Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
A1BG	0	genome.wustl.edu	37	19	58863717	58863717	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	58863717	58863717	C	A	SNP	A1BG	ENST00000263100	human	ensembl	74_37	-1	known	missense	c.545	p.C182F	1.000	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	A1BG	HGNC	ENSG00000121410				33	0	0.00	24	2	7.69
ABCD2	0	genome.wustl.edu	37	12	39967550	39967550	+	Silent	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	12	39967550	39967550	G	T	SNP	ABCD2	ENST00000308666	human	ensembl	74_37	-1	known	silent	c.1971	p.S657	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCD2	HGNC	ENSG00000173208	tier1	-	-	40	0	0.00	52	4	7.14
ABI3BP	0	genome.wustl.edu	37	3	100554487	100554487	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	100554487	100554487	C	G	SNP	ABI3BP	ENST00000383691	human	ensembl	74_37	-1	known	missense	c.85	p.E29Q	0.982	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175	tier1	-	-	21	0	0.00	21	4	16.00
ADCK2	0	genome.wustl.edu	37	7	140378976	140378976	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	140378976	140378976	C	T	SNP	ADCK2	ENST00000072869	human	ensembl	74_37	+1	known	nonsense	c.1102	p.Q368*	0.998	pfam_UbiB_dom,superfamily_Kinase-like_dom	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK2	HGNC	ENSG00000133597	tier1	-	-	95	0	0.00	68	32	32.00
ADGB	0	genome.wustl.edu	37	6	146956593	146956593	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	146956593	146956593	G	A	SNP	ADGB	ENST00000397944	human	ensembl	74_37	+1	known	missense	c.157	p.E53K	1.000	NULL	pfam_Peptidase_C2_calpain_cat,superfamily_Globin-like,smart_Peptidase_C2_calpain_cat,pfscan_IQ_motif_EF-hand-BS,pfscan_Peptidase_C2_calpain_cat	-	no_errors	ADGB	HGNC	ENSG00000118492	tier1	-	-	68	0	0.00	38	18	32.14
AHNAK	0	genome.wustl.edu	37	11	62289859	62289859	+	Silent	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	62289859	62289859	C	G	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	silent	c.12030	p.L4010	0.030	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	tier1	-	-	103	0	0.00	88	38	30.16
AHNAK	0	genome.wustl.edu	37	11	62290087	62290087	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	62290087	62290087	C	A	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.11802	p.K3934N	0.023	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	tier1	-	-	112	0	0.00	98	60	37.97
AHNAK	0	genome.wustl.edu	37	11	62299163	62299163	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	62299163	62299163	G	T	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	nonsense	c.2726	p.S909*	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	tier1	-	-	143	0	0.00	113	42	27.10
AMOT	0	genome.wustl.edu	37	X	112024179	112024179	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	112024179	112024179	G	A	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	missense	c.2408	p.S803F	0.995	pfam_Angiomotin_C	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016	tier1	-	-	20	0	0.00	22	13	37.14
APBA2	0	genome.wustl.edu	37	15	29400541	29400541	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	29400541	29400541	C	T	SNP	APBA2	ENST00000558259	human	ensembl	74_37	+1	known	silent	c.1986	p.I662	1.000	superfamily_PDZ,pfscan_PDZ	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	tier1	-	-	40	0	0.00	43	19	30.65
ARFGEF2	0	genome.wustl.edu	37	20	47589702	47589702	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	20	47589702	47589702	A	G	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.1546	p.I516V	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	tier1	-	-	58	0	0.00	42	26	38.24
ARID1A	0	genome.wustl.edu	37	1	27087879	27087879	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	27087879	27087879	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	silent	c.2166	p.N722	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	tier1	-	-	32	0	0.00	28	12	30.00
ATF7IP	0	genome.wustl.edu	37	12	14589100	14589100	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	12	14589100	14589100	G	T	SNP	ATF7IP	ENST00000261168	human	ensembl	74_37	+1	known	missense	c.1706	p.R569L	0.996	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681				21	0	0.00	15	2	11.76
ATG2B	0	genome.wustl.edu	37	14	96829287	96829287	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	14	96829287	96829287	G	C	SNP	ATG2B	ENST00000359933	human	ensembl	74_37	-1	known	missense	c.27	p.I9M	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	tier1	-	-	57	0	0.00	58	24	29.27
AVPR2	0	genome.wustl.edu	37	X	153171021	153171021	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	153171021	153171021	A	G	SNP	AVPR2	ENST00000337474	human	ensembl	74_37	+1	known	missense	c.61	p.S21G	0.065	prints_Vprsn_rcpt_V2	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Vprsn_rcpt_V2,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR2	HGNC	ENSG00000126895	tier1	-	-	27	0	0.00	74	5	6.33
AWAT2	0	genome.wustl.edu	37	X	69263824	69263824	+	Silent	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	69263824	69263824	C	G	SNP	AWAT2	ENST00000276101	human	ensembl	74_37	-1	known	silent	c.219	p.V73	0.464	pfam_DAGAT	pfam_DAGAT	-	no_errors	AWAT2	HGNC	ENSG00000147160	tier1	-	-	32	0	0.00	15	28	65.12
BCL2L11	0	genome.wustl.edu	37	2	111907693	111907693	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	2	111907693	111907693	G	A	SNP	BCL2L11	ENST00000393256	human	ensembl	74_37	+1	known	missense	c.467	p.G156E	1.000	pfam_Bcl-x_interacting_BH3_dom,pirsf_Bcl-2-like_11	pfam_Bcl-x_interacting_BH3_dom,pfam_Apoptosis_Bim_N,pirsf_Bcl-2-like_11	-	no_errors	BCL2L11	HGNC	ENSG00000153094	tier1	-	-	53	0	0.00	33	16	32.65
BMP2K	0	genome.wustl.edu	37	4	79832424	79832424	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	4	79832424	79832424	A	G	SNP	BMP2K	ENST00000335016	human	ensembl	74_37	+1	known	missense	c.2723	p.N908S	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMP2K	HGNC	ENSG00000138756	tier1	-	-	57	0	0.00	24	24	50.00
BNC2	0	genome.wustl.edu	37	9	16437354	16437354	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	9	16437354	16437354	A	G	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	missense	c.838	p.S280P	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068	tier1	-	-	64	0	0.00	18	19	51.35
BZRAP1	0	genome.wustl.edu	37	17	56400114	56400114	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	56400114	56400114	C	T	SNP	BZRAP1	ENST00000355701	human	ensembl	74_37	-1	known	silent	c.1218	p.L406	1.000	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379	tier1	-	-	30	0	0.00	19	10	34.48
C17orf66	0	genome.wustl.edu	37	17	34185297	34185297	+	Silent	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	34185297	34185297	G	C	SNP	C17orf66	ENST00000311880	human	ensembl	74_37	-1	known	silent	c.1059	p.L353	0.995	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C17orf66	HGNC	ENSG00000172653	tier1	-	-	37	0	0.00	49	26	34.67
C3orf27	0	genome.wustl.edu	37	3	128292319	128292320	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	128292319	128292320	TC	-	DEL	C3orf27	ENST00000356020	human	ensembl	74_37	-1	known	frame_shift_del	c.254_253	p.D85fs	0.075:0.076	NULL	NULL	-	no_errors	C3orf27	HGNC	ENSG00000198685	tier1			19	0	0.00	18	4	18.18
C5orf58	0	genome.wustl.edu	37	5	169661118	169661119	+	Splice_Site	INS	-	-	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	5	169661118	169661119	-	T	INS	C5orf58	ENST00000593851	human	ensembl	74_37	+1	known	splice_site_ins	c.1-1_0	e1-1	0.000:0.003	-	-	-	no_errors	C5orf58	HGNC	ENSG00000234511	tier1			37	0	0.00	12	10	45.45
CACNB3	0	genome.wustl.edu	37	12	49217550	49217550	+	Silent	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	12	49217550	49217550	C	G	SNP	CACNB3	ENST00000301050	human	ensembl	74_37	+1	known	silent	c.255	p.V85	1.000	superfamily_SH3_domain	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,prints_VDCC_L_bsu,prints_VDCC_L_b3su	-	no_errors	CACNB3	HGNC	ENSG00000167535	tier1	-	-	63	0	0.00	31	15	32.61
CASD1	0	genome.wustl.edu	37	7	94184821	94184821	+	Nonsense_Mutation	SNP	T	T	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	94184821	94184821	T	A	SNP	CASD1	ENST00000297273	human	ensembl	74_37	+1	known	nonsense	c.2145	p.Y715*	0.995	NULL	pfam_Cas1_AcylTrans_dom,superfamily_Cyclin-like	-	no_errors	CASD1	HGNC	ENSG00000127995	tier1	-	-	38	0	0.00	44	25	36.23
CASP14	0	genome.wustl.edu	37	19	15164702	15164702	+	Silent	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	15164702	15164702	G	T	SNP	CASP14	ENST00000221740	human	ensembl	74_37	+1	known	silent	c.336	p.L112	0.291	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_ICE_p20	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP14	HGNC	ENSG00000105141				18	0	0.00	30	3	9.09
CAST	0	genome.wustl.edu	37	5	96108510	96108510	+	RNA	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	5	96108510	96108510	G	C	SNP	CAST	ENST00000348386	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.942	-	-	-	no_errors	CAST	HGNC	ENSG00000153113	tier1	-	-	54	0	0.00	12	12	50.00
CCDC14	0	genome.wustl.edu	37	3	123650025	123650025	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	123650025	123650025	C	T	SNP	CCDC14	ENST00000488653	human	ensembl	74_37	-1	known	missense	c.1846	p.E616K	0.986	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455	tier1	-	-	53	0	0.00	25	14	35.90
CCDC168	0	genome.wustl.edu	37	13	103388934	103388934	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	13	103388934	103388934	C	G	SNP	CCDC168	ENST00000322527	human	ensembl	74_37	-1	known	missense	c.226	p.E76Q	0.001	NULL	NULL	-	no_errors	CCDC168	HGNC	ENSG00000175820	tier1	-	-	58	0	0.00	45	16	26.23
CCT2	0	genome.wustl.edu	37	12	69980553	69980553	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	12	69980553	69980553	C	T	SNP	CCT2	ENST00000299300	human	ensembl	74_37	+1	known	silent	c.99	p.I33	0.974	superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_beta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_beta	-	no_errors	CCT2	HGNC	ENSG00000166226	tier1	-	-	72	0	0.00	30	15	33.33
CCT8L2	0	genome.wustl.edu	37	22	17072518	17072518	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	22	17072518	17072518	T	C	SNP	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	missense	c.923	p.D308G	0.005	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445	tier1	-	-	60	0	0.00	57	18	24.00
CDCA7	0	genome.wustl.edu	37	2	174231980	174231980	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	2	174231980	174231980	C	T	SNP	CDCA7	ENST00000306721	human	ensembl	74_37	+1	known	missense	c.1288	p.H430Y	1.000	pfam_Znf-4CXXC_R1	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7	HGNC	ENSG00000144354	tier1	-	-	67	0	0.00	27	25	48.08
CDH12	0	genome.wustl.edu	37	5	21842384	21842384	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	5	21842384	21842384	G	A	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	nonsense	c.700	p.Q234*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162	tier1	-	-	70	0	0.00	46	29	38.67
CDK13	0	genome.wustl.edu	37	7	39991112	39991112	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	39991112	39991112	C	T	SNP	CDK13	ENST00000181839	human	ensembl	74_37	+1	known	missense	c.872	p.S291L	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK13	HGNC	ENSG00000065883	tier1	-	-	9	0	0.00	4	5	55.56
CDYL	0	genome.wustl.edu	37	6	4943930	4943930	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	4943930	4943930	C	T	SNP	CDYL	ENST00000328908	human	ensembl	74_37	+1	known	silent	c.1434	p.F478	1.000	pfam_Crotonase_core_superfam	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046	tier1	-	-	58	0	0.00	45	29	39.19
CEP152	0	genome.wustl.edu	37	15	49031177	49031177	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	49031177	49031177	C	T	SNP	CEP152	ENST00000380950	human	ensembl	74_37	-1	known	missense	c.4402	p.E1468K	0.304	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	tier1	-	-	30	0	0.00	26	13	33.33
CEP250	0	genome.wustl.edu	37	20	34090592	34090592	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	20	34090592	34090592	G	A	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	silent	c.4395	p.L1465	0.984	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	tier1	-	-	25	0	0.00	19	9	32.14
CEP250	0	genome.wustl.edu	37	20	34092542	34092542	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	20	34092542	34092542	G	C	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	missense	c.6345	p.E2115D	0.942	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	tier1	-	-	16	0	0.00	19	4	17.39
CEP85L	0	genome.wustl.edu	37	6	118886706	118886706	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	118886706	118886706	C	G	SNP	CEP85L	ENST00000368488	human	ensembl	74_37	-1	known	missense	c.1015	p.E339Q	1.000	NULL	NULL	-	no_errors	CEP85L	HGNC	ENSG00000111860	tier1	-	-	19	0	0.00	14	4	22.22
CGREF1	0	genome.wustl.edu	37	2	27325006	27325006	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	2	27325006	27325006	C	T	SNP	CGREF1	ENST00000312734	human	ensembl	74_37	-1	known	missense	c.301	p.A101T	0.722	pfscan_EF_hand_dom	pfscan_EF_hand_dom	-	no_errors	CGREF1	HGNC	ENSG00000138028	tier1	-	-	29	0	0.00	40	4	9.09
CHD8	0	genome.wustl.edu	37	14	21861740	21861740	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	14	21861740	21861740	C	G	SNP	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	missense	c.6214	p.E2072Q	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	tier1	-	-	25	0	0.00	15	12	44.44
CHL1	0	genome.wustl.edu	37	3	239555	239556	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	239555	239556	-	T	INS	CHL1	ENST00000453040	human	ensembl	74_37	+1	known	frame_shift_ins	c.226_227	p.F80fs	0.000:0.000	NULL	NULL	-	no_errors	CHL1	HGNC	ENSG00000134121	tier1			51	0	0.00	58	6	9.38
CHM	0	genome.wustl.edu	37	X	85118100	85118101	+	Splice_Site	INS	-	-	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	85118100	85118101	-	T	INS	CHM	ENST00000467744	human	ensembl	74_37	-1	known	splice_site_ins	c.NULL	NULL	0.002:0.003	-	-	-	no_errors	CHM	HGNC	ENSG00000188419	tier1			13	0	0.00	19	3	13.64
CHM	0	genome.wustl.edu	37	X	85118101	85118101	+	Splice_Site	DEL	T	T	-			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	85118101	85118101	T	-	DEL	CHM	ENST00000467744	human	ensembl	74_37	-1	known	splice_site_del	c.NULL	NULL	0.003	-	-	-	no_errors	CHM	HGNC	ENSG00000188419	tier1			14	0	0.00	18	4	18.18
CHRD	0	genome.wustl.edu	37	3	184101106	184101107	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	184101106	184101107	AA	-	DEL	CHRD	ENST00000204604	human	ensembl	74_37	+1	known	frame_shift_del	c.1220_1221	p.S408fs	1.000:0.999	pfam_CHRD,smart_CHRD,pirsf_Chordin,pfscan_CHRD	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539	tier1			29	0	0.00	23	34	59.65
CLHC1	0	genome.wustl.edu	37	2	55439812	55439812	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	2	55439812	55439812	G	C	SNP	CLHC1	ENST00000401408	human	ensembl	74_37	-1	known	missense	c.496	p.P166A	1.000	pirsf_Clathrin_heavy-chain-rel	superfamily_ARM-type_fold,pirsf_Clathrin_heavy-chain-rel	-	no_errors	CLHC1	HGNC	ENSG00000162994	tier1	-	-	38	0	0.00	21	12	36.36
CNOT6L	0	genome.wustl.edu	37	4	78647324	78647324	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	4	78647324	78647324	G	T	SNP	CNOT6L	ENST00000264903	human	ensembl	74_37	-1	known	missense	c.1452	p.F484L	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,pfam_Leu-rich_rpt,superfamily_Endo/exonuclease/phosphatase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNOT6L	HGNC	ENSG00000138767	tier1	-	-	52	0	0.00	17	18	51.43
CNTN5	0	genome.wustl.edu	37	11	99942510	99942510	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	99942510	99942510	G	T	SNP	CNTN5	ENST00000279463	human	ensembl	74_37	+1	known	missense	c.1373	p.C458F	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN5	HGNC	ENSG00000149972	tier1	-	-	19	0	0.00	8	4	33.33
COL22A1	0	genome.wustl.edu	37	8	139603732	139603732	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	139603732	139603732	G	C	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	missense	c.4628	p.A1543G	1.000	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	tier1	-	-	40	0	0.00	45	8	15.09
COL22A1	0	genome.wustl.edu	37	8	139737649	139737649	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	139737649	139737649	G	-	DEL	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	frame_shift_del	c.2174	p.P725fs	1.000	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436	tier1			24	0	0.00	22	2	8.33
CPAMD8	0	genome.wustl.edu	37	19	17038839	17038839	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	17038839	17038839	C	T	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.3491	p.R1164Q	1.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111	tier1	-	-	38	0	0.00	35	13	27.08
CPSF1	0	genome.wustl.edu	37	8	145622125	145622125	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	145622125	145622125	A	G	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	missense	c.2612	p.L871P	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894	tier1	-	-	87	0	0.00	113	36	24.16
CRCP	0	genome.wustl.edu	37	7	65617254	65617254	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	65617254	65617254	C	T	SNP	CRCP	ENST00000395326	human	ensembl	74_37	+1	known	silent	c.357	p.T119	0.001	pfam_RNA_pol_II_Rpb4,superfamily_HRDC-like,smart_RNA_pol_II_Rpb4_core	pfam_RNA_pol_II_Rpb4,superfamily_HRDC-like,smart_RNA_pol_II_Rpb4_core	-	no_errors	CRCP	HGNC	ENSG00000241258	tier1	-	-	21	0	0.00	15	7	31.82
CREB3L2	0	genome.wustl.edu	37	7	137686398	137686398	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	137686398	137686398	C	T	SNP	CREB3L2	ENST00000330387	human	ensembl	74_37	-1	known	silent	c.54	p.L18	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L2	HGNC	ENSG00000182158	tier1	-	-	66	0	0.00	50	17	25.37
CSMD1	0	genome.wustl.edu	37	8	3015448	3015448	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	3015448	3015448	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.5888	p.R1963H	0.999	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				31	0	0.00	14	2	12.50
CTNNA1	0	genome.wustl.edu	37	5	138266577	138266577	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	5	138266577	138266577	G	A	SNP	CTNNA1	ENST00000302763	human	ensembl	74_37	+1	known	missense	c.2251	p.E751K	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115	tier1	-	-	31	0	0.00	35	6	14.63
CWC27	0	genome.wustl.edu	37	5	64081312	64081312	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	5	64081312	64081312	C	T	SNP	CWC27	ENST00000381070	human	ensembl	74_37	+1	known	missense	c.401	p.T134I	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	CWC27	HGNC	ENSG00000153015	tier1	-	-	60	0	0.00	26	19	42.22
CYLC2	0	genome.wustl.edu	37	9	105767708	105767708	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	9	105767708	105767708	G	T	SNP	CYLC2	ENST00000374798	human	ensembl	74_37	+1	known	missense	c.795	p.K265N	0.020	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833				14	0	0.00	14	2	12.50
CYP1A1	0	genome.wustl.edu	37	15	75014785	75014785	+	Silent	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	75014785	75014785	G	C	SNP	CYP1A1	ENST00000379727	human	ensembl	74_37	-1	known	silent	c.654	p.V218	0.033	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1A1	HGNC	ENSG00000140465	tier1	-	-	70	0	0.00	58	20	25.64
CYP2W1	0	genome.wustl.edu	37	7	1024706	1024706	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	1024706	1024706	G	T	SNP	CYP2W1	ENST00000308919	human	ensembl	74_37	+1	known	missense	c.458	p.C153F	0.053	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2W1	HGNC	ENSG00000073067	tier1	-	-	82	0	0.00	77	30	28.04
DAGLA	0	genome.wustl.edu	37	11	61491028	61491028	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	61491028	61491028	C	T	SNP	DAGLA	ENST00000257215	human	ensembl	74_37	+1	known	missense	c.532	p.R178W	1.000	NULL	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780	tier1	-	-	25	0	0.00	29	10	25.64
DAPK1	0	genome.wustl.edu	37	9	90252871	90252871	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	9	90252871	90252871	G	A	SNP	DAPK1	ENST00000469640	human	ensembl	74_37	+1	known	missense	c.298	p.E100K	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730	tier1	-	-	46	0	0.00	13	21	61.76
DCAF4L2	0	genome.wustl.edu	37	8	88886083	88886083	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	88886083	88886083	G	A	SNP	DCAF4L2	ENST00000319675	human	ensembl	74_37	-1	known	silent	c.117	p.F39	0.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	tier1	-	-	107	0	0.00	75	40	34.78
DCC	0	genome.wustl.edu	37	18	50731660	50731660	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	18	50731660	50731660	C	T	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.1648	p.P550S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323	tier1	-	-	40	0	0.00	16	15	48.39
DDR1	0	genome.wustl.edu	37	6	30864803	30864803	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	30864803	30864803	G	A	SNP	DDR1	ENST00000376575	human	ensembl	74_37	+1	known	missense	c.1882	p.E628K	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR1	HGNC	ENSG00000204580	tier1	-	-	63	0	0.00	37	23	38.33
DDX21	0	genome.wustl.edu	37	10	70716052	70716052	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	10	70716052	70716052	G	C	SNP	DDX21	ENST00000354185	human	ensembl	74_37	+1	known	missense	c.71	p.R24P	0.001	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX21	HGNC	ENSG00000165732	tier1	-	-	18	0	0.00	10	5	33.33
DDX28	0	genome.wustl.edu	37	16	68055590	68055590	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	68055590	68055590	G	C	SNP	DDX28	ENST00000332395	human	ensembl	74_37	-1	known	missense	c.1516	p.P506A	0.997	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX28	HGNC	ENSG00000182810	tier1	-	-	22	0	0.00	30	7	18.92
DENND2A	0	genome.wustl.edu	37	7	140269453	140269453	+	Nonsense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	140269453	140269453	G	C	SNP	DENND2A	ENST00000275884	human	ensembl	74_37	-1	known	nonsense	c.1532	p.S511*	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966	tier1	-	-	57	0	0.00	46	21	31.34
DLG1	0	genome.wustl.edu	37	3	196812438	196812438	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	196812438	196812438	G	C	SNP	DLG1	ENST00000392381	human	ensembl	74_37	-1	known	missense	c.1950	p.F650L	0.001	smart_SH3_domain	pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_PDZ,superfamily_SH3_domain,smart_L27,smart_PDZ,smart_SH3_domain,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain	-	no_errors	DLG1	HGNC	ENSG00000075711	tier1	-	-	30	0	0.00	32	25	43.86
DLGAP3	0	genome.wustl.edu	37	1	35370161	35370161	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	35370161	35370161	G	A	SNP	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	missense	c.824	p.A275V	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544	tier1	-	-	35	0	0.00	25	11	30.56
DLGAP5	0	genome.wustl.edu	37	14	55642728	55642728	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	14	55642728	55642728	G	A	SNP	DLGAP5	ENST00000247191	human	ensembl	74_37	-1	known	missense	c.1058	p.S353F	0.774	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP5	HGNC	ENSG00000126787	tier1	-	-	57	0	0.00	36	13	26.53
DNAH5	0	genome.wustl.edu	37	5	13883156	13883156	+	Silent	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	5	13883156	13883156	G	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	silent	c.3031	p.R1011	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				22	0	0.00	38	2	5.00
DNHD1	0	genome.wustl.edu	37	11	6519527	6519527	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	6519527	6519527	G	T	SNP	DNHD1	ENST00000254579	human	ensembl	74_37	+1	known	missense	c.82	p.V28F	0.000	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,superfamily_P-loop_NTPase,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	tier1	-	-	30	0	0.00	13	3	18.75
DPCR1	0	genome.wustl.edu	37	6	30917575	30917575	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	30917575	30917575	G	C	SNP	DPCR1	ENST00000462446	human	ensembl	74_37	+1	novel	missense	c.1334	p.R445T	0.000	NULL	NULL	-	no_errors	DPCR1	HGNC	ENSG00000168631	tier1	-	-	65	0	0.00	46	28	37.84
DPM2	0	genome.wustl.edu	37	9	130698040	130698040	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	9	130698040	130698040	C	T	SNP	DPM2	ENST00000314392	human	ensembl	74_37	-1	known	silent	c.216	p.V72	0.985	pfam_DPM2	pfam_DPM2	-	no_errors	DPM2	HGNC	ENSG00000136908	tier1	-	-	48	0	0.00	32	10	23.81
DPYD	0	genome.wustl.edu	37	1	97771847	97771847	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	97771847	97771847	C	T	SNP	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	missense	c.2065	p.E689K	1.000	pfam_Dihydroorotate_DH_1_2,pfam_tRNA_hU_synthase,tigrfam_Dihydroorotate_DH	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641	tier1	-	-	17	0	0.00	20	6	23.08
DSCR3	0	genome.wustl.edu	37	21	38610793	38610793	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	21	38610793	38610793	C	G	SNP	DSCR3	ENST00000309117	human	ensembl	74_37	-1	known	missense	c.319	p.E107Q	1.000	pfam_VPS26,pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_VPS26,pfam_Arrestin-like_N,superfamily_Ig_E-set	-	no_errors	DSCR3	HGNC	ENSG00000157538	tier1	-	-	25	0	0.00	15	10	40.00
DSEL	0	genome.wustl.edu	37	18	65180887	65180887	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	18	65180887	65180887	A	-	DEL	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	frame_shift_del	c.989	p.L330fs	0.996	superfamily_Chondroitin_lyas	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451	tier1			49	0	0.00	28	2	6.67
DSP	0	genome.wustl.edu	37	6	7583820	7583820	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	7583820	7583820	G	A	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	missense	c.6325	p.E2109K	0.999	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	tier1	-	-	33	0	0.00	20	16	44.44
DST	0	genome.wustl.edu	37	6	56535438	56535438	+	Splice_Site	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	56535438	56535438	C	G	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	splice_site	c.1115+1	e9+1	1.000	-	-	-	no_errors	DST	HGNC	ENSG00000151914	tier1	-	-	25	0	0.00	29	11	27.50
E2F5	0	genome.wustl.edu	37	8	86118428	86118428	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	86118428	86118428	C	T	SNP	E2F5	ENST00000256117	human	ensembl	74_37	+1	known	missense	c.526	p.H176Y	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F5	HGNC	ENSG00000133740	tier1	-	-	58	0	0.00	33	7	17.50
ECE1	0	genome.wustl.edu	37	1	21582529	21582529	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	21582529	21582529	C	G	SNP	ECE1	ENST00000374893	human	ensembl	74_37	-1	known	missense	c.931	p.E311Q	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298	tier1	-	-	33	0	0.00	37	14	27.45
ECI1	0	genome.wustl.edu	37	16	2296896	2296896	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	2296896	2296896	C	T	SNP	ECI1	ENST00000301729	human	ensembl	74_37	-1	known	silent	c.258	p.E86	0.999	pfam_Crotonase_core_superfam	pfam_Crotonase_core_superfam	-	no_errors	ECI1	HGNC	ENSG00000167969	tier1	-	-	70	0	0.00	41	28	40.58
EEF1DP3	0	genome.wustl.edu	37	13	32527031	32527031	+	RNA	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	13	32527031	32527031	G	A	SNP	EEF1DP3	ENST00000428783	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.732	-	-	-	no_errors	EEF1DP3	HGNC	ENSG00000229715	tier1	-	-	28	0	0.00	15	14	48.28
EFCAB13	0	genome.wustl.edu	37	17	45451874	45451874	+	Nonsense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	45451874	45451874	C	G	SNP	EFCAB13	ENST00000331493	human	ensembl	74_37	+1	known	nonsense	c.914	p.S305*	0.067	NULL	NULL	-	no_errors	EFCAB13	HGNC	ENSG00000178852	tier1	-	-	49	0	0.00	34	16	32.00
EHD1	0	genome.wustl.edu	37	11	64621765	64621765	+	RNA	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	64621765	64621765	C	T	SNP	EHD1	ENST00000488711	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EHD1	HGNC	ENSG00000110047	tier1	-	-	46	0	0.00	39	27	40.91
EIF4ENIF1	0	genome.wustl.edu	37	22	31835930	31835930	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	22	31835930	31835930	T	A	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	74_37	-1	known	missense	c.2894	p.Q965L	1.000	NULL	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708	tier1	-	-	36	0	0.00	34	20	37.04
ELAVL1	0	genome.wustl.edu	37	19	8032642	8032642	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	8032642	8032642	C	G	SNP	ELAVL1	ENST00000351593	human	ensembl	74_37	-1	known	missense	c.544	p.D182H	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL1	HGNC	ENSG00000066044	tier1	-	-	52	0	0.00	37	31	45.59
ELAVL3	0	genome.wustl.edu	37	19	11591457	11591457	+	RNA	DEL	G	G	-			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	11591457	11591457	G	-	DEL	ELAVL3	ENST00000592218	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	ELAVL3	HGNC	ENSG00000196361	tier1			43	0	0.00	50	34	40.48
ELAVL3	0	genome.wustl.edu	37	19	11591462	11591462	+	RNA	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	11591462	11591462	G	T	SNP	ELAVL3	ENST00000592218	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	ELAVL3	HGNC	ENSG00000196361	tier1	-	-	38	0	0.00	45	39	46.43
ENG	0	genome.wustl.edu	37	9	130578263	130578263	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	9	130578263	130578263	G	T	SNP	ENG	ENST00000373203	human	ensembl	74_37	-1	known	missense	c.1811	p.A604D	1.000	NULL	pfam_ZP_dom	-	no_errors	ENG	HGNC	ENSG00000106991	tier1	-	-	46	0	0.00	37	19	33.93
ENSG00000215953	0	genome.wustl.edu	37	5	84823943	84823944	+	RNA	DEL	CA	CA	-			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	5	84823943	84823944	CA	-	DEL	ENSG00000215953	ENST00000401134	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.030:0.032	-	-	-	no_errors	AC026700.1	Clone_based_ensembl_gene	ENSG00000215953	tier1			50	0	0.00	23	3	11.54
ENSG00000221016	0	genome.wustl.edu	37	17	45195869	45195869	+	RNA	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	45195869	45195869	G	C	SNP	ENSG00000221016	ENST00000408089	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AC002558.1	Clone_based_ensembl_gene	ENSG00000221016	tier1	-	-	44	0	0.00	17	17	50.00
ENSG00000257743	0	genome.wustl.edu	37	7	141867247	141867247	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	141867247	141867247	G	A	SNP	ENSG00000257743	ENST00000477922	human	ensembl	74_37	+1	putative	silent	c.2988	p.L996	0.144	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,superfamily_P_trefoil,smart_P_trefoil	-	no_errors	RP11-1220K2.2	Clone_based_vega_gene	ENSG00000257743	tier1	-	-	36	0	0.00	23	17	42.50
ENSG00000259480	0	genome.wustl.edu	37	15	23128493	23128493	+	RNA	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	23128493	23128493	C	T	SNP	ENSG00000259480	ENST00000560053	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-26F2.1	Clone_based_vega_gene	ENSG00000259480	tier1	-	-	52	0	0.00	31	19	38.00
ENSG00000272017	0	genome.wustl.edu	37	6	100016540	100016540	+	RNA	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	100016540	100016540	G	A	SNP	ENSG00000272017	ENST00000607332	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP1-199J3.7	Clone_based_vega_gene	ENSG00000272017	tier1	-	-	38	0	0.00	33	13	28.26
EPB41L3	0	genome.wustl.edu	37	18	5406961	5406961	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	18	5406961	5406961	C	A	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	nonsense	c.2164	p.E722*	1.000	pirsf_Band_41_protein,pfam_SAB_dom	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397	tier1	-	-	100	0	0.00	69	30	30.30
EPB41L3	0	genome.wustl.edu	37	18	5488869	5488869	+	RNA	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	18	5488869	5488869	C	T	SNP	EPB41L3	ENST00000581454	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	EPB41L3	HGNC	ENSG00000082397	tier1	-	-	16	0	0.00	7	4	36.36
EPHA10	0	genome.wustl.edu	37	1	38201051	38201051	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	38201051	38201051	C	T	SNP	EPHA10	ENST00000427468	human	ensembl	74_37	-1	known	missense	c.1369	p.E457K	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317	tier1	-	-	42	0	0.00	31	15	32.61
EWSR1	0	genome.wustl.edu	37	22	29678390	29678390	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	22	29678390	29678390	G	C	SNP	EWSR1	ENST00000414183	human	ensembl	74_37	+1	known	missense	c.443	p.G148A	1.000	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	EWSR1	HGNC	ENSG00000182944	tier1	-	-	56	0	0.00	37	14	27.45
FAM183B	0	genome.wustl.edu	37	7	38725305	38725305	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	38725305	38725305	C	T	SNP	FAM183B	ENST00000409072	human	ensembl	74_37	-1	novel	missense	c.301	p.D101N	0.027	NULL	NULL	-	no_errors	FAM183B	HGNC	ENSG00000164556	tier1	-	-	57	0	0.00	53	21	28.38
FAM230A	0	genome.wustl.edu	37	22	20708800	20708800	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	22	20708800	20708800	G	A	SNP	FAM230A	ENST00000434783	human	ensembl	74_37	+1	known	missense	c.532	p.E178K	0.000	superfamily_Kinase-like_dom	pfam_Ret-finger_pr-like_3_antisense,superfamily_Kinase-like_dom	-	no_errors	FAM230A	HGNC	ENSG00000188280	tier1	-	-	91	0	0.00	73	49	40.16
FAM46B	0	genome.wustl.edu	37	1	27333125	27333125	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	27333125	27333125	G	A	SNP	FAM46B	ENST00000289166	human	ensembl	74_37	-1	known	silent	c.588	p.S196	0.741	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46B	HGNC	ENSG00000158246				22	0	0.00	36	2	5.26
FAM90A27P	0	genome.wustl.edu	37	19	53787529	53787529	+	RNA	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	53787529	53787529	C	G	SNP	FAM90A27P	ENST00000599085	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAM90A27P	HGNC	ENSG00000189348	tier1	-	-	36	0	0.00	36	19	34.55
FER1L6	0	genome.wustl.edu	37	8	125033904	125033904	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	125033904	125033904	G	A	SNP	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	missense	c.2128	p.D710N	1.000	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	FER1L6	HGNC	ENSG00000214814	tier1	-	-	31	0	0.00	35	12	25.53
FLNA	0	genome.wustl.edu	37	X	153589759	153589759	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	153589759	153589759	C	A	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	nonsense	c.3124	p.E1042*	0.952	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	tier1	-	-	37	0	0.00	56	13	18.84
FOLH1	0	genome.wustl.edu	37	11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	49204779	49204779	C	T	SNP	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	missense	c.842	p.R281H	0.843	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	tier1	rs116795343	-	44	0	0.00	36	5	12.20
FOLH1	0	genome.wustl.edu	37	11	49204790	49204790	+	Silent	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	49204790	49204790	A	G	SNP	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	silent	c.831	p.Y277	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	tier1	rs76509850	-	39	0	0.00	31	7	18.42
FREM3	0	genome.wustl.edu	37	4	144614357	144614358	+	Splice_Site	INS	-	-	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	4	144614357	144614358	-	A	INS	FREM3	ENST00000329798	human	ensembl	74_37	-1	putative	splice_site_ins	c.5186-3_5186-2	e2-2	1.000:0.000	-	-	-	no_errors	FREM3	HGNC	ENSG00000183090	tier1			42	0	0.00	13	2	13.33
FUT3	0	genome.wustl.edu	37	19	5844652	5844652	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	5844652	5844652	G	T	SNP	FUT3	ENST00000303225	human	ensembl	74_37	-1	known	missense	c.199	p.L67I	1.000	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT3	HGNC	ENSG00000171124				16	0	0.00	29	2	6.45
GART	0	genome.wustl.edu	37	21	34903861	34903861	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	21	34903861	34903861	C	G	SNP	GART	ENST00000381815	human	ensembl	74_37	-1	known	missense	c.531	p.E177D	0.979	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C_dom,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth_N_dom,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131	tier1	-	-	8	0	0.00	9	4	30.77
GCFC2	0	genome.wustl.edu	37	2	75929334	75929334	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	2	75929334	75929334	C	T	SNP	GCFC2	ENST00000321027	human	ensembl	74_37	-1	known	missense	c.610	p.E204K	1.000	NULL	pfam_GCFC_dom	-	no_errors	GCFC2	HGNC	ENSG00000005436	tier1	-	-	53	0	0.00	44	19	30.16
GGTA1P	0	genome.wustl.edu	37	9	124241446	124241446	+	RNA	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	9	124241446	124241446	G	A	SNP	GGTA1P	ENST00000373793	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	GGTA1P	HGNC	ENSG00000204136	tier1	-	-	20	0	0.00	15	6	28.57
GLIS1	0	genome.wustl.edu	37	1	53980335	53980335	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	53980335	53980335	G	C	SNP	GLIS1	ENST00000312233	human	ensembl	74_37	-1	known	missense	c.1321	p.L441V	0.994	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS1	HGNC	ENSG00000174332	tier1	-	-	51	0	0.00	38	16	29.63
GLRA2	0	genome.wustl.edu	37	X	14627271	14627271	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	14627271	14627271	A	T	SNP	GLRA2	ENST00000218075	human	ensembl	74_37	+1	known	missense	c.874	p.T292S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Glycine_rcpt_A2,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA2	HGNC	ENSG00000101958	tier1	-	-	14	0	0.00	10	20	66.67
GPN2	0	genome.wustl.edu	37	1	27216261	27216261	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	27216261	27216261	G	A	SNP	GPN2	ENST00000374135	human	ensembl	74_37	-1	known	silent	c.327	p.F109	1.000	pfam_Uncharacterised_ATP-bd,superfamily_P-loop_NTPase	pfam_Uncharacterised_ATP-bd,superfamily_P-loop_NTPase	-	no_errors	GPN2	HGNC	ENSG00000142751	tier1	-	-	107	0	0.00	86	49	36.30
GRAMD4	0	genome.wustl.edu	37	22	47054198	47054198	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	22	47054198	47054198	A	G	SNP	GRAMD4	ENST00000361034	human	ensembl	74_37	+1	known	missense	c.398	p.K133R	0.997	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240				25	0	0.00	27	11	28.95
GRAP2	0	genome.wustl.edu	37	22	40365485	40365485	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	22	40365485	40365485	C	A	SNP	GRAP2	ENST00000344138	human	ensembl	74_37	+1	known	missense	c.761	p.A254E	0.070	NULL	pfam_SH3_domain,pfam_SH2,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	GRAP2	HGNC	ENSG00000100351				29	0	0.00	38	2	5.00
GRIK2	0	genome.wustl.edu	37	6	102337692	102337692	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	102337692	102337692	C	T	SNP	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	silent	c.1702	p.L568	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	tier1	-	-	11	0	0.00	20	9	31.03
GRM4	0	genome.wustl.edu	37	6	34003781	34003781	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	34003781	34003781	G	C	SNP	GRM4	ENST00000374181	human	ensembl	74_37	-1	known	missense	c.2106	p.I702M	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493	tier1	-	-	28	0	0.00	35	13	27.08
HAS2	0	genome.wustl.edu	37	8	122626754	122626754	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	122626754	122626754	G	A	SNP	HAS2	ENST00000303924	human	ensembl	74_37	-1	known	silent	c.1254	p.L418	1.000	NULL	pfam_Chitin_synth_fng	-	no_errors	HAS2	HGNC	ENSG00000170961	tier1	-	-	21	0	0.00	24	6	20.00
HAS2	0	genome.wustl.edu	37	8	122626768	122626768	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	122626768	122626768	G	A	SNP	HAS2	ENST00000303924	human	ensembl	74_37	-1	known	nonsense	c.1240	p.Q414*	1.000	NULL	pfam_Chitin_synth_fng	-	no_errors	HAS2	HGNC	ENSG00000170961	tier1	-	-	24	0	0.00	22	8	26.67
HEATR1	0	genome.wustl.edu	37	1	236740143	236740143	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	236740143	236740143	C	T	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	silent	c.2862	p.L954	0.061	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285				32	0	0.00	32	2	5.88
HHIP	0	genome.wustl.edu	37	4	145640083	145640083	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	4	145640083	145640083	C	T	SNP	HHIP	ENST00000296575	human	ensembl	74_37	+1	known	missense	c.1735	p.L579F	1.000	NULL	pfam_Folate_rcpt-like,superfamily_Quinoprot_gluc/sorb_DH,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HHIP	HGNC	ENSG00000164161	tier1	-	-	50	0	0.00	25	10	28.57
HIVEP1	0	genome.wustl.edu	37	6	12121877	12121877	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	12121877	12121877	G	A	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.1849	p.E617K	0.997	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	tier1	-	-	29	0	0.00	35	12	25.53
HMGXB4	0	genome.wustl.edu	37	22	35684359	35684359	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	22	35684359	35684359	G	A	SNP	HMGXB4	ENST00000216106	human	ensembl	74_37	+1	known	missense	c.1597	p.E533K	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	HMGXB4	HGNC	ENSG00000100281	tier1	-	-	13	0	0.00	14	5	26.32
HOXA3	0	genome.wustl.edu	37	7	27147685	27147685	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	27147685	27147685	C	T	SNP	HOXA3	ENST00000317201	human	ensembl	74_37	-1	known	missense	c.1181	p.G394D	0.988	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA3	HGNC	ENSG00000105997				16	0	0.00	16	7	30.43
HOXC4	0	genome.wustl.edu	37	12	54447759	54447759	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	12	54447759	54447759	C	A	SNP	HOXC4	ENST00000430889	human	ensembl	74_37	+1	known	missense	c.53	p.P18H	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXC4	Uniprot_gn	ENSG00000273266	tier1	-	-	61	0	0.00	34	20	37.04
HSDL1	0	genome.wustl.edu	37	16	84163981	84163981	+	Silent	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	84163981	84163981	G	T	SNP	HSDL1	ENST00000219439	human	ensembl	74_37	-1	known	silent	c.276	p.L92	0.977	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSDL1	HGNC	ENSG00000103160	tier1	-	-	42	0	0.00	30	13	30.23
IFI27	0	genome.wustl.edu	37	14	94582247	94582247	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	14	94582247	94582247	C	T	SNP	IFI27	ENST00000444961	human	ensembl	74_37	+1	known	missense	c.251	p.S84L	0.022	pfam_IFI6/IFI27	pfam_IFI6/IFI27	-	no_errors	IFI27	HGNC	ENSG00000165949	tier1	-	-	79	0	0.00	84	30	26.32
IFITM1	0	genome.wustl.edu	37	11	314322	314322	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	314322	314322	G	T	SNP	IFITM1	ENST00000328221	human	ensembl	74_37	+1	known	missense	c.152	p.C51F	1.000	pfam_CD225/Dispanin_fam	pfam_CD225/Dispanin_fam	-	no_errors	IFITM1	HGNC	ENSG00000185885	tier1	-	-	75	0	0.00	48	4	7.69
IGF2R	0	genome.wustl.edu	37	6	160501186	160501186	+	Silent	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	160501186	160501186	C	G	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	silent	c.5712	p.V1904	1.000	pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	tier1	-	-	29	0	0.00	17	12	41.38
IGHMBP2	0	genome.wustl.edu	37	11	68707045	68707045	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	68707045	68707045	G	C	SNP	IGHMBP2	ENST00000255078	human	ensembl	74_37	+1	known	missense	c.2828	p.R943T	0.999	NULL	pfam_R3H_ss-bd,pfam_Znf_AN1,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_R3H_ss-bd,smart_Znf_AN1,pfscan_Znf_AN1,pfscan_R3H_ss-bd,tigrfam_DNA_helicase_put	-	no_errors	IGHMBP2	HGNC	ENSG00000132740	tier1	-	-	62	0	0.00	67	32	32.32
IGLL1	0	genome.wustl.edu	37	22	23917210	23917210	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	22	23917210	23917210	G	C	SNP	IGLL1	ENST00000330377	human	ensembl	74_37	-1	known	missense	c.266	p.S89C	0.004	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	IGLL1	HGNC	ENSG00000128322	tier1	-	-	66	0	0.00	40	16	28.07
INTS7	0	genome.wustl.edu	37	1	212125924	212125924	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	212125924	212125924	G	A	SNP	INTS7	ENST00000440600	human	ensembl	74_37	-1	known	missense	c.2156	p.P719L	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	INTS7	HGNC	ENSG00000143493	tier1	-	-	45	0	0.00	24	11	31.43
ISPD	0	genome.wustl.edu	37	7	16445718	16445718	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	16445718	16445718	G	C	SNP	ISPD	ENST00000407010	human	ensembl	74_37	-1	known	missense	c.502	p.L168V	0.000	pfam_IspD	pfam_IspD	-	no_errors	ISPD	HGNC	ENSG00000214960	tier1	-	-	44	0	0.00	27	17	38.64
JKAMP	0	genome.wustl.edu	37	14	59970584	59970584	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	14	59970584	59970584	C	T	SNP	JKAMP	ENST00000356057	human	ensembl	74_37	+1	known	missense	c.754	p.L252F	1.000	pfam_DUF766	pfam_DUF766	-	no_errors	JKAMP	HGNC	ENSG00000050130				36	0	0.00	35	2	5.41
JUP	0	genome.wustl.edu	37	17	39777080	39777080	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	39777080	39777080	G	A	SNP	JUP	ENST00000540235	human	ensembl	74_37	-1	known	nonsense	c.1489	p.Q497*	0.995	pfam_IF,prints_Keratin_I	pfam_IF,pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo,pfscan_Armadillo,prints_Keratin_I,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801	tier1	-	-	61	0	0.00	51	32	38.10
KALRN	0	genome.wustl.edu	37	3	123813618	123813618	+	RNA	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	123813618	123813618	C	G	SNP	KALRN	ENST00000477496	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.287	-	-	-	no_errors	KALRN	HGNC	ENSG00000160145	tier1	-	-	46	0	0.00	47	25	34.72
KCNQ3	0	genome.wustl.edu	37	8	133187730	133187730	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	133187730	133187730	C	G	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	missense	c.903	p.E301D	0.999	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156	tier1	-	-	69	0	0.00	58	19	24.68
KDM4A-AS1	0	genome.wustl.edu	37	1	44169066	44169066	+	RNA	DEL	T	T	-			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	44169066	44169066	T	-	DEL	KDM4A-AS1	ENST00000453015	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KDM4A-AS1	HGNC	ENSG00000236200	tier1			12	0	0.00	12	5	29.41
KDM4C	0	genome.wustl.edu	37	9	7013942	7013942	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	9	7013942	7013942	A	T	SNP	KDM4C	ENST00000381309	human	ensembl	74_37	+1	known	missense	c.2123	p.E708V	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	tier1	-	-	39	0	0.00	20	11	35.48
KIAA0430	0	genome.wustl.edu	37	16	15692750	15692750	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	15692750	15692750	C	A	SNP	KIAA0430	ENST00000396368	human	ensembl	74_37	-1	known	missense	c.4945	p.D1649Y	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	tier1	-	-	82	0	0.00	53	19	26.03
KIAA2018	0	genome.wustl.edu	37	3	113376936	113376936	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	113376936	113376936	G	T	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	missense	c.3593	p.S1198Y	0.998	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542	tier1	-	-	84	0	0.00	48	31	39.24
KIDINS220	0	genome.wustl.edu	37	2	8930037	8930037	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	2	8930037	8930037	A	C	SNP	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	missense	c.1594	p.F532V	1.000	pfam_KAP_NTPase	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	tier1	-	-	36	0	0.00	22	12	35.29
KIF7	0	genome.wustl.edu	37	15	90171751	90171751	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	90171751	90171751	C	T	SNP	KIF7	ENST00000394412	human	ensembl	74_37	-1	known	missense	c.3931	p.E1311K	0.019	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813	tier1	-	-	27	0	0.00	19	6	24.00
KIF7	0	genome.wustl.edu	37	15	90171829	90171829	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	90171829	90171829	C	T	SNP	KIF7	ENST00000394412	human	ensembl	74_37	-1	known	missense	c.3853	p.E1285K	0.995	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813	tier1	-	-	16	0	0.00	11	4	26.67
KIF7	0	genome.wustl.edu	37	15	90185619	90185619	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	90185619	90185619	G	T	SNP	KIF7	ENST00000394412	human	ensembl	74_37	-1	known	missense	c.2209	p.L737M	0.997	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813				39	0	0.00	57	4	6.56
KIFC1	0	genome.wustl.edu	37	6	33374170	33374170	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	33374170	33374170	C	T	SNP	KIFC1	ENST00000428849	human	ensembl	74_37	+1	known	silent	c.1734	p.L578	0.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649	tier1	-	-	55	0	0.00	33	20	37.04
KNTC1	0	genome.wustl.edu	37	12	123030788	123030788	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	12	123030788	123030788	G	A	SNP	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	silent	c.735	p.K245	1.000	superfamily_WD40_repeat_dom	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	tier1	-	-	56	0	0.00	43	16	27.12
KRT33A	0	genome.wustl.edu	37	17	39505616	39505616	+	Nonsense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	39505616	39505616	G	C	SNP	KRT33A	ENST00000007735	human	ensembl	74_37	-1	known	nonsense	c.413	p.S138*	0.587	pfam_IF,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT33A	HGNC	ENSG00000006059	tier1	-	-	94	0	0.00	72	29	28.71
LCMT1	0	genome.wustl.edu	37	16	25186294	25186294	+	Silent	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	25186294	25186294	G	T	SNP	LCMT1	ENST00000399069	human	ensembl	74_37	+1	known	silent	c.921	p.L307	0.691	pirsf_Leu_CO_MeTrfase_LCMT1	pfam_LCM_MeTrfase,pirsf_Leu_CO_MeTrfase_LCMT1	-	no_errors	LCMT1	HGNC	ENSG00000205629	tier1	-	-	22	0	0.00	21	11	34.38
LILRA6	0	genome.wustl.edu	37	19	54744236	54744236	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	54744236	54744236	G	A	SNP	LILRA6	ENST00000419410	human	ensembl	74_37	-1	known	missense	c.1172	p.A391V	0.000	smart_Ig_sub,smart_Ig_sub2	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRA6	HGNC	ENSG00000244482	tier1	-	-	99	0	0.00	73	31	29.81
LINC00283	0	genome.wustl.edu	37	13	103396902	103396902	+	RNA	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	13	103396902	103396902	C	G	SNP	LINC00283	ENST00000430111	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00283	HGNC	ENSG00000231633	tier1	-	-	45	0	0.00	24	22	47.83
LINC00283	0	genome.wustl.edu	37	13	103397430	103397430	+	RNA	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	13	103397430	103397430	C	G	SNP	LINC00283	ENST00000430111	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	LINC00283	HGNC	ENSG00000231633	tier1	-	-	33	0	0.00	26	8	23.53
LMX1B	0	genome.wustl.edu	37	9	129377800	129377800	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	9	129377800	129377800	G	T	SNP	LMX1B	ENST00000355497	human	ensembl	74_37	+1	known	missense	c.278	p.S93I	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1B	HGNC	ENSG00000136944				36	0	0.00	54	3	5.26
LOC100131825	0	genome.wustl.edu	37	1	159166613	159166613	+	RNA	DEL	T	T	-			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	159166613	159166613	T	-	DEL	LOC100131825	ENST00000415675	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTA-134P22.2	Clone_based_vega_gene	ENSG00000225670	tier1			16	0	0.00	27	5	15.62
LOC101927542	0	genome.wustl.edu	37	1	83912348	83912348	+	RNA	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	83912348	83912348	C	T	SNP	LOC101927542	ENST00000446227	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-413G15.1	Clone_based_vega_gene	ENSG00000231364				19	0	0.00	16	3	15.79
LRRN2	0	genome.wustl.edu	37	1	204587876	204587876	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	204587876	204587876	C	G	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.1245	p.E415D	1.000	smart_Cys-rich_flank_reg_C	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382	tier1	-	-	33	0	0.00	36	16	30.77
LRRTM3	0	genome.wustl.edu	37	10	68857428	68857428	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	10	68857428	68857428	C	T	SNP	LRRTM3	ENST00000361320	human	ensembl	74_37	+1	known	silent	c.1620	p.L540	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM3	HGNC	ENSG00000198739	tier1	-	-	67	0	0.00	52	19	26.76
LSM10	0	genome.wustl.edu	37	1	36859680	36859680	+	Silent	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	36859680	36859680	C	G	SNP	LSM10	ENST00000315732	human	ensembl	74_37	-1	known	silent	c.51	p.L17	1.000	superfamily_LSM_dom	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM10	HGNC	ENSG00000181817	tier1	-	-	60	0	0.00	40	15	27.27
LTB4R	0	genome.wustl.edu	37	14	24785316	24785316	+	Silent	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	14	24785316	24785316	C	G	SNP	LTB4R	ENST00000345363	human	ensembl	74_37	+1	known	silent	c.459	p.L153	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Leukotriene_B4_typ-1_rcpt,prints_Leukotriene_B4_rcpt,prints_GPCR_Rhodpsn	-	no_errors	LTB4R	HGNC	ENSG00000213903	tier1	-	-	22	0	0.00	24	10	29.41
LYSMD1	0	genome.wustl.edu	37	1	151134280	151134280	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	151134280	151134280	C	T	SNP	LYSMD1	ENST00000368908	human	ensembl	74_37	-1	known	silent	c.477	p.K159	1.000	NULL	pfam_LysM_dom,smart_LysM_dom	-	no_errors	LYSMD1	HGNC	ENSG00000163155	tier1	-	-	83	0	0.00	60	39	39.00
MAGEC2	0	genome.wustl.edu	37	X	141290896	141290896	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	141290896	141290896	G	A	SNP	MAGEC2	ENST00000247452	human	ensembl	74_37	-1	known	missense	c.878	p.S293F	0.011	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774	tier1	-	-	21	0	0.00	44	18	29.03
MAP7D2	0	genome.wustl.edu	37	X	20030483	20030483	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	20030483	20030483	G	A	SNP	MAP7D2	ENST00000379643	human	ensembl	74_37	-1	known	nonsense	c.2056	p.Q686*	1.000	NULL	pfam_MAP7	-	no_errors	MAP7D2	HGNC	ENSG00000184368	tier1	-	-	30	0	0.00	7	15	68.18
MARCH6	0	genome.wustl.edu	37	5	10403651	10403651	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	5	10403651	10403651	G	C	SNP	MARCH6	ENST00000274140	human	ensembl	74_37	+1	known	missense	c.1330	p.E444Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH6	HGNC	ENSG00000145495	tier1	-	-	49	0	0.00	44	21	32.31
MARK1	0	genome.wustl.edu	37	1	220791681	220791681	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	220791681	220791681	G	A	SNP	MARK1	ENST00000366917	human	ensembl	74_37	+1	known	missense	c.582	p.M194I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	MARK1	HGNC	ENSG00000116141	tier1	-	-	51	0	0.00	36	14	28.00
MARVELD3	0	genome.wustl.edu	37	16	71668213	71668213	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	71668213	71668213	A	G	SNP	MARVELD3	ENST00000268485	human	ensembl	74_37	+1	known	missense	c.713	p.Y238C	1.000	NULL	NULL	-	no_errors	MARVELD3	HGNC	ENSG00000140832	tier1	-	-	23	0	0.00	14	14	50.00
MATN2	0	genome.wustl.edu	37	8	99033468	99033468	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	99033468	99033468	G	A	SNP	MATN2	ENST00000254898	human	ensembl	74_37	+1	known	missense	c.1855	p.E619K	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561	tier1	-	-	48	0	0.00	31	12	27.91
MCHR2	0	genome.wustl.edu	37	6	100395746	100395746	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	100395746	100395746	C	T	SNP	MCHR2	ENST00000281806	human	ensembl	74_37	-1	known	missense	c.284	p.R95Q	0.388	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor,prints_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034	tier1	-	-	34	0	0.00	23	16	40.00
MCPH1	0	genome.wustl.edu	37	8	6289088	6289088	+	Nonsense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	6289088	6289088	C	G	SNP	MCPH1	ENST00000344683	human	ensembl	74_37	+1	known	nonsense	c.302	p.S101*	0.032	NULL	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom,prints_BRCA1	-	no_errors	MCPH1	HGNC	ENSG00000147316				13	0	0.00	5	7	58.33
MED13	0	genome.wustl.edu	37	17	60032879	60032880	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	60032879	60032880	-	A	INS	MED13	ENST00000397786	human	ensembl	74_37	-1	known	frame_shift_ins	c.5832_5831	p.M1944fs	1.000:1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510	tier1			44	0	0.00	32	26	44.83
METTL25	0	genome.wustl.edu	37	12	82780586	82780586	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	12	82780586	82780586	G	C	SNP	METTL25	ENST00000248306	human	ensembl	74_37	+1	known	missense	c.264	p.M88I	0.009	NULL	NULL	-	no_errors	METTL25	HGNC	ENSG00000127720	tier1	-	-	27	0	0.00	17	12	41.38
METTL2B	0	genome.wustl.edu	37	7	128141942	128141942	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	128141942	128141942	G	T	SNP	METTL2B	ENST00000262432	human	ensembl	74_37	+1	known	missense	c.1109	p.C370F	0.943	pirsf_MeTrfase	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase	-	no_errors	METTL2B	HGNC	ENSG00000165055	tier1	-	-	55	0	0.00	44	4	8.16
MIR509-2	0	genome.wustl.edu	37	X	146340315	146340315	+	RNA	SNP	T	T	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	146340315	146340315	T	G	SNP	MIR509-2	ENST00000390724	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR509-2	HGNC	ENSG00000212013	tier1	-	-	43	0	0.00	87	39	30.95
MTA3	0	genome.wustl.edu	37	2	42931360	42931360	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	2	42931360	42931360	C	G	SNP	MTA3	ENST00000405094	human	ensembl	74_37	+1	known	missense	c.1052	p.S351C	0.009	NULL	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA3	HGNC	ENSG00000057935	tier1	-	-	40	0	0.00	29	15	34.09
MTMR4	0	genome.wustl.edu	37	17	56581711	56581711	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	56581711	56581711	A	T	SNP	MTMR4	ENST00000323456	human	ensembl	74_37	-1	known	missense	c.1438	p.L480M	1.000	NULL	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389				36	0	0.00	30	7	18.92
MTOR	0	genome.wustl.edu	37	1	11288958	11288958	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	11288958	11288958	C	T	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.2797	p.E933K	1.000	pfam_DUF3385_TOR,superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	tier1	-	-	67	0	0.00	61	23	27.38
MUC16	0	genome.wustl.edu	37	19	9073176	9073176	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	9073176	9073176	G	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.14270	p.P4757H	0.003	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	52	0	0.00	43	21	32.81
MYH10	0	genome.wustl.edu	37	17	8393817	8393817	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	8393817	8393817	C	T	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.4695	p.M1565I	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	tier1	-	-	32	0	0.00	21	9	30.00
MYH7	0	genome.wustl.edu	37	14	23886443	23886443	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	14	23886443	23886443	C	G	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	missense	c.4438	p.E1480Q	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	tier1	-	-	35	0	0.00	31	9	22.50
MYLIP	0	genome.wustl.edu	37	6	16129565	16129565	+	Silent	SNP	T	T	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	16129565	16129565	T	C	SNP	MYLIP	ENST00000356840	human	ensembl	74_37	+1	known	silent	c.12	p.Y4	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_N,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,pfscan_Znf_RING,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	MYLIP	HGNC	ENSG00000007944	tier1	-	-	57	0	0.00	35	22	38.60
MYO15A	0	genome.wustl.edu	37	17	18023041	18023041	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	18023041	18023041	C	T	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	silent	c.927	p.Y309	0.089	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	tier1	-	-	94	0	0.00	33	33	50.00
MYOT	0	genome.wustl.edu	37	5	137211532	137211532	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	5	137211532	137211532	C	T	SNP	MYOT	ENST00000239926	human	ensembl	74_37	+1	known	missense	c.371	p.S124L	0.045	NULL	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYOT	HGNC	ENSG00000120729	tier1	-	-	22	0	0.00	18	7	28.00
MYPN	0	genome.wustl.edu	37	10	69961659	69961659	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	10	69961659	69961659	G	A	SNP	MYPN	ENST00000358913	human	ensembl	74_37	+1	known	silent	c.3567	p.V1189	0.993	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYPN	HGNC	ENSG00000138347	tier1	-	-	19	0	0.00	16	7	30.43
NBAS	0	genome.wustl.edu	37	2	15651430	15651430	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	2	15651430	15651430	G	A	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	missense	c.791	p.S264L	0.388	superfamily_Quino_amine_DH_bsu	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	tier1	rs149760582	-	24	0	0.00	10	4	28.57
NBPF20	0	genome.wustl.edu	37	1	148344692	148344692	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	148344692	148344692	G	C	SNP	NBPF20	ENST00000369202	human	ensembl	74_37	-1	known	missense	c.226	p.Q76E	0.059	NULL	pfam_NBPF_dom	-	no_errors	NBPF20	HGNC	ENSG00000203832	tier1	-	-	148	0	0.00	171	35	16.99
NDUFS8	0	genome.wustl.edu	37	11	67800424	67800424	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	67800424	67800424	G	T	SNP	NDUFS8	ENST00000531228	human	ensembl	74_37	+1	known	nonsense	c.199	p.E67*	1.000	NULL	NULL	-	no_errors	NDUFS8	HGNC	ENSG00000110717	tier1	-	-	50	0	0.00	52	29	35.80
NEK1	0	genome.wustl.edu	37	4	170523765	170523765	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	4	170523765	170523765	C	A	SNP	NEK1	ENST00000507142	human	ensembl	74_37	-1	known	missense	c.17	p.R6I	0.513	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601				36	0	0.00	23	2	8.00
NFATC2	0	genome.wustl.edu	37	20	50048903	50048903	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	20	50048903	50048903	G	A	SNP	NFATC2	ENST00000396009	human	ensembl	74_37	-1	known	missense	c.2423	p.S808L	0.998	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC2	HGNC	ENSG00000101096	tier1	-	-	53	0	0.00	67	33	33.00
NFE2L1	0	genome.wustl.edu	37	17	46134843	46134843	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	46134843	46134843	C	T	SNP	NFE2L1	ENST00000362042	human	ensembl	74_37	+1	known	silent	c.951	p.L317	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641	tier1	-	-	42	0	0.00	27	17	38.64
NFYC	0	genome.wustl.edu	37	1	41218824	41218824	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	41218824	41218824	G	T	SNP	NFYC	ENST00000308733	human	ensembl	74_37	+1	known	missense	c.293	p.R98I	1.000	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold	-	no_errors	NFYC	HGNC	ENSG00000066136				35	0	0.00	31	2	6.06
NIPA2	0	genome.wustl.edu	37	15	23034295	23034295	+	RNA	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	23034295	23034295	G	A	SNP	NIPA2	ENST00000559571	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.198	-	-	-	no_errors	NIPA2	HGNC	ENSG00000140157	tier1	-	-	16	0	0.00	18	5	21.74
NLRP5	0	genome.wustl.edu	37	19	56538599	56538599	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	56538599	56538599	G	C	SNP	NLRP5	ENST00000390649	human	ensembl	74_37	+1	known	missense	c.1000	p.E334Q	0.003	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487	tier1	-	-	32	0	0.00	15	12	44.44
NQO2	0	genome.wustl.edu	37	6	3006787	3006787	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	3006787	3006787	A	G	SNP	NQO2	ENST00000338130	human	ensembl	74_37	+1	known	missense	c.1	p.M1V	0.693	NULL	pfam_Flavodoxin_fold,pfam_FMN_Rdtase-like	-	no_errors	NQO2	HGNC	ENSG00000124588	tier1	rs138748428	-	49	0	0.00	40	26	39.39
NSMAF	0	genome.wustl.edu	37	8	59515783	59515783	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	59515783	59515783	G	A	SNP	NSMAF	ENST00000427130	human	ensembl	74_37	-1	known	missense	c.1124	p.S375F	0.013	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,pfam_GRAM,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_GRAM,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NSMAF	HGNC	ENSG00000035681	tier1	-	-	45	0	0.00	34	17	33.33
NUTM1	0	genome.wustl.edu	37	15	34648143	34648143	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	34648143	34648143	C	T	SNP	NUTM1	ENST00000333756	human	ensembl	74_37	+1	known	missense	c.1850	p.S617L	0.005	NULL	NULL	-	no_errors	NUTM1	HGNC	ENSG00000184507	tier1	-	-	39	0	0.00	25	15	37.50
OGFR	0	genome.wustl.edu	37	20	61444660	61444660	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	20	61444660	61444660	C	A	SNP	OGFR	ENST00000290291	human	ensembl	74_37	+1	known	missense	c.1693	p.R565S	0.000	pfam_OGF_rcpt_rpt	pfam_OGF_rcpt,pfam_OGF_rcpt_rpt	-	no_errors	OGFR	HGNC	ENSG00000060491				19	0	0.00	28	2	6.67
OLFM1	0	genome.wustl.edu	37	9	138011671	138011671	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	9	138011671	138011671	G	A	SNP	OLFM1	ENST00000371793	human	ensembl	74_37	+1	known	missense	c.1105	p.A369T	1.000	pfam_Olfac-like,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM1	HGNC	ENSG00000130558	tier1	-	-	17	0	0.00	21	9	30.00
OPA1	0	genome.wustl.edu	37	3	193409881	193409881	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	193409881	193409881	G	C	SNP	OPA1	ENST00000361510	human	ensembl	74_37	+1	known	missense	c.3013	p.D1005H	1.000	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,prints_Dynamin_SF	-	no_errors	OPA1	HGNC	ENSG00000198836	tier1	-	-	65	0	0.00	35	43	55.13
OR2AK2	0	genome.wustl.edu	37	1	248129321	248129321	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	248129321	248129321	C	G	SNP	OR2AK2	ENST00000366480	human	ensembl	74_37	+1	known	missense	c.688	p.L230V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AK2	HGNC	ENSG00000187080	tier1	-	-	60	0	0.00	54	33	37.93
OR4C6	0	genome.wustl.edu	37	11	55432918	55432918	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	55432918	55432918	C	T	SNP	OR4C6	ENST00000314259	human	ensembl	74_37	+1	known	silent	c.276	p.L92	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C6	HGNC	ENSG00000181903	tier1	-	-	22	0	0.00	19	5	20.83
OR4K1	0	genome.wustl.edu	37	14	20404053	20404053	+	Silent	SNP	T	T	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	14	20404053	20404053	T	C	SNP	OR4K1	ENST00000285600	human	ensembl	74_37	+1	known	silent	c.228	p.F76	0.870	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249	tier1	-	-	96	0	0.00	69	18	20.69
OR4N2	0	genome.wustl.edu	37	14	20295898	20295898	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	14	20295898	20295898	C	T	SNP	OR4N2	ENST00000315947	human	ensembl	74_37	+1	known	silent	c.291	p.C97	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N2	HGNC	ENSG00000176294	tier1	-	-	144	0	0.00	140	37	20.90
OXR1	0	genome.wustl.edu	37	8	107758054	107758054	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	107758054	107758054	A	G	SNP	OXR1	ENST00000442977	human	ensembl	74_37	+1	known	missense	c.2453	p.K818R	1.000	pfam_TLDc,smart_TLDc	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830	tier1	-	-	81	0	0.00	75	4	5.06
PABPC4	0	genome.wustl.edu	37	1	40034566	40034567	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	40034566	40034567	AT	-	DEL	PABPC4	ENST00000372858	human	ensembl	74_37	-1	known	frame_shift_del	c.784_783	p.F262fs	1.000:0.999	smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4	HGNC	ENSG00000090621	tier1			42	0	0.00	30	14	31.82
PAPD5	0	genome.wustl.edu	37	16	50261884	50261884	+	Silent	SNP	T	T	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	50261884	50261884	T	C	SNP	PAPD5	ENST00000436909	human	ensembl	74_37	+1	known	silent	c.1890	p.T630	0.002	NULL	pfam_PAP_assoc,pfam_Nucleotidyltransferase	-	no_errors	PAPD5	HGNC	ENSG00000121274	tier1	-	-	47	0	0.00	47	27	36.49
PARL	0	genome.wustl.edu	37	3	183602518	183602518	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	183602518	183602518	G	A	SNP	PARL	ENST00000317096	human	ensembl	74_37	-1	known	silent	c.117	p.L39	0.748	NULL	pfam_Peptidase_S54_rhomboid_dom	-	no_errors	PARL	HGNC	ENSG00000175193	tier1	-	-	95	0	0.00	82	87	51.48
PAX7	0	genome.wustl.edu	37	1	19018262	19018262	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	19018262	19018262	G	A	SNP	PAX7	ENST00000375375	human	ensembl	74_37	+1	known	missense	c.601	p.E201K	1.000	NULL	pfam_Paired_dom,pfam_Homeobox_dom,pfam_Pax7,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX7	HGNC	ENSG00000009709	tier1	-	-	17	0	0.00	16	8	33.33
PCDHB14	0	genome.wustl.edu	37	5	140603611	140603611	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	5	140603611	140603611	C	G	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	missense	c.534	p.F178L	0.883	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	tier1	-	-	26	0	0.00	34	11	24.44
PCDHB14	0	genome.wustl.edu	37	5	140603882	140603882	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	5	140603882	140603882	C	G	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	missense	c.805	p.L269V	0.314	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	tier1	-	-	28	0	0.00	37	4	9.76
PDPR	0	genome.wustl.edu	37	16	70187389	70187389	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	70187389	70187389	G	A	SNP	PDPR	ENST00000288050	human	ensembl	74_37	+1	known	silent	c.2148	p.E716	1.000	pfam_GCV_T_N	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857	tier1	-	-	59	0	0.00	43	17	28.33
PEX2	0	genome.wustl.edu	37	8	77912372	77912372	+	RNA	DEL	A	A	-			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	77912372	77912372	A	-	DEL	PEX2	ENST00000520203	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	PEX2	HGNC	ENSG00000164751	tier1			20	0	0.00	25	3	10.71
PHACTR3	0	genome.wustl.edu	37	20	58342365	58342365	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	20	58342365	58342365	G	A	SNP	PHACTR3	ENST00000371015	human	ensembl	74_37	+1	known	silent	c.666	p.E222	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495	tier1	-	-	30	0	0.00	22	9	29.03
PHC3	0	genome.wustl.edu	37	3	169820479	169820479	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	169820479	169820479	G	C	SNP	PHC3	ENST00000495893	human	ensembl	74_37	-1	known	missense	c.2621	p.S874C	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC3	HGNC	ENSG00000173889	tier1	-	-	27	0	0.00	18	19	51.35
PI4KAP2	0	genome.wustl.edu	37	22	21846329	21846329	+	RNA	DEL	C	C	-			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	22	21846329	21846329	C	0	DEL	PI4KAP2	ENST00000450651	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	PI4KAP2	HGNC	ENSG00000183506				10	0	0.00	4	2	33.33
PIK3CA	0	genome.wustl.edu	37	3	178948136	178948136	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	178948136	178948136	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.2908	p.E970K	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	tier1	-	-	29	0	0.00	18	15	45.45
PIK3R5	0	genome.wustl.edu	37	17	8791843	8791843	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	8791843	8791843	A	T	SNP	PIK3R5	ENST00000447110	human	ensembl	74_37	-1	known	missense	c.1261	p.F421I	1.000	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R5	HGNC	ENSG00000141506	tier1	-	-	47	0	0.00	35	19	35.19
PIR	0	genome.wustl.edu	37	X	15403203	15403203	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	15403203	15403203	G	C	SNP	PIR	ENST00000380420	human	ensembl	74_37	-1	known	missense	c.796	p.Q266E	0.898	pfam_Pirin_C_dom,superfamily_RmlC_Cupin,pirsf_Pirin	pfam_Pirin_C_dom,pfam_Pirin_N_dom,superfamily_RmlC_Cupin,pirsf_Pirin	-	no_errors	PIR	HGNC	ENSG00000087842	tier1	-	-	16	0	0.00	6	17	73.91
PKDCC	0	genome.wustl.edu	37	2	42281407	42281407	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	2	42281407	42281407	G	A	SNP	PKDCC	ENST00000294964	human	ensembl	74_37	+1	known	missense	c.994	p.E332K	0.999	pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	PKDCC	HGNC	ENSG00000162878	tier1	rs201349790	-	27	0	0.00	10	13	56.52
PKM	0	genome.wustl.edu	37	15	72502159	72502159	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	72502159	72502159	G	A	SNP	PKM	ENST00000319622	human	ensembl	74_37	-1	known	silent	c.420	p.L140	0.601	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase-like_insert_dom,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKM	HGNC	ENSG00000067225	tier1	-	-	46	0	0.00	37	28	43.08
PLA2G2A	0	genome.wustl.edu	37	1	20305040	20305040	+	RNA	SNP	T	T	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	20305040	20305040	T	C	SNP	PLA2G2A	ENST00000496748	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLA2G2A	HGNC	ENSG00000188257	tier1	-	-	63	0	0.00	55	29	34.12
PLEKHG5	0	genome.wustl.edu	37	1	6530391	6530391	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	6530391	6530391	C	G	SNP	PLEKHG5	ENST00000537245	human	ensembl	74_37	-1	known	missense	c.1942	p.D648H	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG5	HGNC	ENSG00000171680	tier1	-	-	41	0	0.00	36	23	38.98
PLK3	0	genome.wustl.edu	37	1	45269890	45269890	+	Silent	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	45269890	45269890	G	C	SNP	PLK3	ENST00000372201	human	ensembl	74_37	+1	known	silent	c.1314	p.L438	0.988	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK3	HGNC	ENSG00000173846	tier1	-	-	29	0	0.00	24	11	31.43
PNN	0	genome.wustl.edu	37	14	39651779	39651779	+	RNA	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	14	39651779	39651779	C	T	SNP	PNN	ENST00000557680	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.219	-	-	-	no_errors	PNN	HGNC	ENSG00000100941	tier1	-	-	8	0	0.00	8	5	38.46
PNPLA3	0	genome.wustl.edu	37	22	44330533	44330533	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	22	44330533	44330533	C	T	SNP	PNPLA3	ENST00000216180	human	ensembl	74_37	+1	known	silent	c.744	p.F248	1.000	superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA3	HGNC	ENSG00000100344	tier1	-	-	90	0	0.00	57	24	29.63
PPP1R37	0	genome.wustl.edu	37	19	45649660	45649660	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	45649660	45649660	C	T	SNP	PPP1R37	ENST00000221462	human	ensembl	74_37	+1	known	missense	c.2006	p.S669F	0.969	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	PPP1R37	HGNC	ENSG00000104866	tier1	-	-	54	0	0.00	50	16	24.24
PRIM1	0	genome.wustl.edu	37	12	57140622	57140622	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	12	57140622	57140622	G	C	SNP	PRIM1	ENST00000338193	human	ensembl	74_37	-1	known	missense	c.385	p.P129A	0.923	pfam_DNA_primase_S,tigrfam_DNA_primase_ssu_euk/arc	pfam_DNA_primase_S,tigrfam_DNA_primase_ssu_euk/arc	-	no_errors	PRIM1	HGNC	ENSG00000198056	tier1	-	-	82	0	0.00	48	39	44.83
PRM2	0	genome.wustl.edu	37	16	11370120	11370120	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	11370120	11370120	C	T	SNP	PRM2	ENST00000241808	human	ensembl	74_37	-1	known	silent	c.108	p.L36	0.002	pfam_Protamine_P2	pfam_Protamine_P2	-	no_errors	PRM2	HGNC	ENSG00000122304	tier1	-	-	68	0	0.00	61	31	33.70
PRMT7	0	genome.wustl.edu	37	16	68371375	68371376	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	68371375	68371376	-	T	INS	PRMT7	ENST00000339507	human	ensembl	74_37	+1	known	frame_shift_ins	c.405_406	p.C135fs	0.724:0.757	pirsf_Arg_MeTrfase_PRMT7	pfam_Ribosomal-L11_MeTrfase_PrmA,pirsf_Arg_MeTrfase_PRMT7	-	no_errors	PRMT7	HGNC	ENSG00000132600	tier1			58	0	0.00	29	15	34.09
PRPF8	0	genome.wustl.edu	37	17	1561597	1561597	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	1561597	1561597	G	C	SNP	PRPF8	ENST00000304992	human	ensembl	74_37	-1	known	missense	c.5455	p.L1819V	1.000	pfam_PRP8_domainIV	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_PRO8NT,pfam_Prp8_U5-snRNA-bd,pfam_PROCT,pfam_RRM_spliceosomal_PrP8,pfam_JAB_MPN_dom,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB_MPN_dom	-	no_errors	PRPF8	HGNC	ENSG00000174231	tier1	-	-	94	0	0.00	102	38	26.95
PRR23B	0	genome.wustl.edu	37	3	138739278	138739278	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	138739278	138739278	C	T	SNP	PRR23B	ENST00000329447	human	ensembl	74_37	-1	known	missense	c.226	p.V76I	0.015	pfam_UPF0572	pfam_UPF0572	-	no_errors	PRR23B	HGNC	ENSG00000184814	tier1	-	-	32	0	0.00	27	4	12.90
PRRC2A	0	genome.wustl.edu	37	6	31600709	31600709	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	31600709	31600709	G	C	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	missense	c.4259	p.G1420A	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469	tier1	-	-	35	0	0.00	17	17	50.00
PSMC4	0	genome.wustl.edu	37	19	40478056	40478056	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	40478056	40478056	G	A	SNP	PSMC4	ENST00000157812	human	ensembl	74_37	+1	known	missense	c.40	p.E14K	1.000	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275	tier1	-	-	18	0	0.00	29	10	25.64
PTENP1	0	genome.wustl.edu	37	9	33676330	33676330	+	RNA	SNP	T	T	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	9	33676330	33676330	T	C	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984	tier1	-	-	73	0	0.00	24	34	58.62
PTPN11	0	genome.wustl.edu	37	12	112924299	112924299	+	Silent	SNP	C	C	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	12	112924299	112924299	C	A	SNP	PTPN11	ENST00000351677	human	ensembl	74_37	+1	known	silent	c.1245	p.V415	0.984	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2	-	no_errors	PTPN11	HGNC	ENSG00000179295	tier1	-	-	34	0	0.00	22	14	38.89
PTPN13	0	genome.wustl.edu	37	4	87686556	87686556	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	4	87686556	87686556	G	A	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	silent	c.4173	p.V1391	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629	tier1	-	-	54	0	0.00	15	27	64.29
PTPRQ	0	genome.wustl.edu	37	12	80900352	80900352	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	12	80900352	80900352	G	A	SNP	PTPRQ	ENST00000266688	human	ensembl	74_37	+1	known	silent	c.2448	p.L816	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRQ	HGNC	ENSG00000139304	tier1	-	-	41	0	0.00	17	6	26.09
PTPRU	0	genome.wustl.edu	37	1	29631863	29631863	+	Splice_Site	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	29631863	29631863	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	splice_site	c.2774-1	e19-1	1.000	-	-	-	no_errors	PTPRU	HGNC	ENSG00000060656	tier1	-	-	25	0	0.00	15	12	44.44
PXN	0	genome.wustl.edu	37	12	120651990	120651990	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	12	120651990	120651990	G	A	SNP	PXN	ENST00000267257	human	ensembl	74_37	-1	known	missense	c.1351	p.H451Y	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM,prints_Paxillin	-	no_errors	PXN	HGNC	ENSG00000089159	tier1	-	-	42	0	0.00	27	24	46.15
PYGM	0	genome.wustl.edu	37	11	64527313	64527313	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	64527313	64527313	C	G	SNP	PYGM	ENST00000164139	human	ensembl	74_37	-1	known	missense	c.58	p.A20P	1.000	pirsf_Glyco_trans_35	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGM	HGNC	ENSG00000068976	tier1	-	-	52	0	0.00	55	24	30.38
RBM24	0	genome.wustl.edu	37	6	17292448	17292449	+	RNA	INS	-	-	AAA			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	17292448	17292449	-	AAA	INS	RBM24	ENST00000504055	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997:0.915	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183	tier1			10	0	0.00	6	3	33.33
RFX5	0	genome.wustl.edu	37	1	151314765	151314765	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	151314765	151314765	C	T	SNP	RFX5	ENST00000290524	human	ensembl	74_37	-1	known	missense	c.1748	p.G583E	0.013	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX5	HGNC	ENSG00000143390	tier1	-	-	22	0	0.00	18	11	37.93
RGS11	0	genome.wustl.edu	37	16	320792	320792	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	320792	320792	G	A	SNP	RGS11	ENST00000397770	human	ensembl	74_37	-1	known	nonsense	c.1018	p.R340*	0.996	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS11	HGNC	ENSG00000076344	tier1	-	-	307	0	0.00	221	127	36.49
RNF185	0	genome.wustl.edu	37	22	31592935	31592935	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	22	31592935	31592935	C	G	SNP	RNF185	ENST00000326132	human	ensembl	74_37	+1	known	missense	c.322	p.P108A	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF185	HGNC	ENSG00000138942	tier1	-	-	50	0	0.00	39	18	31.58
RPF1	0	genome.wustl.edu	37	1	84961569	84961569	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	84961569	84961569	G	C	SNP	RPF1	ENST00000370654	human	ensembl	74_37	+1	known	missense	c.704	p.R235T	1.000	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	RPF1	HGNC	ENSG00000117133	tier1	-	-	19	0	0.00	18	7	28.00
RPL10L	0	genome.wustl.edu	37	14	47120593	47120593	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	14	47120593	47120593	C	G	SNP	RPL10L	ENST00000298283	human	ensembl	74_37	-1	known	missense	c.347	p.R116P	1.000	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10L	HGNC	ENSG00000165496	tier1	-	-	72	0	0.00	41	15	26.79
RPRM	0	genome.wustl.edu	37	2	154334906	154334906	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	2	154334906	154334906	C	T	SNP	RPRM	ENST00000325926	human	ensembl	74_37	-1	known	silent	c.174	p.Q58	1.000	NULL	NULL	-	no_errors	RPRM	HGNC	ENSG00000177519	tier1	-	-	25	0	0.00	30	14	31.82
RPS6KA6	0	genome.wustl.edu	37	X	83361419	83361419	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	83361419	83361419	C	A	SNP	RPS6KA6	ENST00000262752	human	ensembl	74_37	-1	known	missense	c.1319	p.C440F	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133	tier1	-	-	18	0	0.00	21	19	47.50
RSF1	0	genome.wustl.edu	37	11	77383154	77383154	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	77383154	77383154	C	T	SNP	RSF1	ENST00000308488	human	ensembl	74_37	-1	known	silent	c.3684	p.K1228	0.961	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	RSF1	HGNC	ENSG00000048649	tier1	-	-	54	0	0.00	17	20	54.05
RTBDN	0	genome.wustl.edu	37	19	12940696	12940696	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	12940696	12940696	G	C	SNP	RTBDN	ENST00000322912	human	ensembl	74_37	-1	known	missense	c.194	p.P65R	0.085	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	RTBDN	HGNC	ENSG00000132026	tier1	-	-	61	0	0.00	59	27	31.40
RUNDC3B	0	genome.wustl.edu	37	7	87436700	87436700	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	87436700	87436700	G	A	SNP	RUNDC3B	ENST00000338056	human	ensembl	74_37	+1	known	silent	c.1020	p.K340	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3B	HGNC	ENSG00000105784	tier1	-	-	50	0	0.00	36	17	32.08
RUNX1T1	0	genome.wustl.edu	37	8	93074912	93074912	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	93074912	93074912	G	A	SNP	RUNX1T1	ENST00000517493	human	ensembl	74_37	-1	known	silent	c.114	p.S38	1.000	NULL	NULL	-	no_errors	RUNX1T1	HGNC	ENSG00000079102	tier1	-	-	30	0	0.00	22	12	35.29
RYR1	0	genome.wustl.edu	37	19	39062663	39062663	+	Nonsense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	39062663	39062663	C	G	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	nonsense	c.13751	p.S4584*	1.000	pfam_Ryanrecept_TM4-6	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	tier1	-	-	41	0	0.00	36	20	35.71
SACS	0	genome.wustl.edu	37	13	23913508	23913508	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	13	23913508	23913508	T	C	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.4507	p.M1503V	1.000	superfamily_HATPase_ATP-bd	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	tier1	-	-	38	0	0.00	12	11	47.83
SARM1	0	genome.wustl.edu	37	17	26723220	26723220	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	26723220	26723220	G	T	SNP	SARM1	ENST00000457710	human	ensembl	74_37	+1	novel	missense	c.1988	p.R663L	1.000	smart_TIR_dom	pfam_SAM_2,pfam_SAM_type1,superfamily_ARM-type_fold,superfamily_TIR_dom,superfamily_SAM/pointed,smart_SAM,smart_TIR_dom,pfscan_SAM	-	no_errors	SARM1	HGNC	ENSG00000004139				13	0	0.00	22	2	8.33
SCAPER	0	genome.wustl.edu	37	15	77057706	77057706	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	77057706	77057706	C	G	SNP	SCAPER	ENST00000324767	human	ensembl	74_37	-1	known	missense	c.1585	p.E529Q	1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	tier1	-	-	28	0	0.00	21	14	40.00
SCAPER	0	genome.wustl.edu	37	15	77067388	77067388	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	77067388	77067388	C	T	SNP	SCAPER	ENST00000324767	human	ensembl	74_37	-1	known	silent	c.843	p.V281	0.230	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	tier1	-	-	42	0	0.00	33	20	37.74
SCARNA7	0	genome.wustl.edu	37	3	160232848	160232848	+	RNA	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	160232848	160232848	C	T	SNP	SCARNA7	ENST00000458797	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SCARNA7	HGNC	ENSG00000238741	tier1	-	-	25	0	0.00	28	7	20.00
SCEL	0	genome.wustl.edu	37	13	78191993	78191993	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	13	78191993	78191993	C	T	SNP	SCEL	ENST00000349847	human	ensembl	74_37	+1	known	nonsense	c.1567	p.Q523*	0.972	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	SCEL	HGNC	ENSG00000136155	tier1	-	-	22	0	0.00	18	13	41.94
SGK494	0	genome.wustl.edu	37	17	26938832	26938832	+	RNA	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	26938832	26938832	G	C	SNP	SGK494	ENST00000526073	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	SGK494	Clone_based_vega_gene	ENSG00000167524	tier1	-	-	39	0	0.00	29	13	30.95
SLC16A4	0	genome.wustl.edu	37	1	110931944	110931944	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	110931944	110931944	A	G	SNP	SLC16A4	ENST00000369779	human	ensembl	74_37	-1	known	missense	c.2	p.M1T	1.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A4	HGNC	ENSG00000168679	tier1	-	-	31	0	0.00	17	7	29.17
SLC16A7	0	genome.wustl.edu	37	12	60173438	60173438	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	12	60173438	60173438	C	T	SNP	SLC16A7	ENST00000261187	human	ensembl	74_37	+1	known	missense	c.1415	p.S472L	1.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A7	HGNC	ENSG00000118596	tier1	-	-	40	0	0.00	31	4	11.43
SLC18A1	0	genome.wustl.edu	37	8	20036783	20036783	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	20036783	20036783	G	T	SNP	SLC18A1	ENST00000276373	human	ensembl	74_37	-1	known	missense	c.337	p.P113T	0.188	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Multidrug-R	-	no_errors	SLC18A1	HGNC	ENSG00000036565	tier1	-	-	87	0	0.00	57	4	6.56
SLC1A6	0	genome.wustl.edu	37	19	15083545	15083545	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	15083545	15083545	G	A	SNP	SLC1A6	ENST00000430939	human	ensembl	74_37	-1	putative	missense	c.191	p.S64F	1.000	NULL	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143	tier1	-	-	32	0	0.00	23	5	17.86
SLC24A1	0	genome.wustl.edu	37	15	65943238	65943238	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	65943238	65943238	C	T	SNP	SLC24A1	ENST00000261892	human	ensembl	74_37	+1	known	silent	c.2751	p.I917	0.878	tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A1	HGNC	ENSG00000074621	tier1	-	-	39	0	0.00	35	10	22.22
SLC29A4	0	genome.wustl.edu	37	7	5336607	5336607	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	5336607	5336607	G	A	SNP	SLC29A4	ENST00000297195	human	ensembl	74_37	+1	known	silent	c.660	p.T220	1.000	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A4	HGNC	ENSG00000164638	tier1	-	-	58	0	0.00	72	6	7.69
SLC44A2	0	genome.wustl.edu	37	19	10747198	10747198	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	10747198	10747198	C	T	SNP	SLC44A2	ENST00000335757	human	ensembl	74_37	+1	known	missense	c.1433	p.A478V	1.000	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A2	HGNC	ENSG00000129353	tier1	-	-	45	0	0.00	21	16	43.24
SLC7A13	0	genome.wustl.edu	37	8	87229753	87229753	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	87229753	87229753	C	T	SNP	SLC7A13	ENST00000297524	human	ensembl	74_37	-1	known	missense	c.1125	p.M375I	0.000	pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A13	HGNC	ENSG00000164893	tier1	-	-	53	0	0.00	17	13	43.33
SMC2	0	genome.wustl.edu	37	9	106901433	106901433	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	9	106901433	106901433	C	T	SNP	SMC2	ENST00000286398	human	ensembl	74_37	+1	known	missense	c.3431	p.S1144L	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824				16	0	0.00	14	9	39.13
SNAPC4	0	genome.wustl.edu	37	9	139282959	139282959	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	9	139282959	139282959	C	T	SNP	SNAPC4	ENST00000298532	human	ensembl	74_37	-1	known	missense	c.1060	p.D354N	1.000	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	SNAPC4	HGNC	ENSG00000165684	tier1	-	-	28	0	0.00	20	12	37.50
SNF8	0	genome.wustl.edu	37	17	47007863	47007863	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	47007863	47007863	C	G	SNP	SNF8	ENST00000502492	human	ensembl	74_37	-1	known	missense	c.751	p.E251Q	1.000	NULL	pfam_EAP30,pirsf_ESCRT-2_cplx_Snf8	-	no_errors	SNF8	HGNC	ENSG00000159210	tier1	-	-	43	0	0.00	37	19	33.93
SNORD114-5	0	genome.wustl.edu	37	14	101421716	101421716	+	RNA	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	14	101421716	101421716	G	A	SNP	SNORD114-5	ENST00000362928	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.050	-	-	-	no_errors	SNORD114-5	HGNC	ENSG00000199798	tier1	-	-	48	0	0.00	27	19	41.30
SRP54	0	genome.wustl.edu	37	14	35480717	35480717	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	14	35480717	35480717	A	G	SNP	SRP54	ENST00000216774	human	ensembl	74_37	+1	known	missense	c.488	p.Y163C	1.000	pfam_SRP54_GTPase_dom,pfam_CobW/HypB/UreG_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_SRP54_GTPase_dom,tigrfam_SRP54_euk	pfam_SRP54_GTPase_dom,pfam_Signal_recog_particle_SRP54_M,pfam_Signal_recog_particl_SRP54_hlx,pfam_CobW/HypB/UreG_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP54_M,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom,tigrfam_SRP54_euk	-	no_errors	SRP54	HGNC	ENSG00000100883	tier1	-	-	39	0	0.00	26	6	18.75
STPG1	0	genome.wustl.edu	37	1	24710447	24710447	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	24710447	24710447	G	A	SNP	STPG1	ENST00000337248	human	ensembl	74_37	-1	known	missense	c.236	p.P79L	0.931	NULL	NULL	-	no_errors	STPG1	HGNC	ENSG00000001460	tier1	rs138455088	-	51	0	0.00	26	20	43.48
STRADA	0	genome.wustl.edu	37	17	61780982	61780982	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	61780982	61780982	C	G	SNP	STRADA	ENST00000336174	human	ensembl	74_37	-1	known	missense	c.1273	p.E425Q	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STRADA	HGNC	ENSG00000266173	tier1	-	-	30	0	0.00	28	28	50.00
SUV420H2	0	genome.wustl.edu	37	19	55853307	55853307	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	55853307	55853307	G	A	SNP	SUV420H2	ENST00000255613	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H2	HGNC	ENSG00000133247	tier1	-	-	61	0	0.00	58	35	37.63
SV2C	0	genome.wustl.edu	37	5	75427799	75427799	+	Nonsense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	5	75427799	75427799	C	G	SNP	SV2C	ENST00000502798	human	ensembl	74_37	+1	known	nonsense	c.224	p.S75*	1.000	superfamily_MFS_dom_general_subst_transpt,tigrfam_SV2	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2C	HGNC	ENSG00000122012	tier1	-	-	29	0	0.00	6	9	60.00
SYNJ1	0	genome.wustl.edu	37	21	34011322	34011322	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	21	34011322	34011322	T	A	SNP	SYNJ1	ENST00000433931	human	ensembl	74_37	-1	known	missense	c.3928	p.M1310L	0.000	NULL	pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ1	HGNC	ENSG00000159082	tier1	-	-	82	0	0.00	85	31	26.72
SYNRG	0	genome.wustl.edu	37	17	35900600	35900600	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	35900600	35900600	C	T	SNP	SYNRG	ENST00000339208	human	ensembl	74_37	-1	known	missense	c.3248	p.R1083H	0.997	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114	tier1	-	-	73	0	0.00	35	22	38.60
SYTL2	0	genome.wustl.edu	37	11	85437481	85437481	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	85437481	85437481	C	T	SNP	SYTL2	ENST00000359152	human	ensembl	74_37	-1	known	missense	c.1591	p.E531K	0.010	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYTL2	HGNC	ENSG00000137501	tier1	-	-	29	0	0.00	16	10	38.46
TAF6L	0	genome.wustl.edu	37	11	62554015	62554015	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	62554015	62554015	G	A	SNP	TAF6L	ENST00000294168	human	ensembl	74_37	+1	known	missense	c.1116	p.M372I	1.000	NULL	pfam_TAF_TATA-bd,pfam_DUF1546,superfamily_Histone-fold,smart_TAF_TATA-bd	-	no_errors	TAF6L	HGNC	ENSG00000162227	tier1	-	-	12	0	0.00	14	4	22.22
TBC1D10B	0	genome.wustl.edu	37	16	30380585	30380585	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	30380585	30380585	T	C	SNP	TBC1D10B	ENST00000409939	human	ensembl	74_37	-1	known	missense	c.920	p.Y307C	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10B	HGNC	ENSG00000169221	tier1	-	-	40	0	0.00	33	32	49.23
TBC1D29	0	genome.wustl.edu	37	17	28890301	28890301	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	28890301	28890301	G	A	SNP	TBC1D29	ENST00000579181	human	ensembl	74_37	+1	known	missense	c.311	p.S104N	0.904	NULL	superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D29	HGNC	ENSG00000266733				33	0	0.00	42	5	10.64
TBC1D29	0	genome.wustl.edu	37	17	28890361	28890361	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	28890361	28890361	G	A	SNP	TBC1D29	ENST00000579181	human	ensembl	74_37	+1	known	missense	c.371	p.R124Q	0.562	NULL	superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D29	HGNC	ENSG00000266733				22	0	0.00	26	2	7.14
TEK	0	genome.wustl.edu	37	9	27158043	27158043	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	9	27158043	27158043	G	C	SNP	TEK	ENST00000380036	human	ensembl	74_37	+1	known	missense	c.267	p.K89N	1.000	pfam_Tyr_kin_Tie2_Ig-like_dom-1_N	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	tier1	-	-	79	0	0.00	22	36	62.07
TEX11	0	genome.wustl.edu	37	X	69871378	69871378	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	69871378	69871378	C	T	SNP	TEX11	ENST00000344304	human	ensembl	74_37	-1	known	missense	c.1450	p.E484K	0.173	smart_TPR_repeat	pfam_Meiosis_specific_SPO22,smart_TPR_repeat	-	no_errors	TEX11	HGNC	ENSG00000120498	tier1	-	-	23	0	0.00	13	27	67.50
THAP3	0	genome.wustl.edu	37	1	6693086	6693086	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	6693086	6693086	C	G	SNP	THAP3	ENST00000054650	human	ensembl	74_37	+1	known	missense	c.669	p.C223W	0.004	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP3	HGNC	ENSG00000041988	tier1	-	-	22	0	0.00	30	14	31.82
THAP9-AS1	0	genome.wustl.edu	37	4	83821709	83821709	+	RNA	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	4	83821709	83821709	G	A	SNP	THAP9-AS1	ENST00000503704	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	THAP9-AS1	HGNC	ENSG00000251022	tier1	-	-	8	0	0.00	10	10	50.00
TIE1	0	genome.wustl.edu	37	1	43783285	43783285	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	43783285	43783285	C	T	SNP	TIE1	ENST00000372476	human	ensembl	74_37	+1	known	silent	c.2671	p.L891	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056				22	0	0.00	28	3	9.68
TMEM177	0	genome.wustl.edu	37	2	120443383	120443383	+	RNA	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	2	120443383	120443383	C	T	SNP	TMEM177	ENST00000496203	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TMEM177	HGNC	ENSG00000144120	tier1	-	-	54	0	0.00	28	12	30.00
TNFAIP8	0	genome.wustl.edu	37	5	118729075	118729075	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	5	118729075	118729075	G	A	SNP	TNFAIP8	ENST00000504771	human	ensembl	74_37	+1	known	silent	c.596	p.*199	0.999	NULL	pfam_DUF758	-	no_errors	TNFAIP8	HGNC	ENSG00000145779	tier1	-	-	51	0	0.00	12	16	57.14
TNRC18	0	genome.wustl.edu	37	7	5427355	5427355	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	5427355	5427355	C	T	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	silent	c.2100	p.L700	1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095	tier1	-	-	20	0	0.00	31	11	26.19
TNS4	0	genome.wustl.edu	37	17	38652532	38652532	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	38652532	38652532	C	T	SNP	TNS4	ENST00000254051	human	ensembl	74_37	-1	known	missense	c.146	p.G49E	1.000	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTB/PI_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746	tier1	-	-	9	0	0.00	13	9	40.91
TOP3B	0	genome.wustl.edu	37	22	22322028	22322028	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	22	22322028	22322028	G	A	SNP	TOP3B	ENST00000357179	human	ensembl	74_37	-1	known	missense	c.799	p.R267W	1.000	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain	pfam_Topo_IA_cen,pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3B	HGNC	ENSG00000100038				45	0	0.00	48	3	5.88
TP53	0	genome.wustl.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	7578212	7578212	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.637	p.R213*	0.893	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	461	0	0.00	299	179	37.45
TP53	0	genome.wustl.edu	37	17	7578527	7578527	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	7578527	7578527	A	G	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.403	p.C135R	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	287	0	0.00	202	135	40.06
TPM3	0	genome.wustl.edu	37	1	154155547	154155547	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	154155547	154155547	G	A	SNP	TPM3	ENST00000330188	human	ensembl	74_37	-1	known	silent	c.49	p.L17	1.000	pfam_Tropomyosin	pfam_Tropomyosin,superfamily_HR1_rho-bd,prints_Tropomyosin	-	no_errors	TPM3	HGNC	ENSG00000143549	tier1	-	-	35	0	0.00	35	17	32.69
TPRXL	0	genome.wustl.edu	37	3	14106434	14106434	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	14106434	14106434	G	A	SNP	TPRXL	ENST00000326972	human	ensembl	74_37	+1	known	silent	c.758	p.*253	0.000	NULL	NULL	-	no_errors	TPRXL	HGNC	ENSG00000180438	tier1	-	-	36	0	0.00	43	15	25.86
TRHDE	0	genome.wustl.edu	37	12	72956810	72956810	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	12	72956810	72956810	C	T	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	nonsense	c.1897	p.Q633*	0.925	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657				17	0	0.00	12	5	29.41
TRIOBP	0	genome.wustl.edu	37	22	38109392	38109392	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	22	38109392	38109392	G	C	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	missense	c.430	p.D144H	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				22	0	0.00	22	3	12.00
TRPM4	0	genome.wustl.edu	37	19	49705305	49705305	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	49705305	49705305	C	T	SNP	TRPM4	ENST00000252826	human	ensembl	74_37	+1	known	missense	c.3038	p.S1013F	0.211	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529	tier1	-	-	32	0	0.00	36	15	29.41
TRPV5	0	genome.wustl.edu	37	7	142612479	142612479	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	142612479	142612479	G	A	SNP	TRPV5	ENST00000265310	human	ensembl	74_37	-1	known	silent	c.1284	p.I428	1.000	prints_TRPV5/TRPV6,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV5,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412	tier1	-	-	40	0	0.00	16	12	42.86
TRRAP	0	genome.wustl.edu	37	7	98509816	98509816	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	98509816	98509816	G	A	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.2179	p.E727K	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	tier1	-	-	74	0	0.00	55	29	34.52
TSC2	0	genome.wustl.edu	37	16	2127484	2127484	+	RNA	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	2127484	2127484	C	T	SNP	TSC2	ENST00000568366	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.982	-	-	-	no_errors	TSC2	HGNC	ENSG00000103197	tier1	-	-	23	0	0.00	23	8	25.81
TTLL7	0	genome.wustl.edu	37	1	84335655	84335655	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	84335655	84335655	C	T	SNP	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	missense	c.2654	p.G885D	0.999	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941	tier1	-	-	46	0	0.00	72	4	5.26
TTN	0	genome.wustl.edu	37	2	179667001	179667001	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	2	179667001	179667001	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.159	p.G53	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	40	0	0.00	43	19	30.16
TUBA3D	0	genome.wustl.edu	37	2	132237645	132237645	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	2	132237645	132237645	G	A	SNP	TUBA3D	ENST00000321253	human	ensembl	74_37	+1	known	missense	c.379	p.D127N	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3D	HGNC	ENSG00000075886	tier1	-	-	93	0	0.00	50	27	35.06
TUBGCP2	0	genome.wustl.edu	37	10	135111525	135111525	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	10	135111525	135111525	C	G	SNP	TUBGCP2	ENST00000543663	human	ensembl	74_37	-1	known	missense	c.547	p.E183Q	1.000	NULL	pfam_TUBGCP,superfamily_Ocr	-	no_errors	TUBGCP2	HGNC	ENSG00000130640	tier1	-	-	64	0	0.00	25	19	43.18
TXNRD1	0	genome.wustl.edu	37	12	104742133	104742133	+	Silent	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	12	104742133	104742133	A	G	SNP	TXNRD1	ENST00000429002	human	ensembl	74_37	+1	known	silent	c.1884	p.V628	0.256	pfam_Pyr_nucl-diS_OxRdtase_dimer,superfamily_FAD/NAD-linked_Rdtase_dimer,tigrfam_Thioredoxin/glutathione_Rdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_Glutaredoxin,superfamily_FAD/NAD-linked_Rdtase_dimer,superfamily_Thioredoxin-like_fold,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD1	HGNC	ENSG00000198431	tier1	-	-	59	0	0.00	45	15	25.00
USP24	0	genome.wustl.edu	37	1	55557762	55557762	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	55557762	55557762	T	-	DEL	USP24	ENST00000407756	human	ensembl	74_37	-1	known	frame_shift_del	c.6008	p.K2003fs	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402	tier1			51	0	0.00	37	2	5.13
USP28	0	genome.wustl.edu	37	11	113672343	113672343	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	11	113672343	113672343	C	T	SNP	USP28	ENST00000003302	human	ensembl	74_37	-1	known	missense	c.2920	p.E974K	0.999	NULL	pfam_Peptidase_C19/C67,superfamily_UBA-like,pfscan_Peptidase_C19/C67	-	no_errors	USP28	HGNC	ENSG00000048028	tier1	-	-	33	0	0.00	14	20	58.82
VCL	0	genome.wustl.edu	37	10	75802874	75802874	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	10	75802874	75802874	C	T	SNP	VCL	ENST00000211998	human	ensembl	74_37	+1	known	nonsense	c.202	p.Q68*	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403	tier1	-	-	64	0	0.00	26	18	40.91
VPS13C	0	genome.wustl.edu	37	15	62207918	62207918	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	62207918	62207918	C	G	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.8359	p.E2787Q	1.000	pfam_VPSAP_dom	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	tier1	-	-	39	0	0.00	21	9	30.00
VTA1	0	genome.wustl.edu	37	6	142525187	142525187	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	142525187	142525187	A	C	SNP	VTA1	ENST00000367630	human	ensembl	74_37	+1	known	missense	c.763	p.N255H	0.979	NULL	NULL	-	no_errors	VTA1	HGNC	ENSG00000009844	tier1	-	-	61	0	0.00	46	31	40.26
VWA3A	0	genome.wustl.edu	37	16	22149768	22149768	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	22149768	22149768	C	T	SNP	VWA3A	ENST00000389398	human	ensembl	74_37	+1	known	nonsense	c.2227	p.Q743*	0.074	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267	tier1	-	-	58	0	0.00	38	19	33.33
VWA5B2	0	genome.wustl.edu	37	3	183958839	183958839	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	183958839	183958839	C	T	SNP	VWA5B2	ENST00000426955	human	ensembl	74_37	+1	known	missense	c.2906	p.P969L	0.002	NULL	NULL	-	no_errors	VWA5B2	HGNC	ENSG00000145198	tier1	-	-	27	0	0.00	29	13	30.95
WDR87	0	genome.wustl.edu	37	19	38383553	38383553	+	Silent	SNP	G	G	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	38383553	38383553	G	T	SNP	WDR87	ENST00000447313	human	ensembl	74_37	-1	known	silent	c.2790	p.V930	0.000	superfamily_ARM-type_fold	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Quinolinate_PRibosylTrfase_C,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR87	HGNC	ENSG00000171804	tier1	-	-	49	0	0.00	62	4	6.06
WDR91	0	genome.wustl.edu	37	7	134878362	134878362	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	134878362	134878362	G	A	SNP	WDR91	ENST00000354475	human	ensembl	74_37	-1	known	silent	c.1458	p.L486	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR91	HGNC	ENSG00000105875	tier1	-	-	81	0	0.00	72	21	22.58
WNT10A	0	genome.wustl.edu	37	2	219757942	219757942	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	2	219757942	219757942	C	T	SNP	WNT10A	ENST00000258411	human	ensembl	74_37	+1	known	silent	c.1203	p.F401	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt10	-	no_errors	WNT10A	HGNC	ENSG00000135925	tier1	-	-	39	0	0.00	17	20	54.05
XPNPEP2	0	genome.wustl.edu	37	X	128885744	128885744	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	128885744	128885744	G	C	SNP	XPNPEP2	ENST00000371106	human	ensembl	74_37	+1	known	missense	c.763	p.D255H	1.000	NULL	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP2	HGNC	ENSG00000122121	tier1	-	-	49	0	0.00	32	35	52.24
YBX1	0	genome.wustl.edu	37	1	43162401	43162401	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	43162401	43162401	A	G	SNP	YBX1	ENST00000321358	human	ensembl	74_37	+1	known	missense	c.443	p.Y148C	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot,prints_CSP_DNA-bd	-	no_errors	YBX1	HGNC	ENSG00000065978	tier1	-	-	65	0	0.00	51	30	37.04
YBX2	0	genome.wustl.edu	37	17	7193791	7193791	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	17	7193791	7193791	G	A	SNP	YBX2	ENST00000007699	human	ensembl	74_37	-1	known	missense	c.523	p.P175S	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot,prints_CSP_DNA-bd	-	no_errors	YBX2	HGNC	ENSG00000006047	tier1	-	-	60	0	0.00	40	28	40.58
ZBTB17	0	genome.wustl.edu	37	1	16271287	16271287	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	16271287	16271287	G	A	SNP	ZBTB17	ENST00000375733	human	ensembl	74_37	-1	known	silent	c.975	p.I325	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB17	HGNC	ENSG00000116809				9	0	0.00	13	3	18.75
ZC3H12B	0	genome.wustl.edu	37	X	64722232	64722232	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	X	64722232	64722232	T	C	SNP	ZC3H12B	ENST00000338957	human	ensembl	74_37	+1	known	missense	c.1654	p.F552L	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053	tier1	-	-	18	0	0.00	5	21	80.77
ZNF14	0	genome.wustl.edu	37	19	19823885	19823885	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	19823885	19823885	C	G	SNP	ZNF14	ENST00000344099	human	ensembl	74_37	-1	known	missense	c.205	p.E69Q	0.673	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF14	HGNC	ENSG00000105708	tier1	-	-	49	0	0.00	46	17	26.98
ZNF197	0	genome.wustl.edu	37	3	44671001	44671001	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	3	44671001	44671001	G	A	SNP	ZNF197	ENST00000344387	human	ensembl	74_37	+1	known	missense	c.355	p.E119K	0.995	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF197	HGNC	ENSG00000186448	tier1	-	-	19	0	0.00	39	16	29.09
ZNF223	0	genome.wustl.edu	37	19	44559295	44559295	+	Nonsense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	44559295	44559295	C	G	SNP	ZNF223	ENST00000591793	human	ensembl	74_37	+1	known	nonsense	c.296	p.S99*	0.001	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF223	Uniprot_gn	ENSG00000267022	tier1	-	-	52	0	0.00	36	22	37.93
ZNF292	0	genome.wustl.edu	37	6	87970002	87970002	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	6	87970002	87970002	G	A	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	missense	c.6655	p.D2219N	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	tier1	-	-	43	0	0.00	26	18	40.91
ZNF335	0	genome.wustl.edu	37	20	44579100	44579100	+	Silent	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	20	44579100	44579100	G	A	SNP	ZNF335	ENST00000322927	human	ensembl	74_37	-1	known	silent	c.3324	p.C1108	0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026	tier1	-	-	70	0	0.00	64	4	5.80
ZNF517	0	genome.wustl.edu	37	8	146032926	146032926	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	8	146032926	146032926	G	C	SNP	ZNF517	ENST00000359971	human	ensembl	74_37	+1	known	missense	c.625	p.E209Q	0.591	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF517	HGNC	ENSG00000197363	tier1	-	-	51	0	0.00	45	16	26.23
ZNF546	0	genome.wustl.edu	37	19	40521329	40521329	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	40521329	40521329	G	A	SNP	ZNF546	ENST00000347077	human	ensembl	74_37	+1	known	missense	c.2152	p.E718K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF546	HGNC	ENSG00000187187	tier1	-	-	39	0	0.00	28	16	36.36
ZNF569	0	genome.wustl.edu	37	19	37904952	37904952	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	37904952	37904952	C	G	SNP	ZNF569	ENST00000316950	human	ensembl	74_37	-1	known	missense	c.608	p.R203T	0.007	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437	tier1	-	-	55	0	0.00	29	6	17.14
ZNF597	0	genome.wustl.edu	37	16	3487023	3487023	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	16	3487023	3487023	G	A	SNP	ZNF597	ENST00000301744	human	ensembl	74_37	-1	known	missense	c.676	p.H226Y	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF597	HGNC	ENSG00000167981	tier1	-	-	45	0	0.00	12	14	53.85
ZNF695	0	genome.wustl.edu	37	1	247151124	247151124	+	Silent	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	1	247151124	247151124	C	T	SNP	ZNF695	ENST00000339986	human	ensembl	74_37	-1	known	silent	c.693	p.K231	0.496	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF695	HGNC	ENSG00000197472	tier1	-	-	37	0	0.00	26	18	40.91
ZNF710	0	genome.wustl.edu	37	15	90610643	90610643	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	15	90610643	90610643	G	A	SNP	ZNF710	ENST00000268154	human	ensembl	74_37	+1	known	missense	c.274	p.E92K	0.988	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548	tier1	-	-	77	0	0.00	55	25	31.25
ZNF728	0	genome.wustl.edu	37	19	23158499	23158499	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	23158499	23158499	C	T	SNP	ZNF728	ENST00000594710	human	ensembl	74_37	-1	novel	nonsense	c.1640	p.W547*	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF728	HGNC	ENSG00000269067	tier1	-	-	21	0	0.00	13	4	23.53
ZNF791	0	genome.wustl.edu	37	19	12739636	12739636	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	19	12739636	12739636	G	A	SNP	ZNF791	ENST00000343325	human	ensembl	74_37	+1	known	missense	c.1293	p.M431I	0.009	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF791	HGNC	ENSG00000173875	tier1	-	-	80	0	0.00	67	40	37.38
ZNF92	0	genome.wustl.edu	37	7	64863308	64863308	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49M-01A-21D-A27G-09	TCGA-LN-A49M-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c633253f-7f42-4fa0-bd73-2d24487c0acd	4145a8ee-5e08-48aa-861b-6a8a6bfe3fb2	7	64863308	64863308	C	A	SNP	ZNF92	ENST00000328747	human	ensembl	74_37	+1	known	missense	c.281	p.S94Y	0.062	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF92	HGNC	ENSG00000146757				39	0	0.00	31	2	6.06
