Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ADAMTS20	0	genome.wustl.edu	37	12	43771250	43771250	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	12	43771250	43771250	G	A	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.4913	p.P1638L	0.997	NULL	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	tier1	-	-	47	0	0.00	47	7	12.96
AFG3L1P	0	genome.wustl.edu	37	16	90066363	90066363	+	RNA	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	16	90066363	90066363	G	A	SNP	AFG3L1P	ENST00000388970	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.966	-	-	-	no_errors	AFG3L1P	HGNC	ENSG00000223959	tier1	-	-	34	0	0.00	17	12	41.38
AGAP10	0	genome.wustl.edu	37	10	47207813	47207813	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	10	47207813	47207813	T	C	SNP	AGAP10	ENST00000413193	human	ensembl	74_37	-1	known	missense	c.683	p.H228R	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP10	HGNC	ENSG00000204172	tier1	rs202014361	-	93	0	0.00	68	9	11.69
AMBRA1	0	genome.wustl.edu	37	11	46563800	46563800	+	Silent	SNP	A	A	G			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	11	46563800	46563800	A	G	SNP	AMBRA1	ENST00000458649	human	ensembl	74_37	-1	known	silent	c.1767	p.P589	0.627	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	tier1	-	-	24	0	0.00	33	10	23.26
AMPH	0	genome.wustl.edu	37	7	38502672	38502672	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	7	38502672	38502672	G	A	SNP	AMPH	ENST00000356264	human	ensembl	74_37	-1	known	missense	c.791	p.P264L	0.992	NULL	pfam_BAR_dom,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_1,prints_SH3_domain	-	no_errors	AMPH	HGNC	ENSG00000078053	tier1	-	-	58	0	0.00	85	6	6.59
ANKLE2	0	genome.wustl.edu	37	12	133306568	133306568	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	12	133306568	133306568	G	A	SNP	ANKLE2	ENST00000357997	human	ensembl	74_37	-1	known	missense	c.2180	p.P727L	0.749	NULL	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM_dom	-	no_errors	ANKLE2	HGNC	ENSG00000176915				27	0	0.00	23	3	11.54
ANKRD20A5P	0	genome.wustl.edu	37	18	14184381	14184381	+	RNA	DEL	T	T	-			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	18	14184381	14184381	T	0	DEL	ANKRD20A5P	ENST00000581935	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANKRD20A5P	HGNC	ENSG00000186481				8	0	0.00	4	2	33.33
ARL14EP	0	genome.wustl.edu	37	11	30358340	30358340	+	Nonstop_Mutation	SNP	T	T	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	11	30358340	30358340	T	A	SNP	ARL14EP	ENST00000282032	human	ensembl	74_37	+1	known	nonstop	c.781	p.*261K	0.924	NULL	NULL	-	no_errors	ARL14EP	HGNC	ENSG00000152219				28	0	0.00	17	13	43.33
ARMC4	0	genome.wustl.edu	37	10	28196695	28196695	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	10	28196695	28196695	C	T	SNP	ARMC4	ENST00000305242	human	ensembl	74_37	-1	known	missense	c.2507	p.R836H	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP_dom,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126	tier1	-	-	14	0	0.00	23	18	43.90
ATAD3B	0	genome.wustl.edu	37	1	1412670	1412670	+	Silent	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	1	1412670	1412670	C	T	SNP	ATAD3B	ENST00000308647	human	ensembl	74_37	+1	known	silent	c.222	p.A74	0.892	pfam_DUF3523	pfam_DUF3523,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD3B	HGNC	ENSG00000160072	tier1	-	-	76	0	0.00	25	28	52.83
B3GALT2	0	genome.wustl.edu	37	1	193149736	193149736	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	1	193149736	193149736	A	T	SNP	B3GALT2	ENST00000367434	human	ensembl	74_37	-1	known	missense	c.957	p.F319L	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GALT2	HGNC	ENSG00000162630	tier1	-	-	49	0	0.00	48	28	36.84
BEND7	0	genome.wustl.edu	37	10	13485245	13485245	+	RNA	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	10	13485245	13485245	C	A	SNP	BEND7	ENST00000480703	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.397	-	-	-	no_errors	BEND7	HGNC	ENSG00000165626	tier1	-	-	46	0	0.00	39	7	15.22
BOD1L2	0	genome.wustl.edu	37	18	54815025	54815025	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	18	54815025	54815025	G	T	SNP	BOD1L2	ENST00000585477	human	ensembl	74_37	+1	known	missense	c.482	p.G161V	0.000	NULL	NULL	-	no_errors	BOD1L2	HGNC	ENSG00000228075				34	0	0.00	31	3	8.82
BTN2A2	0	genome.wustl.edu	37	6	26390424	26390424	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	6	26390424	26390424	G	A	SNP	BTN2A2	ENST00000356709	human	ensembl	74_37	+1	known	missense	c.916	p.E306K	0.488	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A2	HGNC	ENSG00000124508				28	0	0.00	18	5	21.74
C12orf56	0	genome.wustl.edu	37	12	64712546	64712546	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	12	64712546	64712546	A	T	SNP	C12orf56	ENST00000543942	human	ensembl	74_37	-1	putative	missense	c.703	p.S235T	0.101	NULL	NULL	-	no_errors	C12orf56	HGNC	ENSG00000185306				63	0	0.00	83	6	6.74
CASD1	0	genome.wustl.edu	37	7	94174972	94174972	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	7	94174972	94174972	C	G	SNP	CASD1	ENST00000297273	human	ensembl	74_37	+1	known	missense	c.1592	p.T531S	0.984	pfam_Cas1_AcylTrans_dom	pfam_Cas1_AcylTrans_dom,superfamily_Cyclin-like	-	no_errors	CASD1	HGNC	ENSG00000127995	tier1	-	-	42	0	0.00	64	17	20.99
CCDC39	0	genome.wustl.edu	37	3	180369978	180369978	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	3	180369978	180369978	T	A	SNP	CCDC39	ENST00000442201	human	ensembl	74_37	-1	known	missense	c.1007	p.K336M	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075	tier1	-	-	42	0	0.00	64	6	8.57
CCDC88A	0	genome.wustl.edu	37	2	55563852	55563852	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	2	55563852	55563852	T	A	SNP	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	missense	c.1621	p.T541S	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355	tier1	-	-	28	0	0.00	27	16	37.21
CCDC88B	0	genome.wustl.edu	37	11	64109782	64109782	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	11	64109782	64109782	C	A	SNP	CCDC88B	ENST00000356786	human	ensembl	74_37	+1	known	missense	c.838	p.L280M	0.786	pfam_Hook-related_fam	pfam_Hook-related_fam	-	no_errors	CCDC88B	HGNC	ENSG00000168071	tier1	-	-	36	0	0.00	35	4	10.26
CCT7	0	genome.wustl.edu	37	2	73471716	73471716	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	2	73471716	73471716	G	T	SNP	CCT7	ENST00000258091	human	ensembl	74_37	+1	known	missense	c.491	p.S164I	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_eta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_eta	-	no_errors	CCT7	HGNC	ENSG00000135624	tier1	-	-	39	0	0.00	44	22	33.33
CELSR2	0	genome.wustl.edu	37	1	109811375	109811375	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	1	109811375	109811375	C	T	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.6491	p.T2164M	1.000	pfam_DUF3497	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	tier1	-	-	68	0	0.00	32	31	49.21
CREBBP	0	genome.wustl.edu	37	16	3807902	3807902	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	16	3807902	3807902	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	nonsense	c.3517	p.R1173*	0.997	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	tier1	-	-	11	0	0.00	19	6	24.00
CROCC	0	genome.wustl.edu	37	1	17280821	17280821	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	1	17280821	17280821	G	C	SNP	CROCC	ENST00000375541	human	ensembl	74_37	+1	known	missense	c.3290	p.R1097P	1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453				23	0	0.00	22	3	12.00
CTNND2	0	genome.wustl.edu	37	5	11082930	11082930	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	5	11082930	11082930	C	A	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.2666	p.R889L	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862	tier1	-	-	23	0	0.00	28	11	28.21
CUL3	0	genome.wustl.edu	37	2	225422486	225422486	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	2	225422486	225422486	G	A	SNP	CUL3	ENST00000264414	human	ensembl	74_37	-1	known	missense	c.154	p.L52F	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL3	HGNC	ENSG00000036257	tier1	-	-	49	0	0.00	21	20	48.78
DAGLA	0	genome.wustl.edu	37	11	61502404	61502404	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	11	61502404	61502404	C	T	SNP	DAGLA	ENST00000257215	human	ensembl	74_37	+1	known	missense	c.1058	p.A353V	1.000	NULL	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780	tier1	-	-	62	0	0.00	57	18	24.00
DEPDC5	0	genome.wustl.edu	37	22	32239099	32239099	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	22	32239099	32239099	G	T	SNP	DEPDC5	ENST00000266091	human	ensembl	74_37	+1	known	missense	c.2534	p.R845L	1.000	NULL	pfam_IML1,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150				53	0	0.00	48	3	5.88
DIO2	0	genome.wustl.edu	37	14	80677773	80677773	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	14	80677773	80677773	G	T	SNP	DIO2	ENST00000422005	human	ensembl	74_37	-1	known	missense	c.43	p.L15M	1.000	pfam_Iodothyronine_deiodinase	pfam_Iodothyronine_deiodinase	-	no_errors	DIO2	HGNC	ENSG00000211448	tier1	-	-	24	0	0.00	34	15	30.61
DLGAP3	0	genome.wustl.edu	37	1	35334318	35334318	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	1	35334318	35334318	G	T	SNP	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	nonsense	c.2373	p.C791*	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544	tier1	-	-	31	0	0.00	7	4	36.36
DNAJC7	0	genome.wustl.edu	37	17	40149135	40149135	+	Silent	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	17	40149135	40149135	G	T	SNP	DNAJC7	ENST00000457167	human	ensembl	74_37	-1	known	silent	c.289	p.R97	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_TPR_repeat,smart_DnaJ_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC7	HGNC	ENSG00000168259				46	0	0.00	48	4	7.69
DNM1P47	0	genome.wustl.edu	37	15	102304740	102304740	+	RNA	SNP	G	G	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	15	102304740	102304740	G	C	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				22	0	0.00	23	9	28.12
DYNC1H1	0	genome.wustl.edu	37	14	102460527	102460527	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	14	102460527	102460527	G	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	missense	c.3022	p.V1008L	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	tier1	-	-	62	0	0.00	39	29	42.65
ENSG00000225946	0	genome.wustl.edu	37	7	100608573	100608573	+	RNA	SNP	G	G	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	7	100608573	100608573	G	C	SNP	ENSG00000225946	ENST00000420080	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-395B7.2	Clone_based_vega_gene	ENSG00000225946	tier1	rs10251415	-	17	0	0.00	20	11	35.48
ENSG00000232719	0	genome.wustl.edu	37	2	201967217	201967218	+	RNA	DEL	AG	AG	-			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	2	201967217	201967218	AG	0	DEL	ENSG00000232719	ENST00000448256	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.405:0.966	-	-	-	no_errors	RP11-13J8.1	Clone_based_vega_gene	ENSG00000232719				8	0	0.00	4	2	33.33
ENSG00000250274	0	genome.wustl.edu	37	5	169736910	169736910	+	RNA	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	5	169736910	169736910	C	A	SNP	ENSG00000250274	ENST00000511921	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	CTB-114C7.4	Clone_based_vega_gene	ENSG00000250274	tier1	-	-	12	0	0.00	6	10	62.50
ENSG00000269490	0	genome.wustl.edu	37	6	33663453	33663453	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	6	33663453	33663453	G	A	SNP	ENSG00000269490	ENST00000594414	human	ensembl	74_37	-1	novel	missense	c.22	p.P8S	0.003	NULL	NULL	-	no_errors	SBP1	Uniprot_gn	ENSG00000269490				22	0	0.00	23	3	11.54
F9	0	genome.wustl.edu	37	X	138643810	138643810	+	Silent	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	X	138643810	138643810	C	T	SNP	F9	ENST00000218099	human	ensembl	74_37	+1	known	silent	c.966	p.D322	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Pept_S1A_FX,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,pirsf_Pept_S1A_FX,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F9	HGNC	ENSG00000101981	tier1	-	-	32	0	0.00	10	48	82.76
FAM230B	0	genome.wustl.edu	37	22	21538350	21538350	+	RNA	SNP	G	G	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	22	21538350	21538350	G	C	SNP	FAM230B	ENST00000451257	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM230B	HGNC	ENSG00000215498	tier1	-	-	39	0	0.00	23	4	14.81
FLT1	0	genome.wustl.edu	37	13	28959159	28959159	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	13	28959159	28959159	G	T	SNP	FLT1	ENST00000282397	human	ensembl	74_37	-1	known	missense	c.1979	p.A660E	0.999	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR1_rcpt	-	no_errors	FLT1	HGNC	ENSG00000102755	tier1	-	-	58	0	0.00	57	5	8.06
GANAB	0	genome.wustl.edu	37	11	62397743	62397743	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	11	62397743	62397743	C	A	SNP	GANAB	ENST00000346178	human	ensembl	74_37	-1	known	missense	c.1585	p.A529S	0.998	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom	-	no_errors	GANAB	HGNC	ENSG00000089597	tier1	-	-	41	0	0.00	63	13	17.11
GPR98	0	genome.wustl.edu	37	5	89981640	89981640	+	Silent	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	5	89981640	89981640	G	T	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	silent	c.6318	p.A2106	0.815	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				29	0	0.00	20	2	9.09
GRID2IP	0	genome.wustl.edu	37	7	6541473	6541473	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	7	6541473	6541473	A	G	SNP	GRID2IP	ENST00000457091	human	ensembl	74_37	-1	putative	missense	c.3338	p.I1113T	0.986	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_FH2_Formin,pfscan_PDZ	-	no_errors	GRID2IP	HGNC	ENSG00000215045				39	0	0.00	39	4	9.30
GRIK4	0	genome.wustl.edu	37	11	120831733	120831733	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	11	120831733	120831733	G	A	SNP	GRIK4	ENST00000527524	human	ensembl	74_37	+1	known	missense	c.1990	p.A664T	0.628	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403	tier1	rs139636929	-	53	0	0.00	26	10	27.78
GTPBP2	0	genome.wustl.edu	37	6	43588707	43588707	+	RNA	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	6	43588707	43588707	G	A	SNP	GTPBP2	ENST00000476510	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.154	-	-	-	no_errors	GTPBP2	HGNC	ENSG00000172432	tier1	-	-	22	0	0.00	17	11	39.29
GUSBP2	0	genome.wustl.edu	37	6	26856948	26856948	+	RNA	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	6	26856948	26856948	C	A	SNP	GUSBP2	ENST00000463434	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.501	-	-	-	no_errors	GUSBP2	HGNC	ENSG00000241549	tier1	-	-	106	0	0.00	102	31	23.31
HDAC4	0	genome.wustl.edu	37	2	240016733	240016733	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	2	240016733	240016733	G	T	SNP	HDAC4	ENST00000345617	human	ensembl	74_37	-1	known	missense	c.2238	p.F746L	0.191	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024	tier1	-	-	45	0	0.00	54	6	9.84
HID1	0	genome.wustl.edu	37	17	72958339	72958339	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	17	72958339	72958339	C	A	SNP	HID1	ENST00000425042	human	ensembl	74_37	-1	known	missense	c.601	p.D201Y	1.000	NULL	pfam_Dymeclin	-	no_errors	HID1	HGNC	ENSG00000167861	tier1	-	-	33	0	0.00	12	19	61.29
HMGN5	0	genome.wustl.edu	37	X	80371790	80371790	+	Silent	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	X	80371790	80371790	G	T	SNP	HMGN5	ENST00000358130	human	ensembl	74_37	-1	known	silent	c.180	p.A60	0.020	pfam_HMGN_fam,smart_HMGN_fam	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	-	no_errors	HMGN5	HGNC	ENSG00000198157	tier1	-	-	22	0	0.00	24	5	17.24
IL12RB2	0	genome.wustl.edu	37	1	67855810	67855810	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	1	67855810	67855810	A	-	DEL	IL12RB2	ENST00000262345	human	ensembl	74_37	+1	known	frame_shift_del	c.2045	p.E682fs	1.000	NULL	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985	tier1			39	0	0.00	43	5	10.42
KCTD21	0	genome.wustl.edu	37	11	77885236	77885236	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	11	77885236	77885236	G	A	SNP	KCTD21	ENST00000340067	human	ensembl	74_37	-1	known	missense	c.365	p.T122M	0.446	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD21	HGNC	ENSG00000188997	tier1	-	-	28	0	0.00	36	9	20.00
KIF3A	0	genome.wustl.edu	37	5	132035914	132035914	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	5	132035914	132035914	C	A	SNP	KIF3A	ENST00000378735	human	ensembl	74_37	-1	known	missense	c.1929	p.E643D	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF3A	HGNC	ENSG00000131437	tier1	-	-	11	0	0.00	11	9	45.00
KPNB1	0	genome.wustl.edu	37	17	45750492	45750492	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	17	45750492	45750492	G	T	SNP	KPNB1	ENST00000290158	human	ensembl	74_37	+1	known	missense	c.1656	p.L552F	0.952	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,pfam_Armadillo,superfamily_ARM-type_fold,smart_Importin-beta_N,smart_Armadillo,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	KPNB1	HGNC	ENSG00000108424	tier1	-	-	52	0	0.00	55	4	6.78
LAMA2	0	genome.wustl.edu	37	6	129785573	129785573	+	Silent	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	6	129785573	129785573	G	T	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	silent	c.7131	p.L2377	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	tier1	-	-	44	0	0.00	54	4	6.90
LINC00623	0	genome.wustl.edu	37	1	149581062	149581063	+	RNA	INS	-	-	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	1	149581062	149581063	0	A	INS	LINC00623	ENST00000598569	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-353N4.6	Clone_based_vega_gene	ENSG00000269501				29	0	0.00	37	6	13.95
LOC100505502	0	genome.wustl.edu	37	10	31652033	31652033	+	RNA	SNP	T	T	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	10	31652033	31652033	T	A	SNP	LOC100505502	ENST00000359888	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.109	-	-	-	no_errors	RP11-192P3.5	Clone_based_vega_gene	ENSG00000196960	tier1	-	-	77	0	0.00	85	16	15.69
LOC643733	0	genome.wustl.edu	37	11	104779414	104779415	+	RNA	INS	-	-	CA			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	11	104779414	104779415	-	CA	INS	LOC643733	ENST00000530264	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-693N9.2	Clone_based_vega_gene	ENSG00000235505	tier1			10	0	0.00	21	3	12.50
LOC654342	0	genome.wustl.edu	37	2	91824935	91824935	+	RNA	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	2	91824935	91824935	C	A	SNP	LOC654342	ENST00000608018	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC027612.6	Clone_based_vega_gene	ENSG00000143429	tier1	-	-	104	0	0.00	145	17	10.49
LPAL2	0	genome.wustl.edu	37	6	160887988	160887988	+	RNA	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	6	160887988	160887988	C	T	SNP	LPAL2	ENST00000435757	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LPAL2	HGNC	ENSG00000213071	tier1	-	-	78	0	0.00	63	12	15.79
LRGUK	0	genome.wustl.edu	37	7	133833054	133833054	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	7	133833054	133833054	A	C	SNP	LRGUK	ENST00000285928	human	ensembl	74_37	+1	known	missense	c.652	p.T218P	1.000	NULL	pfam_GK/Ca_channel_bsu,pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	-	no_errors	LRGUK	HGNC	ENSG00000155530	tier1	-	-	17	0	0.00	12	6	33.33
LRIT3	0	genome.wustl.edu	37	4	110789009	110789009	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	4	110789009	110789009	G	T	SNP	LRIT3	ENST00000594814	human	ensembl	74_37	+1	known	missense	c.802	p.G268C	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIT3	HGNC	ENSG00000183423	tier1	-	-	32	0	0.00	36	4	10.00
LRP2	0	genome.wustl.edu	37	2	170030640	170030640	+	Silent	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	2	170030640	170030640	G	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	silent	c.10803	p.C3601	0.975	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	tier1	-	-	44	0	0.00	68	27	28.42
LRRC7	0	genome.wustl.edu	37	1	70504428	70504428	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	1	70504428	70504428	T	A	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.2807	p.M936K	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	tier1	-	-	20	0	0.00	21	4	16.00
LRTM2	0	genome.wustl.edu	37	12	1944589	1944590	+	RNA	DEL	AC	AC	-			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	12	1944589	1944590	AC	-	DEL	LRTM2	ENST00000543730	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.001:0.002	-	-	-	no_errors	LRTM2	HGNC	ENSG00000166159	tier1			8	0	0.00	4	2	33.33
LYPLA1	0	genome.wustl.edu	37	8	54965225	54965225	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	8	54965225	54965225	G	A	SNP	LYPLA1	ENST00000316963	human	ensembl	74_37	-1	known	missense	c.452	p.S151F	0.998	pfam_PLipase/COase/thioEstase	pfam_PLipase/COase/thioEstase,pfam_AB_hydrolase_3	-	no_errors	LYPLA1	HGNC	ENSG00000120992	tier1	-	-	16	0	0.00	23	9	28.12
LZTR1	0	genome.wustl.edu	37	22	21348483	21348483	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	22	21348483	21348483	C	T	SNP	LZTR1	ENST00000215739	human	ensembl	74_37	+1	known	missense	c.1540	p.R514W	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949	tier1	-	-	58	0	0.00	30	12	28.57
MAP6	0	genome.wustl.edu	37	11	75299016	75299016	+	Silent	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	11	75299016	75299016	C	T	SNP	MAP6	ENST00000304771	human	ensembl	74_37	-1	known	silent	c.1530	p.T510	0.007	NULL	pfam_MAP6/FAM154	-	no_errors	MAP6	HGNC	ENSG00000171533	tier1	-	-	86	0	0.00	139	12	7.95
MARK4	0	genome.wustl.edu	37	19	45801428	45801428	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	19	45801428	45801428	G	C	SNP	MARK4	ENST00000300843	human	ensembl	74_37	+1	known	missense	c.1905	p.Q635H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK4	HGNC	ENSG00000007047	tier1	-	-	67	0	0.00	45	17	27.42
MBNL1	0	genome.wustl.edu	37	3	152016909	152016909	+	RNA	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	3	152016909	152016909	C	T	SNP	MBNL1	ENST00000466565	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	MBNL1	HGNC	ENSG00000152601	tier1	-	-	21	0	0.00	54	8	12.90
MDGA2	0	genome.wustl.edu	37	14	47351393	47351393	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	14	47351393	47351393	A	T	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	missense	c.2270	p.I757N	1.000	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781	tier1	-	-	41	0	0.00	39	17	30.36
MGARP	0	genome.wustl.edu	37	4	140188162	140188162	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	4	140188162	140188162	G	T	SNP	MGARP	ENST00000398955	human	ensembl	74_37	-1	known	missense	c.314	p.A105E	0.010	NULL	NULL	-	no_errors	MGARP	HGNC	ENSG00000137463	tier1	-	-	74	0	0.00	68	4	5.56
MICU2	0	genome.wustl.edu	37	13	22113447	22113447	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	13	22113447	22113447	C	T	SNP	MICU2	ENST00000382374	human	ensembl	74_37	-1	known	missense	c.460	p.D154N	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MICU2	HGNC	ENSG00000165487	tier1	-	-	26	0	0.00	19	6	24.00
MORC2	0	genome.wustl.edu	37	22	31324086	31324086	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	22	31324086	31324086	C	T	SNP	MORC2	ENST00000397641	human	ensembl	74_37	-1	known	missense	c.2950	p.E984K	1.000	NULL	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Carb-bd_dom,pfscan_Znf_CW	-	no_errors	MORC2	HGNC	ENSG00000133422	tier1	-	-	77	0	0.00	54	17	23.94
MOV10	0	genome.wustl.edu	37	1	113237086	113237086	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	1	113237086	113237086	G	A	SNP	MOV10	ENST00000357443	human	ensembl	74_37	+1	known	missense	c.1307	p.R436H	0.969	NULL	superfamily_P-loop_NTPase	-	no_errors	MOV10	HGNC	ENSG00000155363	tier1	-	-	66	0	0.00	21	31	59.62
MTMR14	0	genome.wustl.edu	37	3	9731787	9731787	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	3	9731787	9731787	T	A	SNP	MTMR14	ENST00000296003	human	ensembl	74_37	+1	known	missense	c.1573	p.F525I	0.995	NULL	NULL	-	no_errors	MTMR14	HGNC	ENSG00000163719	tier1	-	-	41	0	0.00	45	4	8.16
MUC4	0	genome.wustl.edu	37	3	195508324	195508324	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	3	195508324	195508324	C	T	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.10127	p.R3376H	0.006	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	rs425562	-	258	0	0.00	497	28	5.29
MYBPC1	0	genome.wustl.edu	37	12	102021559	102021559	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	12	102021559	102021559	G	T	SNP	MYBPC1	ENST00000361466	human	ensembl	74_37	+1	known	missense	c.155	p.R52L	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC1	HGNC	ENSG00000196091	tier1	-	-	47	0	0.00	61	5	7.58
MYBPC2	0	genome.wustl.edu	37	19	50951588	50951588	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	19	50951588	50951588	G	A	SNP	MYBPC2	ENST00000357701	human	ensembl	74_37	+1	known	nonsense	c.1413	p.W471*	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC2	HGNC	ENSG00000086967	tier1	-	-	40	0	0.00	57	5	8.06
NFE2L3	0	genome.wustl.edu	37	7	26224292	26224292	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	7	26224292	26224292	A	G	SNP	NFE2L3	ENST00000056233	human	ensembl	74_37	+1	known	missense	c.974	p.N325S	0.000	NULL	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	tier1	rs143091809	-	39	0	0.00	49	6	10.91
NFE2L3	0	genome.wustl.edu	37	7	26224313	26224313	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	7	26224313	26224313	C	T	SNP	NFE2L3	ENST00000056233	human	ensembl	74_37	+1	known	missense	c.995	p.T332I	0.000	NULL	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	tier1	rs147199325	-	30	0	0.00	54	8	12.90
NFE2L3	0	genome.wustl.edu	37	7	26224323	26224323	+	Silent	SNP	T	T	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	7	26224323	26224323	T	C	SNP	NFE2L3	ENST00000056233	human	ensembl	74_37	+1	known	silent	c.1005	p.T335	0.002	NULL	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344	tier1	rs113074870	-	28	0	0.00	49	10	16.95
NOS3	0	genome.wustl.edu	37	7	150695460	150695460	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	7	150695460	150695460	G	A	SNP	NOS3	ENST00000297494	human	ensembl	74_37	+1	known	missense	c.598	p.D200N	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS3	HGNC	ENSG00000164867	tier1	-	-	32	0	0.00	23	16	41.03
NPIPB11	0	genome.wustl.edu	37	16	29394470	29394470	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	16	29394470	29394470	G	A	SNP	NPIPB11	ENST00000524087	human	ensembl	74_37	-1	putative	missense	c.1783	p.R595W	0.042	NULL	NULL	-	no_errors	NPIPB11	HGNC	ENSG00000254206	tier1	-	-	47	0	0.00	63	34	35.05
NSMAF	0	genome.wustl.edu	37	8	59510074	59510074	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	8	59510074	59510074	G	A	SNP	NSMAF	ENST00000427130	human	ensembl	74_37	-1	known	missense	c.1757	p.T586M	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,pfam_GRAM,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_GRAM,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NSMAF	HGNC	ENSG00000035681	tier1	-	-	40	0	0.00	33	26	44.07
OGDH	0	genome.wustl.edu	37	7	44736644	44736644	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	7	44736644	44736644	G	A	SNP	OGDH	ENST00000222673	human	ensembl	74_37	+1	known	missense	c.2032	p.V678M	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953	tier1	rs139641350	-	59	0	0.00	63	30	32.26
OLFML2B	0	genome.wustl.edu	37	1	161954722	161954722	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	1	161954722	161954722	T	C	SNP	OLFML2B	ENST00000294794	human	ensembl	74_37	-1	known	missense	c.1523	p.N508S	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_NA-bd_OB-fold,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745	tier1	-	-	79	0	0.00	62	30	32.61
OR10A6	0	genome.wustl.edu	37	11	7949463	7949463	+	Silent	SNP	G	G	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	11	7949463	7949463	G	C	SNP	OR10A6	ENST00000309838	human	ensembl	74_37	-1	known	silent	c.747	p.T249	0.284	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A6	HGNC	ENSG00000175393	tier1	-	-	54	0	0.00	42	12	22.22
OR10Z1	0	genome.wustl.edu	37	1	158576618	158576618	+	Silent	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	1	158576618	158576618	C	A	SNP	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	silent	c.390	p.L130	0.925	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967	tier1	-	-	43	0	0.00	50	26	34.21
OR1J1	0	genome.wustl.edu	37	9	125240137	125240137	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	9	125240137	125240137	C	A	SNP	OR1J1	ENST00000259357	human	ensembl	74_37	-1	known	missense	c.69	p.Q23H	0.070	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1J1	HGNC	ENSG00000136834	tier1	-	-	66	0	0.00	68	32	32.00
OR5AU1	0	genome.wustl.edu	37	14	21623754	21623754	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	14	21623754	21623754	G	A	SNP	OR5AU1	ENST00000304418	human	ensembl	74_37	-1	known	missense	c.431	p.S144F	0.099	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AU1	HGNC	ENSG00000169327				33	0	0.00	38	3	7.32
PARP8	0	genome.wustl.edu	37	5	50093011	50093011	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	5	50093011	50093011	G	T	SNP	PARP8	ENST00000281631	human	ensembl	74_37	+1	known	nonsense	c.1519	p.E507*	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883	tier1	-	-	50	0	0.00	43	4	8.51
PBX3	0	genome.wustl.edu	37	9	128697755	128697755	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	9	128697755	128697755	A	-	DEL	PBX3	ENST00000373489	human	ensembl	74_37	+1	known	frame_shift_del	c.712	p.R239fs	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX3	HGNC	ENSG00000167081	tier1			23	0	0.00	29	2	6.45
PDLIM5	0	genome.wustl.edu	37	4	95503830	95503830	+	RNA	SNP	T	T	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	4	95503830	95503830	T	C	SNP	PDLIM5	ENST00000514830	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDLIM5	HGNC	ENSG00000163110	tier1	-	-	26	0	0.00	18	13	41.94
PIK3C2A	0	genome.wustl.edu	37	11	17190418	17190418	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	11	17190418	17190418	C	A	SNP	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	nonsense	c.871	p.E291*	0.996	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405				34	0	0.00	55	4	6.78
PLTP	0	genome.wustl.edu	37	20	44538215	44538215	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	20	44538215	44538215	G	T	SNP	PLTP	ENST00000542937	human	ensembl	74_37	-1	known	missense	c.485	p.S162Y	1.000	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	PLTP	HGNC	ENSG00000100979				17	0	0.00	16	3	15.79
POP5	0	genome.wustl.edu	37	12	121017030	121017031	+	RNA	DEL	TG	TG	-			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	12	121017030	121017031	TG	-	DEL	POP5	ENST00000542776	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	POP5	HGNC	ENSG00000167272	tier1			17	0	0.00	22	5	18.52
PRCP	0	genome.wustl.edu	37	11	82611294	82611294	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	11	82611294	82611294	G	A	SNP	PRCP	ENST00000393399	human	ensembl	74_37	-1	known	missense	c.151	p.L51F	0.764	NULL	pfam_Peptidase_S28	-	no_errors	PRCP	HGNC	ENSG00000137509	tier1	-	-	69	0	0.00	131	23	14.94
PRKCH	0	genome.wustl.edu	37	14	61788845	61788845	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	14	61788845	61788845	A	G	SNP	PRKCH	ENST00000332981	human	ensembl	74_37	+1	known	missense	c.26	p.N9S	1.000	superfamily_C2_dom,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCH	HGNC	ENSG00000027075	tier1	-	-	26	0	0.00	19	17	47.22
PTPRO	0	genome.wustl.edu	37	12	15710404	15710404	+	Silent	SNP	T	T	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	12	15710404	15710404	T	C	SNP	PTPRO	ENST00000281171	human	ensembl	74_37	+1	known	silent	c.2574	p.G858	0.983	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490	tier1	-	-	42	0	0.00	48	22	31.43
QSOX1	0	genome.wustl.edu	37	1	180165983	180165983	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	1	180165983	180165983	G	T	SNP	QSOX1	ENST00000367602	human	ensembl	74_37	+1	known	missense	c.2055	p.Q685H	0.535	NULL	pfam_ERV/ALR_sulphydryl_oxidase,pfam_Thioredoxin_domain,superfamily_ERV/ALR_sulphydryl_oxidase,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260	tier1	-	-	90	0	0.00	98	7	6.67
RABGAP1	0	genome.wustl.edu	37	9	125827753	125827753	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	9	125827753	125827753	A	-	DEL	RABGAP1	ENST00000456584	human	ensembl	74_37	+1	known	frame_shift_del	c.1717	p.K576fs	0.000	pfscan_Rab-GTPase-TBC_dom	pfam_Kinesin-like,pfam_Rab-GTPase-TBC_dom,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454	tier1			17	0	0.00	15	3	16.67
RNY5	0	genome.wustl.edu	37	7	148638612	148638612	+	RNA	SNP	T	T	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	7	148638612	148638612	T	C	SNP	RNY5	ENST00000516501	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RNY5	HGNC	ENSG00000252310	tier1	-	-	29	0	0.00	24	13	35.14
RPAP1	0	genome.wustl.edu	37	15	41829177	41829177	+	Silent	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	15	41829177	41829177	C	T	SNP	RPAP1	ENST00000304330	human	ensembl	74_37	-1	known	silent	c.147	p.P49	0.000	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932	tier1	-	-	20	0	0.00	25	5	16.67
RTN1	0	genome.wustl.edu	37	14	60193708	60193708	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	14	60193708	60193708	G	A	SNP	RTN1	ENST00000267484	human	ensembl	74_37	-1	known	missense	c.1694	p.A565V	0.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN1	HGNC	ENSG00000139970	tier1	-	-	58	0	0.00	41	32	43.84
RUNX1T1	0	genome.wustl.edu	37	8	92972475	92972475	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	8	92972475	92972475	G	A	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	missense	c.1843	p.R615C	1.000	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102	tier1	-	-	93	0	0.00	84	15	15.15
SCN11A	0	genome.wustl.edu	37	3	38962700	38962700	+	Silent	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	3	38962700	38962700	C	A	SNP	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	silent	c.759	p.L253	0.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356	tier1	-	-	18	0	0.00	15	4	21.05
SIN3A	0	genome.wustl.edu	37	15	75668064	75668064	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	15	75668064	75668064	T	C	SNP	SIN3A	ENST00000360439	human	ensembl	74_37	-1	known	missense	c.3533	p.Y1178C	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	tier1	-	-	34	0	0.00	44	8	15.38
SIRT1	0	genome.wustl.edu	37	10	69644841	69644841	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	10	69644841	69644841	A	G	SNP	SIRT1	ENST00000212015	human	ensembl	74_37	+1	known	missense	c.362	p.Y121C	0.984	NULL	pfam_Sirtuin,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT1	HGNC	ENSG00000096717				9	0	0.00	3	3	50.00
SLC6A10P	0	genome.wustl.edu	37	16	32890602	32890602	+	RNA	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	16	32890602	32890602	C	A	SNP	SLC6A10P	ENST00000330048	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC6A10P	HGNC	ENSG00000214617	tier1	-	-	109	0	0.00	104	24	18.75
SLCO1B1	0	genome.wustl.edu	37	12	21349897	21349897	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	12	21349897	21349897	C	T	SNP	SLCO1B1	ENST00000256958	human	ensembl	74_37	+1	known	missense	c.745	p.P249S	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538	tier1	-	-	78	0	0.00	62	42	40.38
SMG1	0	genome.wustl.edu	37	16	18840639	18840639	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	16	18840639	18840639	T	A	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	missense	c.9572	p.Q3191L	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				14	0	0.00	36	3	7.69
SMYD4	0	genome.wustl.edu	37	17	1703986	1703986	+	Silent	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	17	1703986	1703986	G	T	SNP	SMYD4	ENST00000305513	human	ensembl	74_37	-1	known	silent	c.702	p.S234	0.667	NULL	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532				34	0	0.00	25	2	7.41
SP140L	0	genome.wustl.edu	37	2	231223688	231223688	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	2	231223688	231223688	G	A	SNP	SP140L	ENST00000415673	human	ensembl	74_37	+1	known	missense	c.280	p.D94N	0.460	pfam_Sp100	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140L	HGNC	ENSG00000185404	tier1	-	-	40	0	0.00	15	11	42.31
SPAM1	0	genome.wustl.edu	37	7	123594116	123594116	+	Silent	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	7	123594116	123594116	C	T	SNP	SPAM1	ENST00000340011	human	ensembl	74_37	+1	known	silent	c.492	p.Y164	0.879	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	SPAM1	HGNC	ENSG00000106304	tier1	-	-	14	0	0.00	13	9	40.91
SPATA16	0	genome.wustl.edu	37	3	172643275	172643275	+	Silent	SNP	T	T	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	3	172643275	172643275	T	C	SNP	SPATA16	ENST00000351008	human	ensembl	74_37	-1	known	silent	c.1089	p.Q363	0.958	NULL	NULL	-	no_errors	SPATA16	HGNC	ENSG00000144962	tier1	-	-	55	0	0.00	81	25	23.58
SPATA31A6	0	genome.wustl.edu	37	9	43627428	43627428	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	9	43627428	43627428	G	A	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	missense	c.1259	p.P420L	1.000	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				47	0	0.00	19	3	13.64
SPTBN1	0	genome.wustl.edu	37	2	54858121	54858121	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	2	54858121	54858121	G	T	SNP	SPTBN1	ENST00000356805	human	ensembl	74_37	+1	known	missense	c.2937	p.E979D	0.998	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306				21	0	0.00	34	2	5.56
SRCAP	0	genome.wustl.edu	37	16	30745119	30745119	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	16	30745119	30745119	G	C	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.6494	p.R2165T	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	tier1	-	-	33	0	0.00	32	22	40.74
SSTR2	0	genome.wustl.edu	37	17	71165533	71165533	+	Silent	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	17	71165533	71165533	G	T	SNP	SSTR2	ENST00000357585	human	ensembl	74_37	+1	known	silent	c.75	p.V25	0.008	prints_Somatstn_rcpt_2	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_2,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_5	-	no_errors	SSTR2	HGNC	ENSG00000180616	tier1	-	-	45	0	0.00	50	4	7.41
SUMO3	0	genome.wustl.edu	37	21	46226696	46226696	+	RNA	SNP	T	T	G			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	21	46226696	46226696	T	G	SNP	SUMO3	ENST00000479153	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SUMO3	HGNC	ENSG00000184900	tier1	-	-	14	0	0.00	7	7	50.00
SYTL4	0	genome.wustl.edu	37	X	99956215	99956215	+	Splice_Site	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	X	99956215	99956215	C	T	SNP	SYTL4	ENST00000454200	human	ensembl	74_37	-1	known	splice_site	c.436+1	e3+1	1.000	-	-	-	no_errors	SYTL4	HGNC	ENSG00000102362				17	0	0.00	29	4	12.12
TAS2R43	0	genome.wustl.edu	37	12	11244634	11244634	+	Silent	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	12	11244634	11244634	G	A	SNP	TAS2R43	ENST00000531678	human	ensembl	74_37	-1	known	silent	c.195	p.N65	0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374	tier1	rs200893955	-	27	0	0.00	50	8	13.79
TAS2R43	0	genome.wustl.edu	37	12	11244646	11244646	+	Silent	SNP	T	T	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	12	11244646	11244646	T	C	SNP	TAS2R43	ENST00000531678	human	ensembl	74_37	-1	known	silent	c.183	p.V61	0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374				20	0	0.00	53	8	13.11
TBC1D22A	0	genome.wustl.edu	37	22	47308003	47308003	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	22	47308003	47308003	C	T	SNP	TBC1D22A	ENST00000337137	human	ensembl	74_37	+1	known	missense	c.934	p.R312C	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22A	HGNC	ENSG00000054611				29	0	0.00	37	3	7.50
TEX10	0	genome.wustl.edu	37	9	103065971	103065971	+	Silent	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	9	103065971	103065971	G	A	SNP	TEX10	ENST00000374902	human	ensembl	74_37	-1	known	silent	c.2619	p.L873	0.896	NULL	pfam_IPI1/TEX10,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891	tier1	-	-	19	0	0.00	29	8	21.62
TLN1	0	genome.wustl.edu	37	9	35703897	35703897	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	9	35703897	35703897	C	T	SNP	TLN1	ENST00000314888	human	ensembl	74_37	-1	known	missense	c.6232	p.V2078M	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN1	HGNC	ENSG00000137076	tier1	-	-	33	0	0.00	38	18	32.14
TMEM181	0	genome.wustl.edu	37	6	159005076	159005076	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	6	159005076	159005076	G	A	SNP	TMEM181	ENST00000367090	human	ensembl	74_37	+1	known	missense	c.670	p.E224K	1.000	NULL	NULL	-	no_errors	TMEM181	HGNC	ENSG00000146433	tier1	-	-	31	0	0.00	14	4	22.22
TMEM37	0	genome.wustl.edu	37	2	120194908	120194908	+	Silent	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	2	120194908	120194908	C	T	SNP	TMEM37	ENST00000306406	human	ensembl	74_37	+1	known	silent	c.465	p.L155	0.553	NULL	NULL	-	no_errors	TMEM37	HGNC	ENSG00000171227	tier1	-	-	47	0	0.00	59	24	28.92
TNFRSF1A	0	genome.wustl.edu	37	12	6440106	6440106	+	RNA	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	12	6440106	6440106	C	T	SNP	TNFRSF1A	ENST00000535038	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	TNFRSF1A	HGNC	ENSG00000067182	tier1	rs200381667	-	10	0	0.00	21	5	19.23
TP53	0	genome.wustl.edu	37	17	7579321	7579322	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	17	7579321	7579322	CA	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.366_365	p.V122fs	0.949:0.997	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			63	0	0.00	21	29	58.00
TP53BP2	0	genome.wustl.edu	37	1	223983606	223983606	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	1	223983606	223983606	G	T	SNP	TP53BP2	ENST00000343537	human	ensembl	74_37	-1	known	missense	c.2635	p.P879T	1.000	superfamily_SH3_domain	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514	tier1	-	-	41	0	0.00	71	15	17.44
TPTE	0	genome.wustl.edu	37	21	10933879	10933879	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	21	10933879	10933879	C	T	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	missense	c.1000	p.V334I	0.995	pfam_Dual-sp_phosphatase_cat-dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157	tier1	rs149228869	-	204	0	0.00	146	39	21.08
TRERF1	0	genome.wustl.edu	37	6	42236785	42236785	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	6	42236785	42236785	G	A	SNP	TRERF1	ENST00000541110	human	ensembl	74_37	-1	known	missense	c.544	p.R182C	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496	tier1	rs201248674	-	9	0	0.00	10	14	58.33
TRIM23	0	genome.wustl.edu	37	5	64905171	64905171	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	5	64905171	64905171	G	A	SNP	TRIM23	ENST00000231524	human	ensembl	74_37	-1	known	missense	c.943	p.R315C	1.000	smart_Bbox_C	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_Znf_B-box,superfamily_P-loop_NTPase,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,pfscan_Znf_B-box,pfscan_Znf_RING,pfscan_Znf_C2H2,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	TRIM23	HGNC	ENSG00000113595	tier1	-	-	29	0	0.00	11	9	45.00
TTN	0	genome.wustl.edu	37	2	179606443	179606443	+	Silent	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	2	179606443	179606443	C	T	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	silent	c.11004	p.L3668	0.984	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	27	0	0.00	48	5	9.43
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106	tier1	-	-	45	0	0.00	47	5	9.62
U2AF2	0	genome.wustl.edu	37	19	56171899	56171901	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	19	56171899	56171901	AGA	-	DEL	U2AF2	ENST00000308924	human	ensembl	74_37	+1	known	in_frame_del	c.248_250	p.K87in_frame_del	1.000:1.000:1.000	tigrfam_U2AF_lg	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_U2AF_lg	-	no_errors	U2AF2	HGNC	ENSG00000063244	tier1			20	0	0.00	28	2	6.67
UNC80	0	genome.wustl.edu	37	2	210806065	210806065	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	2	210806065	210806065	T	C	SNP	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	missense	c.6569	p.L2190P	1.000	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406	tier1	-	-	68	0	0.00	75	10	11.76
VPREB3	0	genome.wustl.edu	37	22	24095297	24095297	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	22	24095297	24095297	G	T	SNP	VPREB3	ENST00000248948	human	ensembl	74_37	-1	known	missense	c.138	p.H46Q	0.000	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	VPREB3	HGNC	ENSG00000128218				23	0	0.00	28	2	6.67
VPS4B	0	genome.wustl.edu	37	18	61077552	61077552	+	Silent	SNP	T	T	C			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	18	61077552	61077552	T	C	SNP	VPS4B	ENST00000238497	human	ensembl	74_37	-1	known	silent	c.267	p.E89	0.999	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_MIT,pfam_IstB_ATP-bd,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_MIT,smart_AAA+_ATPase	-	no_errors	VPS4B	HGNC	ENSG00000119541	tier1	-	-	37	0	0.00	33	29	46.77
ZDHHC11	0	genome.wustl.edu	37	5	796437	796437	+	RNA	SNP	T	T	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	5	796437	796437	T	A	SNP	ZDHHC11	ENST00000503758	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZDHHC11	HGNC	ENSG00000188818	tier1	rs140929317	-	20	0	0.00	35	8	18.60
ZFHX4	0	genome.wustl.edu	37	8	77767606	77767606	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	8	77767606	77767606	G	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.8449	p.D2817Y	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	tier1	-	-	23	0	0.00	30	4	11.76
ZFHX4	0	genome.wustl.edu	37	8	77767663	77767663	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	8	77767663	77767663	G	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.8506	p.A2836S	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				21	0	0.00	35	3	7.89
ZNF540	0	genome.wustl.edu	37	19	38092021	38092021	+	RNA	SNP	C	C	A			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	19	38092021	38092021	C	A	SNP	ZNF540	ENST00000587220	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF540	HGNC	ENSG00000171817	tier1	-	-	23	0	0.00	18	6	25.00
ZNF565	0	genome.wustl.edu	37	19	36674504	36674504	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	19	36674504	36674504	C	T	SNP	ZNF565	ENST00000304116	human	ensembl	74_37	-1	known	missense	c.364	p.E122K	0.025	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF565	HGNC	ENSG00000196357	tier1	-	-	21	0	0.00	19	11	36.67
ZNF608	0	genome.wustl.edu	37	5	123983771	123983771	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49K-01A-11D-A247-09	TCGA-LN-A49K-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7fef6fc4-1732-4cb8-958c-1bc52248920b	14e2990d-4d88-4fde-ba19-cfec88030c98	5	123983771	123983771	G	T	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	missense	c.2306	p.P769H	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916	tier1	-	-	43	0	0.00	35	4	10.26
