Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCC9	0	genome.wustl.edu	37	12	21995350	21995350	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	21995350	21995350	G	T	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.3371	p.A1124D	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431	tier1	-	-	42	0	0.00	61	4	6.15
ABHD8	0	genome.wustl.edu	37	19	17411829	17411829	+	Silent	SNP	C	C	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	17411829	17411829	C	G	SNP	ABHD8	ENST00000247706	human	ensembl	74_37	-1	known	silent	c.597	p.V199	0.052	prints_Epox_hydrolase-like	pfam_AB_hydrolase_1,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD8	HGNC	ENSG00000127220	tier1	-	-	30	0	0.00	55	11	16.67
ABHD8	0	genome.wustl.edu	37	19	17412239	17412239	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	17412239	17412239	C	A	SNP	ABHD8	ENST00000247706	human	ensembl	74_37	-1	known	missense	c.187	p.A63S	0.000	NULL	pfam_AB_hydrolase_1,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD8	HGNC	ENSG00000127220				22	0	0.00	14	10	41.67
ADAM29	0	genome.wustl.edu	37	4	175898320	175898320	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	4	175898320	175898320	T	A	SNP	ADAM29	ENST00000359240	human	ensembl	74_37	+1	known	missense	c.1644	p.D548E	0.001	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	tier1	-	-	28	0	0.00	28	6	17.65
AHRR	0	genome.wustl.edu	37	5	432961	432961	+	Silent	SNP	A	A	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	5	432961	432961	A	G	SNP	AHRR	ENST00000316418	human	ensembl	74_37	+1	known	silent	c.1077	p.E359	0.000	NULL	pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	AHRR	HGNC	ENSG00000063438	tier1	-	-	34	0	0.00	12	7	36.84
AK5	0	genome.wustl.edu	37	1	77949036	77949036	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	77949036	77949036	C	G	SNP	AK5	ENST00000354567	human	ensembl	74_37	+1	known	missense	c.1094	p.T365S	0.040	NULL	pfam_Adenylate_kin,pfam_Dpy-30_motif,superfamily_P-loop_NTPase,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin,tigrfam_Adenylate_kin1	-	no_errors	AK5	HGNC	ENSG00000154027	tier1	-	-	58	0	0.00	71	29	29.00
ALDH1L1	0	genome.wustl.edu	37	3	125824715	125824715	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	125824715	125824715	G	A	SNP	ALDH1L1	ENST00000393434	human	ensembl	74_37	-1	known	missense	c.2507	p.S836F	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908				34	0	0.00	39	3	7.14
ALK	0	genome.wustl.edu	37	2	29917827	29917827	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	29917827	29917827	G	T	SNP	ALK	ENST00000389048	human	ensembl	74_37	-1	known	missense	c.841	p.H281N	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_MAM_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	tier1	-	-	19	0	0.00	18	10	35.71
ANK1	0	genome.wustl.edu	37	8	41581100	41581100	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	8	41581100	41581100	C	T	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.763	p.V255M	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	tier1	-	-	56	0	0.00	90	17	15.89
ANK2	0	genome.wustl.edu	37	4	114279791	114279791	+	Silent	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	4	114279791	114279791	G	A	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	silent	c.10017	p.A3339	0.380	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	tier1	-	-	21	0	0.00	20	6	23.08
ANKRD20A11P	0	genome.wustl.edu	37	21	15313135	15313135	+	Splice_Site	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	21	15313135	15313135	C	T	SNP	ANKRD20A11P	ENST00000428576	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	0.158	-	-	-	no_errors	ANKRD20A11P	HGNC	ENSG00000215559	tier1	-	-	55	0	0.00	55	20	26.67
ANKRD20A5P	0	genome.wustl.edu	37	18	14184340	14184341	+	RNA	INS	-	-	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	18	14184340	14184341	-	T	INS	ANKRD20A5P	ENST00000581935	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ANKRD20A5P	HGNC	ENSG00000186481	tier1			15	0	0.00	5	3	37.50
AP2B1	0	genome.wustl.edu	37	17	34044277	34044277	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	34044277	34044277	G	T	SNP	AP2B1	ENST00000312678	human	ensembl	74_37	+1	known	missense	c.2690	p.G897V	1.000	pfam_B-adaptin_app_sub_C,superfamily_Coatomer/calthrin_app_sub_C	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP2B1	HGNC	ENSG00000006125	tier1	-	-	52	0	0.00	30	18	37.50
AP3S1	0	genome.wustl.edu	37	5	115249588	115249588	+	RNA	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	5	115249588	115249588	G	A	SNP	AP3S1	ENST00000505423	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.013	-	-	-	no_errors	AP3S1	HGNC	ENSG00000177879	tier1	rs6895932	-	32	0	0.00	31	5	13.89
APLP1	0	genome.wustl.edu	37	19	36368698	36368698	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	36368698	36368698	G	T	SNP	APLP1	ENST00000221891	human	ensembl	74_37	+1	known	missense	c.1523	p.G508V	0.858	NULL	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290	tier1	-	-	12	0	0.00	39	8	17.02
ARGLU1	0	genome.wustl.edu	37	13	107211906	107211906	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	13	107211906	107211906	C	A	SNP	ARGLU1	ENST00000400198	human	ensembl	74_37	-1	known	missense	c.447	p.R149S	1.000	NULL	NULL	-	no_errors	ARGLU1	HGNC	ENSG00000134884	tier1	-	-	104	0	0.00	66	64	49.23
ARHGAP35	0	genome.wustl.edu	37	19	47503672	47503672	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	47503672	47503672	C	A	SNP	ARHGAP35	ENST00000404338	human	ensembl	74_37	+1	known	missense	c.4227	p.F1409L	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	tier1	-	-	27	0	0.00	22	15	40.54
ARHGEF18	0	genome.wustl.edu	37	19	7523441	7523442	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	7523441	7523442	GG	-	DEL	ARHGEF18	ENST00000359920	human	ensembl	74_37	+1	known	frame_shift_del	c.1661_1662	p.E555fs	1.000:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF18	HGNC	ENSG00000104880	tier1			57	0	0.00	25	14	35.90
ASB13	0	genome.wustl.edu	37	10	5682028	5682028	+	RNA	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	10	5682028	5682028	C	T	SNP	ASB13	ENST00000479033	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ASB13	HGNC	ENSG00000196372	tier1	-	-	30	0	0.00	48	6	10.91
ASIC4	0	genome.wustl.edu	37	2	220396750	220396750	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	220396750	220396750	G	C	SNP	ASIC4	ENST00000347842	human	ensembl	74_37	+1	known	missense	c.1136	p.R379P	1.000	pfam_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC4	HGNC	ENSG00000072182	tier1	-	-	18	0	0.00	6	19	76.00
ATP10D	0	genome.wustl.edu	37	4	47589054	47589054	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	4	47589054	47589054	G	T	SNP	ATP10D	ENST00000273859	human	ensembl	74_37	+1	known	missense	c.3772	p.V1258F	1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10D	HGNC	ENSG00000145246	tier1	-	-	66	0	0.00	82	47	36.43
AZU1	0	genome.wustl.edu	37	19	828365	828365	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	828365	828365	C	T	SNP	AZU1	ENST00000233997	human	ensembl	74_37	+1	known	missense	c.194	p.A65V	0.009	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	AZU1	HGNC	ENSG00000172232	tier1	-	-	12	0	0.00	4	11	73.33
BAZ2A	0	genome.wustl.edu	37	12	56994255	56994255	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	56994255	56994255	G	A	SNP	BAZ2A	ENST00000551812	human	ensembl	74_37	-1	known	missense	c.4628	p.P1543L	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	tier1	-	-	24	0	0.00	13	25	65.79
BOD1L1	0	genome.wustl.edu	37	4	13601756	13601756	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	4	13601756	13601756	G	C	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.6768	p.I2256M	1.000	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219	tier1	-	-	40	0	0.00	35	16	31.37
C10orf115	0	genome.wustl.edu	37	10	23512720	23512720	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	10	23512720	23512720	T	C	SNP	C10orf115	ENST00000376501	human	ensembl	74_37	-1	known	missense	c.94	p.R32G	0.045	NULL	NULL	-	no_errors	C10orf115	HGNC	ENSG00000204566	tier1	-	-	30	0	0.00	22	30	57.69
C10orf53	0	genome.wustl.edu	37	10	50916563	50916563	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	10	50916563	50916563	C	T	SNP	C10orf53	ENST00000374112	human	ensembl	74_37	+1	known	missense	c.374	p.S125L	0.010	NULL	NULL	-	no_errors	C10orf53	HGNC	ENSG00000178645	tier1	-	-	90	0	0.00	162	31	16.06
C14orf37	0	genome.wustl.edu	37	14	58604834	58604834	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	14	58604834	58604834	G	T	SNP	C14orf37	ENST00000267485	human	ensembl	74_37	-1	known	missense	c.1243	p.L415I	0.003	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971	tier1	-	-	53	0	0.00	43	4	8.51
C17orf50	0	genome.wustl.edu	37	17	34091541	34091541	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	34091541	34091541	G	C	SNP	C17orf50	ENST00000285023	human	ensembl	74_37	+1	known	missense	c.429	p.K143N	1.000	NULL	NULL	-	no_errors	C17orf50	HGNC	ENSG00000154768	tier1	-	-	25	0	0.00	19	8	29.63
C20orf27	0	genome.wustl.edu	37	20	3734755	3734755	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	20	3734755	3734755	C	A	SNP	C20orf27	ENST00000217195	human	ensembl	74_37	-1	known	missense	c.550	p.A184S	0.997	NULL	NULL	-	no_errors	C20orf27	HGNC	ENSG00000101220	tier1	-	-	15	0	0.00	4	6	60.00
CAPRIN2	0	genome.wustl.edu	37	12	30873757	30873757	+	Silent	SNP	T	T	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	30873757	30873757	T	A	SNP	CAPRIN2	ENST00000251071	human	ensembl	74_37	-1	known	silent	c.2136	p.S712	0.998	pfam_Caprin-1_C	pfam_Caprin-1_C,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CAPRIN2	HGNC	ENSG00000110888	tier1	-	-	25	0	0.00	30	9	23.08
CCDC22	0	genome.wustl.edu	37	X	49093493	49093493	+	RNA	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	X	49093493	49093493	G	C	SNP	CCDC22	ENST00000490300	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC22	HGNC	ENSG00000101997	tier1	-	-	18	0	0.00	31	12	27.91
CCDC37	0	genome.wustl.edu	37	3	126137616	126137616	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	126137616	126137616	G	T	SNP	CCDC37	ENST00000393425	human	ensembl	74_37	+1	known	missense	c.652	p.A218S	0.000	NULL	superfamily_SuperAg_toxin_C	-	no_errors	CCDC37	HGNC	ENSG00000163885	tier1	-	-	44	0	0.00	61	10	14.08
CCDC58	0	genome.wustl.edu	37	3	122087027	122087027	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	122087027	122087027	G	T	SNP	CCDC58	ENST00000291458	human	ensembl	74_37	-1	known	missense	c.320	p.T107K	1.000	pfam_Caffeine_induced_death_Cid2	pfam_Caffeine_induced_death_Cid2	-	no_errors	CCDC58	HGNC	ENSG00000160124	tier1	-	-	22	0	0.00	50	15	23.08
CCDC64B	0	genome.wustl.edu	37	16	3079364	3079364	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	16	3079364	3079364	C	G	SNP	CCDC64B	ENST00000389347	human	ensembl	74_37	-1	known	missense	c.1024	p.E342Q	1.000	NULL	superfamily_Sig_transdc_His_kinase_dimeric	-	no_errors	CCDC64B	HGNC	ENSG00000162069	tier1	-	-	30	0	0.00	8	7	46.67
CD34	0	genome.wustl.edu	37	1	208070876	208070876	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	208070876	208070876	G	C	SNP	CD34	ENST00000310833	human	ensembl	74_37	-1	known	missense	c.559	p.Q187E	0.002	NULL	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059	tier1	-	-	16	0	0.00	31	6	16.22
CDC27	0	genome.wustl.edu	37	17	45219311	45219311	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	45219311	45219311	T	C	SNP	CDC27	ENST00000531206	human	ensembl	74_37	-1	known	missense	c.1477	p.I493V	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897	tier1	rs140737545	-	33	0	0.00	35	6	14.63
CFL1	0	genome.wustl.edu	37	11	65623715	65623715	+	Splice_Site	SNP	T	T	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	65623715	65623715	T	A	SNP	CFL1	ENST00000308162	human	ensembl	74_37	-1	known	splice_site	c.4-2	e2-2	0.997	-	-	-	no_errors	CFL1	HGNC	ENSG00000172757	tier1	-	-	26	0	0.00	24	8	25.00
CGNL1	0	genome.wustl.edu	37	15	57754058	57754058	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	15	57754058	57754058	G	T	SNP	CGNL1	ENST00000281282	human	ensembl	74_37	+1	known	missense	c.2371	p.A791S	1.000	NULL	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849	tier1	-	-	45	0	0.00	64	4	5.88
CHAT	0	genome.wustl.edu	37	10	50854688	50854688	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	10	50854688	50854688	G	A	SNP	CHAT	ENST00000337653	human	ensembl	74_37	+1	known	missense	c.1249	p.G417R	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CHAT	HGNC	ENSG00000070748	tier1	-	-	23	0	0.00	29	24	45.28
CHKB	0	genome.wustl.edu	37	22	51018462	51018462	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	22	51018462	51018462	G	T	SNP	CHKB	ENST00000406938	human	ensembl	74_37	-1	known	missense	c.868	p.H290N	0.720	pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	-	no_errors	CHKB	HGNC	ENSG00000100288				46	0	0.00	41	3	6.82
CLN6	0	genome.wustl.edu	37	15	68504072	68504072	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	15	68504072	68504072	G	T	SNP	CLN6	ENST00000249806	human	ensembl	74_37	-1	known	missense	c.427	p.Q143K	1.000	NULL	NULL	-	no_errors	CLN6	HGNC	ENSG00000128973	tier1	-	-	30	0	0.00	29	16	35.56
CMTR2	0	genome.wustl.edu	37	16	71319539	71319539	+	Silent	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	16	71319539	71319539	C	A	SNP	CMTR2	ENST00000338099	human	ensembl	74_37	-1	known	silent	c.285	p.A95	0.684	NULL	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	CMTR2	HGNC	ENSG00000180917	tier1	-	-	11	0	0.00	6	8	57.14
CNTN6	0	genome.wustl.edu	37	3	1339605	1339605	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	1339605	1339605	G	C	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.691	p.V231L	1.000	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115	tier1	-	-	53	0	0.00	53	7	11.67
CNTN6	0	genome.wustl.edu	37	3	1444141	1444141	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	1444141	1444141	G	T	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.2957	p.S986I	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				16	0	0.00	36	4	10.00
COG4	0	genome.wustl.edu	37	16	70546283	70546283	+	Silent	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	16	70546283	70546283	G	C	SNP	COG4	ENST00000323786	human	ensembl	74_37	-1	known	silent	c.597	p.L199	1.000	pfam_COG_su4,smart_COG_su4	pfam_COG_su4,smart_COG_su4	-	no_errors	COG4	HGNC	ENSG00000103051	tier1	-	-	17	0	0.00	14	7	33.33
COPS5	0	genome.wustl.edu	37	8	67968797	67968797	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	8	67968797	67968797	T	C	SNP	COPS5	ENST00000357849	human	ensembl	74_37	-1	known	missense	c.616	p.I206V	1.000	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	COPS5	HGNC	ENSG00000121022	tier1	-	-	36	0	0.00	26	10	27.78
CPSF1	0	genome.wustl.edu	37	8	145624685	145624685	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	8	145624685	145624685	A	G	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	missense	c.1373	p.L458P	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	tier1	-	-	43	0	0.00	20	12	37.50
CRIP3	0	genome.wustl.edu	37	6	43274241	43274241	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	6	43274241	43274241	T	G	SNP	CRIP3	ENST00000274990	human	ensembl	74_37	-1	known	missense	c.343	p.K115Q	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	CRIP3	HGNC	ENSG00000146215	tier1	-	-	18	0	0.00	23	5	17.86
CSPG4	0	genome.wustl.edu	37	15	75980366	75980366	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	15	75980366	75980366	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	missense	c.3040	p.V1014M	0.418	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	tier1	-	-	43	0	0.00	71	15	17.44
CUBN	0	genome.wustl.edu	37	10	17171716	17171716	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	10	17171716	17171716	T	C	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.49	p.I17V	0.004	NULL	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	tier1	-	-	65	0	0.00	94	33	25.98
DCLRE1C	0	genome.wustl.edu	37	10	14950954	14950954	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	10	14950954	14950954	G	T	SNP	DCLRE1C	ENST00000378278	human	ensembl	74_37	-1	known	missense	c.1532	p.T511K	0.957	NULL	pfam_DRMBL	-	no_errors	DCLRE1C	HGNC	ENSG00000152457	tier1	-	-	36	0	0.00	64	19	22.89
DCLRE1C	0	genome.wustl.edu	37	10	14950955	14950955	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	10	14950955	14950955	T	G	SNP	DCLRE1C	ENST00000378278	human	ensembl	74_37	-1	known	missense	c.1531	p.T511P	0.958	NULL	pfam_DRMBL	-	no_errors	DCLRE1C	HGNC	ENSG00000152457	tier1	-	-	35	0	0.00	64	19	22.89
DDIT4	0	genome.wustl.edu	37	10	74034859	74034859	+	Silent	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	10	74034859	74034859	C	T	SNP	DDIT4	ENST00000307365	human	ensembl	74_37	+1	known	silent	c.612	p.F204	1.000	pfam_RTP801-like	pfam_RTP801-like	-	no_errors	DDIT4	HGNC	ENSG00000168209	tier1	-	-	29	0	0.00	20	17	45.95
DNAH2	0	genome.wustl.edu	37	17	7719967	7719967	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	7719967	7719967	G	A	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.9808	p.E3270K	0.992	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	tier1	-	-	68	0	0.00	49	21	30.00
DNAJC11	0	genome.wustl.edu	37	1	6694732	6694732	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	6694732	6694732	C	T	SNP	DNAJC11	ENST00000349363	human	ensembl	74_37	-1	known	missense	c.811	p.E271K	0.010	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC11	HGNC	ENSG00000007923	tier1	-	-	29	0	0.00	26	13	33.33
DOCK10	0	genome.wustl.edu	37	2	225664979	225664979	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	225664979	225664979	G	T	SNP	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	missense	c.4395	p.S1465R	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905				12	0	0.00	36	4	10.00
DPP10	0	genome.wustl.edu	37	2	116525872	116525872	+	Splice_Site	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	116525872	116525872	G	T	SNP	DPP10	ENST00000393147	human	ensembl	74_37	+1	known	splice_site	c.1126-1	e13-1	1.000	-	-	-	no_errors	DPP10	HGNC	ENSG00000175497	tier1	-	-	29	0	0.00	27	9	25.00
DPP6	0	genome.wustl.edu	37	7	154667636	154667636	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	7	154667636	154667636	A	T	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	missense	c.1904	p.Q635L	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226	tier1	-	-	95	0	0.00	24	30	55.56
DST	0	genome.wustl.edu	37	6	56470194	56470194	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	6	56470194	56470194	C	T	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.9133	p.G3045S	0.000	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914	tier1	-	-	38	0	0.00	50	19	27.54
DST	0	genome.wustl.edu	37	6	56472332	56472332	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	6	56472332	56472332	A	C	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.6995	p.I2332R	0.005	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914	tier1	-	-	47	0	0.00	47	16	25.40
DYNC1I1	0	genome.wustl.edu	37	7	95457368	95457368	+	Splice_Site	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	7	95457368	95457368	G	A	SNP	DYNC1I1	ENST00000324972	human	ensembl	74_37	+1	known	splice_site	c.366-1	e4-1	1.000	-	-	-	no_errors	DYNC1I1	HGNC	ENSG00000158560	tier1	-	-	82	0	0.00	74	57	43.51
DYNC1I2	0	genome.wustl.edu	37	2	172585301	172585301	+	Silent	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	172585301	172585301	C	A	SNP	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	silent	c.1332	p.V444	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380				68	0	0.00	56	3	5.00
DYNC2H1	0	genome.wustl.edu	37	11	103031676	103031676	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	103031676	103031676	G	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.4394	p.C1465F	0.998	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	tier1	-	-	27	0	0.00	38	4	9.52
EDC3	0	genome.wustl.edu	37	15	74925075	74925075	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	15	74925075	74925075	C	T	SNP	EDC3	ENST00000315127	human	ensembl	74_37	-1	known	missense	c.1405	p.E469K	1.000	superfamily_YjeF_N_dom	pfam_YjeF_N_dom,pfam_FDF_dom,superfamily_YjeF_N_dom	-	no_errors	EDC3	HGNC	ENSG00000179151	tier1	-	-	40	0	0.00	53	5	8.62
EMC1	0	genome.wustl.edu	37	1	19559220	19559220	+	Nonsense_Mutation	SNP	A	A	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	19559220	19559220	A	T	SNP	EMC1	ENST00000477853	human	ensembl	74_37	-1	known	nonsense	c.1680	p.Y560*	1.000	NULL	pfam_DUF1620,superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	EMC1	HGNC	ENSG00000127463	tier1	-	-	54	0	0.00	52	16	23.53
ENSG00000216191	0	genome.wustl.edu	37	2	50923314	50923317	+	RNA	DEL	GTGT	GTGT	-			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	GTGT	GTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	50923314	50923317	GTGT	-	DEL	ENSG00000216191	ENST00000401372	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.006:0.004:0.003:0.002	-	-	-	no_errors	AC009234.2	Clone_based_ensembl_gene	ENSG00000216191	tier1			8	0	0.00	2	2	50.00
ENSG00000216197	0	genome.wustl.edu	37	21	43720386	43720387	+	RNA	DEL	GT	GT	-			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	21	43720386	43720387	GT	0	DEL	ENSG00000216197	ENST00000401378	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	AP001623.1	Clone_based_ensembl_gene	ENSG00000216197				51	0	0.00	97	7	6.73
ENSG00000225782	0	genome.wustl.edu	37	1	220835947	220835947	+	RNA	SNP	A	A	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	220835947	220835947	A	G	SNP	ENSG00000225782	ENST00000446040	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-322F10.2	Clone_based_vega_gene	ENSG00000225782	tier1	-	-	50	0	0.00	69	17	19.77
ENSG00000225946	0	genome.wustl.edu	37	7	100608197	100608198	+	RNA	INS	-	-	GGG			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	7	100608197	100608198	-	GGG	INS	ENSG00000225946	ENST00000420080	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-395B7.2	Clone_based_vega_gene	ENSG00000225946	tier1			19	0	0.00	19	5	20.83
ENSG00000228242	0	genome.wustl.edu	37	3	14189622	14189622	+	RNA	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	14189622	14189622	C	T	SNP	ENSG00000228242	ENST00000420253	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC093495.4	Clone_based_vega_gene	ENSG00000228242	tier1	-	-	19	0	0.00	3	10	76.92
ENSG00000255622	0	genome.wustl.edu	37	5	140535760	140535760	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	5	140535760	140535760	G	A	SNP	ENSG00000255622	ENST00000539533	human	ensembl	74_37	+1	known	missense	c.184	p.A62T	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB17	Uniprot_gn	ENSG00000255622	tier1	-	-	26	0	0.00	14	15	51.72
ENSG00000257607	0	genome.wustl.edu	37	7	1098155	1098155	+	RNA	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	7	1098155	1098155	C	A	SNP	ENSG00000257607	ENST00000549241	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.755	-	-	-	no_errors	RP11-449P15.1	Clone_based_vega_gene	ENSG00000257607	tier1	-	-	10	0	0.00	2	5	71.43
ENSG00000259180	0	genome.wustl.edu	37	15	55972660	55972661	+	RNA	INS	-	-	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	15	55972660	55972661	-	T	INS	ENSG00000259180	ENST00000561155	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-420M1.2	Clone_based_vega_gene	ENSG00000259180	tier1			13	0	0.00	18	3	14.29
ENSG00000269026	0	genome.wustl.edu	37	19	58193488	58193488	+	RNA	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	58193488	58193488	C	T	SNP	ENSG00000269026	ENST00000599221	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC003006.7	Clone_based_vega_gene	ENSG00000269026	tier1	-	-	79	0	0.00	60	25	29.41
ENSG00000271401	0	genome.wustl.edu	37	2	179509452	179509452	+	RNA	SNP	A	A	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	179509452	179509452	A	T	SNP	ENSG00000271401	ENST00000605021	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.529	-	-	-	no_errors	RP11-171I2.3	Clone_based_vega_gene	ENSG00000271401	tier1	-	-	16	0	0.00	5	9	64.29
EPHA8	0	genome.wustl.edu	37	1	22903214	22903214	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	22903214	22903214	G	A	SNP	EPHA8	ENST00000166244	human	ensembl	74_37	+1	known	missense	c.664	p.D222N	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA8	HGNC	ENSG00000070886	tier1	-	-	50	0	0.00	46	24	34.29
ESPNP	0	genome.wustl.edu	37	1	17034125	17034126	+	RNA	INS	-	-	AGCT			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	17034125	17034126	-	AGCT	INS	ESPNP	ENST00000492551	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	ESPNP	HGNC	ENSG00000268869	tier1			8	0	0.00	4	3	42.86
ESRRG	0	genome.wustl.edu	37	1	216741436	216741436	+	Silent	SNP	C	C	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	216741436	216741436	C	G	SNP	ESRRG	ENST00000408911	human	ensembl	74_37	-1	known	silent	c.594	p.V198	0.978	superfamily_Nucl_hormone_rcpt_ligand-bd,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	ESRRG	HGNC	ENSG00000196482	tier1	-	-	39	0	0.00	85	10	10.53
ESYT2	0	genome.wustl.edu	37	7	158534278	158534278	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	7	158534278	158534278	C	T	SNP	ESYT2	ENST00000251527	human	ensembl	74_37	-1	known	missense	c.2185	p.A729T	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	ESYT2	HGNC	ENSG00000117868	tier1	-	-	60	0	0.00	32	11	25.00
FAM111A	0	genome.wustl.edu	37	11	58920609	58920609	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	58920609	58920609	C	T	SNP	FAM111A	ENST00000361723	human	ensembl	74_37	+1	known	nonsense	c.1468	p.Q490*	0.025	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111A	HGNC	ENSG00000166801	tier1	-	-	22	0	0.00	10	5	33.33
FAM19A4	0	genome.wustl.edu	37	3	68802149	68802149	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	68802149	68802149	C	T	SNP	FAM19A4	ENST00000295569	human	ensembl	74_37	-1	known	missense	c.151	p.G51R	1.000	pfam_Chemokine-like_FAM19A2	pfam_Chemokine-like_FAM19A2	-	no_errors	FAM19A4	HGNC	ENSG00000163377	tier1	-	-	16	0	0.00	9	14	60.87
FAM230B	0	genome.wustl.edu	37	22	21538152	21538152	+	RNA	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	22	21538152	21538152	C	A	SNP	FAM230B	ENST00000451257	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM230B	HGNC	ENSG00000215498				11	0	0.00	8	8	50.00
FAM27E3	0	genome.wustl.edu	37	9	67786176	67786176	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	9	67786176	67786176	G	A	SNP	FAM27E3	ENST00000455764	human	ensembl	74_37	-1	known	missense	c.79	p.R27C	0.010	NULL	NULL	-	no_errors	FAM27E3	HGNC	ENSG00000232833	tier1	rs200531573	-	9	0	0.00	4	5	55.56
FAM86C2P	0	genome.wustl.edu	37	11	67560494	67560494	+	RNA	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	67560494	67560494	T	C	SNP	FAM86C2P	ENST00000528089	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAM86C2P	HGNC	ENSG00000160172				58	0	0.00	41	3	6.82
FANCF	0	genome.wustl.edu	37	11	22647031	22647031	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	22647031	22647031	T	C	SNP	FANCF	ENST00000327470	human	ensembl	74_37	-1	known	missense	c.326	p.Y109C	0.000	NULL	NULL	-	no_errors	FANCF	HGNC	ENSG00000183161	tier1	-	-	47	0	0.00	13	20	60.61
FLJ40288	0	genome.wustl.edu	37	7	132412352	132412352	+	Silent	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	7	132412352	132412352	G	A	SNP	FLJ40288	ENST00000332558	human	ensembl	74_37	+1	putative	silent	c.204	p.L68	0.001	NULL	NULL	-	no_errors	AC009365.3	Clone_based_vega_gene	ENSG00000183470	tier1	-	-	31	0	0.00	49	10	16.95
FNBP1	0	genome.wustl.edu	37	9	132681440	132681440	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	9	132681440	132681440	C	A	SNP	FNBP1	ENST00000443566	human	ensembl	74_37	-1	known	missense	c.52	p.V18F	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	FNBP1	HGNC	ENSG00000187239	tier1	-	-	34	0	0.00	24	14	36.84
FNDC3A	0	genome.wustl.edu	37	13	49580412	49580412	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	13	49580412	49580412	A	G	SNP	FNDC3A	ENST00000492622	human	ensembl	74_37	+1	known	missense	c.86	p.D29G	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531	tier1	-	-	36	0	0.00	18	11	37.93
FOCAD	0	genome.wustl.edu	37	9	20982419	20982419	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	9	20982419	20982419	G	T	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	missense	c.4702	p.A1568S	0.166	pfam_DUF3028	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				31	0	0.00	23	2	8.00
FOXD4L5	0	genome.wustl.edu	37	9	70177146	70177146	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	9	70177146	70177146	C	T	SNP	FOXD4L5	ENST00000377420	human	ensembl	74_37	-1	known	missense	c.838	p.G280R	0.115	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L5	HGNC	ENSG00000204779	tier1	-	-	61	0	0.00	83	11	11.70
GALE	0	genome.wustl.edu	37	1	24125155	24125155	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	24125155	24125155	C	G	SNP	GALE	ENST00000374497	human	ensembl	74_37	-1	known	missense	c.187	p.E63Q	1.000	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,tigrfam_GalE	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_Male_sterile_NAD-bd,pfam_PKS_KR,prints_Nuc_sugar_epim,tigrfam_GalE	-	no_errors	GALE	HGNC	ENSG00000117308				14	0	0.00	17	4	19.05
GGN	0	genome.wustl.edu	37	19	38876738	38876738	+	Silent	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	38876738	38876738	G	T	SNP	GGN	ENST00000334928	human	ensembl	74_37	-1	known	silent	c.1164	p.G388	0.990	NULL	NULL	-	no_errors	GGN	HGNC	ENSG00000179168	tier1	-	-	15	0	0.00	22	10	31.25
GOLGA6L4	0	genome.wustl.edu	37	15	84911216	84911216	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	15	84911216	84911216	C	T	SNP	GOLGA6L4	ENST00000422563	human	ensembl	74_37	+1	known	missense	c.625	p.P209S	0.000	NULL	NULL	-	no_errors	GOLGA6L4	HGNC	ENSG00000184206	tier1	-	-	36	0	0.00	35	8	18.60
GP6	0	genome.wustl.edu	37	19	55526285	55526285	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	55526285	55526285	G	A	SNP	GP6	ENST00000310373	human	ensembl	74_37	-1	known	missense	c.1028	p.A343V	0.000	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053	tier1	-	-	54	0	0.00	14	39	73.58
GP6	0	genome.wustl.edu	37	19	55526286	55526286	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	55526286	55526286	C	A	SNP	GP6	ENST00000310373	human	ensembl	74_37	-1	known	missense	c.1027	p.A343S	0.000	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053	tier1	-	-	54	0	0.00	13	40	75.47
GRIA1	0	genome.wustl.edu	37	5	153175034	153175034	+	Splice_Site	SNP	A	A	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	5	153175034	153175034	A	G	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	splice_site	c.2301-2	e14-2	1.000	-	-	-	no_errors	GRIA1	HGNC	ENSG00000155511	tier1	-	-	65	0	0.00	39	15	27.78
GRIK4	0	genome.wustl.edu	37	11	120776146	120776146	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	120776146	120776146	G	C	SNP	GRIK4	ENST00000527524	human	ensembl	74_37	+1	known	missense	c.1420	p.G474R	1.000	pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403	tier1	-	-	17	0	0.00	7	8	53.33
GRK7	0	genome.wustl.edu	37	3	141499459	141499459	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	141499459	141499459	C	T	SNP	GRK7	ENST00000264952	human	ensembl	74_37	+1	known	missense	c.856	p.R286C	0.033	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK7	HGNC	ENSG00000114124	tier1	-	-	26	0	0.00	59	15	20.27
GSE1	0	genome.wustl.edu	37	16	85689343	85689343	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	16	85689343	85689343	C	A	SNP	GSE1	ENST00000253458	human	ensembl	74_37	+1	known	missense	c.809	p.S270Y	1.000	NULL	pfam_GSE-like	-	no_errors	GSE1	HGNC	ENSG00000131149	tier1	-	-	39	0	0.00	19	9	32.14
H2AFV	0	genome.wustl.edu	37	7	44874131	44874131	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	7	44874131	44874131	A	G	SNP	H2AFV	ENST00000308153	human	ensembl	74_37	-1	known	missense	c.356	p.I119T	1.000	smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	H2AFV	HGNC	ENSG00000105968	tier1	rs114398265	-	53	0	0.00	21	7	25.00
HEATR1	0	genome.wustl.edu	37	1	236751319	236751319	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	236751319	236751319	T	C	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	missense	c.1555	p.K519E	0.993	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285	tier1	-	-	44	0	0.00	67	22	24.72
HEPH	0	genome.wustl.edu	37	X	65411972	65411972	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	X	65411972	65411972	A	T	SNP	HEPH	ENST00000519389	human	ensembl	74_37	+1	known	missense	c.1226	p.D409V	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	tier1	-	-	20	0	0.00	34	21	38.18
HSD3B7	0	genome.wustl.edu	37	16	30999400	30999400	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	16	30999400	30999400	G	T	SNP	HSD3B7	ENST00000297679	human	ensembl	74_37	+1	known	missense	c.1006	p.D336Y	0.907	NULL	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,pfam_dTDP_dehydrorham_reduct,pfam_NmrA	-	no_errors	HSD3B7	HGNC	ENSG00000099377	tier1	-	-	49	0	0.00	49	11	18.33
HTATIP2	0	genome.wustl.edu	37	11	20388759	20388759	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	20388759	20388759	G	T	SNP	HTATIP2	ENST00000419348	human	ensembl	74_37	+1	known	missense	c.337	p.A113S	0.033	pfam_Semialdehyde_DH_NAD-bd	pfam_Semialdehyde_DH_NAD-bd	-	no_errors	HTATIP2	HGNC	ENSG00000109854				28	0	0.00	40	3	6.98
HTRA1	0	genome.wustl.edu	37	10	124273783	124273783	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	10	124273783	124273783	G	A	SNP	HTRA1	ENST00000368984	human	ensembl	74_37	+1	known	missense	c.1351	p.V451I	0.997	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Peptidase_S1,pfam_PDZ,pfam_Kazal_dom,pfam_IGFBP-like,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_IGFBP-like,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA1	HGNC	ENSG00000166033	tier1	rs149822364	-	74	0	0.00	13	19	59.38
ICAM2	0	genome.wustl.edu	37	17	62082482	62082482	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	62082482	62082482	T	G	SNP	ICAM2	ENST00000412356	human	ensembl	74_37	-1	known	missense	c.313	p.N105H	0.000	pfam_ICAM_N	pfam_ICAM_N,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM2	HGNC	ENSG00000108622	tier1	-	-	51	0	0.00	31	13	29.55
IFT172	0	genome.wustl.edu	37	2	27668210	27668210	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	27668210	27668210	A	G	SNP	IFT172	ENST00000260570	human	ensembl	74_37	-1	known	missense	c.5021	p.L1674P	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002	tier1	-	-	32	0	0.00	29	4	12.12
JAM3	0	genome.wustl.edu	37	11	134014718	134014718	+	Silent	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	134014718	134014718	G	A	SNP	JAM3	ENST00000529443	human	ensembl	74_37	+1	known	silent	c.576	p.P192	0.081	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	JAM3	HGNC	ENSG00000166086	tier1	-	-	46	0	0.00	20	11	35.48
KALRN	0	genome.wustl.edu	37	3	124174024	124174024	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	124174024	124174024	C	A	SNP	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	missense	c.3547	p.Q1183K	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	tier1	-	-	34	0	0.00	36	22	37.93
KIT	0	genome.wustl.edu	37	4	55593704	55593704	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	4	55593704	55593704	T	G	SNP	KIT	ENST00000288135	human	ensembl	74_37	+1	known	missense	c.1770	p.S590R	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404	tier1	-	-	30	0	0.00	29	17	36.96
KLHL6	0	genome.wustl.edu	37	3	183273193	183273193	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	183273193	183273193	G	T	SNP	KLHL6	ENST00000341319	human	ensembl	74_37	-1	known	missense	c.249	p.F83L	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578	tier1	-	-	24	0	0.00	21	8	27.59
KLRF2	0	genome.wustl.edu	37	12	10048387	10048387	+	Silent	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	10048387	10048387	C	T	SNP	KLRF2	ENST00000535540	human	ensembl	74_37	+1	known	silent	c.579	p.C193	0.994	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	KLRF2	HGNC	ENSG00000256797	tier1	-	-	33	0	0.00	47	4	7.84
KRT2	0	genome.wustl.edu	37	12	53045389	53045389	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	53045389	53045389	C	T	SNP	KRT2	ENST00000309680	human	ensembl	74_37	-1	known	missense	c.538	p.E180K	1.000	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867	tier1	-	-	41	0	0.00	70	16	18.60
KRT73	0	genome.wustl.edu	37	12	53009995	53009995	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	53009995	53009995	G	C	SNP	KRT73	ENST00000305748	human	ensembl	74_37	-1	known	missense	c.617	p.S206W	0.041	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT73	HGNC	ENSG00000186049	tier1	-	-	58	0	0.00	89	17	16.04
KRTAP2-2	0	genome.wustl.edu	37	17	39211182	39211182	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	39211182	39211182	C	T	SNP	KRTAP2-2	ENST00000542910	human	ensembl	74_37	-1	known	nonsense	c.282	p.W94*	1.000	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP2-2	HGNC	ENSG00000214518	tier1	rs201126380	-	33	0	0.00	16	12	42.86
LPAL2	0	genome.wustl.edu	37	6	160888611	160888611	+	RNA	SNP	C	C	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	6	160888611	160888611	C	G	SNP	LPAL2	ENST00000335388	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LPAL2	HGNC	ENSG00000213071	tier1	-	-	27	0	0.00	49	9	15.52
LPP	0	genome.wustl.edu	37	3	188242454	188242454	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	188242454	188242454	G	T	SNP	LPP	ENST00000312675	human	ensembl	74_37	+1	known	missense	c.308	p.G103V	0.992	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LPP	HGNC	ENSG00000145012				42	0	0.00	38	3	7.32
LRCH1	0	genome.wustl.edu	37	13	47243194	47243194	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	13	47243194	47243194	G	T	SNP	LRCH1	ENST00000389798	human	ensembl	74_37	+1	known	missense	c.482	p.C161F	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141				45	0	0.00	51	3	5.56
LRRK1	0	genome.wustl.edu	37	15	101597188	101597188	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	15	101597188	101597188	C	G	SNP	LRRK1	ENST00000388948	human	ensembl	74_37	+1	known	missense	c.4460	p.P1487R	0.975	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	tier1	-	-	12	0	0.00	11	5	31.25
MAF1	0	genome.wustl.edu	37	8	145160882	145160882	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	8	145160882	145160882	C	A	SNP	MAF1	ENST00000322428	human	ensembl	74_37	+1	known	nonsense	c.194	p.S65*	0.690	pfam_Maf1,pirsf_Maf1	pfam_Maf1,pirsf_Maf1	-	no_errors	MAF1	HGNC	ENSG00000179632	tier1	-	-	20	0	0.00	8	6	42.86
MAP1LC3A	0	genome.wustl.edu	37	20	33147159	33147159	+	Silent	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	20	33147159	33147159	C	T	SNP	MAP1LC3A	ENST00000360668	human	ensembl	74_37	+1	known	silent	c.105	p.I35	0.870	pfam_Atg8_fam	pfam_Atg8_fam,pfam_Atg12	-	no_errors	MAP1LC3A	HGNC	ENSG00000101460	tier1	-	-	9	0	0.00	12	12	50.00
MAPK6	0	genome.wustl.edu	37	15	52353571	52353571	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	15	52353571	52353571	C	T	SNP	MAPK6	ENST00000261845	human	ensembl	74_37	+1	known	missense	c.941	p.P314L	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK6	HGNC	ENSG00000069956	tier1	-	-	50	0	0.00	25	13	34.21
MARCH10	0	genome.wustl.edu	37	17	60865859	60865859	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	60865859	60865859	G	T	SNP	MARCH10	ENST00000311269	human	ensembl	74_37	-1	known	missense	c.192	p.S64R	0.046	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH10	HGNC	ENSG00000173838	tier1	-	-	68	0	0.00	38	15	28.30
MCC	0	genome.wustl.edu	37	5	112420928	112420928	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	5	112420928	112420928	C	T	SNP	MCC	ENST00000302475	human	ensembl	74_37	-1	known	missense	c.908	p.R303H	1.000	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444	tier1	-	-	50	0	0.00	62	8	11.43
MCTP2	0	genome.wustl.edu	37	15	94899379	94899379	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	15	94899379	94899379	G	T	SNP	MCTP2	ENST00000357742	human	ensembl	74_37	+1	known	missense	c.1019	p.R340L	1.000	NULL	pfam_C2_dom,pfam_PRibTrfase_C,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	MCTP2	HGNC	ENSG00000140563				38	0	0.00	76	4	5.00
MICALL1	0	genome.wustl.edu	37	22	38333778	38333778	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	22	38333778	38333778	G	T	SNP	MICALL1	ENST00000215957	human	ensembl	74_37	+1	known	nonsense	c.2449	p.E817*	1.000	pfam_DUF3585	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICALL1	HGNC	ENSG00000100139	tier1	-	-	27	0	0.00	25	5	16.67
MIR106B	0	genome.wustl.edu	37	7	99691652	99691652	+	RNA	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	7	99691652	99691652	C	T	SNP	MIR106B	ENST00000385301	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR106B	HGNC	ENSG00000208036	tier1	-	-	27	0	0.00	30	18	37.50
MOB4	0	genome.wustl.edu	37	2	198400257	198400257	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	198400257	198400257	A	G	SNP	MOB4	ENST00000323303	human	ensembl	74_37	+1	known	missense	c.127	p.I43V	1.000	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB4	HGNC	ENSG00000115540	tier1	-	-	24	0	0.00	41	12	22.64
MS4A4E	0	genome.wustl.edu	37	11	59982060	59982060	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	59982060	59982060	C	T	SNP	MS4A4E	ENST00000427611	human	ensembl	74_37	-1	known	missense	c.262	p.E88K	0.726	NULL	NULL	-	no_errors	MS4A4E	HGNC	ENSG00000214787	tier1	-	-	28	0	0.00	20	6	23.08
MTR	0	genome.wustl.edu	37	1	236969525	236969525	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	236969525	236969525	G	C	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	missense	c.331	p.E111Q	1.000	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_MetH,pfscan_S_MeTrfase,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				18	0	0.00	67	8	10.67
MUC12	0	genome.wustl.edu	37	7	100638793	100638793	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	7	100638793	100638793	A	G	SNP	MUC12	ENST00000536621	human	ensembl	74_37	+1	known	missense	c.4949	p.N1650S	0.004	NULL	pfam_SEA_dom	-	no_errors	MUC12	HGNC	ENSG00000205277	tier1	-	-	101	0	0.00	84	53	38.69
MUM1L1	0	genome.wustl.edu	37	X	105450626	105450626	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	X	105450626	105450626	C	G	SNP	MUM1L1	ENST00000337685	human	ensembl	74_37	+1	known	missense	c.1201	p.Q401E	0.927	NULL	superfamily_PyrdxlP-dep_Trfase	-	no_errors	MUM1L1	HGNC	ENSG00000157502	tier1	-	-	24	0	0.00	25	27	51.92
NAE1	0	genome.wustl.edu	37	16	66847533	66847533	+	Nonsense_Mutation	SNP	A	A	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	16	66847533	66847533	A	C	SNP	NAE1	ENST00000290810	human	ensembl	74_37	-1	known	nonsense	c.968	p.L323*	1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	NAE1	HGNC	ENSG00000159593	tier1	-	-	32	0	0.00	24	30	55.56
NALCN	0	genome.wustl.edu	37	13	101910850	101910850	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	13	101910850	101910850	T	C	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.1210	p.N404D	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	tier1	-	-	29	0	0.00	24	9	27.27
NARF	0	genome.wustl.edu	37	17	80439050	80439050	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	80439050	80439050	G	T	SNP	NARF	ENST00000309794	human	ensembl	74_37	+1	known	missense	c.732	p.L244F	0.000	pfam_Fe_hydrogenase_lsu_C,superfamily_Fe_hydrogenase	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARF	HGNC	ENSG00000141562	tier1	-	-	26	0	0.00	13	31	70.45
NBEAL2	0	genome.wustl.edu	37	3	47039969	47039969	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	47039969	47039969	G	T	SNP	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	missense	c.3135	p.M1045I	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				24	0	0.00	14	3	17.65
NEK1	0	genome.wustl.edu	37	4	170520292	170520292	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	4	170520292	170520292	G	A	SNP	NEK1	ENST00000507142	human	ensembl	74_37	-1	known	nonsense	c.271	p.R91*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601	tier1	-	-	20	0	0.00	26	9	25.71
NFKBIZ	0	genome.wustl.edu	37	3	101575996	101575996	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	101575996	101575996	T	G	SNP	NFKBIZ	ENST00000326172	human	ensembl	74_37	+1	known	missense	c.1904	p.L635R	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIZ	HGNC	ENSG00000144802	tier1	rs1043339	-	25	0	0.00	37	11	22.92
NLRP13	0	genome.wustl.edu	37	19	56416358	56416358	+	Silent	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	56416358	56416358	C	T	SNP	NLRP13	ENST00000342929	human	ensembl	74_37	-1	known	silent	c.2568	p.K856	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	tier1	-	-	42	0	0.00	2	51	96.23
NLRP13	0	genome.wustl.edu	37	19	56424072	56424072	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	56424072	56424072	G	T	SNP	NLRP13	ENST00000342929	human	ensembl	74_37	-1	known	missense	c.1111	p.L371I	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572	tier1	-	-	38	0	0.00	35	16	31.37
NOTCH2NL	0	genome.wustl.edu	37	1	145290819	145290819	+	RNA	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	145290819	145290819	G	A	SNP	NOTCH2NL	ENST00000479995	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NOTCH2NL	HGNC	ENSG00000213240	tier1	rs4659318	-	8	0	0.00	23	7	23.33
NPAT	0	genome.wustl.edu	37	11	108031840	108031840	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	108031840	108031840	C	G	SNP	NPAT	ENST00000278612	human	ensembl	74_37	-1	known	missense	c.3973	p.E1325Q	1.000	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308	tier1	-	-	47	0	0.00	24	17	41.46
NRDE2	0	genome.wustl.edu	37	14	90770449	90770449	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	14	90770449	90770449	T	C	SNP	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	missense	c.835	p.T279A	1.000	NULL	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720	tier1	-	-	50	0	0.00	29	16	35.56
NRXN1	0	genome.wustl.edu	37	2	50573871	50573871	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	50573871	50573871	T	C	SNP	NRXN1	ENST00000342183	human	ensembl	74_37	-1	known	missense	c.217	p.I73V	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Neurexin-like,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	tier1	-	-	9	0	0.00	16	5	23.81
NRXN2	0	genome.wustl.edu	37	11	64428408	64428408	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	64428408	64428408	G	A	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	nonsense	c.2002	p.R668*	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	tier1	-	-	14	0	0.00	13	6	31.58
OPTN	0	genome.wustl.edu	37	10	13151284	13151284	+	Silent	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	10	13151284	13151284	G	A	SNP	OPTN	ENST00000263036	human	ensembl	74_37	+1	known	silent	c.162	p.L54	0.977	pfam_NEMO_N	pfam_NEMO_N	-	no_errors	OPTN	HGNC	ENSG00000123240				12	0	0.00	18	4	18.18
OR13C5	0	genome.wustl.edu	37	9	107361179	107361182	+	Frame_Shift_Del	DEL	GTTA	GTTA	-			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	GTTA	GTTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	9	107361179	107361182	GTTA	0	DEL	OR13C5	ENST00000374779	human	ensembl	74_37	-1	known	frame_shift_del	c.516_513	p.N171fs	0.000:0.000:0.000:0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C5	HGNC	ENSG00000255800				62	0	0.00	91	8	8.08
OR1L6	0	genome.wustl.edu	37	9	125512324	125512324	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	9	125512324	125512324	C	A	SNP	OR1L6	ENST00000373684	human	ensembl	74_37	+1	known	missense	c.306	p.N102K	0.949	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L6	HGNC	ENSG00000171459	tier1	-	-	62	0	0.00	26	45	63.38
OR2M7	0	genome.wustl.edu	37	1	248487170	248487171	+	Frame_Shift_Ins	INS	-	-	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	248487170	248487171	-	G	INS	OR2M7	ENST00000317965	human	ensembl	74_37	-1	known	frame_shift_ins	c.701_700	p.R234fs	0.001:0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M7	HGNC	ENSG00000177186	tier1			85	0	0.00	153	48	23.88
OR2M7	0	genome.wustl.edu	37	1	248487173	248487174	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	248487173	248487174	CC	-	DEL	OR2M7	ENST00000317965	human	ensembl	74_37	-1	known	frame_shift_del	c.698_697	p.G233fs	0.335:0.354	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M7	HGNC	ENSG00000177186	tier1			88	0	0.00	163	48	22.75
OR2T3	0	genome.wustl.edu	37	1	248637291	248637291	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	248637291	248637291	G	A	SNP	OR2T3	ENST00000359594	human	ensembl	74_37	+1	known	missense	c.640	p.A214T	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T3	HGNC	ENSG00000196539				23	0	0.00	58	8	12.12
OR4C16	0	genome.wustl.edu	37	11	55339985	55339985	+	Silent	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	55339985	55339985	C	T	SNP	OR4C16	ENST00000314634	human	ensembl	74_37	+1	known	silent	c.382	p.L128	0.839	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C16	HGNC	ENSG00000181935	tier1	-	-	52	0	0.00	19	39	67.24
OR9G1	0	genome.wustl.edu	37	11	56468326	56468326	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	56468326	56468326	T	C	SNP	OR9G1	ENST00000312153	human	ensembl	74_37	+1	known	missense	c.463	p.S155P	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9G1	HGNC	ENSG00000174914	tier1	-	-	114	0	0.00	91	17	15.74
PARPBP	0	genome.wustl.edu	37	12	102558360	102558360	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	102558360	102558360	C	T	SNP	PARPBP	ENST00000358383	human	ensembl	74_37	+1	known	nonsense	c.640	p.R214*	0.998	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	PARPBP	HGNC	ENSG00000185480	tier1	-	-	35	0	0.00	27	12	30.77
PCBP3	0	genome.wustl.edu	37	21	47316257	47316257	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	21	47316257	47316257	G	A	SNP	PCBP3	ENST00000400314	human	ensembl	74_37	+1	known	missense	c.146	p.R49H	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP3	HGNC	ENSG00000183570	tier1	-	-	61	0	0.00	55	59	51.75
PCDH10	0	genome.wustl.edu	37	4	134073552	134073552	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	4	134073552	134073552	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.2257	p.A753T	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	tier1	-	-	28	0	0.00	25	11	30.56
PCDHA10	0	genome.wustl.edu	37	5	140237801	140237801	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	5	140237801	140237801	C	T	SNP	PCDHA10	ENST00000307360	human	ensembl	74_37	+1	known	missense	c.2168	p.A723V	0.305	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120	tier1	-	-	57	0	0.00	20	20	50.00
PEAK1	0	genome.wustl.edu	37	15	77471471	77471471	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	15	77471471	77471471	C	T	SNP	PEAK1	ENST00000312493	human	ensembl	74_37	-1	known	missense	c.2798	p.R933H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	PEAK1	HGNC	ENSG00000173517				28	0	0.00	36	2	5.26
PHIP	0	genome.wustl.edu	37	6	79655198	79655198	+	Silent	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	6	79655198	79655198	C	T	SNP	PHIP	ENST00000275034	human	ensembl	74_37	-1	known	silent	c.4647	p.V1549	0.998	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	tier1	-	-	42	0	0.00	35	11	23.91
PI4KA	0	genome.wustl.edu	37	22	21064264	21064264	+	Silent	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	22	21064264	21064264	G	C	SNP	PI4KA	ENST00000255882	human	ensembl	74_37	-1	known	silent	c.6105	p.V2035	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	tier1	-	-	48	0	0.00	35	15	30.00
PIGK	0	genome.wustl.edu	37	1	77620211	77620211	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	77620211	77620211	G	T	SNP	PIGK	ENST00000370812	human	ensembl	74_37	-1	known	missense	c.909	p.F303L	1.000	NULL	pfam_Peptidase_C13,prints_Peptidase_C13	-	no_errors	PIGK	HGNC	ENSG00000142892	tier1	-	-	49	0	0.00	62	18	22.50
POU2F1	0	genome.wustl.edu	37	1	167343527	167343527	+	Silent	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	167343527	167343527	C	T	SNP	POU2F1	ENST00000367866	human	ensembl	74_37	+1	known	silent	c.585	p.I195	0.879	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F1	HGNC	ENSG00000143190	tier1	-	-	32	0	0.00	68	10	12.82
PPP1R26	0	genome.wustl.edu	37	9	138377490	138377490	+	Silent	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	9	138377490	138377490	G	A	SNP	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	silent	c.1134	p.Q378	1.000	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422	tier1	-	-	61	0	0.00	38	17	30.91
PPP4R1L	0	genome.wustl.edu	37	20	56814841	56814841	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	20	56814841	56814841	G	C	SNP	PPP4R1L	ENST00000497138	human	ensembl	74_37	-1	known	missense	c.373	p.Q125E	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PPP4R1L	HGNC	ENSG00000124224	tier1	-	-	30	0	0.00	17	6	26.09
PPP4R4	0	genome.wustl.edu	37	14	94712823	94712823	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	14	94712823	94712823	G	C	SNP	PPP4R4	ENST00000304338	human	ensembl	74_37	+1	known	missense	c.1558	p.D520H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R4	HGNC	ENSG00000119698	tier1	-	-	36	0	0.00	33	21	38.89
PRKCB	0	genome.wustl.edu	37	16	24105592	24105592	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	16	24105592	24105592	A	T	SNP	PRKCB	ENST00000303531	human	ensembl	74_37	+1	known	missense	c.795	p.E265D	0.999	superfamily_C2_dom,smart_C2_dom,pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	tier1	-	-	39	0	0.00	44	27	37.50
PRKG2	0	genome.wustl.edu	37	4	82027067	82027067	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	4	82027067	82027067	G	T	SNP	PRKG2	ENST00000264399	human	ensembl	74_37	-1	known	missense	c.1963	p.Q655K	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_cGMP-dependent_protein_kinase,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669	tier1	-	-	38	0	0.00	25	11	30.56
PROM1	0	genome.wustl.edu	37	4	16010698	16010698	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	4	16010698	16010698	T	C	SNP	PROM1	ENST00000447510	human	ensembl	74_37	-1	known	missense	c.1175	p.D392G	0.000	pfam_Prominin	pfam_Prominin	-	no_errors	PROM1	HGNC	ENSG00000007062	tier1	-	-	30	0	0.00	22	15	40.54
PRRC2B	0	genome.wustl.edu	37	9	134346214	134346214	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	9	134346214	134346214	C	T	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.1951	p.P651S	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				20	0	0.00	13	4	23.53
PRTN3	0	genome.wustl.edu	37	19	846216	846216	+	Frame_Shift_Del	DEL	C	C	-			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	846216	846216	C	-	DEL	PRTN3	ENST00000234347	human	ensembl	74_37	+1	known	frame_shift_del	c.439	p.H148fs	0.001	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRTN3	HGNC	ENSG00000196415	tier1			25	0	0.00	25	13	34.21
PSAP	0	genome.wustl.edu	37	10	73587809	73587809	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	10	73587809	73587809	C	G	SNP	PSAP	ENST00000394934	human	ensembl	74_37	-1	known	missense	c.682	p.E228Q	1.000	pirsf_Saposin_chordata,pfam_SapB_1,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	pirsf_Saposin_chordata,pfam_SapB_1,pfam_SapB_2,pfam_SapA,superfamily_Saposin-like,smart_SapA,smart_SaposinB,prints_Saposin,pfscan_SapA,pfscan_SaposinB	-	no_errors	PSAP	HGNC	ENSG00000197746	tier1	-	-	38	0	0.00	43	11	20.37
PSMD8	0	genome.wustl.edu	37	19	38865577	38865577	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	38865577	38865577	C	G	SNP	PSMD8	ENST00000215071	human	ensembl	74_37	+1	known	missense	c.336	p.C112W	1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	PSMD8	HGNC	ENSG00000099341	tier1	-	-	33	0	0.00	83	14	14.43
PYGM	0	genome.wustl.edu	37	11	64519395	64519395	+	Splice_Site	DEL	C	C	-			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	64519395	64519395	C	0	DEL	PYGM	ENST00000164139	human	ensembl	74_37	-1	known	splice_site_del	c.1768+1	e14+1	1.000	-	-	-	no_errors	PYGM	HGNC	ENSG00000068976				119	0	0.00	88	8	8.33
R3HDM2	0	genome.wustl.edu	37	12	57704142	57704142	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	57704142	57704142	C	T	SNP	R3HDM2	ENST00000347140	human	ensembl	74_37	-1	known	missense	c.70	p.E24K	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912	tier1	-	-	58	0	0.00	62	19	23.46
RAB3GAP2	0	genome.wustl.edu	37	1	220387305	220387305	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	220387305	220387305	G	C	SNP	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	missense	c.197	p.T66S	0.005	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	tier1	-	-	86	0	0.00	61	74	54.81
RABGGTB	0	genome.wustl.edu	37	1	76255288	76255288	+	RNA	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	76255288	76255288	G	T	SNP	RABGGTB	ENST00000461653	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	RABGGTB	HGNC	ENSG00000137955	tier1	-	-	37	0	0.00	35	10	22.22
RASGRP4	0	genome.wustl.edu	37	19	38904097	38904097	+	Silent	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	38904097	38904097	G	A	SNP	RASGRP4	ENST00000587738	human	ensembl	74_37	-1	known	silent	c.1248	p.F416	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777	tier1	-	-	26	0	0.00	55	10	15.38
RBM19	0	genome.wustl.edu	37	12	114356247	114356247	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	114356247	114356247	G	T	SNP	RBM19	ENST00000261741	human	ensembl	74_37	-1	known	missense	c.2391	p.H797Q	0.189	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965				19	0	0.00	19	3	13.64
RBMY2FP	0	genome.wustl.edu	37	Y	24460678	24460678	+	RNA	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	Y	24460678	24460678	G	T	SNP	RBMY2FP	ENST00000303922	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RBMY2FP	HGNC	ENSG00000243040	tier1	-	-	102	0	0.00	67	54	44.63
RFTN1	0	genome.wustl.edu	37	3	16368365	16368365	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	16368365	16368365	C	A	SNP	RFTN1	ENST00000334133	human	ensembl	74_37	-1	known	missense	c.1165	p.D389Y	1.000	NULL	NULL	-	no_errors	RFTN1	HGNC	ENSG00000131378	tier1	-	-	45	0	0.00	39	14	26.42
ROBO3	0	genome.wustl.edu	37	11	124743663	124743663	+	Silent	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	124743663	124743663	G	C	SNP	ROBO3	ENST00000397801	human	ensembl	74_37	+1	known	silent	c.1689	p.V563	0.829	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO3	HGNC	ENSG00000154134	tier1	-	-	20	0	0.00	13	8	38.10
RRP7B	0	genome.wustl.edu	37	22	42970659	42970659	+	RNA	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	22	42970659	42970659	C	A	SNP	RRP7B	ENST00000458605	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RRP7B	HGNC	ENSG00000182841	tier1	-	-	19	0	0.00	10	13	56.52
RTL1	0	genome.wustl.edu	37	14	101347804	101347804	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	14	101347804	101347804	G	A	SNP	RTL1	ENST00000534062	human	ensembl	74_37	-1	known	missense	c.3322	p.R1108W	0.000	NULL	pfam_Retrotrans_gag_dom,superfamily_Peptidase_aspartic_dom	-	no_errors	RTL1	HGNC	ENSG00000254656	tier1	-	-	34	0	0.00	16	7	30.43
RTN1	0	genome.wustl.edu	37	14	60194345	60194345	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	14	60194345	60194345	C	T	SNP	RTN1	ENST00000267484	human	ensembl	74_37	-1	known	missense	c.1057	p.E353K	0.998	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN1	HGNC	ENSG00000139970	tier1	-	-	13	0	0.00	8	6	42.86
RYR2	0	genome.wustl.edu	37	1	237753263	237753263	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	237753263	237753263	C	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	nonsense	c.3763	p.Q1255*	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	tier1	-	-	39	0	0.00	82	10	10.87
SAG	0	genome.wustl.edu	37	2	234224723	234224723	+	Silent	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	234224723	234224723	G	T	SNP	SAG	ENST00000409110	human	ensembl	74_37	+1	known	silent	c.78	p.V26	1.000	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	SAG	HGNC	ENSG00000130561				40	0	0.00	46	3	6.12
SCCPDH	0	genome.wustl.edu	37	1	246887741	246887741	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	246887741	246887741	G	A	SNP	SCCPDH	ENST00000366510	human	ensembl	74_37	+1	known	missense	c.17	p.R6K	0.996	NULL	pfam_Saccharopine_DH/HSpermid_syn	-	no_errors	SCCPDH	HGNC	ENSG00000143653				16	0	0.00	32	5	13.51
SCYL2	0	genome.wustl.edu	37	12	100676832	100676832	+	Silent	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	100676832	100676832	C	A	SNP	SCYL2	ENST00000360820	human	ensembl	74_37	+1	known	silent	c.84	p.V28	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021	tier1	-	-	34	0	0.00	45	17	27.42
SDC2	0	genome.wustl.edu	37	8	97620584	97620584	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	8	97620584	97620584	G	C	SNP	SDC2	ENST00000302190	human	ensembl	74_37	+1	known	missense	c.328	p.E110Q	0.996	pfam_Syndecan/Neurexin_dom	pfam_Syndecan/Neurexin_dom,smart_Neurexin-like	-	no_errors	SDC2	HGNC	ENSG00000169439				37	0	0.00	42	3	6.67
SEC14L2	0	genome.wustl.edu	37	22	30812056	30812056	+	Silent	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	22	30812056	30812056	C	T	SNP	SEC14L2	ENST00000312932	human	ensembl	74_37	+1	known	silent	c.891	p.L297	1.000	superfamily_GOLD,pfscan_GOLD	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L2	HGNC	ENSG00000100003	tier1	-	-	34	0	0.00	12	32	72.73
SEPT1	0	genome.wustl.edu	37	16	30393911	30393911	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	16	30393911	30393911	T	C	SNP	SEPT1	ENST00000321367	human	ensembl	74_37	-1	known	missense	c.79	p.S27G	0.803	NULL	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT1	HGNC	ENSG00000180096	tier1	-	-	28	0	0.00	42	8	16.00
SGOL1	0	genome.wustl.edu	37	3	20216539	20216539	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	20216539	20216539	G	C	SNP	SGOL1	ENST00000263753	human	ensembl	74_37	-1	known	missense	c.484	p.P162A	0.000	NULL	pfam_Shugoshin_N,pfam_Shugoshin_C	-	no_errors	SGOL1	HGNC	ENSG00000129810				25	0	0.00	20	11	35.48
SI	0	genome.wustl.edu	37	3	164783167	164783167	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	164783167	164783167	G	A	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.689	p.S230L	1.000	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	tier1	-	-	27	0	0.00	68	14	17.07
SLC6A5	0	genome.wustl.edu	37	11	20623033	20623033	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	20623033	20623033	A	G	SNP	SLC6A5	ENST00000525748	human	ensembl	74_37	+1	known	missense	c.362	p.K121R	0.986	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970	tier1	-	-	27	0	0.00	20	9	31.03
SLFN12L	0	genome.wustl.edu	37	17	33805180	33805180	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	33805180	33805180	G	C	SNP	SLFN12L	ENST00000449046	human	ensembl	74_37	-1	known	missense	c.1211	p.A404G	0.000	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12L	HGNC	ENSG00000205045				49	0	0.00	47	3	6.00
SMEK1	0	genome.wustl.edu	37	14	91931710	91931710	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	14	91931710	91931710	G	T	SNP	SMEK1	ENST00000554943	human	ensembl	74_37	-1	known	missense	c.1714	p.R572S	1.000	superfamily_ARM-type_fold	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK1	HGNC	ENSG00000100796				19	0	0.00	33	2	5.71
SNAPC4	0	genome.wustl.edu	37	9	139286514	139286514	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	9	139286514	139286514	C	A	SNP	SNAPC4	ENST00000298532	human	ensembl	74_37	-1	known	missense	c.855	p.Q285H	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	SNAPC4	HGNC	ENSG00000165684	tier1	-	-	36	0	0.00	5	17	77.27
SPATA31D1	0	genome.wustl.edu	37	9	84608402	84608402	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	9	84608402	84608402	C	A	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	missense	c.3017	p.S1006Y	0.054	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929	tier1	-	-	64	0	0.00	54	18	25.00
SPATC1L	0	genome.wustl.edu	37	21	47588410	47588410	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	21	47588410	47588410	C	G	SNP	SPATC1L	ENST00000291672	human	ensembl	74_37	-1	known	missense	c.356	p.S119T	0.066	NULL	NULL	-	no_errors	SPATC1L	HGNC	ENSG00000160284	tier1	-	-	32	0	0.00	36	6	14.29
SPEF2	0	genome.wustl.edu	37	5	35618123	35618123	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	5	35618123	35618123	G	T	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	missense	c.24	p.W8C	1.000	pfam_DUF1042,superfamily_CH-domain,pfscan_CH-domain	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	tier1	-	-	31	0	0.00	56	4	6.67
SPIN1	0	genome.wustl.edu	37	9	91041391	91041391	+	RNA	SNP	A	A	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	9	91041391	91041391	A	T	SNP	SPIN1	ENST00000462844	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	SPIN1	HGNC	ENSG00000106723	tier1	-	-	13	0	0.00	5	18	78.26
SRCIN1	0	genome.wustl.edu	37	17	36708054	36708054	+	RNA	SNP	A	A	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	36708054	36708054	A	G	SNP	SRCIN1	ENST00000578160	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SRCIN1	HGNC	ENSG00000017373	tier1	-	-	25	0	0.00	20	6	23.08
SRP68	0	genome.wustl.edu	37	17	74035188	74035188	+	RNA	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	74035188	74035188	C	T	SNP	SRP68	ENST00000542536	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.872	-	-	-	no_errors	SRP68	HGNC	ENSG00000167881	tier1	-	-	45	0	0.00	28	12	30.00
STAU2-AS1	0	genome.wustl.edu	37	8	74332366	74332366	+	RNA	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	8	74332366	74332366	C	T	SNP	STAU2-AS1	ENST00000517604	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	STAU2-AS1	HGNC	ENSG00000253302	tier1	-	-	29	0	0.00	15	7	31.82
STT3B	0	genome.wustl.edu	37	3	31677578	31677578	+	RNA	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	31677578	31677578	C	T	SNP	STT3B	ENST00000463044	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	STT3B	HGNC	ENSG00000163527	tier1	-	-	56	0	0.00	16	4	20.00
STT3B	0	genome.wustl.edu	37	3	31677579	31677579	+	RNA	SNP	T	T	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	31677579	31677579	T	G	SNP	STT3B	ENST00000463044	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	STT3B	HGNC	ENSG00000163527	tier1	-	-	56	0	0.00	16	4	20.00
SUGP2	0	genome.wustl.edu	37	19	19120975	19120975	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	19120975	19120975	G	A	SNP	SUGP2	ENST00000337018	human	ensembl	74_37	-1	known	missense	c.2027	p.P676L	0.286	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP2	HGNC	ENSG00000064607				20	0	0.00	42	6	12.50
SUSD1	0	genome.wustl.edu	37	9	114820919	114820919	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	9	114820919	114820919	G	C	SNP	SUSD1	ENST00000374264	human	ensembl	74_37	-1	known	missense	c.1898	p.S633C	0.995	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD1	HGNC	ENSG00000106868	tier1	-	-	40	0	0.00	58	8	12.12
SV2B	0	genome.wustl.edu	37	15	91832773	91832773	+	Silent	SNP	A	A	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	15	91832773	91832773	A	C	SNP	SV2B	ENST00000330276	human	ensembl	74_37	+1	known	silent	c.1731	p.A577	0.028	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2B	HGNC	ENSG00000185518	tier1	-	-	46	0	0.00	59	17	22.37
SYNRG	0	genome.wustl.edu	37	17	35930849	35930849	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	35930849	35930849	A	T	SNP	SYNRG	ENST00000339208	human	ensembl	74_37	-1	known	missense	c.1234	p.S412T	1.000	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114	tier1	-	-	22	0	0.00	13	29	69.05
TANGO6	0	genome.wustl.edu	37	16	69008066	69008066	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	16	69008066	69008066	C	A	SNP	TANGO6	ENST00000261778	human	ensembl	74_37	+1	known	missense	c.2837	p.A946E	0.016	superfamily_ARM-type_fold	pfam_DUF2435,pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TANGO6	HGNC	ENSG00000103047	tier1	-	-	55	0	0.00	29	15	33.33
TAS1R3	0	genome.wustl.edu	37	1	1268382	1268382	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	1268382	1268382	G	C	SNP	TAS1R3	ENST00000339381	human	ensembl	74_37	+1	known	missense	c.1357	p.E453Q	0.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R3	HGNC	ENSG00000169962	tier1	-	-	45	0	0.00	31	10	24.39
TCAM1P	0	genome.wustl.edu	37	17	61939715	61939715	+	RNA	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	61939715	61939715	C	A	SNP	TCAM1P	ENST00000478379	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.037	-	-	-	no_errors	TCAM1P	HGNC	ENSG00000240280				35	0	0.00	35	4	10.26
TMEM129	0	genome.wustl.edu	37	4	1720170	1720171	+	Frame_Shift_Ins	INS	-	-	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	4	1720170	1720171	-	G	INS	TMEM129	ENST00000382936	human	ensembl	74_37	-1	known	frame_shift_ins	c.389_388	p.L130fs	0.009:0.016	pfam_Tmpp129	pfam_Tmpp129	-	no_errors	TMEM129	HGNC	ENSG00000168936	tier1			24	0	0.00	19	7	26.92
TMEM155	0	genome.wustl.edu	37	4	122681585	122681585	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	4	122681585	122681585	C	A	SNP	TMEM155	ENST00000337677	human	ensembl	74_37	-1	known	missense	c.257	p.S86I	0.002	NULL	NULL	-	no_errors	TMEM155	HGNC	ENSG00000164112	tier1	-	-	29	0	0.00	35	13	27.08
TMEM45A	0	genome.wustl.edu	37	3	100295770	100295770	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	100295770	100295770	T	G	SNP	TMEM45A	ENST00000323523	human	ensembl	74_37	+1	known	missense	c.736	p.L246V	1.000	NULL	pfam_DUF716_TMEM45	-	no_errors	TMEM45A	HGNC	ENSG00000181458	tier1	-	-	26	0	0.00	32	14	30.43
TMTC1	0	genome.wustl.edu	37	12	29936515	29936515	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	29936515	29936515	A	G	SNP	TMTC1	ENST00000539277	human	ensembl	74_37	-1	putative	missense	c.170	p.I57T	1.000	NULL	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687	tier1	-	-	39	0	0.00	38	10	20.83
TMTC1	0	genome.wustl.edu	37	12	29936562	29936562	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	29936562	29936562	G	T	SNP	TMTC1	ENST00000539277	human	ensembl	74_37	-1	putative	nonsense	c.123	p.Y41*	1.000	NULL	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687	tier1	-	-	17	0	0.00	17	5	21.74
TNFAIP6	0	genome.wustl.edu	37	2	152226759	152226759	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	152226759	152226759	G	T	SNP	TNFAIP6	ENST00000243347	human	ensembl	74_37	+1	known	missense	c.620	p.G207V	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Link,superfamily_CUB_dom,superfamily_C-type_lectin_fold,smart_Link,smart_CUB_dom,pfscan_CUB_dom,pfscan_Link,prints_Link	-	no_errors	TNFAIP6	HGNC	ENSG00000123610	tier1	-	-	31	0	0.00	28	9	24.32
TP53	0	genome.wustl.edu	37	17	7578547	7578547	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	7578547	7578547	G	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.383	p.P128fs	0.106	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			33	0	0.00	10	7	41.18
TRAK1	0	genome.wustl.edu	37	3	42251577	42251578	+	In_Frame_Ins	INS	-	-	GGA			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	42251577	42251578	-	GGA	INS	TRAK1	ENST00000341421	human	ensembl	74_37	+1	known	in_frame_ins	c.1889_1890	p.634in_frame_insE	0.010:0.044	NULL	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606	tier1			15	0	0.00	10	5	33.33
TRPM7	0	genome.wustl.edu	37	15	50903479	50903479	+	Silent	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	15	50903479	50903479	G	A	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	silent	c.2091	p.S697	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439	tier1	-	-	41	0	0.00	24	15	38.46
TTC28	0	genome.wustl.edu	37	22	28503690	28503690	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	22	28503690	28503690	G	A	SNP	TTC28	ENST00000397906	human	ensembl	74_37	-1	novel	nonsense	c.2143	p.R715*	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC28	HGNC	ENSG00000100154	tier1	-	-	51	0	0.00	19	11	36.67
TUBA3D	0	genome.wustl.edu	37	2	132237994	132237994	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	132237994	132237994	G	T	SNP	TUBA3D	ENST00000321253	human	ensembl	74_37	+1	known	missense	c.728	p.R243L	0.953	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3D	HGNC	ENSG00000075886	tier1	-	-	52	0	0.00	35	7	16.67
TUBA3E	0	genome.wustl.edu	37	2	130951687	130951687	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	130951687	130951687	C	A	SNP	TUBA3E	ENST00000312988	human	ensembl	74_37	-1	known	missense	c.728	p.R243L	0.996	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	-	no_errors	TUBA3E	HGNC	ENSG00000152086				147	0	0.00	124	9	6.72
UBE2N	0	genome.wustl.edu	37	12	93804730	93804730	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	93804730	93804730	C	A	SNP	UBE2N	ENST00000550657	human	ensembl	74_37	-1	novel	nonsense	c.376	p.E126*	0.000	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2N	HGNC	ENSG00000177889	tier1	-	-	19	0	0.00	18	9	33.33
UBE3C	0	genome.wustl.edu	37	7	157000528	157000528	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	7	157000528	157000528	G	C	SNP	UBE3C	ENST00000348165	human	ensembl	74_37	+1	known	missense	c.1708	p.E570Q	0.999	NULL	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335	tier1	-	-	32	0	0.00	15	14	48.28
USP34	0	genome.wustl.edu	37	2	61468742	61468742	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	2	61468742	61468742	C	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	nonsense	c.6730	p.E2244*	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464	tier1	-	-	34	0	0.00	52	8	13.33
USP47	0	genome.wustl.edu	37	11	11958055	11958055	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	11	11958055	11958055	G	A	SNP	USP47	ENST00000399455	human	ensembl	74_37	+1	known	missense	c.2135	p.G712E	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP47	HGNC	ENSG00000170242				15	0	0.00	28	5	15.15
VDR	0	genome.wustl.edu	37	12	48238609	48238609	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	48238609	48238609	G	C	SNP	VDR	ENST00000229022	human	ensembl	74_37	-1	known	missense	c.1204	p.R402G	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_VitD_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	VDR	HGNC	ENSG00000111424	tier1	-	-	74	0	0.00	78	16	17.02
VKORC1	0	genome.wustl.edu	37	16	31106745	31106745	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	16	31106745	31106745	C	T	SNP	VKORC1	ENST00000498155	human	ensembl	74_37	-1	putative	missense	c.235	p.G79R	0.009	NULL	NULL	-	no_errors	VKORC1	HGNC	ENSG00000167397	tier1	-	-	38	0	0.00	22	11	33.33
VPS9D1-AS1	0	genome.wustl.edu	37	16	89784476	89784476	+	RNA	SNP	C	C	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	16	89784476	89784476	C	T	SNP	VPS9D1-AS1	ENST00000562298	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.418	-	-	-	no_errors	VPS9D1-AS1	HGNC	ENSG00000261373	tier1	-	-	112	0	0.00	127	31	19.62
WDFY3	0	genome.wustl.edu	37	4	85711028	85711028	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	4	85711028	85711028	C	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	nonsense	c.3520	p.E1174*	1.000	superfamily_ConA-like_lec_gl_sf	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	tier1	-	-	22	0	0.00	16	4	20.00
WDR13	0	genome.wustl.edu	37	X	48458003	48458003	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	X	48458003	48458003	G	T	SNP	WDR13	ENST00000218056	human	ensembl	74_37	+1	known	missense	c.421	p.A141S	0.892	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940				16	0	0.00	73	4	5.19
WDR87	0	genome.wustl.edu	37	19	38386867	38386867	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	38386867	38386867	G	A	SNP	WDR87	ENST00000447313	human	ensembl	74_37	-1	known	nonsense	c.157	p.Q53*	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Quinolinate_PRibosylTrfase_C,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR87	HGNC	ENSG00000171804	tier1	-	-	48	0	0.00	54	79	59.40
WRN	0	genome.wustl.edu	37	8	31012243	31012243	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	8	31012243	31012243	C	G	SNP	WRN	ENST00000298139	human	ensembl	74_37	+1	known	missense	c.3791	p.S1264C	0.981	NULL	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392	tier1	-	-	63	0	0.00	36	23	38.98
WSCD1	0	genome.wustl.edu	37	17	6021393	6021393	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	17	6021393	6021393	G	A	SNP	WSCD1	ENST00000317744	human	ensembl	74_37	+1	known	missense	c.1260	p.M420I	1.000	superfamily_P-loop_NTPase	pfam_WSC_carb-bd,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD1	HGNC	ENSG00000179314	tier1	-	-	22	0	0.00	12	13	52.00
XRN1	0	genome.wustl.edu	37	3	142131431	142131431	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	142131431	142131431	T	A	SNP	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	missense	c.1668	p.K556N	1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127	tier1	-	-	59	0	0.00	127	23	15.33
ZFC3H1	0	genome.wustl.edu	37	12	72028607	72028608	+	Splice_Site	INS	-	-	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	72028607	72028608	-	A	INS	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	splice_site_ins	c.2239-3_2239-2	e11-2	0.902:0.745	-	-	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	tier1			18	0	0.00	30	3	9.09
ZKSCAN3	0	genome.wustl.edu	37	6	28327648	28327648	+	Silent	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	6	28327648	28327648	G	T	SNP	ZKSCAN3	ENST00000252211	human	ensembl	74_37	+1	known	silent	c.285	p.L95	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN3	HGNC	ENSG00000189298	tier1	-	-	31	0	0.00	34	26	43.33
ZMYM1	0	genome.wustl.edu	37	1	35580160	35580160	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	35580160	35580160	A	C	SNP	ZMYM1	ENST00000359858	human	ensembl	74_37	+1	novel	missense	c.2729	p.K910T	0.573	superfamily_RNaseH-like_dom	pfam_Znf_MYM,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_TRASH_dom	-	no_errors	ZMYM1	HGNC	ENSG00000197056	tier1	-	-	28	0	0.00	41	11	21.15
ZNF268	0	genome.wustl.edu	37	12	133778860	133778860	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	12	133778860	133778860	A	T	SNP	ZNF268	ENST00000541211	human	ensembl	74_37	+1	known	missense	c.461	p.Q154L	0.002	NULL	NULL	-	no_errors	ZNF268	HGNC	ENSG00000090612	tier1	-	-	38	0	0.00	17	8	32.00
ZNF385D	0	genome.wustl.edu	37	3	22210428	22210428	+	RNA	SNP	A	A	G			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	3	22210428	22210428	A	G	SNP	ZNF385D	ENST00000466511	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF385D	HGNC	ENSG00000151789	tier1	-	-	67	0	0.00	55	18	24.66
ZNF469	0	genome.wustl.edu	37	16	88499969	88499969	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	16	88499969	88499969	G	A	SNP	ZNF469	ENST00000437464	human	ensembl	74_37	+1	known	missense	c.6007	p.E2003K	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF469	HGNC	ENSG00000225614	tier1	-	-	35	0	0.00	25	13	34.21
ZNF570	0	genome.wustl.edu	37	19	37960340	37960340	+	RNA	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	37960340	37960340	G	T	SNP	ZNF570	ENST00000591380	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF570	HGNC	ENSG00000171827	tier1	-	-	29	0	0.00	32	4	11.11
ZNF570	0	genome.wustl.edu	37	19	37975938	37975938	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	37975938	37975938	T	C	SNP	ZNF570	ENST00000330173	human	ensembl	74_37	+1	known	missense	c.1414	p.C472R	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF570	HGNC	ENSG00000171827	tier1	-	-	45	0	0.00	76	13	14.61
ZNF653	0	genome.wustl.edu	37	19	11598149	11598149	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	11598149	11598149	T	C	SNP	ZNF653	ENST00000293771	human	ensembl	74_37	-1	known	missense	c.1129	p.T377A	0.410	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF653	HGNC	ENSG00000161914	tier1	-	-	43	0	0.00	90	10	10.00
ZNF720	0	genome.wustl.edu	37	16	31724640	31724640	+	RNA	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	16	31724640	31724640	G	A	SNP	ZNF720	ENST00000531864	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF720	HGNC	ENSG00000197302	tier1	-	-	20	0	0.00	23	8	25.81
ZNF727	0	genome.wustl.edu	37	7	63537932	63537932	+	Silent	SNP	A	A	C			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	7	63537932	63537932	A	C	SNP	ZNF727	ENST00000550760	human	ensembl	74_37	+1	known	silent	c.505	p.R169	0.019	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF727	HGNC	ENSG00000257482	tier1	-	-	21	0	0.00	37	9	19.57
ZNF736	0	genome.wustl.edu	37	7	63797361	63797361	+	Splice_Site	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	7	63797361	63797361	G	T	SNP	ZNF736	ENST00000355095	human	ensembl	74_37	+1	known	splice_site	c.226+1	e3+1	0.045	-	-	-	no_errors	ZNF736	HGNC	ENSG00000234444	tier1	-	-	29	0	0.00	62	8	11.27
ZNF749	0	genome.wustl.edu	37	19	57955810	57955810	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	57955810	57955810	C	A	SNP	ZNF749	ENST00000334181	human	ensembl	74_37	+1	known	missense	c.1294	p.H432N	0.995	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF749	HGNC	ENSG00000186230	tier1	-	-	40	0	0.00	17	30	63.83
ZNF880	0	genome.wustl.edu	37	19	52887707	52887707	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	19	52887707	52887707	G	T	SNP	ZNF880	ENST00000422689	human	ensembl	74_37	+1	known	nonsense	c.874	p.G292*	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF880	HGNC	ENSG00000221923	tier1	-	-	45	0	0.00	29	17	36.96
ZNRD1-AS1	0	genome.wustl.edu	37	6	29976907	29976907	+	RNA	SNP	G	G	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	6	29976907	29976907	G	A	SNP	ZNRD1-AS1	ENST00000376797	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	ZNRD1-AS1	HGNC	ENSG00000204623	tier1	-	-	68	0	0.00	48	44	47.83
ZSWIM1	0	genome.wustl.edu	37	20	44511684	44511684	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	20	44511684	44511684	C	A	SNP	ZSWIM1	ENST00000372520	human	ensembl	74_37	+1	known	missense	c.453	p.F151L	0.229	NULL	pfam_Znf_SWIM,pfscan_Znf_SWIM	-	no_errors	ZSWIM1	HGNC	ENSG00000168612	tier1	-	-	29	0	0.00	29	12	29.27
ZZZ3	0	genome.wustl.edu	37	1	78030640	78030640	+	RNA	SNP	C	C	A			TCGA-LN-A49L-01A-11D-A247-09	TCGA-LN-A49L-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8c1f9eac-d7fb-4794-86f4-1d9c383868b2	eff182c7-0675-4fad-85ef-f59a124a8880	1	78030640	78030640	C	A	SNP	ZZZ3	ENST00000476275	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZZZ3	HGNC	ENSG00000036549	tier1	-	-	31	0	0.00	26	9	25.71
