Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCA1	0	genome.wustl.edu	37	9	107646736	107646736	+	Nonsense_Mutation	SNP	C	C	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	9	107646736	107646736	C	A	SNP	ABCA1	ENST00000374736	human	ensembl	74_37	-1	known	nonsense	c.274	p.G92*	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029				59	0	0.00	67	4	5.63
ABCA13	0	genome.wustl.edu	37	7	48634375	48634375	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	48634375	48634375	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.14710	p.R4904W	0.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	tier1	-	-	73	0	0.00	46	22	32.35
ABCC5	0	genome.wustl.edu	37	3	183665162	183665162	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	3	183665162	183665162	C	T	SNP	ABCC5	ENST00000334444	human	ensembl	74_37	-1	known	missense	c.3364	p.G1122R	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC5	HGNC	ENSG00000114770	tier1	-	-	28	0	0.00	21	12	36.36
ABCC8	0	genome.wustl.edu	37	11	17430052	17430052	+	Nonsense_Mutation	SNP	T	T	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	17430052	17430052	T	A	SNP	ABCC8	ENST00000302539	human	ensembl	74_37	-1	known	nonsense	c.2710	p.K904*	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC8	HGNC	ENSG00000006071				40	0	0.00	38	4	9.52
ACACA	0	genome.wustl.edu	37	17	35564696	35564696	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	35564696	35564696	G	T	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.3726	p.N1242K	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	tier1	-	-	56	0	0.00	36	9	20.00
ADAMTSL3	0	genome.wustl.edu	37	15	84611717	84611717	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	15	84611717	84611717	G	A	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	+1	known	silent	c.2373	p.T791	0.023	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218				29	0	0.00	18	4	18.18
ADCY10	0	genome.wustl.edu	37	1	167873231	167873231	+	Splice_Site	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	167873231	167873231	T	C	SNP	ADCY10	ENST00000367851	human	ensembl	74_37	-1	known	splice_site	c.149-2	e2-2	1.000	-	-	-	no_errors	ADCY10	HGNC	ENSG00000143199	tier1	rs142062218	-	88	0	0.00	70	6	7.89
AKAP9	0	genome.wustl.edu	37	7	91712605	91712605	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	91712605	91712605	G	A	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.8318	p.S2773N	0.014	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914	tier1	-	-	37	0	0.00	41	4	8.89
ALDH3A1	0	genome.wustl.edu	37	17	19646651	19646651	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	19646651	19646651	G	T	SNP	ALDH3A1	ENST00000225740	human	ensembl	74_37	-1	known	missense	c.288	p.D96E	0.048	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A1	HGNC	ENSG00000108602				50	0	0.00	38	2	5.00
ALG12	0	genome.wustl.edu	37	22	50301593	50301593	+	Splice_Site	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	22	50301593	50301593	C	T	SNP	ALG12	ENST00000330817	human	ensembl	74_37	-1	known	splice_site	c.769-1	e6-1	1.000	-	-	-	no_errors	ALG12	HGNC	ENSG00000182858	tier1	-	-	37	0	0.00	23	9	28.12
ANKRD45	0	genome.wustl.edu	37	1	173596207	173596207	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	173596207	173596207	G	T	SNP	ANKRD45	ENST00000333279	human	ensembl	74_37	-1	known	missense	c.588	p.D196E	0.997	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD45	HGNC	ENSG00000183831	tier1	-	-	40	0	0.00	52	4	7.14
ARHGAP31	0	genome.wustl.edu	37	3	119101232	119101232	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	3	119101232	119101232	G	A	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	silent	c.525	p.A175	0.006	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	tier1	-	-	45	0	0.00	54	14	20.59
ARHGDIG	0	genome.wustl.edu	37	16	332775	332775	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	16	332775	332775	G	T	SNP	ARHGDIG	ENST00000219409	human	ensembl	74_37	+1	known	missense	c.639	p.W213C	1.000	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	-	no_errors	ARHGDIG	HGNC	ENSG00000242173	tier1	-	-	63	0	0.00	35	4	10.26
ARHGEF11	0	genome.wustl.edu	37	1	156904759	156904759	+	RNA	SNP	T	T	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	156904759	156904759	T	A	SNP	ARHGEF11	ENST00000487682	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.722	-	-	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	tier1	rs111749122	-	50	0	0.00	78	5	6.02
ARSF	0	genome.wustl.edu	37	X	2990074	2990074	+	Silent	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	X	2990074	2990074	T	C	SNP	ARSF	ENST00000359361	human	ensembl	74_37	+1	known	silent	c.19	p.L7	0.000	NULL	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSF	HGNC	ENSG00000062096	tier1	-	-	23	0	0.00	24	4	14.29
ARVCF	0	genome.wustl.edu	37	22	19969146	19969146	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	22	19969146	19969146	C	T	SNP	ARVCF	ENST00000263207	human	ensembl	74_37	-1	known	missense	c.484	p.A162T	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARVCF	HGNC	ENSG00000099889	tier1	-	-	46	0	0.00	26	20	43.48
ASNA1	0	genome.wustl.edu	37	19	12858341	12858341	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	12858341	12858341	G	A	SNP	ASNA1	ENST00000357332	human	ensembl	74_37	+1	known	missense	c.850	p.D284N	0.999	pfam_Anion-transp_ATPase-like_dom,superfamily_P-loop_NTPase,tigrfam_ATPase_ArsA/GET3	pfam_Anion-transp_ATPase-like_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,tigrfam_ATPase_ArsA/GET3	-	no_errors	ASNA1	HGNC	ENSG00000198356	tier1	rs149156095	-	17	0	0.00	15	4	21.05
ATAD2	0	genome.wustl.edu	37	8	124346560	124346560	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	8	124346560	124346560	G	T	SNP	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	missense	c.3214	p.R1072S	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				98	0	0.00	70	4	5.41
ATP1A2	0	genome.wustl.edu	37	1	160105632	160105632	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	160105632	160105632	G	A	SNP	ATP1A2	ENST00000361216	human	ensembl	74_37	+1	known	missense	c.2288	p.R763H	1.000	tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A2	HGNC	ENSG00000018625	tier1	-	-	48	0	0.00	63	10	13.70
ATP2B1	0	genome.wustl.edu	37	12	89992491	89992491	+	Silent	SNP	T	T	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	12	89992491	89992491	T	G	SNP	ATP2B1	ENST00000359142	human	ensembl	74_37	-1	known	silent	c.3381	p.G1127	1.000	pfam_ATP_Ca_trans_C	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATP_Ca_trans_C,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B1	HGNC	ENSG00000070961				21	0	0.00	28	4	12.50
ATP5J2-PTCD1	0	genome.wustl.edu	37	7	99022949	99022949	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	99022949	99022949	C	T	SNP	ATP5J2-PTCD1	ENST00000413834	human	ensembl	74_37	-1	known	silent	c.1353	p.P451	0.004	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	ATP5J2-PTCD1	HGNC	ENSG00000248919	tier1	-	-	56	0	0.00	49	24	32.88
ATXN7L2	0	genome.wustl.edu	37	1	110032706	110032706	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	110032706	110032706	C	T	SNP	ATXN7L2	ENST00000369870	human	ensembl	74_37	+1	known	missense	c.1192	p.P398S	0.001	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L2	HGNC	ENSG00000162650	tier1	-	-	74	0	0.00	68	13	16.05
BACE2	0	genome.wustl.edu	37	21	42647541	42647541	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	21	42647541	42647541	G	A	SNP	BACE2	ENST00000330333	human	ensembl	74_37	+1	known	missense	c.1547	p.R516H	1.000	NULL	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Pept_A1_BACE,prints_Pept_A1_BACE2,prints_Aspartic_peptidase,prints_Pept_A1_BACE1	-	no_errors	BACE2	HGNC	ENSG00000182240	tier1	-	-	9	0	0.00	5	4	44.44
BDNF	0	genome.wustl.edu	37	11	27680474	27680474	+	Splice_Site	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	27680474	27680474	C	T	SNP	BDNF	ENST00000418212	human	ensembl	74_37	-1	known	splice_site	c.1-1	e1-1	0.999	-	-	-	no_errors	BDNF	HGNC	ENSG00000176697	tier1	-	-	63	0	0.00	53	4	7.02
BRDT	0	genome.wustl.edu	37	1	92428479	92428479	+	Silent	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	92428479	92428479	G	T	SNP	BRDT	ENST00000362005	human	ensembl	74_37	+1	known	silent	c.168	p.V56	0.962	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948				52	0	0.00	53	3	5.26
BUB1	0	genome.wustl.edu	37	2	111419341	111419341	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	111419341	111419341	C	T	SNP	BUB1	ENST00000302759	human	ensembl	74_37	-1	known	silent	c.1035	p.Q345	0.012	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	BUB1	HGNC	ENSG00000169679	tier1	-	-	35	0	0.00	29	4	12.12
BYSL	0	genome.wustl.edu	37	6	41897994	41897994	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	41897994	41897994	A	T	SNP	BYSL	ENST00000230340	human	ensembl	74_37	+1	known	missense	c.556	p.R186W	1.000	pfam_Bystin	pfam_Bystin	-	no_errors	BYSL	HGNC	ENSG00000112578				39	0	0.00	45	4	8.16
C11orf95	0	genome.wustl.edu	37	11	63533490	63533490	+	RNA	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	63533490	63533490	C	T	SNP	C11orf95	ENST00000433688	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	C11orf95	HGNC	ENSG00000188070	tier1	-	-	68	0	0.00	34	11	24.44
C12orf52	0	genome.wustl.edu	37	12	113624799	113624799	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	12	113624799	113624799	C	T	SNP	C12orf52	ENST00000548278	human	ensembl	74_37	+1	known	missense	c.248	p.T83I	0.001	NULL	NULL	-	no_errors	C12orf52	HGNC	ENSG00000139405	tier1	-	-	41	0	0.00	18	6	25.00
C12orf55	0	genome.wustl.edu	37	12	97178570	97178570	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	12	97178570	97178570	G	A	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	missense	c.8357	p.G2786D	0.001	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596	tier1	-	-	53	0	0.00	48	18	27.27
C17orf102	0	genome.wustl.edu	37	17	32906277	32906277	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	32906277	32906277	G	A	SNP	C17orf102	ENST00000357754	human	ensembl	74_37	-1	known	missense	c.23	p.T8M	0.000	NULL	NULL	-	no_errors	C17orf102	HGNC	ENSG00000197322	tier1	-	-	50	0	0.00	30	10	25.00
CACNA1H	0	genome.wustl.edu	37	16	1248689	1248689	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	16	1248689	1248689	G	T	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.718	p.V240F	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				36	0	0.00	34	2	5.56
CCDC105	0	genome.wustl.edu	37	19	15132449	15132449	+	Nonsense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	15132449	15132449	G	T	SNP	CCDC105	ENST00000292574	human	ensembl	74_37	+1	known	nonsense	c.1063	p.G355*	0.243	pfam_Tektin	pfam_Tektin	-	no_errors	CCDC105	HGNC	ENSG00000160994				79	0	0.00	56	3	5.08
CCL20	0	genome.wustl.edu	37	2	228680154	228680154	+	RNA	DEL	T	T	-			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	228680154	228680154	T	-	DEL	CCL20	ENST00000473642	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	CCL20	HGNC	ENSG00000115009	tier1			32	0	0.00	28	5	15.15
CD163L1	0	genome.wustl.edu	37	12	7556131	7556131	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	12	7556131	7556131	C	G	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	missense	c.1408	p.D470H	0.998	superfamily_Srcr_rcpt-rel	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675				28	0	0.00	30	2	6.25
CD177	0	genome.wustl.edu	37	19	43859867	43859867	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	43859867	43859867	G	A	SNP	CD177	ENST00000378009	human	ensembl	74_37	+1	known	missense	c.434	p.G145E	0.000	pfam_LY6_UPAR	pfam_LY6_UPAR	-	no_errors	CD177	HGNC	ENSG00000204936	tier1	-	-	81	0	0.00	60	21	25.93
CDH12	0	genome.wustl.edu	37	5	21755909	21755909	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	5	21755909	21755909	C	T	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.1676	p.R559H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	tier1	-	-	61	0	0.00	48	28	36.36
CELSR1	0	genome.wustl.edu	37	22	46786324	46786324	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	22	46786324	46786324	A	G	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	missense	c.6310	p.C2104R	1.000	smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				75	0	0.00	41	4	8.70
CENPE	0	genome.wustl.edu	37	4	104066470	104066470	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	104066470	104066470	C	T	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	missense	c.4594	p.E1532K	0.001	superfamily_Signal_recog_particl_SRP54_hlx	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	tier1	-	-	49	0	0.00	28	14	33.33
CHD3	0	genome.wustl.edu	37	17	7798335	7798335	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	7798335	7798335	A	T	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	missense	c.1370	p.E457V	1.000	superfamily_Znf_FYVE_PHD,pfscan_Znf_PHD-finger	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	tier1	-	-	30	0	0.00	17	11	39.29
CHML	0	genome.wustl.edu	37	1	241798773	241798773	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	241798773	241798773	G	T	SNP	CHML	ENST00000366553	human	ensembl	74_37	-1	known	missense	c.296	p.T99K	0.008	pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHML	HGNC	ENSG00000203668				24	0	0.00	19	2	9.52
CHODL	0	genome.wustl.edu	37	21	19628832	19628832	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	21	19628832	19628832	A	G	SNP	CHODL	ENST00000299295	human	ensembl	74_37	+1	known	missense	c.86	p.K29R	1.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CHODL	HGNC	ENSG00000154645	tier1	-	-	17	0	0.00	14	5	26.32
CLEC14A	0	genome.wustl.edu	37	14	38724628	38724628	+	Missense_Mutation	SNP	G	G	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	14	38724628	38724628	G	C	SNP	CLEC14A	ENST00000342213	human	ensembl	74_37	-1	known	missense	c.600	p.S200R	0.965	NULL	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC14A	HGNC	ENSG00000176435				41	0	0.00	31	3	8.82
CNTN2	0	genome.wustl.edu	37	1	205039134	205039134	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	205039134	205039134	C	T	SNP	CNTN2	ENST00000331830	human	ensembl	74_37	+1	known	silent	c.2376	p.N792	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN2	HGNC	ENSG00000184144	tier1	-	-	57	0	0.00	33	24	42.11
COL11A1	0	genome.wustl.edu	37	1	103380337	103380337	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	103380337	103380337	C	T	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.3883	p.E1295K	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718	tier1	-	-	54	0	0.00	26	13	33.33
COMMD9	0	genome.wustl.edu	37	11	36300161	36300161	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	36300161	36300161	G	A	SNP	COMMD9	ENST00000263401	human	ensembl	74_37	-1	known	silent	c.183	p.L61	0.997	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD9	HGNC	ENSG00000110442				22	0	0.00	21	6	22.22
COX7A2L	0	genome.wustl.edu	37	2	42578455	42578455	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	42578455	42578455	G	T	SNP	COX7A2L	ENST00000234301	human	ensembl	74_37	-1	known	missense	c.249	p.D83E	1.000	pfam_Cyt_c_oxidase_su7a,superfamily_Cyt_c_oxidase_su7a,pirsf_Cyt_c_oxidase_su7a-rel_mt	pfam_Cyt_c_oxidase_su7a,superfamily_Cyt_c_oxidase_su7a,pirsf_Cyt_c_oxidase_su7a-rel_mt	-	no_errors	COX7A2L	HGNC	ENSG00000115944				69	0	0.00	69	4	5.48
CPSF2	0	genome.wustl.edu	37	14	92609414	92609414	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	14	92609414	92609414	C	T	SNP	CPSF2	ENST00000298875	human	ensembl	74_37	+1	known	missense	c.916	p.R306C	1.000	pfam_Beta_Casp	pfam_Beta_Casp,pfam_RMMBL,pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	CPSF2	HGNC	ENSG00000165934	tier1	-	-	112	0	0.00	69	11	13.75
CYFIP2	0	genome.wustl.edu	37	5	156746882	156746882	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	5	156746882	156746882	C	T	SNP	CYFIP2	ENST00000318218	human	ensembl	74_37	+1	known	missense	c.1469	p.T490M	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	tier1	-	-	28	0	0.00	37	4	9.76
CYP2C8	0	genome.wustl.edu	37	10	96802803	96802803	+	Frame_Shift_Del	DEL	A	A	-			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	10	96802803	96802803	A	-	DEL	CYP2C8	ENST00000371270	human	ensembl	74_37	-1	known	frame_shift_del	c.993	p.I331fs	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C8	HGNC	ENSG00000138115	tier1			53	0	0.00	58	7	10.77
CYP3A7	0	genome.wustl.edu	37	7	99308416	99308416	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	99308416	99308416	G	T	SNP	CYP3A7	ENST00000336374	human	ensembl	74_37	-1	known	missense	c.965	p.A322D	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A7	HGNC	ENSG00000160870	tier1	-	-	59	0	0.00	93	6	6.06
CYP4V2	0	genome.wustl.edu	37	4	187131993	187131994	+	RNA	INS	-	-	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	187131993	187131994	-	T	INS	CYP4V2	ENST00000502665	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.075:0.089	-	-	-	no_errors	CYP4V2	HGNC	ENSG00000145476	tier1			8	0	0.00	4	3	42.86
DACH2	0	genome.wustl.edu	37	X	86069837	86069837	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	X	86069837	86069837	G	A	SNP	DACH2	ENST00000373125	human	ensembl	74_37	+1	known	missense	c.1684	p.D562N	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733	tier1	-	-	26	0	0.00	18	19	51.35
DDX19A	0	genome.wustl.edu	37	16	70398975	70398975	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	16	70398975	70398975	A	T	SNP	DDX19A	ENST00000302243	human	ensembl	74_37	+1	known	missense	c.545	p.E182V	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX19A	HGNC	ENSG00000168872				55	0	0.00	64	4	5.88
DISC1	0	genome.wustl.edu	37	1	232172460	232172460	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	232172460	232172460	G	T	SNP	DISC1	ENST00000439617	human	ensembl	74_37	+1	known	missense	c.2448	p.Q816H	1.000	NULL	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946	tier1	-	-	43	0	0.00	42	20	32.26
DNMT1	0	genome.wustl.edu	37	19	10260136	10260136	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	10260136	10260136	G	A	SNP	DNMT1	ENST00000359526	human	ensembl	74_37	-1	known	missense	c.2579	p.A860V	1.000	pirsf_DNA_C5-MeTrfase_1_euk,pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	tier1	-	-	66	0	0.00	43	4	8.51
DSPP	0	genome.wustl.edu	37	4	88536371	88536371	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	88536371	88536371	A	G	SNP	DSPP	ENST00000282478	human	ensembl	74_37	+1	known	missense	c.2557	p.S853G	0.663	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591				94	0	0.00	73	4	5.19
DTX2	0	genome.wustl.edu	37	7	76109743	76109743	+	RNA	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	76109743	76109743	C	T	SNP	DTX2	ENST00000492339	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.278	-	-	-	no_errors	DTX2	HGNC	ENSG00000091073	tier1	-	-	25	0	0.00	17	5	22.73
DUS2	0	genome.wustl.edu	37	16	68112718	68112718	+	Silent	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	16	68112718	68112718	T	C	SNP	DUS2	ENST00000358896	human	ensembl	74_37	+1	known	silent	c.1311	p.P437	0.990	NULL	pfam_tRNA_hU_synthase,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom	-	no_errors	DUS2	HGNC	ENSG00000167264				65	0	0.00	72	4	5.26
EEPD1	0	genome.wustl.edu	37	7	36194611	36194611	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	36194611	36194611	G	A	SNP	EEPD1	ENST00000242108	human	ensembl	74_37	+1	known	silent	c.678	p.L226	1.000	NULL	pfam_HhH_motif,pfam_Endo/exonuclease/phosphatase,pfam_GspK,superfamily_Endo/exonuclease/phosphatase,superfamily_RuvA_2-like,smart_Hlx-hairpin-Hlx_DNA-bd_motif,tigrfam_Competence_ComEA_HhH	-	no_errors	EEPD1	HGNC	ENSG00000122547	tier1	-	-	50	0	0.00	52	4	7.14
EEPD1	0	genome.wustl.edu	37	7	36338707	36338707	+	Silent	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	36338707	36338707	G	T	SNP	EEPD1	ENST00000242108	human	ensembl	74_37	+1	known	silent	c.1602	p.V534	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_HhH_motif,pfam_Endo/exonuclease/phosphatase,pfam_GspK,superfamily_Endo/exonuclease/phosphatase,superfamily_RuvA_2-like,smart_Hlx-hairpin-Hlx_DNA-bd_motif,tigrfam_Competence_ComEA_HhH	-	no_errors	EEPD1	HGNC	ENSG00000122547	tier1	-	-	56	0	0.00	62	4	6.06
EHD1	0	genome.wustl.edu	37	11	64627630	64627630	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	64627630	64627630	C	T	SNP	EHD1	ENST00000320631	human	ensembl	74_37	-1	known	silent	c.681	p.Q227	1.000	superfamily_P-loop_NTPase	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047	tier1	-	-	58	0	0.00	49	4	7.55
EIF2S3	0	genome.wustl.edu	37	X	24091268	24091268	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	X	24091268	24091268	G	T	SNP	EIF2S3	ENST00000253039	human	ensembl	74_37	+1	known	missense	c.1243	p.G415W	1.000	pfam_TIF2_gsu_C,superfamily_Transl_elong_EF1A/Init_IF2_C	pfam_EF_GTP-bd_dom,pfam_TIF2_gsu_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_EF_GTP-bd_dom	-	no_errors	EIF2S3	HGNC	ENSG00000130741	tier1	-	-	48	0	0.00	61	4	6.15
EIF4G1	0	genome.wustl.edu	37	3	184045115	184045115	+	Silent	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	3	184045115	184045115	T	C	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	silent	c.3561	p.P1187	0.158	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				57	0	0.00	40	4	9.09
ELAVL2	0	genome.wustl.edu	37	9	23692817	23692817	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	9	23692817	23692817	C	T	SNP	ELAVL2	ENST00000380117	human	ensembl	74_37	-1	known	missense	c.818	p.G273E	1.000	tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL2	HGNC	ENSG00000107105	tier1	-	-	11	0	0.00	9	6	40.00
ELOVL6	0	genome.wustl.edu	37	4	110980902	110980902	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	110980902	110980902	C	G	SNP	ELOVL6	ENST00000394607	human	ensembl	74_37	-1	known	missense	c.230	p.G77A	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL6	HGNC	ENSG00000170522				29	0	0.00	35	2	5.41
EML5	0	genome.wustl.edu	37	14	89178750	89178750	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	14	89178750	89178750	C	T	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	missense	c.1522	p.V508I	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	tier1	-	-	65	0	0.00	61	5	7.58
ENSG00000187812	0	genome.wustl.edu	37	15	76074431	76074431	+	RNA	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	15	76074431	76074431	C	T	SNP	ENSG00000187812	ENST00000395215	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.107	-	-	-	no_errors	RP11-24M17.5	Clone_based_vega_gene	ENSG00000187812				121	0	0.00	72	6	7.69
ENSG00000221798	0	genome.wustl.edu	37	1	96352173	96352173	+	RNA	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	96352173	96352173	G	A	SNP	ENSG00000221798	ENST00000408871	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.006	-	-	-	no_errors	AC092812.1	Clone_based_ensembl_gene	ENSG00000221798	tier1	-	-	67	0	0.00	22	16	42.11
ENSG00000223059	0	genome.wustl.edu	37	13	88840118	88840118	+	RNA	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	13	88840118	88840118	G	T	SNP	ENSG00000223059	ENST00000411127	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.032	-	-	-	no_errors	AL354896.1	Clone_based_ensembl_gene	ENSG00000223059	tier1	-	-	33	0	0.00	19	7	26.92
ENSG00000229203	0	genome.wustl.edu	37	2	132587690	132587690	+	RNA	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	132587690	132587690	G	A	SNP	ENSG00000229203	ENST00000437330	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC103564.7	Clone_based_vega_gene	ENSG00000229203	tier1	-	-	145	0	0.00	60	28	31.46
ENSG00000237480	0	genome.wustl.edu	37	1	106623892	106623892	+	RNA	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	106623892	106623892	G	A	SNP	ENSG00000237480	ENST00000429608	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.108	-	-	-	no_errors	RP5-947P14.1	Clone_based_vega_gene	ENSG00000237480	tier1	-	-	51	0	0.00	33	20	37.74
ENSG00000264542	0	genome.wustl.edu	37	11	106672094	106672094	+	RNA	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	106672094	106672094	G	T	SNP	ENSG00000264542	ENST00000578526	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.130	-	-	-	no_errors	AP001282.1	Clone_based_ensembl_gene	ENSG00000264542	tier1	-	-	42	0	0.00	30	7	18.92
ENSG00000272973	0	genome.wustl.edu	37	22	24199049	24199049	+	RNA	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	22	24199049	24199049	C	T	SNP	ENSG00000272973	ENST00000609825	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KB-1125A3.11	Clone_based_vega_gene	ENSG00000272973	tier1	-	-	18	0	0.00	9	7	43.75
ENTPD5	0	genome.wustl.edu	37	14	74436726	74436726	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	14	74436726	74436726	C	T	SNP	ENTPD5	ENST00000334696	human	ensembl	74_37	-1	known	missense	c.1187	p.S396N	0.999	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD5	HGNC	ENSG00000187097				41	0	0.00	38	4	9.52
EPG5	0	genome.wustl.edu	37	18	43432583	43432583	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	18	43432583	43432583	C	T	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	missense	c.7589	p.S2530N	0.998	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223	tier1	-	-	66	0	0.00	62	4	6.06
FAM120B	0	genome.wustl.edu	37	6	170704669	170704669	+	Splice_Site	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	170704669	170704669	T	C	SNP	FAM120B	ENST00000537664	human	ensembl	74_37	+1	known	splice_site	c.2761+2	e9+2	1.000	-	-	-	no_errors	FAM120B	HGNC	ENSG00000112584	tier1	-	-	22	0	0.00	12	3	20.00
FAM160A1	0	genome.wustl.edu	37	4	152571290	152571290	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	152571290	152571290	G	T	SNP	FAM160A1	ENST00000435205	human	ensembl	74_37	+1	known	missense	c.2097	p.R699S	0.000	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A1	HGNC	ENSG00000164142	tier1	-	-	56	0	0.00	54	4	6.90
FAM180A	0	genome.wustl.edu	37	7	135433402	135433402	+	RNA	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	135433402	135433402	G	A	SNP	FAM180A	ENST00000435869	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM180A	HGNC	ENSG00000189320	tier1	-	-	23	0	0.00	14	10	41.67
FAM208A	0	genome.wustl.edu	37	3	56707745	56707745	+	Nonsense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	3	56707745	56707745	G	A	SNP	FAM208A	ENST00000355628	human	ensembl	74_37	-1	known	nonsense	c.340	p.Q114*	1.000	NULL	pfam_DUF3715	-	no_errors	FAM208A	HGNC	ENSG00000163946	tier1	-	-	50	0	0.00	30	24	44.44
FAT1	0	genome.wustl.edu	37	4	187542528	187542528	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	187542528	187542528	G	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.5212	p.Q1738K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				14	0	0.00	18	2	10.00
FGFR1	0	genome.wustl.edu	37	8	38285889	38285889	+	Silent	SNP	T	T	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	8	38285889	38285889	T	A	SNP	FGFR1	ENST00000425967	human	ensembl	74_37	-1	known	silent	c.522	p.T174	0.994	pirsf_FGF_rcpt_fam	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782				78	0	0.00	47	3	6.00
FLJ46361	0	genome.wustl.edu	37	10	124538819	124538819	+	RNA	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	10	124538819	124538819	G	T	SNP	FLJ46361	ENST00000439464	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-318C4.2	Clone_based_vega_gene	ENSG00000176584	tier1	-	-	47	0	0.00	25	13	34.21
FLNC	0	genome.wustl.edu	37	7	128488921	128488921	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	128488921	128488921	G	A	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	silent	c.4812	p.P1604	0.025	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	tier1	-	-	14	0	0.00	12	16	57.14
FOXG1	0	genome.wustl.edu	37	14	29237560	29237560	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	14	29237560	29237560	G	A	SNP	FOXG1	ENST00000313071	human	ensembl	74_37	+1	known	missense	c.1075	p.A359T	0.997	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC	ENSG00000176165	tier1	-	-	52	0	0.00	37	9	19.57
FOXJ1	0	genome.wustl.edu	37	17	74133870	74133870	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	74133870	74133870	G	A	SNP	FOXJ1	ENST00000322957	human	ensembl	74_37	-1	known	missense	c.830	p.P277L	0.966	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXJ1	HGNC	ENSG00000129654	tier1	-	-	16	0	0.00	11	5	31.25
FREM1	0	genome.wustl.edu	37	9	14851595	14851595	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	9	14851595	14851595	G	A	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	missense	c.842	p.A281V	0.357	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				27	0	0.00	33	2	5.56
FSHR	0	genome.wustl.edu	37	2	49190735	49190735	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	49190735	49190735	G	T	SNP	FSHR	ENST00000406846	human	ensembl	74_37	-1	known	missense	c.1225	p.L409I	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_7TM,prints_FSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820				32	0	0.00	28	2	6.67
FSIP2	0	genome.wustl.edu	37	2	186666039	186666039	+	Nonsense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	186666039	186666039	G	A	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	nonsense	c.12273	p.W4091*	0.070	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				51	0	0.00	49	4	7.55
FSTL4	0	genome.wustl.edu	37	5	132537685	132537685	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	5	132537685	132537685	G	T	SNP	FSTL4	ENST00000265342	human	ensembl	74_37	-1	known	missense	c.1766	p.P589H	0.999	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal_dom,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL4	HGNC	ENSG00000053108	tier1	-	-	64	0	0.00	40	19	32.20
GALNT3	0	genome.wustl.edu	37	2	166605343	166605343	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	166605343	166605343	G	A	SNP	GALNT3	ENST00000392701	human	ensembl	74_37	-1	known	missense	c.1850	p.S617L	0.963	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT3	HGNC	ENSG00000115339	tier1	-	-	35	0	0.00	16	23	58.97
GDF2	0	genome.wustl.edu	37	10	48414221	48414221	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	10	48414221	48414221	C	T	SNP	GDF2	ENST00000249598	human	ensembl	74_37	-1	known	missense	c.647	p.R216Q	0.941	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF2	HGNC	ENSG00000128802	tier1	-	-	15	0	0.00	14	6	30.00
GK2	0	genome.wustl.edu	37	4	80329257	80329257	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	80329257	80329257	G	A	SNP	GK2	ENST00000358842	human	ensembl	74_37	-1	known	missense	c.98	p.A33V	0.998	pfam_Carb_kinase_FGGY_N,tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK2	HGNC	ENSG00000196475	tier1	rs140376639	-	50	0	0.00	38	15	28.30
GRAMD4	0	genome.wustl.edu	37	22	47057313	47057313	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	22	47057313	47057313	G	T	SNP	GRAMD4	ENST00000361034	human	ensembl	74_37	+1	known	missense	c.440	p.G147V	0.409	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240	tier1	-	-	58	0	0.00	54	7	11.48
GRIN3A	0	genome.wustl.edu	37	9	104449448	104449448	+	Nonsense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	9	104449448	104449448	G	T	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	nonsense	c.734	p.S245*	1.000	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785				32	0	0.00	32	2	5.88
HABP4	0	genome.wustl.edu	37	9	99252465	99252465	+	RNA	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	9	99252465	99252465	G	A	SNP	HABP4	ENST00000466976	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	HABP4	HGNC	ENSG00000130956	tier1	-	-	77	0	0.00	77	5	6.10
HAS3	0	genome.wustl.edu	37	16	69149029	69149029	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	16	69149029	69149029	A	G	SNP	HAS3	ENST00000306560	human	ensembl	74_37	+1	known	missense	c.1522	p.T508A	1.000	NULL	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS3	HGNC	ENSG00000103044				54	0	0.00	57	3	5.00
HAX1	0	genome.wustl.edu	37	1	154245866	154245866	+	Silent	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	154245866	154245866	A	G	SNP	HAX1	ENST00000483970	human	ensembl	74_37	+1	known	silent	c.108	p.E36	0.715	pirsf_HS1--assoc_X-1	pirsf_HS1--assoc_X-1	-	no_errors	HAX1	HGNC	ENSG00000143575				28	0	0.00	31	2	6.06
HECTD4	0	genome.wustl.edu	37	12	112747374	112747374	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	12	112747374	112747374	C	T	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.584	p.G195D	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064	tier1	-	-	53	0	0.00	34	11	24.44
HELZ2	0	genome.wustl.edu	37	20	62203546	62203546	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	20	62203546	62203546	C	T	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.193	p.A65T	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589	tier1	-	-	135	0	0.00	68	34	33.33
HERC6	0	genome.wustl.edu	37	4	89304465	89304465	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	89304465	89304465	G	T	SNP	HERC6	ENST00000264346	human	ensembl	74_37	+1	known	missense	c.292	p.A98S	0.723	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_RCC1/BLIP-II,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642				63	0	0.00	36	2	5.26
HINFP	0	genome.wustl.edu	37	11	119004769	119004769	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	119004769	119004769	G	T	SNP	HINFP	ENST00000527410	human	ensembl	74_37	+1	putative	missense	c.1177	p.A393S	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HINFP	HGNC	ENSG00000172273	tier1	-	-	76	0	0.00	61	4	6.15
HIVEP2	0	genome.wustl.edu	37	6	143095361	143095361	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	143095361	143095361	T	A	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	missense	c.515	p.Q172L	0.996	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				29	0	0.00	28	2	6.67
HMBOX1	0	genome.wustl.edu	37	8	28876382	28876382	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	8	28876382	28876382	G	T	SNP	HMBOX1	ENST00000444075	human	ensembl	74_37	+1	known	missense	c.803	p.R268L	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HMBOX1	HGNC	ENSG00000147421				57	0	0.00	32	2	5.88
HOXC11	0	genome.wustl.edu	37	12	54367154	54367154	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	12	54367154	54367154	G	T	SNP	HOXC11	ENST00000546378	human	ensembl	74_37	+1	known	missense	c.129	p.E43D	1.000	pfam_DUF3528	pfam_DUF3528,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXC11	HGNC	ENSG00000123388	tier1	-	-	33	0	0.00	30	4	11.76
HPS1	0	genome.wustl.edu	37	10	100190889	100190889	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	10	100190889	100190889	T	C	SNP	HPS1	ENST00000325103	human	ensembl	74_37	-1	known	missense	c.667	p.S223G	1.000	NULL	NULL	-	no_errors	HPS1	HGNC	ENSG00000107521	tier1	-	-	48	0	0.00	44	14	24.14
HSFY1P1	0	genome.wustl.edu	37	22	17308780	17308780	+	RNA	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	22	17308780	17308780	G	T	SNP	HSFY1P1	ENST00000425038	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	HSFY1P1	HGNC	ENSG00000229027	tier1	-	-	31	0	0.00	24	9	26.47
HTRA4	0	genome.wustl.edu	37	8	38840024	38840024	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	8	38840024	38840024	G	A	SNP	HTRA4	ENST00000302495	human	ensembl	74_37	+1	known	silent	c.1122	p.A374	0.245	NULL	pfam_Peptidase_S1,pfam_PDZ,pfam_Kazal_dom,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA4	HGNC	ENSG00000169495				34	0	0.00	33	2	5.71
IGDCC3	0	genome.wustl.edu	37	15	65623905	65623905	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	15	65623905	65623905	C	A	SNP	IGDCC3	ENST00000327987	human	ensembl	74_37	-1	known	missense	c.1241	p.R414M	1.000	pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGDCC3	HGNC	ENSG00000174498	tier1	-	-	32	0	0.00	17	13	43.33
IL18BP	0	genome.wustl.edu	37	11	71711506	71711506	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	71711506	71711506	C	G	SNP	IL18BP	ENST00000260049	human	ensembl	74_37	+1	known	missense	c.138	p.S46R	0.000	NULL	pfscan_Ig-like_dom	-	no_errors	IL18BP	HGNC	ENSG00000137496				47	0	0.00	43	4	8.51
INPP5A	0	genome.wustl.edu	37	10	134591286	134591286	+	Silent	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	10	134591286	134591286	G	T	SNP	INPP5A	ENST00000368594	human	ensembl	74_37	+1	known	silent	c.1089	p.R363	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5A	HGNC	ENSG00000068383				77	0	0.00	59	4	6.35
ITGA1	0	genome.wustl.edu	37	5	52145257	52145257	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	5	52145257	52145257	C	T	SNP	ITGA1	ENST00000282588	human	ensembl	74_37	+1	known	silent	c.120	p.S40	0.151	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949	tier1	-	-	50	0	0.00	38	7	15.56
ITGA3	0	genome.wustl.edu	37	17	48145589	48145589	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	48145589	48145589	G	A	SNP	ITGA3	ENST00000320031	human	ensembl	74_37	+1	known	missense	c.584	p.G195D	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA3	HGNC	ENSG00000005884				36	0	0.00	36	2	5.26
KCNN2	0	genome.wustl.edu	37	5	113831724	113831724	+	Missense_Mutation	SNP	A	A	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	5	113831724	113831724	A	C	SNP	KCNN2	ENST00000264773	human	ensembl	74_37	+1	known	missense	c.1585	p.S529R	1.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709	tier1	-	-	50	0	0.00	47	14	22.95
KCTD5	0	genome.wustl.edu	37	16	2749901	2749901	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	16	2749901	2749901	G	A	SNP	KCTD5	ENST00000301738	human	ensembl	74_37	+1	known	missense	c.533	p.G178D	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD5	HGNC	ENSG00000167977	tier1	-	-	39	0	0.00	44	4	8.33
KIAA0355	0	genome.wustl.edu	37	19	34819033	34819033	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	34819033	34819033	G	A	SNP	KIAA0355	ENST00000299505	human	ensembl	74_37	+1	known	missense	c.1081	p.A361T	0.781	NULL	NULL	-	no_errors	KIAA0355	HGNC	ENSG00000166398				33	0	0.00	44	3	6.38
KIAA1430	0	genome.wustl.edu	37	4	186085253	186085253	+	Silent	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	186085253	186085253	A	G	SNP	KIAA1430	ENST00000458385	human	ensembl	74_37	-1	novel	silent	c.1401	p.N467	0.367	NULL	NULL	-	no_errors	KIAA1430	HGNC	ENSG00000164323	tier1	-	-	38	0	0.00	46	4	8.00
KIAA1598	0	genome.wustl.edu	37	10	118704457	118704457	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	10	118704457	118704457	T	C	SNP	KIAA1598	ENST00000392903	human	ensembl	74_37	-1	known	missense	c.689	p.K230R	1.000	NULL	superfamily_Adenylate_cyclase-assoc_CAP_N	-	no_errors	KIAA1598	HGNC	ENSG00000187164	tier1	-	-	39	0	0.00	44	11	20.00
KIF13A	0	genome.wustl.edu	37	6	17799582	17799582	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	17799582	17799582	G	A	SNP	KIF13A	ENST00000259711	human	ensembl	74_37	-1	known	missense	c.2705	p.T902M	0.987	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177	tier1	-	-	47	0	0.00	40	6	13.04
KIT	0	genome.wustl.edu	37	4	55561936	55561936	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	55561936	55561936	T	A	SNP	KIT	ENST00000288135	human	ensembl	74_37	+1	known	missense	c.326	p.V109E	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404	tier1	-	-	57	0	0.00	54	4	6.90
KIT	0	genome.wustl.edu	37	4	55604601	55604601	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	55604601	55604601	T	C	SNP	KIT	ENST00000288135	human	ensembl	74_37	+1	known	missense	c.2809	p.S937P	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404	tier1	-	-	45	0	0.00	56	6	9.68
KLK15	0	genome.wustl.edu	37	19	51330175	51330175	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	51330175	51330175	G	A	SNP	KLK15	ENST00000598239	human	ensembl	74_37	-1	known	missense	c.440	p.S147F	0.389	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK15	HGNC	ENSG00000174562	tier1	-	-	37	0	0.00	27	13	32.50
KPNA1	0	genome.wustl.edu	37	3	122144782	122144782	+	RNA	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	3	122144782	122144782	C	T	SNP	KPNA1	ENST00000470904	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.054	-	-	-	no_errors	KPNA1	HGNC	ENSG00000114030	tier1	-	-	33	0	0.00	26	15	36.59
KRT20	0	genome.wustl.edu	37	17	39036471	39036471	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	39036471	39036471	C	T	SNP	KRT20	ENST00000167588	human	ensembl	74_37	-1	known	missense	c.673	p.V225M	1.000	pfam_IF,prints_Keratin_I	pfam_IF,prints_Keratin_I	-	no_errors	KRT20	HGNC	ENSG00000171431	tier1	-	-	37	0	0.00	36	4	10.00
KRTAP2-4	0	genome.wustl.edu	37	17	39221946	39221946	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	39221946	39221946	G	A	SNP	KRTAP2-4	ENST00000394015	human	ensembl	74_37	-1	known	missense	c.152	p.T51M	1.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP2-4	HGNC	ENSG00000213417	tier1	-	-	25	0	0.00	31	9	22.50
LACTB2	0	genome.wustl.edu	37	8	71574044	71574044	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	8	71574044	71574044	G	T	SNP	LACTB2	ENST00000276590	human	ensembl	74_37	-1	known	missense	c.211	p.Q71K	1.000	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	LACTB2	HGNC	ENSG00000147592	tier1	-	-	53	0	0.00	45	4	8.16
LEF1-AS1	0	genome.wustl.edu	37	4	109088687	109088687	+	RNA	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	109088687	109088687	G	T	SNP	LEF1-AS1	ENST00000436413	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LEF1-AS1	HGNC	ENSG00000232021	tier1	-	-	28	0	0.00	12	10	45.45
LINC00621	0	genome.wustl.edu	37	13	23490263	23490263	+	RNA	SNP	T	T	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	13	23490263	23490263	T	G	SNP	LINC00621	ENST00000577004	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00621	HGNC	ENSG00000262619	tier1	-	-	46	0	0.00	22	6	21.43
LMF2	0	genome.wustl.edu	37	22	50942261	50942261	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	22	50942261	50942261	C	T	SNP	LMF2	ENST00000474879	human	ensembl	74_37	-1	known	silent	c.1791	p.T597	0.007	NULL	pfam_LMF	-	no_errors	LMF2	HGNC	ENSG00000100258	tier1	rs199878629	-	96	0	0.00	82	18	18.00
LOC100287177	0	genome.wustl.edu	37	19	46145701	46145701	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	46145701	46145701	C	G	SNP	LOC100287177	ENST00000593161	human	ensembl	74_37	+1	putative	missense	c.242	p.A81G	0.001	NULL	NULL	-	no_errors	AC006132.1	Clone_based_vega_gene	ENSG00000267757	tier1	-	-	52	0	0.00	34	14	29.17
LOC101929232	0	genome.wustl.edu	37	15	29052119	29052119	+	RNA	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	15	29052119	29052119	G	A	SNP	LOC101929232	ENST00000562423	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-578F21.12	Clone_based_vega_gene	ENSG00000261377	tier1	-	-	87	0	0.00	63	15	19.23
LOC440157	0	genome.wustl.edu	37	14	19685493	19685493	+	RNA	SNP	C	C	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	14	19685493	19685493	C	A	SNP	LOC440157	ENST00000418499	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	AL589743.1	Clone_based_vega_gene	ENSG00000225210	tier1	-	-	74	0	0.00	67	6	8.22
LRP2	0	genome.wustl.edu	37	2	170177381	170177381	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	170177381	170177381	C	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	silent	c.93	p.A31	0.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	tier1	-	-	69	0	0.00	76	4	5.00
LRRIQ1	0	genome.wustl.edu	37	12	85492201	85492201	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	12	85492201	85492201	G	T	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	missense	c.2956	p.G986C	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	tier1	-	-	62	0	0.00	51	8	13.56
LTBP4	0	genome.wustl.edu	37	19	41117292	41117292	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	41117292	41117292	C	G	SNP	LTBP4	ENST00000308370	human	ensembl	74_37	+1	known	missense	c.2246	p.P749R	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	tier1	-	-	61	0	0.00	45	4	8.16
LY75	0	genome.wustl.edu	37	2	160661723	160661723	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	160661723	160661723	G	A	SNP	LY75	ENST00000263636	human	ensembl	74_37	-1	known	silent	c.5001	p.Y1667	1.000	NULL	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219				57	0	0.00	49	3	5.77
LYPLAL1	0	genome.wustl.edu	37	1	219347271	219347271	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	219347271	219347271	C	T	SNP	LYPLAL1	ENST00000366928	human	ensembl	74_37	+1	known	silent	c.39	p.I13	0.096	pfam_PLipase/COase/thioEstase	pfam_PLipase/COase/thioEstase,pfam_Dienelactn_hydro,pfam_Esterase_put	-	no_errors	LYPLAL1	HGNC	ENSG00000143353	tier1	-	-	63	0	0.00	23	13	36.11
MAMDC4	0	genome.wustl.edu	37	9	139751367	139751367	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	9	139751367	139751367	G	A	SNP	MAMDC4	ENST00000445819	human	ensembl	74_37	+1	known	missense	c.2083	p.V695M	0.039	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	MAMDC4	HGNC	ENSG00000177943	tier1	-	-	57	0	0.00	55	4	6.78
MAP2K5	0	genome.wustl.edu	37	15	67878257	67878257	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	15	67878257	67878257	C	T	SNP	MAP2K5	ENST00000178640	human	ensembl	74_37	+1	known	missense	c.352	p.H118Y	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K5	HGNC	ENSG00000137764	tier1	-	-	92	0	0.00	65	4	5.80
MAP9	0	genome.wustl.edu	37	4	156274462	156274462	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	156274462	156274462	C	T	SNP	MAP9	ENST00000311277	human	ensembl	74_37	-1	known	missense	c.1411	p.A471T	0.996	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114	tier1	-	-	49	0	0.00	31	10	24.39
MAST1	0	genome.wustl.edu	37	19	12975991	12975991	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	12975991	12975991	A	G	SNP	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	missense	c.1637	p.Q546R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	tier1	-	-	44	0	0.00	11	7	38.89
MBOAT2	0	genome.wustl.edu	37	2	9008633	9008633	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	9008633	9008633	G	A	SNP	MBOAT2	ENST00000305997	human	ensembl	74_37	-1	known	silent	c.930	p.D310	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MBOAT2	HGNC	ENSG00000143797	tier1	rs201477086	-	57	0	0.00	25	23	47.92
MC1R	0	genome.wustl.edu	37	16	89985940	89985940	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	16	89985940	89985940	G	T	SNP	MC1R	ENST00000555147	human	ensembl	74_37	+1	known	missense	c.274	p.V92L	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MSH_rcpt,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC1R	HGNC	ENSG00000258839	tier1	-	-	31	0	0.00	11	10	47.62
MCM3AP	0	genome.wustl.edu	37	21	47690475	47690475	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	21	47690475	47690475	T	C	SNP	MCM3AP	ENST00000291688	human	ensembl	74_37	-1	known	missense	c.2468	p.E823G	1.000	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	tier1	-	-	83	0	0.00	68	4	5.56
MCM6	0	genome.wustl.edu	37	2	136616981	136616981	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	136616981	136616981	A	G	SNP	MCM6	ENST00000264156	human	ensembl	74_37	-1	known	missense	c.1252	p.Y418H	1.000	pfam_MCM_DNA-dep_ATPase,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM6,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM6	HGNC	ENSG00000076003	tier1	-	-	61	0	0.00	26	3	10.34
MED24	0	genome.wustl.edu	37	17	38187474	38187474	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	38187474	38187474	G	A	SNP	MED24	ENST00000394128	human	ensembl	74_37	-1	known	silent	c.1092	p.L364	0.948	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838	tier1	-	-	54	0	0.00	53	20	27.40
MEGF6	0	genome.wustl.edu	37	1	3431195	3431195	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	3431195	3431195	T	C	SNP	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	missense	c.772	p.R258G	0.168	smart_EG-like_dom,smart_EGF-like_Ca-bd_dom	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591				24	0	0.00	23	3	11.54
MFSD6	0	genome.wustl.edu	37	2	191300945	191300945	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	191300945	191300945	A	T	SNP	MFSD6	ENST00000281416	human	ensembl	74_37	+1	known	missense	c.190	p.I64L	0.852	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6	HGNC	ENSG00000151690	tier1	-	-	27	0	0.00	15	19	55.88
MFSD6L	0	genome.wustl.edu	37	17	8702343	8702343	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	8702343	8702343	C	T	SNP	MFSD6L	ENST00000329805	human	ensembl	74_37	-1	known	silent	c.96	p.P32	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6L	HGNC	ENSG00000185156				42	0	0.00	29	9	23.68
MOGAT3	0	genome.wustl.edu	37	7	100843572	100843572	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	100843572	100843572	C	T	SNP	MOGAT3	ENST00000440203	human	ensembl	74_37	-1	known	silent	c.231	p.S77	0.000	pfam_DAGAT	pfam_DAGAT	-	no_errors	MOGAT3	HGNC	ENSG00000106384	tier1	-	-	35	0	0.00	48	5	9.43
MT-CO1	0	genome.wustl.edu	37	MT	6075	6075	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	MT	6075	6075	G	A	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.172	p.V58I	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804	tier1	-	-	59	0	0.00	17	2	10.53
MT-CO1	0	genome.wustl.edu	37	MT	6079	6079	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	MT	6079	6079	C	A	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.176	p.T59K	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804	tier1	-	-	57	0	0.00	16	2	11.11
MT-ND5	0	genome.wustl.edu	37	MT	13498	13498	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	MT	13498	13498	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	missense	c.1162	p.G388S	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786	tier1	-	-	23	0	0.00	3	5	62.50
MT-ND5	0	genome.wustl.edu	37	MT	13573	13573	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	MT	13573	13573	C	T	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	missense	c.1237	p.L413F	NULL	tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786	tier1	rs28462226	-	26	0	0.00	6	2	25.00
MT-ND5	0	genome.wustl.edu	37	MT	14059	14059	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	MT	14059	14059	A	T	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	missense	c.1723	p.I575F	NULL	pfam_NADH_DH_su5_C	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786	tier1	-	-	31	0	0.00	6	2	25.00
MUC16	0	genome.wustl.edu	37	19	9047103	9047103	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	9047103	9047103	A	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.34528	p.S11510P	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	71	0	0.00	42	9	17.65
MUC16	0	genome.wustl.edu	37	19	9049508	9049508	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	9049508	9049508	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.32123	p.A10708V	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	73	0	0.00	69	4	5.48
MVB12B	0	genome.wustl.edu	37	9	129266836	129266836	+	RNA	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	9	129266836	129266836	G	T	SNP	MVB12B	ENST00000485886	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	MVB12B	HGNC	ENSG00000196814	tier1	-	-	60	0	0.00	54	26	32.50
MXRA5	0	genome.wustl.edu	37	X	3241682	3241682	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	X	3241682	3241682	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.2044	p.R682C	0.691	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825	tier1	-	-	33	0	0.00	11	16	57.14
MYCBP2	0	genome.wustl.edu	37	13	77672299	77672299	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	13	77672299	77672299	G	A	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.8990	p.T2997I	0.997	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	tier1	-	-	75	0	0.00	56	4	6.67
MYH13	0	genome.wustl.edu	37	17	10212976	10212976	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	10212976	10212976	G	A	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	missense	c.4828	p.R1610C	0.997	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				34	0	0.00	25	2	7.41
MYLK	0	genome.wustl.edu	37	3	123375992	123375992	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	3	123375992	123375992	C	T	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	silent	c.4269	p.T1423	0.000	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534	tier1	-	-	63	0	0.00	42	23	35.38
NFS1	0	genome.wustl.edu	37	20	34287270	34287270	+	RNA	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	20	34287270	34287270	G	T	SNP	NFS1	ENST00000421540	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NFS1	HGNC	ENSG00000244005	tier1	-	-	21	0	0.00	22	6	20.69
NID1	0	genome.wustl.edu	37	1	236187408	236187408	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	236187408	236187408	C	G	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	missense	c.2090	p.C697S	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	tier1	-	-	46	0	0.00	27	10	27.03
NOXRED1	0	genome.wustl.edu	37	14	77861025	77861025	+	Silent	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	14	77861025	77861025	G	T	SNP	NOXRED1	ENST00000380835	human	ensembl	74_37	-1	known	silent	c.1029	p.I343	0.595	NULL	NULL	-	no_errors	NOXRED1	HGNC	ENSG00000165555	tier1	-	-	77	0	0.00	67	4	5.63
NRXN1	0	genome.wustl.edu	37	2	50149340	50149340	+	Missense_Mutation	SNP	T	T	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	50149340	50149340	T	G	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	missense	c.4242	p.E1414D	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	tier1	-	-	41	0	0.00	30	9	23.08
NXPH4	0	genome.wustl.edu	37	12	57610780	57610780	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	12	57610780	57610780	T	A	SNP	NXPH4	ENST00000349394	human	ensembl	74_37	+1	known	missense	c.28	p.L10M	0.935	pirsf_Neurexophilin	pfam_NXPH/NXPE,pirsf_Neurexophilin	-	no_errors	NXPH4	HGNC	ENSG00000182379	tier1	-	-	43	0	0.00	22	12	35.29
OBSCN	0	genome.wustl.edu	37	1	228404905	228404905	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	228404905	228404905	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.2569	p.A857T	0.029	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				78	0	0.00	71	4	5.33
OBSL1	0	genome.wustl.edu	37	2	220432568	220432568	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	220432568	220432568	G	A	SNP	OBSL1	ENST00000404537	human	ensembl	74_37	-1	known	missense	c.1406	p.P469L	0.047	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006	tier1	-	-	62	0	0.00	29	40	57.97
OR10J1	0	genome.wustl.edu	37	1	159410362	159410362	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	159410362	159410362	C	T	SNP	OR10J1	ENST00000423932	human	ensembl	74_37	+1	known	missense	c.814	p.P272S	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10J1	HGNC	ENSG00000196184	tier1	-	-	46	0	0.00	42	4	8.70
OR11H12	0	genome.wustl.edu	37	14	19377744	19377744	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	14	19377744	19377744	G	A	SNP	OR11H12	ENST00000550708	human	ensembl	74_37	+1	known	missense	c.151	p.A51T	0.131	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR11H12	HGNC	ENSG00000257115	tier1	-	-	132	0	0.00	67	16	19.28
OR1N1	0	genome.wustl.edu	37	9	125289092	125289092	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	9	125289092	125289092	T	C	SNP	OR1N1	ENST00000304880	human	ensembl	74_37	-1	known	missense	c.481	p.M161V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1N1	HGNC	ENSG00000171505	tier1	-	-	29	0	0.00	28	4	12.50
OR5I1	0	genome.wustl.edu	37	11	55703643	55703643	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	55703643	55703643	G	T	SNP	OR5I1	ENST00000301532	human	ensembl	74_37	-1	known	missense	c.234	p.D78E	0.024	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5I1	HGNC	ENSG00000167825	tier1	-	-	28	0	0.00	17	3	15.00
OR6C68	0	genome.wustl.edu	37	12	55886563	55886563	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	12	55886563	55886563	G	T	SNP	OR6C68	ENST00000379662	human	ensembl	74_37	+1	known	missense	c.417	p.M139I	1.000	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR6C68	HGNC	ENSG00000205327	tier1	-	-	53	0	0.00	68	4	5.56
ORC3	0	genome.wustl.edu	37	6	88313147	88313147	+	Nonsense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	88313147	88313147	G	T	SNP	ORC3	ENST00000257789	human	ensembl	74_37	+1	known	nonsense	c.223	p.E75*	0.997	pfam_ORC3	pfam_ORC3	-	no_errors	ORC3	HGNC	ENSG00000135336				46	0	0.00	35	2	5.41
OTOG	0	genome.wustl.edu	37	11	17667382	17667382	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	17667382	17667382	G	A	SNP	OTOG	ENST00000399391	human	ensembl	74_37	+1	known	missense	c.8669	p.R2890H	1.000	smart_Cys_knot_C,pfscan_Cys_knot_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_AbfB,pfam_TIL_dom,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom	-	no_errors	OTOG	HGNC	ENSG00000188162	tier1	-	-	17	0	0.00	15	12	44.44
OTUB2	0	genome.wustl.edu	37	14	94503806	94503806	+	Nonsense_Mutation	SNP	C	C	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	14	94503806	94503806	C	A	SNP	OTUB2	ENST00000203664	human	ensembl	74_37	+1	known	nonsense	c.84	p.Y28*	1.000	pfam_Peptidase_C65_otubain,pirsf_Ubiquitin_thioesterase_Otubain	pfam_Peptidase_C65_otubain,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU	-	no_errors	OTUB2	HGNC	ENSG00000089723	tier1	-	-	51	0	0.00	30	9	23.08
P2RY6	0	genome.wustl.edu	37	11	73007970	73007970	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	73007970	73007970	A	T	SNP	P2RY6	ENST00000349767	human	ensembl	74_37	+1	known	missense	c.407	p.H136L	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y3_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y6_rcpt,prints_GPCR_Rhodpsn,prints_P2Y3_rcpt,prints_Protea_act_rcpt	-	no_errors	P2RY6	HGNC	ENSG00000171631				36	0	0.00	32	4	11.11
PARN	0	genome.wustl.edu	37	16	14540882	14540882	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	16	14540882	14540882	G	T	SNP	PARN	ENST00000437198	human	ensembl	74_37	-1	known	missense	c.1727	p.A576D	0.034	NULL	pfam_RNase_CAF1,pfam_PolyA-riboNase_RNA_binding,pfam_R3H_ss-bd,superfamily_RNaseH-like_dom,pfscan_R3H_ss-bd	-	no_errors	PARN	HGNC	ENSG00000140694	tier1	-	-	61	0	0.00	52	4	7.14
PAX4	0	genome.wustl.edu	37	7	127251732	127251733	+	Splice_Site	INS	-	-	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	127251732	127251733	-	A	INS	PAX4	ENST00000341640	human	ensembl	74_37	-1	known	splice_site_ins	c.748-3_748-2	e8-2	0.745:0.624	-	-	-	no_errors	PAX4	HGNC	ENSG00000106331	tier1			16	0	0.00	15	4	21.05
PAX4	0	genome.wustl.edu	37	7	127255001	127255001	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	127255001	127255001	A	G	SNP	PAX4	ENST00000341640	human	ensembl	74_37	-1	known	missense	c.269	p.L90P	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX4	HGNC	ENSG00000106331				24	0	0.00	34	4	10.53
PCDH11X	0	genome.wustl.edu	37	X	91090519	91090519	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	X	91090519	91090519	G	T	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	missense	c.16	p.G6W	1.000	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	tier1	-	-	52	0	0.00	30	36	54.55
PCDH15	0	genome.wustl.edu	37	10	55912910	55912910	+	Silent	SNP	A	A	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	10	55912910	55912910	A	C	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	silent	c.1734	p.T578	0.861	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	tier1	-	-	49	0	0.00	21	6	22.22
PCDHA1	0	genome.wustl.edu	37	5	140167566	140167566	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	5	140167566	140167566	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	missense	c.1691	p.A564V	0.003	superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	tier1	-	-	148	0	0.00	102	29	22.14
PCDHA6	0	genome.wustl.edu	37	5	140207737	140207737	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	5	140207737	140207737	C	T	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	missense	c.61	p.L21F	0.616	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842	tier1	-	-	66	0	0.00	58	4	6.45
PCNX	0	genome.wustl.edu	37	14	71571966	71571966	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	14	71571966	71571966	G	T	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.6110	p.C2037F	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731	tier1	-	-	69	0	0.00	55	4	6.78
PCOLCE2	0	genome.wustl.edu	37	3	142606566	142606566	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	3	142606566	142606566	C	T	SNP	PCOLCE2	ENST00000295992	human	ensembl	74_37	-1	known	missense	c.137	p.S46N	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Netrin_module_non-TIMP,superfamily_CUB_dom,superfamily_TIMP-like_OB-fold,smart_CUB_dom,smart_Netrin_module_non-TIMP,pfscan_CUB_dom,pfscan_Netrin_domain	-	no_errors	PCOLCE2	HGNC	ENSG00000163710				18	0	0.00	27	2	6.90
PGC	0	genome.wustl.edu	37	6	41710097	41710097	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	41710097	41710097	G	T	SNP	PGC	ENST00000373025	human	ensembl	74_37	-1	known	missense	c.578	p.T193N	0.997	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	PGC	HGNC	ENSG00000096088				27	0	0.00	37	2	5.13
PIP4K2B	0	genome.wustl.edu	37	17	36927513	36927513	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	36927513	36927513	G	T	SNP	PIP4K2B	ENST00000269554	human	ensembl	74_37	-1	known	missense	c.820	p.L274M	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2B	HGNC	ENSG00000141720	tier1	-	-	43	0	0.00	60	4	6.25
PLEKHH2	0	genome.wustl.edu	37	2	43965591	43965591	+	Nonsense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	43965591	43965591	G	T	SNP	PLEKHH2	ENST00000282406	human	ensembl	74_37	+1	known	nonsense	c.3055	p.E1019*	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527				16	0	0.00	29	3	9.38
PLEKHO1	0	genome.wustl.edu	37	1	150131624	150131624	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	150131624	150131624	T	C	SNP	PLEKHO1	ENST00000025469	human	ensembl	74_37	+1	known	missense	c.1034	p.L345P	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHO1	HGNC	ENSG00000023902	tier1	-	-	50	0	0.00	37	4	9.76
PON3	0	genome.wustl.edu	37	7	94991782	94991782	+	Missense_Mutation	SNP	T	T	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	94991782	94991782	T	G	SNP	PON3	ENST00000265627	human	ensembl	74_37	-1	known	missense	c.798	p.L266F	0.360	pfam_SGL	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase2	-	no_errors	PON3	HGNC	ENSG00000105852	tier1	-	-	48	0	0.00	32	16	33.33
POT1	0	genome.wustl.edu	37	7	124503425	124503425	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	124503425	124503425	G	T	SNP	POT1	ENST00000357628	human	ensembl	74_37	-1	known	missense	c.525	p.D175E	1.000	superfamily_NA-bd_OB-fold	pfam_Telomer_end-bd_POT1/Cdc13,superfamily_NA-bd_OB-fold,smart_Telomer_end-bd_POT1/Cdc13	-	no_errors	POT1	HGNC	ENSG00000128513				18	0	0.00	34	2	5.56
PPP1R21	0	genome.wustl.edu	37	2	48685277	48685279	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	48685277	48685279	TCT	-	DEL	PPP1R21	ENST00000294952	human	ensembl	74_37	+1	known	in_frame_del	c.286_288	p.S98in_frame_del	1.000:1.000:1.000	pfam_Unchr_KLRAQ/TTKRSYEDQ_N	pfam_KLRAQ/TTKRSYEDQ_C,pfam_Unchr_KLRAQ/TTKRSYEDQ_N,superfamily_Ferritin-like_SF	-	no_errors	PPP1R21	HGNC	ENSG00000162869	tier1			24	0	0.00	17	5	22.73
PPP1R3C	0	genome.wustl.edu	37	10	93390347	93390347	+	Silent	SNP	C	C	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	10	93390347	93390347	C	A	SNP	PPP1R3C	ENST00000238994	human	ensembl	74_37	-1	known	silent	c.291	p.A97	0.004	pirsf_Pase-1_Glycogen_target-su_met	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3C	HGNC	ENSG00000119938	tier1	-	-	57	0	0.00	41	15	26.79
PPP6R1	0	genome.wustl.edu	37	19	55743292	55743292	+	Silent	SNP	T	T	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	55743292	55743292	T	G	SNP	PPP6R1	ENST00000412770	human	ensembl	74_37	-1	known	silent	c.2184	p.R728	0.000	NULL	pfam_SAPS,superfamily_ARM-type_fold	-	no_errors	PPP6R1	HGNC	ENSG00000105063	tier1	-	-	70	0	0.00	65	29	30.85
PRORSD1P	0	genome.wustl.edu	37	2	55511335	55511335	+	RNA	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	55511335	55511335	C	T	SNP	PRORSD1P	ENST00000563365	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	PRORSD1P	HGNC	ENSG00000162997	tier1	-	-	29	0	0.00	51	4	7.27
PRR14L	0	genome.wustl.edu	37	22	32110959	32110959	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	22	32110959	32110959	C	T	SNP	PRR14L	ENST00000397493	human	ensembl	74_37	-1	known	missense	c.2866	p.V956I	0.000	NULL	NULL	-	no_errors	PRR14L	HGNC	ENSG00000183530	tier1	-	-	49	0	0.00	36	8	18.18
PRRG2	0	genome.wustl.edu	37	19	50086513	50086513	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	50086513	50086513	G	A	SNP	PRRG2	ENST00000246794	human	ensembl	74_37	+1	known	missense	c.37	p.A13T	0.975	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_GLA_domain	-	no_errors	PRRG2	HGNC	ENSG00000126460	tier1	-	-	64	0	0.00	70	4	5.41
PSG1	0	genome.wustl.edu	37	19	43373045	43373045	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	43373045	43373045	G	A	SNP	PSG1	ENST00000312439	human	ensembl	74_37	-1	known	missense	c.851	p.P284L	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG1	HGNC	ENSG00000231924	tier1	-	-	140	0	0.00	116	29	20.00
PSG3	0	genome.wustl.edu	37	19	43236999	43236999	+	Nonsense_Mutation	SNP	C	C	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	43236999	43236999	C	A	SNP	PSG3	ENST00000327495	human	ensembl	74_37	-1	known	nonsense	c.646	p.E216*	0.933	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG3	HGNC	ENSG00000221826	tier1	-	-	214	0	0.00	160	64	28.57
PSMC1	0	genome.wustl.edu	37	14	90736682	90736682	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	14	90736682	90736682	G	T	SNP	PSMC1	ENST00000261303	human	ensembl	74_37	+1	known	missense	c.1174	p.G392C	1.000	superfamily_P-loop_NTPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DUF815,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC1	HGNC	ENSG00000100764				36	0	0.00	38	4	9.52
PTCHD1	0	genome.wustl.edu	37	X	23410816	23410816	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	X	23410816	23410816	C	T	SNP	PTCHD1	ENST00000379361	human	ensembl	74_37	+1	known	missense	c.1181	p.T394M	1.000	pfam_Patched,pfscan_SSD	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	tier1	-	-	21	0	0.00	13	19	59.38
PTCHD4	0	genome.wustl.edu	37	6	48036096	48036096	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	48036096	48036096	C	A	SNP	PTCHD4	ENST00000339488	human	ensembl	74_37	-1	known	missense	c.296	p.S99I	1.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD4	HGNC	ENSG00000244694	tier1	-	-	75	0	0.00	42	19	31.15
PTPRA	0	genome.wustl.edu	37	20	3003439	3003439	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	20	3003439	3003439	G	A	SNP	PTPRA	ENST00000425918	human	ensembl	74_37	+1	known	missense	c.1466	p.R489Q	1.000	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRA	HGNC	ENSG00000132670				30	0	0.00	27	3	10.00
PTPRD	0	genome.wustl.edu	37	9	8518133	8518133	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	9	8518133	8518133	C	A	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	missense	c.1258	p.A420S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707	tier1	-	-	23	0	0.00	15	8	34.78
PTPRS	0	genome.wustl.edu	37	19	5244269	5244269	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	5244269	5244269	C	T	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.1216	p.V406I	0.969	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426	tier1	-	-	74	0	0.00	60	4	6.25
PTPRS	0	genome.wustl.edu	37	19	5214445	5214445	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	5214445	5214445	C	T	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.4544	p.G1515D	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				54	0	0.00	44	3	6.38
PVRL4	0	genome.wustl.edu	37	1	161042504	161042504	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	161042504	161042504	C	T	SNP	PVRL4	ENST00000368012	human	ensembl	74_37	-1	known	missense	c.1480	p.A494T	1.000	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PVRL4	HGNC	ENSG00000143217				52	0	0.00	41	3	6.82
RAG1	0	genome.wustl.edu	37	11	36595270	36595270	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	36595270	36595270	G	T	SNP	RAG1	ENST00000299440	human	ensembl	74_37	+1	known	missense	c.416	p.G139V	0.019	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349	tier1	rs140648865	-	35	0	0.00	29	4	11.76
RBM33	0	genome.wustl.edu	37	7	155532610	155532610	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	155532610	155532610	C	T	SNP	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	missense	c.1939	p.P647S	0.992	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863	tier1	-	-	37	0	0.00	30	13	30.23
RBMXL2	0	genome.wustl.edu	37	11	7110479	7110479	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	7110479	7110479	G	A	SNP	RBMXL2	ENST00000306904	human	ensembl	74_37	+1	known	missense	c.128	p.R43Q	0.998	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL2	HGNC	ENSG00000170748	tier1	-	-	57	0	0.00	47	27	36.49
RBMXL3	0	genome.wustl.edu	37	X	114424865	114424865	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	X	114424865	114424865	C	T	SNP	RBMXL3	ENST00000424776	human	ensembl	74_37	+1	known	silent	c.861	p.R287	0.057	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL3	HGNC	ENSG00000175718	tier1	rs199932185	-	25	0	0.00	8	28	77.78
RELL2	0	genome.wustl.edu	37	5	141019164	141019164	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	5	141019164	141019164	G	A	SNP	RELL2	ENST00000297164	human	ensembl	74_37	+1	known	missense	c.451	p.E151K	1.000	NULL	pfam_TNF_rcpt_RELT	-	no_errors	RELL2	HGNC	ENSG00000164620	tier1	-	-	79	0	0.00	46	6	11.54
RGS12	0	genome.wustl.edu	37	4	3418813	3418813	+	Frame_Shift_Del	DEL	A	A	-			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	3418813	3418813	A	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.2601	p.K869fs	0.018	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788	tier1			54	0	0.00	33	2	5.71
RGS3	0	genome.wustl.edu	37	9	116259657	116259657	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	9	116259657	116259657	G	A	SNP	RGS3	ENST00000350696	human	ensembl	74_37	+1	known	missense	c.814	p.A272T	1.000	NULL	pfam_RGS_dom,pfam_C2_dom,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_dom,superfamily_PDZ,smart_C2_dom,smart_PDZ,smart_Regulat_G_prot_signal_superfam,pfscan_C2_dom,pfscan_PDZ,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS3	HGNC	ENSG00000138835	tier1	-	-	66	0	0.00	48	4	7.69
RND3	0	genome.wustl.edu	37	2	151331459	151331459	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	151331459	151331459	G	T	SNP	RND3	ENST00000263895	human	ensembl	74_37	-1	known	missense	c.278	p.P93H	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND3	HGNC	ENSG00000115963	tier1	-	-	64	0	0.00	53	4	7.02
ROR2	0	genome.wustl.edu	37	9	94519695	94519695	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	9	94519695	94519695	G	A	SNP	ROR2	ENST00000375708	human	ensembl	74_37	-1	known	missense	c.322	p.R108W	0.808	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	ROR2	HGNC	ENSG00000169071				47	0	0.00	48	4	7.69
RPL23AP53	0	genome.wustl.edu	37	8	163654	163654	+	RNA	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	8	163654	163654	C	T	SNP	RPL23AP53	ENST00000606975	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL23AP53	HGNC	ENSG00000223508				128	0	0.00	90	13	12.62
RPTOR	0	genome.wustl.edu	37	17	78704474	78704474	+	Nonsense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	78704474	78704474	C	T	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	nonsense	c.622	p.Q208*	1.000	NULL	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	tier1	-	-	35	0	0.00	37	7	15.91
RRM1	0	genome.wustl.edu	37	11	4142839	4142839	+	Silent	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	4142839	4142839	T	C	SNP	RRM1	ENST00000300738	human	ensembl	74_37	+1	known	silent	c.882	p.P294	1.000	pfam_RNR_lg_C,prints_RNR_lg_C,tigrfam_NrdE_NrdA	pfam_RNR_lg_C,pfam_RNR_lsu_N,pfam_ATP-cone,superfamily_RNR_R1-su_N,pfscan_ATP-cone,prints_RNR_lg_C,tigrfam_NrdE_NrdA	-	no_errors	RRM1	HGNC	ENSG00000167325	tier1	-	-	40	0	0.00	55	4	6.78
RXFP1	0	genome.wustl.edu	37	4	159538284	159538284	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	159538284	159538284	G	T	SNP	RXFP1	ENST00000307765	human	ensembl	74_37	+1	known	missense	c.682	p.V228F	0.988	NULL	pfam_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_7TM,prints_Relaxin_rcpt,prints_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam	-	no_errors	RXFP1	HGNC	ENSG00000171509	tier1	-	-	52	0	0.00	68	4	5.56
SCNN1G	0	genome.wustl.edu	37	16	23197645	23197645	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	16	23197645	23197645	C	T	SNP	SCNN1G	ENST00000300061	human	ensembl	74_37	+1	known	missense	c.53	p.T18M	0.002	NULL	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1G	HGNC	ENSG00000166828				30	0	0.00	25	3	10.71
SEC23A	0	genome.wustl.edu	37	14	39536423	39536423	+	Missense_Mutation	SNP	A	A	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	14	39536423	39536423	A	T	SNP	SEC23A	ENST00000307712	human	ensembl	74_37	-1	known	missense	c.1181	p.M394K	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23A	HGNC	ENSG00000100934	tier1	-	-	81	0	0.00	55	4	6.78
SEC31B	0	genome.wustl.edu	37	10	102249885	102249885	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	10	102249885	102249885	G	A	SNP	SEC31B	ENST00000370345	human	ensembl	74_37	-1	known	missense	c.2845	p.R949C	0.002	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826	tier1	rs146812157	-	67	0	0.00	30	19	38.78
SERPINB5	0	genome.wustl.edu	37	18	61160254	61160254	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	18	61160254	61160254	G	A	SNP	SERPINB5	ENST00000382771	human	ensembl	74_37	+1	known	missense	c.493	p.A165T	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom,prints_Serpin_B9/Maspin	-	no_errors	SERPINB5	HGNC	ENSG00000206075				55	0	0.00	37	2	5.13
SETBP1	0	genome.wustl.edu	37	18	42531877	42531877	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	18	42531877	42531877	G	A	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	missense	c.2572	p.E858K	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217	tier1	-	-	41	0	0.00	37	7	15.56
SGCZ	0	genome.wustl.edu	37	8	13947970	13947970	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	8	13947970	13947970	G	T	SNP	SGCZ	ENST00000382080	human	ensembl	74_37	-1	known	missense	c.921	p.N307K	0.999	NULL	pfam_Sarcoglycan	-	no_errors	SGCZ	HGNC	ENSG00000185053	tier1	-	-	44	0	0.00	35	4	10.26
SIGLEC12	0	genome.wustl.edu	37	19	52003613	52003613	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	52003613	52003613	C	T	SNP	SIGLEC12	ENST00000598614	human	ensembl	74_37	-1	putative	silent	c.15	p.L5	0.374	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC12	HGNC	ENSG00000254521	tier1	-	-	15	0	0.00	15	4	20.00
SIGLEC6	0	genome.wustl.edu	37	19	52033988	52033988	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	52033988	52033988	G	A	SNP	SIGLEC6	ENST00000425629	human	ensembl	74_37	-1	known	missense	c.653	p.T218M	0.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC6	HGNC	ENSG00000105492	tier1	-	-	71	0	0.00	36	25	40.98
SLAMF1	0	genome.wustl.edu	37	1	160593951	160593951	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	160593951	160593951	G	A	SNP	SLAMF1	ENST00000302035	human	ensembl	74_37	-1	known	missense	c.725	p.A242V	0.000	NULL	pfam_Sig_lymph_act_molc_N,pfscan_Ig-like_dom	-	no_errors	SLAMF1	HGNC	ENSG00000117090				46	0	0.00	50	3	5.66
SLC22A13	0	genome.wustl.edu	37	3	38316550	38316550	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	3	38316550	38316550	G	A	SNP	SLC22A13	ENST00000450935	human	ensembl	74_37	+1	known	missense	c.430	p.A144T	0.435	NULL	NULL	-	no_errors	SLC22A13	HGNC	ENSG00000172940				50	0	0.00	35	2	5.41
SLC25A17	0	genome.wustl.edu	37	22	41173083	41173083	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	22	41173083	41173083	C	T	SNP	SLC25A17	ENST00000435456	human	ensembl	74_37	-1	known	silent	c.654	p.T218	0.003	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A17	HGNC	ENSG00000100372	tier1	-	-	34	0	0.00	21	12	36.36
SLC4A7	0	genome.wustl.edu	37	3	27463270	27463270	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	3	27463270	27463270	C	G	SNP	SLC4A7	ENST00000454389	human	ensembl	74_37	-1	known	missense	c.1267	p.V423L	1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867				24	0	0.00	16	7	30.43
SLC5A11	0	genome.wustl.edu	37	16	24902396	24902396	+	Splice_Site	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	16	24902396	24902396	G	T	SNP	SLC5A11	ENST00000347898	human	ensembl	74_37	+1	known	splice_site	c.870+1	e8+1	1.000	-	-	-	no_errors	SLC5A11	HGNC	ENSG00000158865	tier1	-	-	19	0	0.00	10	3	23.08
SLC6A6	0	genome.wustl.edu	37	3	14508095	14508095	+	Silent	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	3	14508095	14508095	G	T	SNP	SLC6A6	ENST00000360861	human	ensembl	74_37	+1	known	silent	c.804	p.P268	0.820	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_taurine	-	no_errors	SLC6A6	HGNC	ENSG00000131389	tier1	-	-	24	0	0.00	28	4	12.50
SLCO3A1	0	genome.wustl.edu	37	15	92706285	92706285	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	15	92706285	92706285	G	A	SNP	SLCO3A1	ENST00000318445	human	ensembl	74_37	+1	known	missense	c.2053	p.A685T	0.973	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				40	0	0.00	38	2	5.00
SMYD1	0	genome.wustl.edu	37	2	88387576	88387576	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	88387576	88387576	C	T	SNP	SMYD1	ENST00000419482	human	ensembl	74_37	+1	known	silent	c.510	p.I170	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593				76	0	0.00	67	4	5.63
SNRPN	0	genome.wustl.edu	37	15	25223558	25223558	+	Silent	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	15	25223558	25223558	A	G	SNP	SNRPN	ENST00000444203	human	ensembl	74_37	+1	known	silent	c.702	p.P234	0.998	pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPN	HGNC	ENSG00000128739	tier1	-	-	26	0	0.00	22	4	15.38
SNX13	0	genome.wustl.edu	37	7	17836453	17836453	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	17836453	17836453	G	A	SNP	SNX13	ENST00000428135	human	ensembl	74_37	-1	known	missense	c.2623	p.P875S	1.000	pfam_Sorting_nexin_C	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX13	HGNC	ENSG00000071189				32	0	0.00	54	4	6.90
SOGA3	0	genome.wustl.edu	37	6	127797352	127797352	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	127797352	127797352	C	T	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	missense	c.1819	p.E607K	1.000	pfam_SOGA	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338	tier1	-	-	65	0	0.00	44	24	35.29
SPATA31D1	0	genome.wustl.edu	37	9	84608354	84608354	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	9	84608354	84608354	C	A	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	missense	c.2969	p.S990Y	0.006	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929	tier1	-	-	100	0	0.00	60	35	36.84
SPEF2	0	genome.wustl.edu	37	5	35793299	35793299	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	5	35793299	35793299	G	A	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	silent	c.4593	p.E1531	0.504	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	tier1	-	-	45	0	0.00	28	17	37.78
SPN	0	genome.wustl.edu	37	16	29676104	29676104	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	16	29676104	29676104	G	T	SNP	SPN	ENST00000360121	human	ensembl	74_37	+1	known	missense	c.1055	p.R352L	0.111	NULL	NULL	-	no_errors	SPN	HGNC	ENSG00000197471	tier1	-	-	29	0	0.00	18	10	35.71
SPTA1	0	genome.wustl.edu	37	1	158639308	158639308	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	158639308	158639308	G	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.1723	p.R575C	0.852	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				52	0	0.00	52	3	5.36
SRCAP	0	genome.wustl.edu	37	16	30740303	30740303	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	16	30740303	30740303	A	G	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.5675	p.K1892R	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				66	0	0.00	41	4	8.89
SREK1	0	genome.wustl.edu	37	5	65475786	65475786	+	RNA	SNP	T	T	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	5	65475786	65475786	T	A	SNP	SREK1	ENST00000284041	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	SREK1	HGNC	ENSG00000153914	tier1	-	-	30	0	0.00	26	3	10.00
SSH1	0	genome.wustl.edu	37	12	109186396	109186396	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	12	109186396	109186396	G	T	SNP	SSH1	ENST00000326495	human	ensembl	74_37	-1	known	missense	c.1559	p.P520H	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH1	HGNC	ENSG00000084112				77	0	0.00	71	4	5.26
STAT3	0	genome.wustl.edu	37	17	40483492	40483492	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	40483492	40483492	G	A	SNP	STAT3	ENST00000264657	human	ensembl	74_37	-1	known	silent	c.1107	p.D369	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT3	HGNC	ENSG00000168610	tier1	-	-	48	0	0.00	45	10	18.18
STAT4	0	genome.wustl.edu	37	2	192011340	192011340	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	192011340	192011340	T	C	SNP	STAT4	ENST00000358470	human	ensembl	74_37	-1	known	missense	c.272	p.Q91R	1.000	pfam_STAT_TF_prot_interaction,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378	tier1	-	-	68	0	0.00	73	4	5.13
STRN4	0	genome.wustl.edu	37	19	47228734	47228734	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	47228734	47228734	T	C	SNP	STRN4	ENST00000391910	human	ensembl	74_37	-1	known	missense	c.1441	p.K481E	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Striatin_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN4	HGNC	ENSG00000090372				75	0	0.00	53	4	7.02
STT3A	0	genome.wustl.edu	37	11	125484062	125484062	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	125484062	125484062	C	T	SNP	STT3A	ENST00000392708	human	ensembl	74_37	+1	known	silent	c.1635	p.N545	1.000	pfam_Oligo_trans_STT3	pfam_Oligo_trans_STT3	-	no_errors	STT3A	HGNC	ENSG00000134910	tier1	-	-	60	0	0.00	54	17	23.94
STT3B	0	genome.wustl.edu	37	3	31656660	31656660	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	3	31656660	31656660	A	G	SNP	STT3B	ENST00000295770	human	ensembl	74_37	+1	known	missense	c.941	p.Q314R	1.000	pfam_Oligo_trans_STT3	pfam_Oligo_trans_STT3	-	no_errors	STT3B	HGNC	ENSG00000163527	tier1	-	-	37	0	0.00	52	4	7.14
SYNE1	0	genome.wustl.edu	37	6	152510430	152510430	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	152510430	152510430	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.23258	p.R7753H	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				35	0	0.00	32	2	5.88
SYTL2	0	genome.wustl.edu	37	11	85428540	85428540	+	Missense_Mutation	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	85428540	85428540	T	C	SNP	SYTL2	ENST00000354566	human	ensembl	74_37	-1	known	missense	c.2615	p.E872G	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYTL2	HGNC	ENSG00000137501	tier1	-	-	67	0	0.00	59	8	11.94
TADA1	0	genome.wustl.edu	37	1	166831598	166831598	+	Nonsense_Mutation	SNP	T	T	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	166831598	166831598	T	A	SNP	TADA1	ENST00000367874	human	ensembl	74_37	-1	known	nonsense	c.382	p.K128*	0.977	NULL	superfamily_Histone-fold	-	no_errors	TADA1	HGNC	ENSG00000152382	tier1	-	-	54	0	0.00	64	4	5.88
TAS1R2	0	genome.wustl.edu	37	1	19180775	19180775	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	19180775	19180775	G	T	SNP	TAS1R2	ENST00000375371	human	ensembl	74_37	-1	novel	missense	c.1189	p.H397N	0.998	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R2	HGNC	ENSG00000179002				18	0	0.00	21	2	8.70
TBX3	0	genome.wustl.edu	37	12	115112511	115112511	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	12	115112511	115112511	G	A	SNP	TBX3	ENST00000257566	human	ensembl	74_37	-1	known	missense	c.1229	p.P410L	0.976	pfam_TBX	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111				29	0	0.00	25	2	7.41
TDRD5	0	genome.wustl.edu	37	1	179590227	179590230	+	Splice_Site	DEL	GTAA	GTAA	-			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	GTAA	GTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	179590227	179590230	GTAA	-	DEL	TDRD5	ENST00000444136	human	ensembl	74_37	+1	known	splice_site_del	c.972+1_972+1	e5+1	1.000:1.000:0.997:0.996	-	-	-	no_errors	TDRD5	HGNC	ENSG00000162782	tier1			60	0	0.00	66	11	14.29
TDRD7	0	genome.wustl.edu	37	9	100222868	100222868	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	9	100222868	100222868	G	A	SNP	TDRD7	ENST00000355295	human	ensembl	74_37	+1	known	missense	c.1264	p.G422S	0.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD7	HGNC	ENSG00000196116				46	0	0.00	42	3	6.67
TDRD9	0	genome.wustl.edu	37	14	104462118	104462118	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	14	104462118	104462118	C	T	SNP	TDRD9	ENST00000409874	human	ensembl	74_37	+1	known	missense	c.1352	p.S451F	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TDRD9	HGNC	ENSG00000156414	tier1	-	-	98	0	0.00	81	18	18.18
TEKT3	0	genome.wustl.edu	37	17	15231347	15231347	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	15231347	15231347	C	T	SNP	TEKT3	ENST00000338696	human	ensembl	74_37	-1	known	missense	c.625	p.D209N	0.999	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT3	HGNC	ENSG00000125409	tier1	-	-	45	0	0.00	29	11	27.50
TENM3	0	genome.wustl.edu	37	4	183522243	183522243	+	Silent	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	4	183522243	183522243	G	T	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	silent	c.678	p.L226	1.000	pfam_Ten_N	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336	tier1	-	-	66	0	0.00	63	25	28.09
THADA	0	genome.wustl.edu	37	2	43732856	43732856	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	43732856	43732856	G	T	SNP	THADA	ENST00000405006	human	ensembl	74_37	-1	known	missense	c.3526	p.P1176T	1.000	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	tier1	-	-	56	0	0.00	67	4	5.63
THBS2	0	genome.wustl.edu	37	6	169633059	169633059	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	169633059	169633059	C	T	SNP	THBS2	ENST00000366787	human	ensembl	74_37	-1	known	missense	c.1705	p.D569N	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340	tier1	-	-	75	0	0.00	38	4	9.52
TMEM134	0	genome.wustl.edu	37	11	67232151	67232153	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	67232151	67232153	GAA	-	DEL	TMEM134	ENST00000393877	human	ensembl	74_37	-1	known	in_frame_del	c.477_475	p.F159in_frame_del	1.000:1.000:1.000	pfam_DUF872_TM	pfam_DUF872_TM	-	no_errors	TMEM134	HGNC	ENSG00000172663	tier1			73	0	0.00	59	11	15.71
TMEM86A	0	genome.wustl.edu	37	11	18722743	18722743	+	Silent	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	11	18722743	18722743	T	C	SNP	TMEM86A	ENST00000280734	human	ensembl	74_37	+1	known	silent	c.285	p.H95	0.987	pfam_YhhN	pfam_YhhN	-	no_errors	TMEM86A	HGNC	ENSG00000151117	tier1	-	-	69	0	0.00	40	18	31.03
TMPRSS7	0	genome.wustl.edu	37	3	111795914	111795914	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	3	111795914	111795914	G	A	SNP	TMPRSS7	ENST00000419127	human	ensembl	74_37	+1	known	missense	c.1769	p.C590Y	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_CUB_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS7	HGNC	ENSG00000176040	tier1	-	-	39	0	0.00	42	4	8.70
TNFAIP3	0	genome.wustl.edu	37	6	138196886	138196886	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	138196886	138196886	G	T	SNP	TNFAIP3	ENST00000237289	human	ensembl	74_37	+1	known	missense	c.548	p.R183L	0.715	pfam_OTU,pfscan_OTU	pfam_Znf_A20,pfam_OTU,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	TNFAIP3	HGNC	ENSG00000118503				48	0	0.00	36	2	5.26
TNFSF12	0	genome.wustl.edu	37	17	7460431	7460431	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	7460431	7460431	G	T	SNP	TNFSF12	ENST00000293825	human	ensembl	74_37	+1	known	missense	c.514	p.G172W	0.986	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom	-	no_errors	TNFSF12	HGNC	ENSG00000239697				37	0	0.00	35	2	5.41
TNRC18	0	genome.wustl.edu	37	7	5401604	5401604	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	5401604	5401604	G	A	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	missense	c.4456	p.R1486W	1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				62	0	0.00	73	4	5.19
TNS4	0	genome.wustl.edu	37	17	38652298	38652298	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	38652298	38652298	T	A	SNP	TNS4	ENST00000254051	human	ensembl	74_37	-1	known	missense	c.380	p.Q127L	0.001	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTB/PI_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746	tier1	-	-	46	0	0.00	43	4	8.51
TOP2A	0	genome.wustl.edu	37	17	38546372	38546372	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	38546372	38546372	G	A	SNP	TOP2A	ENST00000423485	human	ensembl	74_37	-1	known	missense	c.4312	p.P1438S	0.956	pfam_DTHCT	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2A	HGNC	ENSG00000131747	tier1	-	-	73	0	0.00	68	7	9.33
TOPAZ1	0	genome.wustl.edu	37	3	44285525	44285525	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	3	44285525	44285525	G	T	SNP	TOPAZ1	ENST00000309765	human	ensembl	74_37	+1	known	missense	c.1527	p.K509N	0.000	NULL	NULL	-	no_errors	TOPAZ1	HGNC	ENSG00000173769	tier1	-	-	38	0	0.00	29	5	14.71
TP53	0	genome.wustl.edu	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	7578263	7578263	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.586	p.R196*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	58	0	0.00	43	13	22.81
TP53	0	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs28934578	-	26	0	0.00	20	4	16.67
TP53BP2	0	genome.wustl.edu	37	1	223986289	223986289	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	223986289	223986289	G	A	SNP	TP53BP2	ENST00000343537	human	ensembl	74_37	-1	known	missense	c.1576	p.P526S	0.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514	tier1	-	-	75	0	0.00	69	4	5.48
TRERF1	0	genome.wustl.edu	37	6	42196257	42196257	+	Frame_Shift_Del	DEL	C	C	-			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	42196257	42196257	C	-	DEL	TRERF1	ENST00000541110	human	ensembl	74_37	-1	known	frame_shift_del	c.3489	p.L1164fs	0.971	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496	tier1			28	0	0.00	37	2	5.13
TRIM31	0	genome.wustl.edu	37	6	30080455	30080455	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	30080455	30080455	A	G	SNP	TRIM31	ENST00000376734	human	ensembl	74_37	-1	known	missense	c.128	p.I43T	0.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,prints_Znf_B-box_chordata,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM31	HGNC	ENSG00000204616	tier1	-	-	41	0	0.00	38	24	38.10
TRIP13	0	genome.wustl.edu	37	5	901487	901487	+	Missense_Mutation	SNP	T	T	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	5	901487	901487	T	A	SNP	TRIP13	ENST00000166345	human	ensembl	74_37	+1	known	missense	c.476	p.F159Y	1.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,prints_ClpA/B	-	no_errors	TRIP13	HGNC	ENSG00000071539	tier1	-	-	54	0	0.00	65	4	5.71
TRNAU1AP	0	genome.wustl.edu	37	1	28904175	28904177	+	RNA	DEL	ATG	ATG	-			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	28904175	28904177	ATG	-	DEL	TRNAU1AP	ENST00000480930	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001:0.001	-	-	-	no_errors	TRNAU1AP	HGNC	ENSG00000180098	tier1			19	0	0.00	11	4	26.67
TRPC5	0	genome.wustl.edu	37	X	111078237	111078237	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	X	111078237	111078237	G	T	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.1808	p.T603N	1.000	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	tier1	-	-	32	0	0.00	32	4	11.11
TSGA13	0	genome.wustl.edu	37	7	130353927	130353927	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	130353927	130353927	G	A	SNP	TSGA13	ENST00000356588	human	ensembl	74_37	-1	known	missense	c.755	p.A252V	0.008	NULL	NULL	-	no_errors	TSGA13	HGNC	ENSG00000213265	tier1	-	-	64	0	0.00	53	5	8.47
TSNARE1	0	genome.wustl.edu	37	8	143310866	143310868	+	In_Frame_Del	DEL	GAT	GAT	-			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	8	143310866	143310868	GAT	-	DEL	TSNARE1	ENST00000307180	human	ensembl	74_37	-1	known	in_frame_del	c.1521_1519	p.I507in_frame_del	0.000:0.000:0.002	NULL	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045	tier1			33	0	0.00	39	4	9.30
TTC39B	0	genome.wustl.edu	37	9	15307094	15307094	+	Silent	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	9	15307094	15307094	C	T	SNP	TTC39B	ENST00000512701	human	ensembl	74_37	-1	known	silent	c.228	p.L76	0.994	NULL	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39B	HGNC	ENSG00000155158	tier1	-	-	64	0	0.00	30	10	25.00
TTN	0	genome.wustl.edu	37	2	179418788	179418788	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	179418788	179418788	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.81346	p.L27116	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	20	0	0.00	14	14	50.00
TTN	0	genome.wustl.edu	37	2	179519218	179519218	+	Silent	SNP	T	T	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	179519218	179519218	T	C	SNP	TTN	ENST00000589042	human	ensembl	74_37	-1	putative	silent	c.38250	p.K12750	0.905	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_PPAK_motif,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	40	0	0.00	18	23	56.10
TXNRD2	0	genome.wustl.edu	37	22	19870861	19870861	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	22	19870861	19870861	C	A	SNP	TXNRD2	ENST00000535882	human	ensembl	74_37	-1	known	missense	c.1070	p.G357V	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Thioredoxin/glutathione_Rdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_GIDA-rel,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD2	HGNC	ENSG00000184470	tier1	-	-	52	0	0.00	30	5	14.29
TYRO3	0	genome.wustl.edu	37	15	41859736	41859736	+	Splice_Site	SNP	G	G	C			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	15	41859736	41859736	G	C	SNP	TYRO3	ENST00000263798	human	ensembl	74_37	+1	known	splice_site	c.961+1	e7+1	1.000	-	-	-	no_errors	TYRO3	HGNC	ENSG00000092445				32	0	0.00	35	2	5.41
UBE3A	0	genome.wustl.edu	37	15	25584312	25584312	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	15	25584312	25584312	G	A	SNP	UBE3A	ENST00000397954	human	ensembl	74_37	-1	known	missense	c.2600	p.T867M	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pirsf_Ubiquitin-protein_ligase_E6-AP,pfscan_HECT	pfam_HECT,superfamily_HECT,smart_HECT,pirsf_Ubiquitin-protein_ligase_E6-AP,pfscan_HECT	-	no_errors	UBE3A	HGNC	ENSG00000114062	tier1	-	-	58	0	0.00	68	4	5.56
UBR4	0	genome.wustl.edu	37	1	19482038	19482038	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	19482038	19482038	G	A	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.6197	p.S2066L	1.000	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	tier1	-	-	34	0	0.00	23	4	14.81
UHRF1BP1	0	genome.wustl.edu	37	6	34802096	34802096	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	34802096	34802096	G	A	SNP	UHRF1BP1	ENST00000192788	human	ensembl	74_37	+1	known	silent	c.441	p.L147	1.000	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060	tier1	-	-	40	0	0.00	75	4	5.06
USP39	0	genome.wustl.edu	37	2	85875088	85875088	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	85875088	85875088	G	A	SNP	USP39	ENST00000409766	human	ensembl	74_37	+1	novel	missense	c.1463	p.R488K	1.000	pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP39	HGNC	ENSG00000168883	tier1	-	-	43	0	0.00	39	19	32.76
USP42	0	genome.wustl.edu	37	7	6180592	6180592	+	Missense_Mutation	SNP	C	C	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	6180592	6180592	C	G	SNP	USP42	ENST00000306177	human	ensembl	74_37	+1	known	missense	c.772	p.L258V	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP42	HGNC	ENSG00000106346				19	0	0.00	26	2	7.14
VGLL2	0	genome.wustl.edu	37	6	117589477	117589477	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	6	117589477	117589477	A	G	SNP	VGLL2	ENST00000326274	human	ensembl	74_37	+1	known	missense	c.214	p.K72E	1.000	NULL	pfam_Vg_Tdu	-	no_errors	VGLL2	HGNC	ENSG00000170162	tier1	-	-	87	0	0.00	60	4	6.25
VSTM1	0	genome.wustl.edu	37	19	54544290	54544290	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	54544290	54544290	G	A	SNP	VSTM1	ENST00000338372	human	ensembl	74_37	-1	known	silent	c.636	p.S212	0.000	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	VSTM1	HGNC	ENSG00000189068				52	0	0.00	42	5	10.42
YWHAG	0	genome.wustl.edu	37	7	75959049	75959049	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	75959049	75959049	C	A	SNP	YWHAG	ENST00000307630	human	ensembl	74_37	-1	known	missense	c.589	p.A197S	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAG	HGNC	ENSG00000170027	tier1	-	-	26	0	0.00	19	9	32.14
ZAN	0	genome.wustl.edu	37	7	100369492	100369492	+	Silent	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	100369492	100369492	G	A	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	silent	c.5274	p.V1758	1.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	tier1	-	-	68	0	0.00	48	21	30.00
ZC3H15	0	genome.wustl.edu	37	2	187359986	187359986	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	2	187359986	187359986	G	T	SNP	ZC3H15	ENST00000337859	human	ensembl	74_37	+1	known	missense	c.102	p.K34N	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H15	HGNC	ENSG00000065548	tier1	-	-	42	0	0.00	49	4	7.55
ZC3HC1	0	genome.wustl.edu	37	7	129680892	129680892	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	7	129680892	129680892	G	T	SNP	ZC3HC1	ENST00000358303	human	ensembl	74_37	-1	known	missense	c.308	p.A103E	1.000	pfam_Znf_C3HC-like	pfam_Znf_C3HC-like,pfam_NIPA/Rsm1	-	no_errors	ZC3HC1	HGNC	ENSG00000091732	tier1	-	-	69	0	0.00	68	4	5.56
ZEB1	0	genome.wustl.edu	37	10	31810442	31810442	+	Nonsense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	10	31810442	31810442	C	T	SNP	ZEB1	ENST00000361642	human	ensembl	74_37	+1	known	nonsense	c.2182	p.Q728*	0.986	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516				26	0	0.00	37	3	7.50
ZNF114	0	genome.wustl.edu	37	19	48789377	48789377	+	Missense_Mutation	SNP	G	G	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	48789377	48789377	G	T	SNP	ZNF114	ENST00000315849	human	ensembl	74_37	+1	known	missense	c.496	p.D166Y	0.001	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF114	HGNC	ENSG00000178150				18	0	0.00	27	4	12.90
ZNF18	0	genome.wustl.edu	37	17	11895864	11895864	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	17	11895864	11895864	C	T	SNP	ZNF18	ENST00000322748	human	ensembl	74_37	-1	known	missense	c.283	p.G95R	0.959	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF18	HGNC	ENSG00000154957	tier1	-	-	51	0	0.00	49	15	23.44
ZNF470	0	genome.wustl.edu	37	19	57089220	57089220	+	Missense_Mutation	SNP	C	C	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	57089220	57089220	C	A	SNP	ZNF470	ENST00000330619	human	ensembl	74_37	+1	known	missense	c.1423	p.H475N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF470	HGNC	ENSG00000197016	tier1	-	-	45	0	0.00	44	13	22.81
ZNF471	0	genome.wustl.edu	37	19	57036330	57036330	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	57036330	57036330	C	T	SNP	ZNF471	ENST00000591537	human	ensembl	74_37	+1	putative	missense	c.473	p.P158L	0.814	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF471	HGNC	ENSG00000196263	tier1	-	-	47	0	0.00	43	17	28.33
ZNF613	0	genome.wustl.edu	37	19	52448197	52448197	+	Missense_Mutation	SNP	G	G	A			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	52448197	52448197	G	A	SNP	ZNF613	ENST00000293471	human	ensembl	74_37	+1	known	missense	c.1061	p.R354H	0.895	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024				54	0	0.00	50	3	5.66
ZNF724P	0	genome.wustl.edu	37	19	23405581	23405581	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	19	23405581	23405581	A	G	SNP	ZNF724P	ENST00000418100	human	ensembl	74_37	-1	novel	missense	c.1466	p.L489P	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF724P	HGNC	ENSG00000196081	tier1	-	-	58	0	0.00	30	4	11.76
ZNF785	0	genome.wustl.edu	37	16	30596833	30596833	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	16	30596833	30596833	C	T	SNP	ZNF785	ENST00000395216	human	ensembl	74_37	-1	known	missense	c.100	p.V34M	0.864	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF785	HGNC	ENSG00000197162				50	0	0.00	42	4	8.70
ZRANB2	0	genome.wustl.edu	37	1	71536538	71536538	+	Missense_Mutation	SNP	A	A	G			TCGA-L5-A8NV-01A-11D-A37C-09	TCGA-L5-A8NV-11A-11D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5818360-5a6d-4513-9b7b-07a0fd43189a	6b659589-badb-4cff-9ca1-e9c1c2c1c86f	1	71536538	71536538	A	G	SNP	ZRANB2	ENST00000370920	human	ensembl	74_37	-1	known	missense	c.655	p.S219P	1.000	pirsf_UCP037956_Znf_RanB2	pfam_Znf_RanBP2,smart_Znf_RanBP2,pirsf_UCP037956_Znf_RanB2,pfscan_Znf_RanBP2	-	no_errors	ZRANB2	HGNC	ENSG00000132485	tier1	-	-	71	0	0.00	68	6	8.11
