genome.wustl.edu	37	16	1250520	1250520	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	16	1250520	1250520	C	T	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	silent	c.1068	p.N356	0.992	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557	tier1	-	-	72	0	0.00	61	12	16.00
CARNS1	0	genome.wustl.edu	37	11	67191150	67191150	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	67191150	67191150	C	T	SNP	CARNS1	ENST00000445895	human	ensembl	74_37	+1	known	missense	c.1931	p.A644V	0.170	pfscan_ATP-grasp	superfamily_PreATP-grasp_dom,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508				38	0	0.00	26	2	7.14
CCAR2	0	genome.wustl.edu	37	8	22472942	22472942	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	8	22472942	22472942	C	T	SNP	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	missense	c.1210	p.R404C	1.000	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CCAR2	HGNC	ENSG00000158941				56	0	0.00	54	3	5.17
CCDC141	0	genome.wustl.edu	37	2	179914590	179914590	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	179914590	179914590	T	C	SNP	CCDC141	ENST00000420890	human	ensembl	74_37	-1	known	missense	c.79	p.K27E	1.000	NULL	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CCDC141	HGNC	ENSG00000163492	tier1	-	-	67	0	0.00	47	4	7.84
CCDC168	0	genome.wustl.edu	37	13	103386123	103386123	+	Nonsense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	13	103386123	103386123	G	A	SNP	CCDC168	ENST00000322527	human	ensembl	74_37	-1	known	nonsense	c.3037	p.R1013*	0.001	NULL	NULL	-	no_errors	CCDC168	HGNC	ENSG00000175820				50	0	0.00	38	4	9.52
CCDC173	0	genome.wustl.edu	37	2	170502518	170502518	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	170502518	170502518	G	T	SNP	CCDC173	ENST00000447353	human	ensembl	74_37	-1	known	missense	c.1492	p.Q498K	0.994	NULL	NULL	-	no_errors	CCDC173	HGNC	ENSG00000154479	tier1	-	-	90	0	0.00	83	5	5.68
CCR5	0	genome.wustl.edu	37	3	46414667	46414667	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	3	46414667	46414667	G	A	SNP	CCR5	ENST00000292303	human	ensembl	74_37	+1	known	missense	c.274	p.A92T	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ATII_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_rcpt,prints_GPCR_Rhodpsn,prints_Chemokine_CCR5,prints_Chemokine_CCR1,prints_ATII_rcpt	-	no_errors	CCR5	HGNC	ENSG00000160791	tier1	-	-	52	0	0.00	40	4	9.09
CDH12	0	genome.wustl.edu	37	5	21760691	21760691	+	Missense_Mutation	SNP	T	T	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	21760691	21760691	T	G	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.1609	p.N537H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	tier1	-	-	55	0	0.00	64	9	12.33
CDKN1C	0	genome.wustl.edu	37	11	2906386	2906386	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	2906386	2906386	C	T	SNP	CDKN1C	ENST00000414822	human	ensembl	74_37	-1	known	missense	c.334	p.A112T	0.004	NULL	pfam_CDI	-	no_errors	CDKN1C	HGNC	ENSG00000129757				31	0	0.00	10	7	38.89
CDKN2A	0	genome.wustl.edu	37	9	21971119	21971119	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	9	21971119	21971119	C	T	SNP	CDKN2A	ENST00000446177	human	ensembl	74_37	-1	known	missense	c.239	p.R80Q	0.875	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CDKN2A	HGNC	ENSG00000147889				25	0	0.00	19	3	13.64
CEBPA	0	genome.wustl.edu	37	19	33793280	33793280	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	33793280	33793280	G	T	SNP	CEBPA	ENST00000498907	human	ensembl	74_37	-1	known	missense	c.41	p.P14Q	0.995	pirsf_CCAAT/enhancer-binding	pfam_bZIP,smart_bZIP,pirsf_CCAAT/enhancer-binding,pfscan_bZIP	-	no_errors	CEBPA	HGNC	ENSG00000245848				12	0	0.00	3	3	50.00
CENPI	0	genome.wustl.edu	37	X	100395679	100395679	+	Nonsense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	X	100395679	100395679	G	T	SNP	CENPI	ENST00000372927	human	ensembl	74_37	+1	known	nonsense	c.1495	p.E499*	1.000	pfam_CENP-I	pfam_CENP-I	-	no_errors	CENPI	HGNC	ENSG00000102384	tier1	-	-	23	0	0.00	28	4	12.50
CHEK2	0	genome.wustl.edu	37	22	29130401	29130401	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	22	29130401	29130401	A	T	SNP	CHEK2	ENST00000382580	human	ensembl	74_37	-1	known	missense	c.309	p.F103L	1.000	superfamily_SMAD_FHA_domain	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765	tier1	-	-	55	0	0.00	44	4	8.33
CHM	0	genome.wustl.edu	37	X	85117942	85117943	+	RNA	INS	-	-	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	X	85117942	85117943	-	A	INS	CHM	ENST00000467744	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.002	-	-	-	no_errors	CHM	HGNC	ENSG00000188419	tier1			35	0	0.00	35	3	7.89
CLEC17A	0	genome.wustl.edu	37	19	14720879	14720879	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	14720879	14720879	C	A	SNP	CLEC17A	ENST00000417570	human	ensembl	74_37	+1	known	missense	c.1008	p.F336L	0.964	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC17A	HGNC	ENSG00000187912	tier1	-	-	80	0	0.00	45	4	8.16
CNTNAP3B	0	genome.wustl.edu	37	9	43844248	43844248	+	Missense_Mutation	SNP	T	T	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	9	43844248	43844248	T	G	SNP	CNTNAP3B	ENST00000377564	human	ensembl	74_37	+1	known	missense	c.1582	p.L528V	0.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3B	HGNC	ENSG00000154529	tier1	-	-	101	0	0.00	74	17	18.68
COL11A2	0	genome.wustl.edu	37	6	33141688	33141688	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	33141688	33141688	G	A	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	missense	c.2545	p.R849W	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				51	0	0.00	37	2	5.00
COL4A2	0	genome.wustl.edu	37	13	111160399	111160399	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	13	111160399	111160399	C	T	SNP	COL4A2	ENST00000360467	human	ensembl	74_37	+1	known	missense	c.4712	p.A1571V	0.998	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871				40	0	0.00	37	2	5.13
CUL1	0	genome.wustl.edu	37	7	148480983	148480983	+	Splice_Site	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	148480983	148480983	G	T	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	splice_site	c.1191+1	e9+1	1.000	-	-	-	no_errors	CUL1	HGNC	ENSG00000055130	tier1	-	-	77	0	0.00	59	4	6.35
CUX1	0	genome.wustl.edu	37	7	101740766	101740766	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	101740766	101740766	G	A	SNP	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	missense	c.424	p.E142K	0.999	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923	tier1	-	-	66	0	0.00	38	9	19.15
CXXC5	0	genome.wustl.edu	37	5	139060236	139060236	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	139060236	139060236	C	T	SNP	CXXC5	ENST00000302517	human	ensembl	74_37	+1	known	missense	c.128	p.A43V	0.017	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	CXXC5	HGNC	ENSG00000171604				56	0	0.00	43	4	8.51
DAGLB	0	genome.wustl.edu	37	7	6487513	6487513	+	RNA	SNP	G	G	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	6487513	6487513	G	C	SNP	DAGLB	ENST00000479922	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.856	-	-	-	no_errors	DAGLB	HGNC	ENSG00000164535	tier1	-	-	42	0	0.00	32	13	28.89
DCAF12	0	genome.wustl.edu	37	9	34125063	34125063	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	9	34125063	34125063	C	A	SNP	DCAF12	ENST00000361264	human	ensembl	74_37	-1	known	missense	c.291	p.W97C	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12	HGNC	ENSG00000198876				20	0	0.00	22	3	12.00
DCPS	0	genome.wustl.edu	37	11	126215610	126215610	+	RNA	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	126215610	126215610	G	A	SNP	DCPS	ENST00000530860	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.829	-	-	-	no_errors	DCPS	HGNC	ENSG00000110063	tier1	-	-	29	0	0.00	17	3	15.00
DDX3X	0	genome.wustl.edu	37	X	41207101	41207101	+	RNA	SNP	T	T	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	X	41207101	41207101	T	G	SNP	DDX3X	ENST00000478993	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DDX3X	HGNC	ENSG00000215301	tier1	-	-	30	0	0.00	18	8	30.77
DDX60L	0	genome.wustl.edu	37	4	169391990	169391991	+	Splice_Site	INS	-	-	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	4	169391990	169391991	-	A	INS	DDX60L	ENST00000513901	human	ensembl	74_37	-1	known	splice_site_ins	c.NULL	NULL	0.006:0.001	-	-	-	no_errors	DDX60L	HGNC	ENSG00000181381	tier1			15	0	0.00	7	3	30.00
DET1	0	genome.wustl.edu	37	15	89074069	89074069	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	89074069	89074069	G	T	SNP	DET1	ENST00000444300	human	ensembl	74_37	-1	known	missense	c.901	p.P301T	0.996	pfam_De-etiolated_protein_1_Det1	pfam_De-etiolated_protein_1_Det1	-	no_errors	DET1	HGNC	ENSG00000140543				45	0	0.00	27	2	6.90
DKK2	0	genome.wustl.edu	37	4	107845203	107845203	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	4	107845203	107845203	G	A	SNP	DKK2	ENST00000285311	human	ensembl	74_37	-1	novel	missense	c.688	p.R230C	1.000	NULL	pfam_Dickkopf_N,superfamily_Zn2-C6_fun-type_DNA-bd	-	no_errors	DKK2	HGNC	ENSG00000155011	tier1	-	-	30	0	0.00	21	10	31.25
DLEC1	0	genome.wustl.edu	37	3	38103733	38103733	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	3	38103733	38103733	C	T	SNP	DLEC1	ENST00000346219	human	ensembl	74_37	+1	known	silent	c.747	p.N249	0.003	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226	tier1	-	-	46	0	0.00	39	5	11.11
DPH6	0	genome.wustl.edu	37	15	35742931	35742931	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	35742931	35742931	T	C	SNP	DPH6	ENST00000256538	human	ensembl	74_37	-1	known	missense	c.460	p.I154V	1.000	pfam_DUF71_dom,tigrfam_DUF71_dom	pfam_DUF71_dom,tigrfam_DUF71_dom	-	no_errors	DPH6	HGNC	ENSG00000134146	tier1	-	-	63	0	0.00	52	4	7.14
DSC1	0	genome.wustl.edu	37	18	28737381	28737381	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	18	28737381	28737381	G	A	SNP	DSC1	ENST00000257198	human	ensembl	74_37	-1	known	missense	c.304	p.R102W	0.000	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_pro_dom,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin/Desmocollin,prints_Cadherin,prints_Desmosomal_cadherin	-	no_errors	DSC1	HGNC	ENSG00000134765	tier1	-	-	75	0	0.00	43	4	8.51
DST	0	genome.wustl.edu	37	6	56357224	56357224	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	56357224	56357224	G	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.20465	p.A6822V	1.000	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				48	0	0.00	38	2	5.00
DUOX1	0	genome.wustl.edu	37	15	45431424	45431424	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	45431424	45431424	G	T	SNP	DUOX1	ENST00000561166	human	ensembl	74_37	+1	known	missense	c.136	p.A46S	0.000	pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Recoverin	-	no_errors	DUOX1	HGNC	ENSG00000137857	tier1	-	-	44	0	0.00	25	4	13.79
EBF2	0	genome.wustl.edu	37	8	25890600	25890600	+	Splice_Site	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	8	25890600	25890600	C	T	SNP	EBF2	ENST00000520164	human	ensembl	74_37	-1	known	splice_site	c.551+1	e6+1	1.000	-	-	-	no_errors	EBF2	HGNC	ENSG00000221818	tier1	-	-	59	0	0.00	38	4	9.52
EFCAB1	0	genome.wustl.edu	37	8	49647756	49647756	+	RNA	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	8	49647756	49647756	G	A	SNP	EFCAB1	ENST00000521002	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EFCAB1	HGNC	ENSG00000034239	tier1	-	-	33	0	0.00	23	8	25.81
EIF2B5	0	genome.wustl.edu	37	3	183855472	183855472	+	Nonsense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	3	183855472	183855472	C	T	SNP	EIF2B5	ENST00000273783	human	ensembl	74_37	+1	known	nonsense	c.385	p.R129*	1.000	NULL	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191	tier1	-	-	43	0	0.00	61	6	8.96
EMR2	0	genome.wustl.edu	37	19	14875291	14875291	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	14875291	14875291	C	A	SNP	EMR2	ENST00000315576	human	ensembl	74_37	-1	known	missense	c.1038	p.K346N	0.002	prints_GPCR_2_CD97	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR2	HGNC	ENSG00000127507	tier1	-	-	61	0	0.00	40	5	11.11
EMR3	0	genome.wustl.edu	37	19	14774282	14774282	+	Silent	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	14774282	14774282	A	G	SNP	EMR3	ENST00000253673	human	ensembl	74_37	-1	known	silent	c.147	p.Y49	0.000	smart_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CD97	-	no_errors	EMR3	HGNC	ENSG00000131355				68	0	0.00	66	4	5.71
EN1	0	genome.wustl.edu	37	2	119600674	119600674	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	119600674	119600674	A	T	SNP	EN1	ENST00000295206	human	ensembl	74_37	-1	known	missense	c.1019	p.L340H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,pfam_Homeobox-engrailed_C-terminal,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeodomain_engrailed,prints_Homeobox_metazoa,prints_Antifreeze_1,prints_K_chnl_volt-dep_Kv1.4	-	no_errors	EN1	HGNC	ENSG00000163064	tier1	-	-	54	0	0.00	46	11	19.30
ENSG00000223697	0	genome.wustl.edu	37	8	133854715	133854715	+	RNA	DEL	T	T	-			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	8	133854715	133854715	T	-	DEL	ENSG00000223697	ENST00000608375	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	AF230666.2	Clone_based_vega_gene	ENSG00000223697	tier1			43	0	0.00	40	5	11.11
ENSG00000259480	0	genome.wustl.edu	37	15	23130582	23130582	+	RNA	SNP	T	T	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	23130582	23130582	T	G	SNP	ENSG00000259480	ENST00000560053	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-26F2.1	Clone_based_vega_gene	ENSG00000259480	tier1	-	-	126	0	0.00	94	29	23.58
ENSG00000261711	0	genome.wustl.edu	37	16	34712321	34712321	+	RNA	SNP	T	T	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	16	34712321	34712321	T	C	SNP	ENSG00000261711	ENST00000569028	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.054	-	-	-	no_errors	RP11-80F22.9	Clone_based_vega_gene	ENSG00000261711	tier1	-	-	54	0	0.00	39	4	9.30
EPB41L1	0	genome.wustl.edu	37	20	34778674	34778674	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	20	34778674	34778674	C	T	SNP	EPB41L1	ENST00000338074	human	ensembl	74_37	+1	known	missense	c.1255	p.R419C	1.000	pfam_FERM-adjacent,pirsf_Band_41_protein	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB_dom,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L1	HGNC	ENSG00000088367	tier1	-	-	37	0	0.00	29	9	23.68
EPS15L1	0	genome.wustl.edu	37	19	16506198	16506198	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	16506198	16506198	G	C	SNP	EPS15L1	ENST00000455140	human	ensembl	74_37	-1	known	missense	c.1872	p.D624E	1.000	NULL	superfamily_Prefoldin,smart_EPS15_homology,smart_EF_hand_dom,smart_Ubiquitin-int_motif,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15L1	HGNC	ENSG00000127527	tier1	-	-	90	0	0.00	69	4	5.48
ERC2	0	genome.wustl.edu	37	3	56044601	56044601	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	3	56044601	56044601	C	T	SNP	ERC2	ENST00000288221	human	ensembl	74_37	-1	known	missense	c.1796	p.R599H	1.000	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672	tier1	-	-	64	0	0.00	43	9	17.31
FAM149B1	0	genome.wustl.edu	37	10	74934538	74934538	+	Silent	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	10	74934538	74934538	A	G	SNP	FAM149B1	ENST00000242505	human	ensembl	74_37	+1	known	silent	c.141	p.T47	0.991	NULL	pfam_DUF3719	-	no_errors	FAM149B1	HGNC	ENSG00000138286				48	0	0.00	41	4	8.89
FARSA	0	genome.wustl.edu	37	19	13041425	13041425	+	Splice_Site	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	13041425	13041425	C	T	SNP	FARSA	ENST00000314606	human	ensembl	74_37	-1	known	splice_site	c.285+1	e2+1	1.000	-	-	-	no_errors	FARSA	HGNC	ENSG00000179115	tier1	-	-	50	0	0.00	25	9	26.47
FBN1	0	genome.wustl.edu	37	15	48805826	48805826	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	48805826	48805826	T	C	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.1508	p.E503G	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	tier1	-	-	44	0	0.00	42	4	8.70
FBXL17	0	genome.wustl.edu	37	5	107521860	107521860	+	Missense_Mutation	SNP	A	A	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	107521860	107521860	A	C	SNP	FBXL17	ENST00000542267	human	ensembl	74_37	-1	known	missense	c.1703	p.L568R	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL17	HGNC	ENSG00000145743	tier1	-	-	100	0	0.00	67	15	18.29
FLYWCH1	0	genome.wustl.edu	37	16	2983971	2983971	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	16	2983971	2983971	G	T	SNP	FLYWCH1	ENST00000399667	human	ensembl	74_37	+1	known	missense	c.1504	p.G502W	0.005	NULL	pfam_Znf_FLYWCH	-	no_errors	FLYWCH1	HGNC	ENSG00000059122	tier1	-	-	17	0	0.00	15	4	20.00
FOXS1	0	genome.wustl.edu	37	20	30432416	30432416	+	Silent	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	20	30432416	30432416	G	A	SNP	FOXS1	ENST00000375978	human	ensembl	74_37	-1	known	silent	c.930	p.S310	0.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXS1	HGNC	ENSG00000179772	tier1	rs139927827	-	81	0	0.00	65	30	31.58
FZR1	0	genome.wustl.edu	37	19	3525874	3525874	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	3525874	3525874	G	T	SNP	FZR1	ENST00000395095	human	ensembl	74_37	+1	known	missense	c.78	p.E26D	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FZR1	HGNC	ENSG00000105325	tier1	-	-	49	0	0.00	58	4	6.45
GAB3	0	genome.wustl.edu	37	X	153906516	153906516	+	Missense_Mutation	SNP	T	T	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	X	153906516	153906516	T	G	SNP	GAB3	ENST00000424127	human	ensembl	74_37	-1	known	missense	c.1703	p.K568T	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219	tier1	-	-	26	0	0.00	11	12	52.17
GABBR1	0	genome.wustl.edu	37	6	29574700	29574700	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	29574700	29574700	C	T	SNP	GABBR1	ENST00000377034	human	ensembl	74_37	-1	known	missense	c.2191	p.V731M	0.994	pfam_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Peripla_BP_I,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681	tier1	-	-	53	0	0.00	27	11	28.95
GALNT7	0	genome.wustl.edu	37	4	174223211	174223211	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	4	174223211	174223211	G	T	SNP	GALNT7	ENST00000265000	human	ensembl	74_37	+1	known	missense	c.1162	p.A388S	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT7	HGNC	ENSG00000109586	tier1	-	-	59	0	0.00	55	4	6.78
GLDC	0	genome.wustl.edu	37	9	6589249	6589249	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	9	6589249	6589249	G	A	SNP	GLDC	ENST00000321612	human	ensembl	74_37	-1	known	missense	c.1526	p.P509L	0.998	tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445	tier1	-	-	46	0	0.00	29	4	12.12
GLI4	0	genome.wustl.edu	37	8	144357978	144357978	+	RNA	SNP	C	C	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	8	144357978	144357978	C	G	SNP	GLI4	ENST00000523812	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GLI4	HGNC	ENSG00000250571	tier1	-	-	34	0	0.00	22	6	21.43
GOLGA3	0	genome.wustl.edu	37	12	133373178	133373178	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	133373178	133373178	G	A	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	missense	c.2047	p.R683W	0.996	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	tier1	-	-	65	0	0.00	47	4	7.84
GPHA2	0	genome.wustl.edu	37	11	64702840	64702840	+	Silent	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	64702840	64702840	G	A	SNP	GPHA2	ENST00000279168	human	ensembl	74_37	-1	known	silent	c.93	p.C31	0.989	pfam_DAN,pfscan_Cys_knot_C,pfscan_Glyco_hormone	pfam_DAN,pfscan_Cys_knot_C,pfscan_Glyco_hormone	-	no_errors	GPHA2	HGNC	ENSG00000149735	tier1	-	-	44	0	0.00	47	4	7.84
GPR153	0	genome.wustl.edu	37	1	6313985	6313985	+	Silent	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	6313985	6313985	G	A	SNP	GPR153	ENST00000377893	human	ensembl	74_37	-1	known	silent	c.579	p.I193	0.983	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GCR_153/162	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR153,prints_GCR_153/162	-	no_errors	GPR153	HGNC	ENSG00000158292	tier1	-	-	40	0	0.00	43	7	14.00
GPR158	0	genome.wustl.edu	37	10	25861813	25861813	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	10	25861813	25861813	G	A	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	missense	c.1750	p.V584I	0.989	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025	tier1	-	-	36	0	0.00	35	9	20.45
GREB1	0	genome.wustl.edu	37	2	11758761	11758761	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	11758761	11758761	C	T	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.3760	p.R1254C	0.001	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208	tier1	-	-	86	0	0.00	57	9	13.64
GRID1	0	genome.wustl.edu	37	10	87615841	87615841	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	10	87615841	87615841	C	A	SNP	GRID1	ENST00000327946	human	ensembl	74_37	-1	known	missense	c.1058	p.R353L	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771				61	0	0.00	37	2	5.13
GRIN2D	0	genome.wustl.edu	37	19	48917815	48917815	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	48917815	48917815	C	T	SNP	GRIN2D	ENST00000263269	human	ensembl	74_37	+1	known	silent	c.1386	p.C462	1.000	smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464				84	0	0.00	38	4	9.52
GSTT1	0	genome.wustl.edu	37	22	24382981	24382981	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	22	24382981	24382981	C	T	SNP	GSTT1	ENST00000418883	human	ensembl	74_37	-1	known	silent	c.213	p.L71	0.000	NULL	superfamily_Thioredoxin-like_fold	-	no_errors	GSTT1	HGNC	ENSG00000184674	tier1	-	-	52	0	0.00	49	4	7.55
GTSF1L	0	genome.wustl.edu	37	20	42355079	42355079	+	Nonsense_Mutation	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	20	42355079	42355079	C	A	SNP	GTSF1L	ENST00000373003	human	ensembl	74_37	-1	known	nonsense	c.256	p.E86*	0.001	NULL	pfam_TRM13/UPF0224_CHHC_Znf_dom	-	no_errors	GTSF1L	HGNC	ENSG00000124196	tier1	-	-	46	0	0.00	49	21	30.00
HDAC6	0	genome.wustl.edu	37	X	48676794	48676794	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	X	48676794	48676794	G	A	SNP	HDAC6	ENST00000444343	human	ensembl	74_37	+1	known	missense	c.2204	p.R735H	0.809	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	tier1	-	-	18	0	0.00	11	6	35.29
HDC	0	genome.wustl.edu	37	15	50544900	50544900	+	Silent	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	50544900	50544900	G	T	SNP	HDC	ENST00000267845	human	ensembl	74_37	-1	known	silent	c.859	p.R287	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	HDC	HGNC	ENSG00000140287				48	0	0.00	31	3	8.82
HECW1-IT1	0	genome.wustl.edu	37	7	43157830	43157831	+	RNA	INS	-	-	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	43157830	43157831	-	A	INS	HECW1-IT1	ENST00000322220	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.031:0.000	-	-	-	no_errors	HECW1-IT1	HGNC	ENSG00000181211	tier1			51	0	0.00	32	7	17.95
HIST2H2AC	0	genome.wustl.edu	37	1	149858858	149858858	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	149858858	149858858	A	T	SNP	HIST2H2AC	ENST00000331380	human	ensembl	74_37	+1	known	missense	c.334	p.I112F	1.000	superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST2H2AC	HGNC	ENSG00000184260	tier1	-	-	134	0	0.00	94	24	20.34
HSP90B1	0	genome.wustl.edu	37	12	104335268	104335268	+	Silent	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	104335268	104335268	A	G	SNP	HSP90B1	ENST00000299767	human	ensembl	74_37	+1	known	silent	c.1173	p.T391	0.063	pirsf_Hsp90_fam,pfam_Hsp90_fam,superfamily_Ribosomal_S5_D2-typ_fold	pirsf_Hsp90_fam,pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,prints_Hsp90_N	-	no_errors	HSP90B1	HGNC	ENSG00000166598	tier1	-	-	82	0	0.00	53	15	22.06
IBSP	0	genome.wustl.edu	37	4	88732640	88732640	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	4	88732640	88732640	G	A	SNP	IBSP	ENST00000226284	human	ensembl	74_37	+1	known	missense	c.532	p.G178S	0.980	pfam_BSP_II	pfam_BSP_II	-	no_errors	IBSP	HGNC	ENSG00000029559	tier1	-	-	40	0	0.00	23	8	25.81
ID3	0	genome.wustl.edu	37	1	23885693	23885693	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	23885693	23885693	G	C	SNP	ID3	ENST00000374561	human	ensembl	74_37	-1	known	missense	c.225	p.D75E	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ID3	HGNC	ENSG00000117318	tier1	-	-	55	0	0.00	37	4	9.76
IKZF4	0	genome.wustl.edu	37	12	56428846	56428846	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	56428846	56428846	G	A	SNP	IKZF4	ENST00000262032	human	ensembl	74_37	+1	known	missense	c.1489	p.E497K	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF4	HGNC	ENSG00000123411	tier1	-	-	43	0	0.00	23	6	20.69
IQSEC2	0	genome.wustl.edu	37	X	53279888	53279888	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	X	53279888	53279888	C	A	SNP	IQSEC2	ENST00000396435	human	ensembl	74_37	-1	known	missense	c.1870	p.D624Y	0.994	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_P-loop_NTPase,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC2	HGNC	ENSG00000124313	tier1	-	-	23	0	0.00	21	4	16.00
KANK4	0	genome.wustl.edu	37	1	62732473	62732475	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	62732473	62732475	TTC	-	DEL	KANK4	ENST00000371153	human	ensembl	74_37	-1	known	in_frame_del	c.2250_2248	p.E750in_frame_del	0.965:0.998:1.000	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854	tier1			30	0	0.00	13	3	18.75
KCND2	0	genome.wustl.edu	37	7	119914757	119914757	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	119914757	119914757	C	T	SNP	KCND2	ENST00000331113	human	ensembl	74_37	+1	known	missense	c.71	p.S24L	1.000	pfam_Shal-type	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408	tier1	-	-	40	0	0.00	39	10	20.41
KCNJ16	0	genome.wustl.edu	37	17	68128730	68128730	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	17	68128730	68128730	G	T	SNP	KCNJ16	ENST00000283936	human	ensembl	74_37	+1	known	missense	c.502	p.A168S	0.999	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir5,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ16	HGNC	ENSG00000153822	tier1	-	-	62	0	0.00	43	8	15.69
KCNQ5	0	genome.wustl.edu	37	6	73332285	73332285	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	73332285	73332285	G	A	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	missense	c.368	p.R123H	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	tier1	-	-	70	0	0.00	56	12	17.65
KIAA0922	0	genome.wustl.edu	37	4	154541996	154541996	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	4	154541996	154541996	G	T	SNP	KIAA0922	ENST00000409959	human	ensembl	74_37	+1	known	missense	c.3656	p.R1219I	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	tier1	-	-	72	0	0.00	53	4	7.02
KIAA1033	0	genome.wustl.edu	37	12	105558045	105558045	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	105558045	105558045	C	T	SNP	KIAA1033	ENST00000332180	human	ensembl	74_37	+1	known	missense	c.3314	p.T1105I	1.000	NULL	NULL	-	no_errors	KIAA1033	HGNC	ENSG00000136051	tier1	-	-	33	0	0.00	26	9	25.00
KIAA1324L	0	genome.wustl.edu	37	7	86541502	86541502	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	86541502	86541502	C	A	SNP	KIAA1324L	ENST00000450689	human	ensembl	74_37	-1	known	missense	c.2055	p.L685F	1.000	superfamily_Man6P_isomerase_rcpt-bd_dom	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	KIAA1324L	HGNC	ENSG00000164659	tier1	-	-	26	0	0.00	34	9	20.93
KIAA1614	0	genome.wustl.edu	37	1	180914462	180914462	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	180914462	180914462	G	A	SNP	KIAA1614	ENST00000367588	human	ensembl	74_37	+1	known	missense	c.3311	p.R1104H	0.917	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835	tier1	-	-	52	0	0.00	35	11	23.91
KIAA1683	0	genome.wustl.edu	37	19	18368166	18368166	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	18368166	18368166	C	T	SNP	KIAA1683	ENST00000392413	human	ensembl	74_37	-1	known	missense	c.3928	p.A1310T	0.006	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	KIAA1683	HGNC	ENSG00000130518	tier1	rs138028745	-	41	0	0.00	21	9	30.00
KIF20A	0	genome.wustl.edu	37	5	137522914	137522914	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	137522914	137522914	C	T	SNP	KIF20A	ENST00000394894	human	ensembl	74_37	+1	known	missense	c.2485	p.R829C	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20A	HGNC	ENSG00000112984	tier1	-	-	23	0	0.00	15	7	31.82
KIF3A	0	genome.wustl.edu	37	5	132039180	132039180	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	132039180	132039180	G	A	SNP	KIF3A	ENST00000378735	human	ensembl	74_37	-1	known	missense	c.1369	p.R457W	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF3A	HGNC	ENSG00000131437	tier1	-	-	30	0	0.00	13	5	27.78
KLHL32	0	genome.wustl.edu	37	6	97423985	97423985	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	97423985	97423985	C	T	SNP	KLHL32	ENST00000369261	human	ensembl	74_37	+1	known	silent	c.136	p.L46	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL32	HGNC	ENSG00000186231				49	0	0.00	32	2	5.88
LINC00174	0	genome.wustl.edu	37	7	65842331	65842331	+	RNA	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	65842331	65842331	C	A	SNP	LINC00174	ENST00000421767	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LINC00174	HGNC	ENSG00000179406	tier1	-	-	23	0	0.00	27	4	12.90
LINC00305	0	genome.wustl.edu	37	18	61747618	61747618	+	RNA	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	18	61747618	61747618	G	T	SNP	LINC00305	ENST00000323355	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00305	HGNC	ENSG00000179676	tier1	-	-	48	0	0.00	68	4	5.56
LINC00477	0	genome.wustl.edu	37	12	24736553	24736553	+	RNA	SNP	T	T	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	24736553	24736553	T	C	SNP	LINC00477	ENST00000483544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.389	-	-	-	no_errors	LINC00477	HGNC	ENSG00000197503	tier1	-	-	44	0	0.00	46	9	16.36
LOC101930284	0	genome.wustl.edu	37	1	143230236	143230236	+	RNA	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	143230236	143230236	C	A	SNP	LOC101930284	ENST00000427309	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.204	-	-	-	no_errors	RP11-782C8.5	Clone_based_vega_gene	ENSG00000225278	tier1	-	-	29	0	0.00	28	4	12.50
LOXHD1	0	genome.wustl.edu	37	18	44109156	44109156	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	18	44109156	44109156	T	C	SNP	LOXHD1	ENST00000536736	human	ensembl	74_37	-1	known	missense	c.4514	p.K1505R	1.000	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	-	no_errors	LOXHD1	HGNC	ENSG00000167210	tier1	-	-	55	0	0.00	30	5	14.29
LOXL2	0	genome.wustl.edu	37	8	23167424	23167424	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	8	23167424	23167424	G	A	SNP	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	missense	c.1637	p.T546I	0.999	superfamily_Srcr_rcpt-rel	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				45	0	0.00	32	6	15.38
LRP1B	0	genome.wustl.edu	37	2	141598614	141598614	+	Missense_Mutation	SNP	A	A	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	141598614	141598614	A	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.4987	p.L1663V	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	tier1	-	-	86	0	0.00	50	14	21.88
LRRC16A	0	genome.wustl.edu	37	6	25606315	25606315	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	25606315	25606315	G	A	SNP	LRRC16A	ENST00000329474	human	ensembl	74_37	+1	novel	missense	c.3661	p.E1221K	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	tier1	-	-	61	0	0.00	54	4	6.90
LRRC49	0	genome.wustl.edu	37	15	71329574	71329574	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	71329574	71329574	A	T	SNP	LRRC49	ENST00000260382	human	ensembl	74_37	+1	known	missense	c.1760	p.N587I	0.011	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC49	HGNC	ENSG00000137821				32	0	0.00	19	2	9.52
LRRC7	0	genome.wustl.edu	37	1	70226051	70226051	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	70226051	70226051	C	T	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.164	p.A55V	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	tier1	-	-	49	0	0.00	38	4	9.52
LRRIQ1	0	genome.wustl.edu	37	12	85517961	85517961	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	85517961	85517961	A	G	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	missense	c.3671	p.K1224R	0.012	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	tier1	-	-	39	0	0.00	28	10	26.32
LRTM1	0	genome.wustl.edu	37	3	54958762	54958762	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	3	54958762	54958762	C	T	SNP	LRTM1	ENST00000273286	human	ensembl	74_37	-1	known	missense	c.488	p.R163Q	0.945	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771	tier1	-	-	47	0	0.00	26	3	10.34
LYST	0	genome.wustl.edu	37	1	235976294	235976294	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	235976294	235976294	G	A	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	missense	c.260	p.P87L	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				39	0	0.00	28	2	6.67
MAML3	0	genome.wustl.edu	37	4	140811108	140811108	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	4	140811108	140811108	C	T	SNP	MAML3	ENST00000509479	human	ensembl	74_37	-1	known	silent	c.1482	p.Q494	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	tier1	-	-	26	0	0.00	21	4	16.00
MAN1B1	0	genome.wustl.edu	37	9	139992307	139992307	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	9	139992307	139992307	G	T	SNP	MAN1B1	ENST00000371589	human	ensembl	74_37	+1	known	missense	c.648	p.E216D	0.988	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1B1	HGNC	ENSG00000177239	tier1	-	-	54	0	0.00	64	4	5.88
MANEA	0	genome.wustl.edu	37	6	96044722	96044722	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	96044722	96044722	G	T	SNP	MANEA	ENST00000358812	human	ensembl	74_37	+1	known	missense	c.654	p.K218N	1.000	superfamily_Glycoside_hydrolase_SF	superfamily_Glycoside_hydrolase_SF	-	no_errors	MANEA	HGNC	ENSG00000172469				33	0	0.00	35	2	5.41
MAP2	0	genome.wustl.edu	37	2	210557839	210557839	+	Silent	SNP	T	T	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	210557839	210557839	T	C	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.945	p.S315	0.997	NULL	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	tier1	-	-	43	0	0.00	27	9	25.00
MAP3K7	0	genome.wustl.edu	37	6	91261851	91261851	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	91261851	91261851	G	C	SNP	MAP3K7	ENST00000369329	human	ensembl	74_37	-1	known	missense	c.784	p.L262V	1.000	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K7	HGNC	ENSG00000135341	tier1	-	-	63	0	0.00	58	6	9.38
MAPRE2	0	genome.wustl.edu	37	18	32682021	32682021	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	18	32682021	32682021	G	T	SNP	MAPRE2	ENST00000300249	human	ensembl	74_37	+1	known	missense	c.508	p.V170L	0.993	superfamily_CH-domain	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,superfamily_EB1_C,pfscan_CH-domain	-	no_errors	MAPRE2	HGNC	ENSG00000166974				70	0	0.00	38	3	7.32
MDN1	0	genome.wustl.edu	37	6	90440489	90440489	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	90440489	90440489	C	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.5096	p.G1699V	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	tier1	-	-	71	0	0.00	45	4	8.16
MEGF8	0	genome.wustl.edu	37	19	42855402	42855402	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	42855402	42855402	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	missense	c.2771	p.R924H	1.000	superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				87	0	0.00	52	4	7.14
METTL13	0	genome.wustl.edu	37	1	171753485	171753485	+	Silent	SNP	C	C	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	171753485	171753485	C	G	SNP	METTL13	ENST00000361735	human	ensembl	74_37	+1	known	silent	c.759	p.A253	1.000	NULL	pfam_Methyltransf_11,pfam_Spermidine/spermine_synthase	-	no_errors	METTL13	HGNC	ENSG00000010165	tier1	-	-	44	0	0.00	34	12	26.09
MICA	0	genome.wustl.edu	37	6	31379008	31379008	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	31379008	31379008	C	T	SNP	MICA	ENST00000449934	human	ensembl	74_37	+1	known	missense	c.485	p.A162V	0.001	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	MICA	HGNC	ENSG00000204520	tier1	-	-	37	0	0.00	35	6	14.63
MLLT4	0	genome.wustl.edu	37	6	168265353	168265353	+	Silent	SNP	G	G	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	168265353	168265353	G	C	SNP	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	silent	c.228	p.A76	0.009	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				76	0	0.00	56	3	5.08
MS4A14	0	genome.wustl.edu	37	11	60164185	60164185	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	60164185	60164185	T	C	SNP	MS4A14	ENST00000300187	human	ensembl	74_37	+1	known	missense	c.134	p.L45S	0.715	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928				59	0	0.00	60	4	6.25
MT-ND4L	0	genome.wustl.edu	37	MT	10670	10670	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	MT	10670	10670	C	T	SNP	MT-ND4L	ENST00000361335	human	ensembl	74_37	+1	known	silent	c.201	p.A67	NULL	pfam_NADH_UbQ_OxRdtase_chain4L/K	pfam_NADH_UbQ_OxRdtase_chain4L/K	-	no_errors	MT-ND4L	HGNC	ENSG00000212907	tier1	-	-	33	0	0.00	12	2	14.29
MT1H	0	genome.wustl.edu	37	16	56703817	56703817	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	16	56703817	56703817	C	T	SNP	MT1H	ENST00000332374	human	ensembl	74_37	+1	known	silent	c.21	p.C7	0.025	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	-	no_errors	MT1H	HGNC	ENSG00000205358	tier1	-	-	92	0	0.00	97	6	5.83
MUC5B	0	genome.wustl.edu	37	11	1280192	1280192	+	Silent	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	1280192	1280192	C	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.16623	p.G5541	0.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	tier1	-	-	59	0	0.00	21	11	34.38
MYPN	0	genome.wustl.edu	37	10	69881426	69881426	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	10	69881426	69881426	T	A	SNP	MYPN	ENST00000358913	human	ensembl	74_37	+1	known	missense	c.231	p.N77K	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYPN	HGNC	ENSG00000138347	tier1	-	-	61	0	0.00	42	4	8.70
NACAD	0	genome.wustl.edu	37	7	45122736	45122736	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	45122736	45122736	C	T	SNP	NACAD	ENST00000490531	human	ensembl	74_37	-1	known	missense	c.3043	p.A1015T	0.000	NULL	pfam_Nas_poly-pep-assoc_cplx_dom,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	NACAD	HGNC	ENSG00000136274	tier1	-	-	33	0	0.00	12	3	20.00
NAP1L3	0	genome.wustl.edu	37	X	92926986	92926986	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	X	92926986	92926986	A	G	SNP	NAP1L3	ENST00000373079	human	ensembl	74_37	-1	known	missense	c.1318	p.F440L	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L3	HGNC	ENSG00000186310	tier1	-	-	34	0	0.00	14	6	30.00
NBEA	0	genome.wustl.edu	37	13	35730247	35730248	+	Frame_Shift_Ins	INS	-	-	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	13	35730247	35730248	0	A	INS	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	frame_shift_ins	c.2555_2556	p.N854fs	1.000:1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				51	0	0.00	78	7	8.24
NCOA6	0	genome.wustl.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	20	33345744	33345744	C	T	SNP	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	silent	c.807	p.Q269	0.002	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646				46	0	0.00	68	4	5.56
NELL2	0	genome.wustl.edu	37	12	44913815	44913815	+	Silent	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	44913815	44913815	G	T	SNP	NELL2	ENST00000437801	human	ensembl	74_37	-1	known	silent	c.2523	p.G841	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613	tier1	-	-	44	0	0.00	33	4	10.81
NMNAT2	0	genome.wustl.edu	37	1	183221791	183221791	+	Silent	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	183221791	183221791	G	T	SNP	NMNAT2	ENST00000287713	human	ensembl	74_37	-1	known	silent	c.909	p.I303	1.000	NULL	pfam_Cyt_trans-like	-	no_errors	NMNAT2	HGNC	ENSG00000157064	tier1	-	-	69	0	0.00	64	4	5.80
NMNAT2	0	genome.wustl.edu	37	1	183387334	183387334	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	183387334	183387334	C	T	SNP	NMNAT2	ENST00000287713	human	ensembl	74_37	-1	known	silent	c.69	p.G23	0.999	pfam_Cyt_trans-like	pfam_Cyt_trans-like	-	no_errors	NMNAT2	HGNC	ENSG00000157064	tier1	-	-	44	0	0.00	37	8	17.78
NOM1	0	genome.wustl.edu	37	7	156752836	156752836	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	156752836	156752836	G	T	SNP	NOM1	ENST00000275820	human	ensembl	74_37	+1	known	missense	c.1600	p.G534W	0.013	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	NOM1	HGNC	ENSG00000146909				70	0	0.00	49	3	5.77
NRP2	0	genome.wustl.edu	37	2	206592644	206592644	+	Silent	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	206592644	206592644	G	T	SNP	NRP2	ENST00000360409	human	ensembl	74_37	+1	known	silent	c.1020	p.T340	0.005	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257				30	0	0.00	34	2	5.56
OPHN1	0	genome.wustl.edu	37	X	67273604	67273604	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	X	67273604	67273604	G	T	SNP	OPHN1	ENST00000355520	human	ensembl	74_37	-1	known	missense	c.2207	p.T736N	0.996	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482				36	0	0.00	55	4	6.67
OR10H5	0	genome.wustl.edu	37	19	15905096	15905096	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	15905096	15905096	C	T	SNP	OR10H5	ENST00000308940	human	ensembl	74_37	+1	known	missense	c.238	p.R80C	0.079	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H5	HGNC	ENSG00000172519	tier1	rs142693914	-	73	0	0.00	62	11	15.07
OR2Y1	0	genome.wustl.edu	37	5	180166493	180166493	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	180166493	180166493	G	A	SNP	OR2Y1	ENST00000307832	human	ensembl	74_37	-1	known	missense	c.566	p.A189V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2Y1	HGNC	ENSG00000174339				25	0	0.00	17	2	10.53
OR4A16	0	genome.wustl.edu	37	11	55111323	55111323	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	55111323	55111323	G	T	SNP	OR4A16	ENST00000314721	human	ensembl	74_37	+1	known	missense	c.647	p.C216F	0.637	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A16	HGNC	ENSG00000181961				50	0	0.00	25	2	7.41
OR4C12	0	genome.wustl.edu	37	11	50003816	50003816	+	Silent	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	50003816	50003816	A	G	SNP	OR4C12	ENST00000335238	human	ensembl	74_37	-1	known	silent	c.222	p.S74	0.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4C12	HGNC	ENSG00000221954	tier1	-	-	77	0	0.00	61	19	23.75
OR4C6	0	genome.wustl.edu	37	11	55432669	55432669	+	Missense_Mutation	SNP	A	A	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	55432669	55432669	A	C	SNP	OR4C6	ENST00000314259	human	ensembl	74_37	+1	known	missense	c.27	p.E9D	0.975	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C6	HGNC	ENSG00000181903	tier1	-	-	31	0	0.00	10	3	23.08
OR51M1	0	genome.wustl.edu	37	11	5411357	5411357	+	Missense_Mutation	SNP	A	A	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	5411357	5411357	A	C	SNP	OR51M1	ENST00000328611	human	ensembl	74_37	+1	known	missense	c.729	p.Q243H	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51M1	HGNC	ENSG00000184698	tier1	-	-	47	0	0.00	39	5	11.36
OR52I2	0	genome.wustl.edu	37	11	4608198	4608198	+	Silent	SNP	T	T	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	4608198	4608198	T	G	SNP	OR52I2	ENST00000312614	human	ensembl	74_37	+1	known	silent	c.156	p.S52	0.078	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52I2	HGNC	ENSG00000226288	tier1	-	-	77	0	0.00	42	11	20.75
OR52N2	0	genome.wustl.edu	37	11	5841919	5841919	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	5841919	5841919	G	A	SNP	OR52N2	ENST00000317037	human	ensembl	74_37	+1	known	missense	c.354	p.M118I	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52N2	HGNC	ENSG00000180988				49	0	0.00	27	2	6.67
OR5W2	0	genome.wustl.edu	37	11	55681987	55681987	+	Missense_Mutation	SNP	T	T	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	55681987	55681987	T	G	SNP	OR5W2	ENST00000344514	human	ensembl	74_37	-1	known	missense	c.72	p.K24N	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5W2	HGNC	ENSG00000187612	tier1	-	-	58	0	0.00	47	8	14.55
OR8H1	0	genome.wustl.edu	37	11	56058343	56058343	+	Missense_Mutation	SNP	A	A	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	56058343	56058343	A	C	SNP	OR8H1	ENST00000313022	human	ensembl	74_37	-1	known	missense	c.196	p.L66V	0.046	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H1	HGNC	ENSG00000181693	tier1	-	-	81	0	0.00	50	13	20.63
OR8K5	0	genome.wustl.edu	37	11	55927568	55927568	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	55927568	55927568	C	A	SNP	OR8K5	ENST00000313447	human	ensembl	74_37	-1	known	missense	c.226	p.V76F	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8K5	HGNC	ENSG00000181752	tier1	-	-	43	0	0.00	38	7	15.56
OSBPL3	0	genome.wustl.edu	37	7	24874153	24874153	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	24874153	24874153	G	T	SNP	OSBPL3	ENST00000313367	human	ensembl	74_37	-1	known	missense	c.1698	p.S566R	0.989	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882				49	0	0.00	44	3	6.38
PAQR5	0	genome.wustl.edu	37	15	69652441	69652441	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	69652441	69652441	A	G	SNP	PAQR5	ENST00000340965	human	ensembl	74_37	+1	known	missense	c.22	p.R8G	1.000	NULL	pfam_HlyIII-related	-	no_errors	PAQR5	HGNC	ENSG00000137819	tier1	-	-	33	0	0.00	45	4	8.16
PARD3B	0	genome.wustl.edu	37	2	206036969	206036969	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	206036969	206036969	C	T	SNP	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	missense	c.1655	p.A552V	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				68	0	0.00	63	4	5.97
PART1	0	genome.wustl.edu	37	5	59783742	59783743	+	RNA	INS	-	-	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	59783742	59783743	-	A	INS	PART1	ENST00000515734	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.033	-	-	-	no_errors	PART1	HGNC	ENSG00000152931	tier1			21	0	0.00	21	4	16.00
PAXIP1	0	genome.wustl.edu	37	7	154760609	154760611	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	154760609	154760611	CTG	-	DEL	PAXIP1	ENST00000397192	human	ensembl	74_37	-1	known	in_frame_del	c.1302_1300	p.Q434in_frame_del	0.998:0.998:0.999	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PAXIP1	HGNC	ENSG00000157212	tier1			31	0	0.00	36	5	12.20
PCDHA5	0	genome.wustl.edu	37	5	140203227	140203227	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	140203227	140203227	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	missense	c.1867	p.V623M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	tier1	rs138093911	-	136	0	0.00	105	16	13.11
PCDHB6	0	genome.wustl.edu	37	5	140530327	140530327	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	140530327	140530327	C	A	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	missense	c.489	p.S163R	0.958	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	tier1	-	-	34	0	0.00	52	4	7.14
PCM1	0	genome.wustl.edu	37	8	17868164	17868164	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	8	17868164	17868164	A	G	SNP	PCM1	ENST00000325083	human	ensembl	74_37	+1	known	missense	c.5207	p.D1736G	1.000	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674	tier1	-	-	50	0	0.00	44	4	8.33
PCSK9	0	genome.wustl.edu	37	1	55523165	55523165	+	Silent	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	55523165	55523165	A	G	SNP	PCSK9	ENST00000302118	human	ensembl	74_37	+1	known	silent	c.1158	p.S386	0.040	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	pfam_Peptidase_S8/S53_dom,pfam_Inhibitor_I9,superfamily_Peptidase_S8/S53_dom,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK9	HGNC	ENSG00000169174	tier1	-	-	41	0	0.00	47	4	7.84
PDHA2	0	genome.wustl.edu	37	4	96762002	96762002	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	4	96762002	96762002	C	T	SNP	PDHA2	ENST00000295266	human	ensembl	74_37	+1	known	missense	c.701	p.A234V	0.999	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA2	HGNC	ENSG00000163114	tier1	rs201115909	-	64	0	0.00	50	4	7.41
PDZRN4	0	genome.wustl.edu	37	12	41585273	41585273	+	Missense_Mutation	SNP	A	A	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	41585273	41585273	A	C	SNP	PDZRN4	ENST00000402685	human	ensembl	74_37	+1	known	missense	c.662	p.K221T	0.969	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966	tier1	-	-	31	0	0.00	27	11	28.95
PGGT1B	0	genome.wustl.edu	37	5	114557680	114557680	+	Silent	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	114557680	114557680	G	T	SNP	PGGT1B	ENST00000419445	human	ensembl	74_37	-1	known	silent	c.684	p.A228	0.891	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	PGGT1B	HGNC	ENSG00000164219	tier1	-	-	54	0	0.00	32	3	8.57
PIK3R5	0	genome.wustl.edu	37	17	8791758	8791758	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	17	8791758	8791758	G	A	SNP	PIK3R5	ENST00000447110	human	ensembl	74_37	-1	known	missense	c.1346	p.T449M	0.001	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R5	HGNC	ENSG00000141506	tier1	-	-	66	0	0.00	34	7	17.07
PKD2	0	genome.wustl.edu	37	4	88929174	88929176	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	4	88929174	88929176	GAG	-	DEL	PKD2	ENST00000237596	human	ensembl	74_37	+1	known	in_frame_del	c.289_291	p.E100in_frame_del	1.000:1.000:1.000	NULL	pfam_PKD1_2_channel,pfam_Ion_trans_dom,pfscan_EF_hand_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2	HGNC	ENSG00000118762	tier1			33	0	0.00	22	4	15.38
PKDREJ	0	genome.wustl.edu	37	22	46656747	46656747	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	22	46656747	46656747	G	T	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.2473	p.Q825K	0.000	pfscan_REJ-like	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				60	0	0.00	47	4	7.84
PLEKHA7	0	genome.wustl.edu	37	11	16877392	16877392	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	16877392	16877392	C	T	SNP	PLEKHA7	ENST00000448080	human	ensembl	74_37	-1	known	silent	c.375	p.T125	0.029	NULL	pfam_Pleckstrin_homology,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA7	HGNC	ENSG00000166689	tier1	rs145257579	-	51	0	0.00	31	9	22.50
PLEKHB2	0	genome.wustl.edu	37	2	131904337	131904337	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	131904337	131904337	G	T	SNP	PLEKHB2	ENST00000403716	human	ensembl	74_37	+1	known	missense	c.660	p.W220C	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHB2	HGNC	ENSG00000115762	tier1	-	-	68	0	0.00	46	4	8.00
PLXNA2	0	genome.wustl.edu	37	1	208217905	208217905	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	208217905	208217905	C	T	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	silent	c.3822	p.L1274	0.988	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356	tier1	-	-	46	0	0.00	34	4	10.53
POSTN	0	genome.wustl.edu	37	13	38151912	38151912	+	Silent	SNP	T	T	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	13	38151912	38151912	T	C	SNP	POSTN	ENST00000379747	human	ensembl	74_37	-1	known	silent	c.1986	p.K662	1.000	pirsf_TGFb-ind_bIGH3/osteoblast_fac2	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110	tier1	-	-	135	0	0.00	71	12	14.46
POTEH	0	genome.wustl.edu	37	22	16279279	16279279	+	Missense_Mutation	SNP	A	A	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	22	16279279	16279279	A	C	SNP	POTEH	ENST00000343518	human	ensembl	74_37	-1	known	missense	c.944	p.L315R	0.103	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEH	HGNC	ENSG00000198062	tier1	-	-	763	0	0.00	601	41	6.39
PPP1R15A	0	genome.wustl.edu	37	19	49379107	49379107	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	49379107	49379107	G	T	SNP	PPP1R15A	ENST00000200453	human	ensembl	74_37	+1	known	missense	c.1902	p.L634F	0.000	NULL	pfam_Prot_Pase1_reg-su15A/B_C	-	no_errors	PPP1R15A	HGNC	ENSG00000087074	tier1	-	-	48	0	0.00	38	4	9.52
PPP1R21	0	genome.wustl.edu	37	2	48737157	48737157	+	Nonsense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	48737157	48737157	C	T	SNP	PPP1R21	ENST00000294952	human	ensembl	74_37	+1	known	nonsense	c.2089	p.R697*	1.000	pfam_KLRAQ/TTKRSYEDQ_C	pfam_KLRAQ/TTKRSYEDQ_C,pfam_Unchr_KLRAQ/TTKRSYEDQ_N,superfamily_Ferritin-like_SF	-	no_errors	PPP1R21	HGNC	ENSG00000162869	tier1	-	-	32	0	0.00	29	5	14.71
PPP1R9A	0	genome.wustl.edu	37	7	94881072	94881072	+	Splice_Site	SNP	A	A	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	94881072	94881072	A	C	SNP	PPP1R9A	ENST00000289495	human	ensembl	74_37	+1	known	splice_site	c.2331-2	e9-2	1.000	-	-	-	no_errors	PPP1R9A	HGNC	ENSG00000158528	tier1	-	-	62	0	0.00	45	15	25.00
PRF1	0	genome.wustl.edu	37	10	72358125	72358125	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	10	72358125	72358125	C	T	SNP	PRF1	ENST00000373209	human	ensembl	74_37	-1	known	missense	c.1352	p.S451N	0.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_MACPF,pfam_C2_dom,superfamily_C2_dom,smart_MACPF,smart_C2_dom,pfscan_C2_dom	-	no_errors	PRF1	HGNC	ENSG00000180644	tier1	-	-	52	0	0.00	32	5	13.51
PRIM2	0	genome.wustl.edu	37	6	57512786	57512787	+	RNA	INS	-	-	GC			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	57512786	57512787	-	GC	INS	PRIM2	ENST00000389488	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.067:0.057	-	-	-	no_errors	PRIM2	HGNC	ENSG00000146143	tier1			35	0	0.00	16	3	15.79
PROKR1	0	genome.wustl.edu	37	2	68882627	68882627	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	68882627	68882627	C	T	SNP	PROKR1	ENST00000303786	human	ensembl	74_37	+1	known	silent	c.1101	p.G367	0.014	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR1	HGNC	ENSG00000169618				25	0	0.00	26	2	7.14
PROKR2	0	genome.wustl.edu	37	20	5294744	5294744	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	20	5294744	5294744	A	T	SNP	PROKR2	ENST00000217270	human	ensembl	74_37	-1	known	missense	c.272	p.L91H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR2	HGNC	ENSG00000101292	tier1	-	-	79	0	0.00	60	4	6.25
PSD2	0	genome.wustl.edu	37	5	139219650	139219650	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	139219650	139219650	G	T	SNP	PSD2	ENST00000274710	human	ensembl	74_37	+1	known	missense	c.2007	p.Q669H	1.000	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD2	HGNC	ENSG00000146005	tier1	-	-	39	0	0.00	32	4	11.11
PTBP3	0	genome.wustl.edu	37	9	115038236	115038236	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	9	115038236	115038236	C	T	SNP	PTBP3	ENST00000458258	human	ensembl	74_37	-1	known	missense	c.194	p.R65H	1.000	pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP3	HGNC	ENSG00000119314	tier1	-	-	100	0	0.00	107	6	5.31
PTPN13	0	genome.wustl.edu	37	4	87687596	87687596	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	4	87687596	87687596	C	T	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	silent	c.4270	p.L1424	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	tier1	-	-	50	0	0.00	45	4	8.16
PURG	0	genome.wustl.edu	37	8	30890164	30890164	+	Silent	SNP	T	T	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	8	30890164	30890164	T	A	SNP	PURG	ENST00000475541	human	ensembl	74_37	-1	known	silent	c.135	p.S45	0.327	NULL	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	-	no_errors	PURG	HGNC	ENSG00000172733				49	0	0.00	51	4	7.27
RAB4B	0	genome.wustl.edu	37	19	41289869	41289869	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	41289869	41289869	C	T	SNP	RAB4B	ENST00000357052	human	ensembl	74_37	+1	known	missense	c.319	p.R107C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB4B	HGNC	ENSG00000167578	tier1	-	-	93	0	0.00	51	18	26.09
RAD51AP2	0	genome.wustl.edu	37	2	17697366	17697366	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	17697366	17697366	T	C	SNP	RAD51AP2	ENST00000399080	human	ensembl	74_37	-1	known	missense	c.2317	p.K773E	0.000	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842	tier1	-	-	68	0	0.00	42	10	19.23
RASAL2	0	genome.wustl.edu	37	1	178269224	178269224	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	178269224	178269224	A	G	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	missense	c.428	p.E143G	0.999	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	tier1	-	-	57	0	0.00	44	4	8.33
RASGRF1	0	genome.wustl.edu	37	15	79341902	79341902	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	79341902	79341902	C	T	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	missense	c.560	p.R187H	0.994	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335				31	0	0.00	28	3	9.68
RBM26	0	genome.wustl.edu	37	13	79943032	79943032	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	13	79943032	79943032	G	T	SNP	RBM26	ENST00000438724	human	ensembl	74_37	-1	known	missense	c.728	p.S243Y	1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746	tier1	-	-	94	0	0.00	64	4	5.88
RIMS2	0	genome.wustl.edu	37	8	104897916	104897916	+	Silent	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	8	104897916	104897916	G	A	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	silent	c.1089	p.R363	0.998	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	tier1	-	-	58	0	0.00	40	4	9.09
RNF10	0	genome.wustl.edu	37	12	120995414	120995414	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	120995414	120995414	G	A	SNP	RNF10	ENST00000413266	human	ensembl	74_37	+1	known	missense	c.896	p.R299K	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF10	HGNC	ENSG00000022840	tier1	-	-	46	0	0.00	18	6	25.00
RNF213	0	genome.wustl.edu	37	17	78272202	78272202	+	Silent	SNP	G	G	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	17	78272202	78272202	G	C	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	silent	c.2094	p.L698	0.991	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				28	0	0.00	34	2	5.56
RNFT2	0	genome.wustl.edu	37	12	117289626	117289626	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	117289626	117289626	C	T	SNP	RNFT2	ENST00000319176	human	ensembl	74_37	+1	putative	silent	c.843	p.P281	0.068	NULL	NULL	-	no_errors	RNFT2	HGNC	ENSG00000135119	tier1	-	-	86	0	0.00	66	4	5.71
RORA	0	genome.wustl.edu	37	15	60792129	60792129	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	60792129	60792129	G	T	SNP	RORA	ENST00000261523	human	ensembl	74_37	-1	known	missense	c.1468	p.L490I	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORA	HGNC	ENSG00000069667				55	0	0.00	60	4	6.25
RP1L1	0	genome.wustl.edu	37	8	10480591	10480591	+	Nonsense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	8	10480591	10480591	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	nonsense	c.121	p.R41*	1.000	smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	tier1	-	-	53	0	0.00	35	7	16.67
RPA2	0	genome.wustl.edu	37	1	28240737	28240737	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	28240737	28240737	G	A	SNP	RPA2	ENST00000313433	human	ensembl	74_37	-1	known	missense	c.218	p.A73V	0.000	NULL	pfam_RPA_C,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold	-	no_errors	RPA2	HGNC	ENSG00000117748	tier1	-	-	94	0	0.00	68	4	5.56
RPAP2	0	genome.wustl.edu	37	1	92846361	92846361	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	92846361	92846361	A	T	SNP	RPAP2	ENST00000610020	human	ensembl	74_37	+1	known	missense	c.1769	p.E590V	1.000	NULL	pfam_DUF408	-	no_errors	RPAP2	HGNC	ENSG00000122484	tier1	-	-	83	0	0.00	58	13	18.31
RPAP3	0	genome.wustl.edu	37	12	48090064	48090064	+	Silent	SNP	C	C	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	48090064	48090064	C	G	SNP	RPAP3	ENST00000005386	human	ensembl	74_37	-1	known	silent	c.540	p.L180	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	RPAP3	HGNC	ENSG00000005175				59	0	0.00	66	4	5.71
RPL31	0	genome.wustl.edu	37	2	101622446	101622446	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	101622446	101622446	C	T	SNP	RPL31	ENST00000264258	human	ensembl	74_37	+1	known	missense	c.259	p.R87W	1.000	pfam_Ribosomal_L31e,superfamily_Ribosomal_L31e_dom	pfam_Ribosomal_L31e,superfamily_Ribosomal_L31e_dom	-	no_errors	RPL31	HGNC	ENSG00000071082	tier1	-	-	35	0	0.00	25	4	13.79
RRP12	0	genome.wustl.edu	37	10	99129214	99129214	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	10	99129214	99129214	C	T	SNP	RRP12	ENST00000370992	human	ensembl	74_37	-1	known	missense	c.2923	p.V975M	0.001	superfamily_ARM-type_fold	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749				20	0	0.00	29	4	12.12
RTTN	0	genome.wustl.edu	37	18	67753884	67753884	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	18	67753884	67753884	T	A	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	missense	c.4339	p.M1447L	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	tier1	-	-	75	0	0.00	52	4	7.14
RYR3	0	genome.wustl.edu	37	15	33988632	33988632	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	33988632	33988632	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.6074	p.R2025H	1.000	pfam_Ca-rel_channel	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				43	0	0.00	26	2	7.14
SCN5A	0	genome.wustl.edu	37	3	38651309	38651309	+	Missense_Mutation	SNP	A	A	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	3	38651309	38651309	A	C	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.850	p.F284V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	tier1	-	-	36	0	0.00	35	5	12.50
SEC23B	0	genome.wustl.edu	37	20	18511355	18511355	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	20	18511355	18511355	A	T	SNP	SEC23B	ENST00000262544	human	ensembl	74_37	+1	known	missense	c.1141	p.T381S	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Gelsolin_dom,pfam_Znf_Sec23_Sec24,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23B	HGNC	ENSG00000101310				76	0	0.00	57	3	5.00
SEC31A	0	genome.wustl.edu	37	4	83745770	83745770	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	4	83745770	83745770	G	T	SNP	SEC31A	ENST00000432794	human	ensembl	74_37	-1	known	missense	c.3388	p.L1130I	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674	tier1	-	-	70	0	0.00	56	5	8.20
SEC61A2	0	genome.wustl.edu	37	10	12185143	12185143	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	10	12185143	12185143	G	T	SNP	SEC61A2	ENST00000298428	human	ensembl	74_37	+1	known	missense	c.169	p.D57Y	1.000	pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY/SEC61-alpha,tigrfam_SecY/SEC61-alpha	pfam_SecY/SEC61-alpha,pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY/SEC61-alpha,tigrfam_SecY/SEC61-alpha	-	no_errors	SEC61A2	HGNC	ENSG00000065665				60	0	0.00	60	4	6.25
SELENBP1	0	genome.wustl.edu	37	1	151338125	151338125	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	151338125	151338125	G	A	SNP	SELENBP1	ENST00000426705	human	ensembl	74_37	-1	known	missense	c.1084	p.R362C	1.000	pfam_Se-bd	pfam_Se-bd	-	no_errors	SELENBP1	HGNC	ENSG00000143416	tier1	-	-	43	0	0.00	27	9	25.00
SGOL2	0	genome.wustl.edu	37	2	201399805	201399805	+	Silent	SNP	A	A	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	201399805	201399805	A	C	SNP	SGOL2	ENST00000357799	human	ensembl	74_37	+1	known	silent	c.220	p.R74	1.000	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535	tier1	-	-	97	0	0.00	59	19	24.36
SH2B3	0	genome.wustl.edu	37	12	111885533	111885533	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	111885533	111885533	T	A	SNP	SH2B3	ENST00000341259	human	ensembl	74_37	+1	putative	missense	c.1310	p.M437K	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_Phe_ZIP,pfam_SH2,pfam_Pleckstrin_homology,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2B3	HGNC	ENSG00000111252	tier1	-	-	41	0	0.00	22	10	31.25
SH3BP1	0	genome.wustl.edu	37	22	38061636	38061636	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	22	38061636	38061636	T	C	SNP	SH3BP1	ENST00000599616	human	ensembl	74_37	+1	known	missense	c.1576	p.Y526H	1.000	superfamily_HAD-like_dom	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,superfamily_HAD-like_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092	tier1	-	-	46	0	0.00	43	4	8.51
SIPA1L1	0	genome.wustl.edu	37	14	72090894	72090894	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	14	72090894	72090894	C	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.1759	p.R587W	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	tier1	-	-	47	0	0.00	43	7	14.00
SIRPA	0	genome.wustl.edu	37	20	1896101	1896101	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	20	1896101	1896101	G	A	SNP	SIRPA	ENST00000400068	human	ensembl	74_37	+1	known	missense	c.436	p.A146T	0.976	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPA	HGNC	ENSG00000198053	tier1	-	-	55	0	0.00	37	7	15.91
SIRT5	0	genome.wustl.edu	37	6	13595764	13595764	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	13595764	13595764	G	T	SNP	SIRT5	ENST00000606117	human	ensembl	74_37	+1	known	missense	c.531	p.K177N	1.000	pfam_Sirtuin,pfscan_Ssirtuin_cat_dom	pfam_Sirtuin,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT5	HGNC	ENSG00000124523	tier1	-	-	45	0	0.00	51	4	7.27
SLC30A8	0	genome.wustl.edu	37	8	118159330	118159330	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	8	118159330	118159330	C	T	SNP	SLC30A8	ENST00000456015	human	ensembl	74_37	+1	known	missense	c.209	p.A70V	1.000	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A8	HGNC	ENSG00000164756				36	0	0.00	37	2	5.13
SLC39A12	0	genome.wustl.edu	37	10	18276412	18276412	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	10	18276412	18276412	C	T	SNP	SLC39A12	ENST00000377369	human	ensembl	74_37	+1	known	silent	c.1101	p.Y367	1.000	NULL	pfam_ZIP	-	no_errors	SLC39A12	HGNC	ENSG00000148482				32	0	0.00	35	2	5.41
SLC4A4	0	genome.wustl.edu	37	4	72425833	72425833	+	Frame_Shift_Del	DEL	A	A	-			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	4	72425833	72425833	A	-	DEL	SLC4A4	ENST00000425175	human	ensembl	74_37	+1	known	frame_shift_del	c.2961	p.G989fs	1.000	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	tier1			41	0	0.00	33	3	8.33
SLC6A10P	0	genome.wustl.edu	37	16	32896410	32896410	+	RNA	SNP	G	G	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	16	32896410	32896410	G	C	SNP	SLC6A10P	ENST00000330048	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	SLC6A10P	HGNC	ENSG00000214617	tier1	-	-	14	0	0.00	11	6	35.29
SLC6A5	0	genome.wustl.edu	37	11	20628637	20628637	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	20628637	20628637	C	T	SNP	SLC6A5	ENST00000525748	human	ensembl	74_37	+1	known	missense	c.764	p.A255V	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970	tier1	-	-	61	0	0.00	38	4	9.52
SLIT1	0	genome.wustl.edu	37	10	98808783	98808783	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	10	98808783	98808783	C	T	SNP	SLIT1	ENST00000266058	human	ensembl	74_37	-1	known	missense	c.1394	p.R465H	1.000	pfam_Cys-rich_flank_reg_C,smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EG-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122	tier1	-	-	83	0	0.00	59	10	14.49
SMCHD1	0	genome.wustl.edu	37	18	2688427	2688427	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	18	2688427	2688427	C	T	SNP	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	missense	c.674	p.P225L	0.997	superfamily_HATPase_ATP-bd	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	tier1	-	-	82	0	0.00	110	14	11.29
SNHG14	0	genome.wustl.edu	37	15	25432513	25432513	+	RNA	SNP	A	A	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	25432513	25432513	A	C	SNP	SNHG14	ENST00000424208	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078	tier1	-	-	26	0	0.00	15	15	50.00
SOGA2	0	genome.wustl.edu	37	18	8793068	8793068	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	18	8793068	8793068	G	A	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	missense	c.1960	p.A654T	0.711	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				36	0	0.00	31	2	6.06
SP8	0	genome.wustl.edu	37	7	20824044	20824046	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	20824044	20824046	GCC	-	DEL	SP8	ENST00000418710	human	ensembl	74_37	-1	known	in_frame_del	c.1392_1390	p.G464in_frame_del	1.000:1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Antifreeze_1	-	no_errors	SP8	HGNC	ENSG00000164651	tier1			20	0	0.00	8	3	27.27
SPAG17	0	genome.wustl.edu	37	1	118624196	118624196	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	118624196	118624196	T	A	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	missense	c.1832	p.E611V	0.947	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				46	0	0.00	48	3	5.88
SRFBP1	0	genome.wustl.edu	37	5	121330324	121330324	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	121330324	121330324	G	T	SNP	SRFBP1	ENST00000339397	human	ensembl	74_37	+1	known	missense	c.229	p.A77S	1.000	NULL	pfam_Bud-site_select_BUD22	-	no_errors	SRFBP1	HGNC	ENSG00000151304				58	0	0.00	59	4	6.35
STAT3	0	genome.wustl.edu	37	17	40475078	40475078	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	17	40475078	40475078	C	T	SNP	STAT3	ENST00000264657	human	ensembl	74_37	-1	known	missense	c.1832	p.S611N	1.000	pfam_SH2,pfscan_SH2	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT3	HGNC	ENSG00000168610	tier1	-	-	44	0	0.00	54	4	6.90
STT3B	0	genome.wustl.edu	37	3	31674472	31674472	+	Nonsense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	3	31674472	31674472	G	T	SNP	STT3B	ENST00000295770	human	ensembl	74_37	+1	known	nonsense	c.2233	p.E745*	1.000	NULL	pfam_Oligo_trans_STT3	-	no_errors	STT3B	HGNC	ENSG00000163527				65	0	0.00	53	4	7.02
SYNCRIP	0	genome.wustl.edu	37	6	86332363	86332363	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	86332363	86332363	T	A	SNP	SYNCRIP	ENST00000369622	human	ensembl	74_37	-1	known	missense	c.845	p.K282M	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316				49	0	0.00	35	2	5.41
SYNE1	0	genome.wustl.edu	37	6	152473212	152473212	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	152473212	152473212	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.24194	p.R8065H	1.000	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	tier1	-	-	57	0	0.00	27	12	30.77
TBC1D27	0	genome.wustl.edu	37	17	16829387	16829387	+	RNA	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	17	16829387	16829387	A	G	SNP	TBC1D27	ENST00000261651	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	TBC1D27	HGNC	ENSG00000128438	tier1	-	-	51	0	0.00	33	14	29.79
TEAD4	0	genome.wustl.edu	37	12	3104001	3104001	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	3104001	3104001	C	T	SNP	TEAD4	ENST00000359864	human	ensembl	74_37	+1	known	silent	c.69	p.T23	0.993	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD4	HGNC	ENSG00000197905	tier1	rs149191988	-	63	0	0.00	38	8	17.39
TENM1	0	genome.wustl.edu	37	X	123631044	123631044	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	X	123631044	123631044	C	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.3517	p.G1173S	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694	tier1	-	-	43	0	0.00	23	18	43.90
TF	0	genome.wustl.edu	37	3	133476751	133476751	+	Nonsense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	3	133476751	133476751	G	T	SNP	TF	ENST00000402696	human	ensembl	74_37	+1	known	nonsense	c.1009	p.E337*	0.000	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	TF	HGNC	ENSG00000091513				54	0	0.00	47	3	6.00
THOC2	0	genome.wustl.edu	37	X	122802071	122802071	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	X	122802071	122802071	G	T	SNP	THOC2	ENST00000245838	human	ensembl	74_37	-1	known	missense	c.956	p.S319Y	1.000	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676	tier1	-	-	42	0	0.00	29	4	12.12
TIGD7	0	genome.wustl.edu	37	16	3349697	3349697	+	Silent	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	16	3349697	3349697	G	T	SNP	TIGD7	ENST00000268674	human	ensembl	74_37	-1	known	silent	c.918	p.S306	0.486	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD7	HGNC	ENSG00000140993				28	0	0.00	18	2	10.00
TKT	0	genome.wustl.edu	37	3	53262291	53262291	+	Splice_Site	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	3	53262291	53262291	C	T	SNP	TKT	ENST00000423525	human	ensembl	74_37	-1	known	splice_site	c.1479+1	e11+1	1.000	-	-	-	no_errors	TKT	HGNC	ENSG00000163931	tier1	-	-	56	0	0.00	46	4	8.00
TMEM117	0	genome.wustl.edu	37	12	44783276	44783276	+	RNA	SNP	A	A	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	44783276	44783276	A	C	SNP	TMEM117	ENST00000546978	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.929	-	-	-	no_errors	TMEM117	HGNC	ENSG00000139173	tier1	-	-	38	0	0.00	28	9	24.32
TMEM8B	0	genome.wustl.edu	37	9	35835363	35835363	+	RNA	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	9	35835363	35835363	C	A	SNP	TMEM8B	ENST00000464519	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.091	-	-	-	no_errors	TMEM8B	HGNC	ENSG00000137103	tier1	-	-	52	0	0.00	26	12	31.58
TMTC1	0	genome.wustl.edu	37	12	29936404	29936404	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	12	29936404	29936404	G	A	SNP	TMTC1	ENST00000539277	human	ensembl	74_37	-1	putative	missense	c.281	p.P94L	1.000	NULL	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687	tier1	-	-	151	0	0.00	107	34	24.11
TOP2B	0	genome.wustl.edu	37	3	25675418	25675418	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	3	25675418	25675418	C	T	SNP	TOP2B	ENST00000264331	human	ensembl	74_37	-1	known	missense	c.940	p.A314T	1.000	pfam_Topo_IIA_bsu_dom2,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2B	HGNC	ENSG00000077097	tier1	-	-	56	0	0.00	40	4	9.09
TOPBP1	0	genome.wustl.edu	37	3	133362168	133362168	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	3	133362168	133362168	G	T	SNP	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	missense	c.1897	p.L633I	1.000	superfamily_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781				46	0	0.00	32	2	5.88
TP53	0	genome.wustl.edu	37	17	7578395	7578395	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	17	7578395	7578395	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.535	p.H179Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	36	0	0.00	28	10	26.32
TP53TG1	0	genome.wustl.edu	37	7	86974517	86974517	+	RNA	SNP	T	T	C			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	86974517	86974517	T	C	SNP	TP53TG1	ENST00000359941	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TP53TG1	HGNC	ENSG00000182165	tier1	-	-	49	0	0.00	31	18	36.73
TRAP1	0	genome.wustl.edu	37	16	3722755	3722755	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	16	3722755	3722755	G	T	SNP	TRAP1	ENST00000246957	human	ensembl	74_37	-1	known	missense	c.1111	p.L371I	1.000	pfam_Hsp90_fam,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Hsp90_fam	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	TRAP1	HGNC	ENSG00000126602	tier1	-	-	50	0	0.00	39	4	9.30
TRIM63	0	genome.wustl.edu	37	1	26386784	26386784	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	26386784	26386784	C	T	SNP	TRIM63	ENST00000374272	human	ensembl	74_37	-1	known	silent	c.570	p.Q190	1.000	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM63	HGNC	ENSG00000158022	tier1	-	-	51	0	0.00	32	8	20.00
TRIP12	0	genome.wustl.edu	37	2	230683196	230683196	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	230683196	230683196	G	T	SNP	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	missense	c.1339	p.Q447K	1.000	superfamily_ARM-type_fold	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827				73	0	0.00	76	4	5.00
TSKU	0	genome.wustl.edu	37	11	76506652	76506652	+	Splice_Site	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	76506652	76506652	G	A	SNP	TSKU	ENST00000333090	human	ensembl	74_37	+1	known	splice_site	c.1-1	e1-1	0.940	-	-	-	no_errors	TSKU	HGNC	ENSG00000182704				51	0	0.00	43	4	8.51
TTN	0	genome.wustl.edu	37	2	179471802	179471802	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	179471802	179471802	A	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.45823	p.F15275I	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	33	0	0.00	30	9	23.08
TTN	0	genome.wustl.edu	37	2	179602912	179602912	+	Silent	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	179602912	179602912	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.10536	p.S3512	0.701	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	81	0	0.00	68	4	5.41
TUBBP5	0	genome.wustl.edu	37	9	141071577	141071577	+	RNA	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	9	141071577	141071577	C	T	SNP	TUBBP5	ENST00000290377	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247	tier1	-	-	138	0	0.00	122	25	16.89
TYRO3	0	genome.wustl.edu	37	15	41870083	41870083	+	Splice_Site	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	41870083	41870083	G	T	SNP	TYRO3	ENST00000263798	human	ensembl	74_37	+1	known	splice_site	c.2283-1	e19-1	1.000	-	-	-	no_errors	TYRO3	HGNC	ENSG00000092445				74	0	0.00	38	3	7.32
UFC1	0	genome.wustl.edu	37	1	161126856	161126856	+	RNA	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	161126856	161126856	A	G	SNP	UFC1	ENST00000482672	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UFC1	HGNC	ENSG00000143222	tier1	-	-	42	0	0.00	27	6	18.18
UNC93B1	0	genome.wustl.edu	37	11	67770600	67770600	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	67770600	67770600	C	A	SNP	UNC93B1	ENST00000227471	human	ensembl	74_37	-1	known	missense	c.284	p.R95L	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93B1	HGNC	ENSG00000110057	tier1	-	-	25	0	0.00	30	5	14.29
USP7	0	genome.wustl.edu	37	16	8989526	8989527	+	Frame_Shift_Ins	INS	-	-	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	16	8989526	8989527	-	G	INS	USP7	ENST00000344836	human	ensembl	74_37	-1	known	frame_shift_ins	c.2892_2891	p.A965fs	0.071:1.000	NULL	pfam_Peptidase_C19/C67,pfam_MATH,pfam_USP7_ICP0-binding_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19/C67	-	no_errors	USP7	HGNC	ENSG00000187555	tier1			48	0	0.00	49	9	15.52
UST	0	genome.wustl.edu	37	6	149208144	149208144	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	6	149208144	149208144	C	T	SNP	UST	ENST00000367463	human	ensembl	74_37	+1	known	silent	c.270	p.D90	1.000	superfamily_P-loop_NTPase	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	UST	HGNC	ENSG00000111962				63	0	0.00	66	4	5.71
VIL1	0	genome.wustl.edu	37	2	219296821	219296821	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	219296821	219296821	G	A	SNP	VIL1	ENST00000248444	human	ensembl	74_37	+1	known	missense	c.1256	p.G419D	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VIL1	HGNC	ENSG00000127831				36	0	0.00	35	4	10.26
VPRBP	0	genome.wustl.edu	37	3	51456251	51456251	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	3	51456251	51456251	G	A	SNP	VPRBP	ENST00000335891	human	ensembl	74_37	-1	known	missense	c.1969	p.R657W	1.000	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	VPRBP	HGNC	ENSG00000145041	tier1	-	-	34	0	0.00	20	11	35.48
VPS13B	0	genome.wustl.edu	37	8	100829828	100829828	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	8	100829828	100829828	G	T	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.8233	p.V2745F	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	tier1	-	-	55	0	0.00	42	4	8.70
VWDE	0	genome.wustl.edu	37	7	12396913	12396913	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	12396913	12396913	G	A	SNP	VWDE	ENST00000452576	human	ensembl	74_37	-1	known	missense	c.3503	p.A1168V	0.909	superfamily_Cadherin-like,smart_EG-like_dom	pfam_VWF_type-D,superfamily_Cadherin-like,smart_VWF_type-D,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	VWDE	HGNC	ENSG00000146530	tier1	-	-	62	0	0.00	47	4	7.84
WAC	0	genome.wustl.edu	37	10	28899699	28899699	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	10	28899699	28899699	G	A	SNP	WAC	ENST00000354911	human	ensembl	74_37	+1	known	missense	c.1237	p.A413T	1.000	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WAC	HGNC	ENSG00000095787	tier1	-	-	80	0	0.00	75	4	5.06
WBSCR17	0	genome.wustl.edu	37	7	70885995	70885995	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	7	70885995	70885995	A	T	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.866	p.E289V	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274	tier1	-	-	68	0	0.00	61	12	16.44
WDR72	0	genome.wustl.edu	37	15	54003577	54003577	+	Silent	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	54003577	54003577	G	A	SNP	WDR72	ENST00000360509	human	ensembl	74_37	-1	known	silent	c.813	p.I271	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	tier1	-	-	58	0	0.00	42	4	8.70
WT1	0	genome.wustl.edu	37	11	32456254	32456254	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	11	32456254	32456254	C	A	SNP	WT1	ENST00000332351	human	ensembl	74_37	-1	known	missense	c.638	p.R213L	1.000	pfam_Wilms_tumour_N	pfam_Wilms_tumour_N,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Wilms_tumour	-	no_errors	WT1	HGNC	ENSG00000184937	tier1	-	-	40	0	0.00	39	6	13.33
WWC2	0	genome.wustl.edu	37	4	184182451	184182451	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	4	184182451	184182451	G	T	SNP	WWC2	ENST00000448232	human	ensembl	74_37	+1	known	missense	c.1675	p.G559C	0.952	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC2	HGNC	ENSG00000151718	tier1	-	-	48	0	0.00	24	3	11.11
WWOX	0	genome.wustl.edu	37	16	78142384	78142384	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	16	78142384	78142384	G	A	SNP	WWOX	ENST00000566780	human	ensembl	74_37	+1	known	missense	c.172	p.D58N	1.000	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_WW_dom,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom,prints_Glc/ribitol_DH	-	no_errors	WWOX	HGNC	ENSG00000186153	tier1	-	-	56	0	0.00	49	5	9.26
XPO1	0	genome.wustl.edu	37	2	61726050	61726051	+	Splice_Site	INS	-	-	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	2	61726050	61726051	-	A	INS	XPO1	ENST00000401558	human	ensembl	74_37	-1	known	splice_site_ins	c.591-3_591-2	e7-2	1.000:0.996	-	-	-	no_errors	XPO1	HGNC	ENSG00000082898	tier1			17	0	0.00	16	3	15.79
XPO4	0	genome.wustl.edu	37	13	21417073	21417073	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	13	21417073	21417073	C	T	SNP	XPO4	ENST00000255305	human	ensembl	74_37	-1	known	missense	c.688	p.A230T	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953	tier1	-	-	139	0	0.00	65	21	24.14
ZC3H13	0	genome.wustl.edu	37	13	46559440	46559440	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	13	46559440	46559440	G	T	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	missense	c.1712	p.P571H	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	tier1	-	-	63	0	0.00	53	5	8.62
ZFAT	0	genome.wustl.edu	37	8	135545194	135545194	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	8	135545194	135545194	G	A	SNP	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	missense	c.2998	p.H1000Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827	tier1	-	-	67	0	0.00	40	14	25.45
ZNF219	0	genome.wustl.edu	37	14	21561155	21561155	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	14	21561155	21561155	G	T	SNP	ZNF219	ENST00000360947	human	ensembl	74_37	-1	known	missense	c.301	p.R101S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Histamine_H3_rcpt	-	no_errors	ZNF219	HGNC	ENSG00000165804				14	0	0.00	24	4	14.29
ZNF280D	0	genome.wustl.edu	37	15	56981230	56981230	+	RNA	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	15	56981230	56981230	G	T	SNP	ZNF280D	ENST00000561126	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.173	-	-	-	no_errors	ZNF280D	HGNC	ENSG00000137871	tier1	-	-	94	0	0.00	66	4	5.71
ZNF488	0	genome.wustl.edu	37	10	48371120	48371120	+	Silent	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	10	48371120	48371120	C	A	SNP	ZNF488	ENST00000395702	human	ensembl	74_37	+1	known	silent	c.588	p.L196	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF488	HGNC	ENSG00000165388				50	0	0.00	41	3	6.82
ZNF561	0	genome.wustl.edu	37	19	9727893	9727893	+	RNA	SNP	C	C	A			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	9727893	9727893	C	A	SNP	ZNF561	ENST00000470932	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF561	HGNC	ENSG00000171469	tier1	-	-	85	0	0.00	49	17	25.76
ZNF585A	0	genome.wustl.edu	37	19	37605982	37605982	+	RNA	SNP	A	A	G			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	19	37605982	37605982	A	G	SNP	ZNF585A	ENST00000588723	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.136	-	-	-	no_errors	ZNF585A	HGNC	ENSG00000196967	tier1	-	-	70	0	0.00	39	6	13.33
ZNF695	0	genome.wustl.edu	37	1	247150387	247150387	+	Nonsense_Mutation	SNP	G	G	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	1	247150387	247150387	G	T	SNP	ZNF695	ENST00000339986	human	ensembl	74_37	-1	known	nonsense	c.1430	p.S477*	0.011	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF695	HGNC	ENSG00000197472	tier1	-	-	68	0	0.00	66	5	7.04
ZSWIM6	0	genome.wustl.edu	37	5	60821679	60821679	+	Silent	SNP	C	C	T			TCGA-L5-A8NL-01A-12D-A37C-09	TCGA-L5-A8NL-11A-12D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b6b94782-491a-4150-bcb6-7c4cc2d0ef25	46ff075c-bad7-476a-8841-bb8e7378c3b9	5	60821679	60821679	C	T	SNP	ZSWIM6	ENST00000252744	human	ensembl	74_37	+1	novel	silent	c.1566	p.C522	0.576	NULL	pfscan_Znf_SWIM,prints_Antifreeze_1	-	no_errors	ZSWIM6	HGNC	ENSG00000130449	tier1	-	-	33	0	0.00	39	4	9.30
