Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCB8	0	genome.wustl.edu	37	7	150725613	150725613	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	7	150725613	150725613	A	G	SNP	ABCB8	ENST00000297504	human	ensembl	74_37	+1	known	missense	c.11	p.H4R	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB8	HGNC	ENSG00000197150	tier1	-	-	71	0	0.00	22	5	18.52
ACAD11	0	genome.wustl.edu	37	3	132297707	132297707	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	3	132297707	132297707	C	T	SNP	ACAD11	ENST00000264990	human	ensembl	74_37	-1	known	missense	c.1707	p.M569I	1.000	superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303	tier1	-	-	47	0	0.00	51	6	10.53
ACTR10	0	genome.wustl.edu	37	14	58678109	58678109	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	14	58678109	58678109	G	T	SNP	ACTR10	ENST00000254286	human	ensembl	74_37	+1	known	missense	c.442	p.V148L	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR10	HGNC	ENSG00000131966	tier1	-	-	26	0	0.00	35	4	10.26
ANGPT4	0	genome.wustl.edu	37	20	861854	861854	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	20	861854	861854	A	G	SNP	ANGPT4	ENST00000381922	human	ensembl	74_37	-1	known	missense	c.911	p.V304A	0.998	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT4	HGNC	ENSG00000101280	tier1	-	-	44	0	0.00	24	6	20.00
ANKRD27	0	genome.wustl.edu	37	19	33134495	33134495	+	Silent	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	19	33134495	33134495	G	A	SNP	ANKRD27	ENST00000306065	human	ensembl	74_37	-1	known	silent	c.568	p.L190	0.888	NULL	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	tier1	-	-	60	0	0.00	44	16	26.67
ANO6	0	genome.wustl.edu	37	12	45695847	45695847	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	12	45695847	45695847	A	T	SNP	ANO6	ENST00000425752	human	ensembl	74_37	+1	known	missense	c.121	p.S41C	0.019	NULL	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119	tier1	-	-	63	0	0.00	54	15	21.74
ARHGAP5	0	genome.wustl.edu	37	14	32561316	32561316	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	14	32561316	32561316	G	T	SNP	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	nonsense	c.1441	p.E481*	1.000	superfamily_FF_domain,smart_FF_domain	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	tier1	rs200628183	-	49	0	0.00	37	4	9.76
ARHGAP5	0	genome.wustl.edu	37	14	32561340	32561340	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	14	32561340	32561340	G	A	SNP	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	missense	c.1465	p.E489K	1.000	pfam_FF_domain,superfamily_FF_domain,smart_FF_domain	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852	tier1	rs78337553	-	53	0	0.00	40	10	20.00
ATG7	0	genome.wustl.edu	37	3	11372893	11372893	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	3	11372893	11372893	C	A	SNP	ATG7	ENST00000354449	human	ensembl	74_37	+1	known	missense	c.758	p.A253D	1.000	tigrfam_Atg7	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_Atg7	-	no_errors	ATG7	HGNC	ENSG00000197548	tier1	-	-	77	0	0.00	38	13	25.49
ATM	0	genome.wustl.edu	37	11	108203581	108203581	+	Silent	SNP	T	T	C			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	11	108203581	108203581	T	C	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	silent	c.7881	p.Y2627	0.992	superfamily_Kinase-like_dom,superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	tier1	-	-	30	0	0.00	24	10	29.41
BBX	0	genome.wustl.edu	37	3	107492014	107492014	+	Silent	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	3	107492014	107492014	C	T	SNP	BBX	ENST00000325805	human	ensembl	74_37	+1	known	silent	c.1446	p.D482	1.000	NULL	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	BBX	HGNC	ENSG00000114439				25	0	0.00	25	2	7.41
BCAM	0	genome.wustl.edu	37	19	45322033	45322033	+	Silent	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	19	45322033	45322033	G	T	SNP	BCAM	ENST00000270233	human	ensembl	74_37	+1	known	silent	c.1230	p.S410	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	BCAM	HGNC	ENSG00000187244	tier1	-	-	42	0	0.00	53	4	7.02
BCL2	0	genome.wustl.edu	37	18	60795795	60795795	+	RNA	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	18	60795795	60795795	G	T	SNP	BCL2	ENST00000590515	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	BCL2	HGNC	ENSG00000171791	tier1	-	-	22	0	0.00	11	4	26.67
BLNK	0	genome.wustl.edu	37	10	97967644	97967644	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	10	97967644	97967644	G	A	SNP	BLNK	ENST00000224337	human	ensembl	74_37	-1	known	missense	c.758	p.T253M	0.045	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	BLNK	HGNC	ENSG00000095585	tier1	-	-	35	0	0.00	30	4	11.76
BNC2	0	genome.wustl.edu	37	9	16419544	16419544	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	9	16419544	16419544	C	G	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	missense	c.2743	p.E915Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068	tier1	-	-	36	0	0.00	24	8	25.00
C1orf173	0	genome.wustl.edu	37	1	75039106	75039106	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	75039106	75039106	A	G	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.2288	p.V763A	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	tier1	-	-	79	0	0.00	64	7	9.86
CBWD1	0	genome.wustl.edu	37	9	123687	123687	+	RNA	DEL	G	G	-			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	9	123687	123687	G	-	DEL	CBWD1	ENST00000464198	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.041	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785	tier1			12	0	0.00	14	6	30.00
CDC27	0	genome.wustl.edu	37	17	45235625	45235625	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	17	45235625	45235625	C	G	SNP	CDC27	ENST00000531206	human	ensembl	74_37	-1	known	missense	c.422	p.S141T	1.000	smart_TPR_repeat	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897	tier1	-	-	12	0	0.00	20	11	35.48
CDK11A	0	genome.wustl.edu	37	1	1647791	1647791	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	1647791	1647791	C	T	SNP	CDK11A	ENST00000404249	human	ensembl	74_37	-1	known	missense	c.482	p.R161K	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128	tier1	-	-	80	0	0.00	72	8	10.00
CHGA	0	genome.wustl.edu	37	14	93398974	93398974	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	14	93398974	93398974	G	T	SNP	CHGA	ENST00000216492	human	ensembl	74_37	+1	known	missense	c.1068	p.K356N	1.000	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGA	HGNC	ENSG00000100604	tier1	-	-	38	0	0.00	41	4	8.89
CHRD	0	genome.wustl.edu	37	3	184102443	184102443	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	3	184102443	184102443	C	A	SNP	CHRD	ENST00000204604	human	ensembl	74_37	+1	known	missense	c.1559	p.A520D	0.823	smart_CHRD,pirsf_Chordin,pfscan_CHRD	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539	tier1	-	-	20	0	0.00	16	5	23.81
COPB2	0	genome.wustl.edu	37	3	139077077	139077077	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	3	139077077	139077077	T	C	SNP	COPB2	ENST00000333188	human	ensembl	74_37	-1	known	missense	c.2590	p.I864V	0.734	pirsf_COPB2	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432	tier1	-	-	33	0	0.00	24	7	22.58
CSMD1	0	genome.wustl.edu	37	8	3200963	3200963	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	8	3200963	3200963	C	A	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	nonsense	c.3487	p.G1163*	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	tier1	-	-	65	0	0.00	29	11	27.50
DDX23	0	genome.wustl.edu	37	12	49229911	49229911	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	12	49229911	49229911	T	C	SNP	DDX23	ENST00000308025	human	ensembl	74_37	-1	known	missense	c.1375	p.I459V	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX23	HGNC	ENSG00000174243	tier1	-	-	35	0	0.00	12	8	40.00
DDX60	0	genome.wustl.edu	37	4	169138093	169138093	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	4	169138093	169138093	G	C	SNP	DDX60	ENST00000393743	human	ensembl	74_37	-1	known	missense	c.5130	p.N1710K	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628	tier1	-	-	74	0	0.00	66	11	14.29
DHRS12	0	genome.wustl.edu	37	13	52364150	52364150	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	13	52364150	52364150	G	T	SNP	DHRS12	ENST00000444610	human	ensembl	74_37	-1	known	missense	c.445	p.L149M	0.015	pfam_DH_sc/Rdtase_SDR,pfam_Epimerase_deHydtase,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_Epimerase_deHydtase,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	DHRS12	HGNC	ENSG00000102796				43	0	0.00	29	2	6.45
DMTN	0	genome.wustl.edu	37	8	21938645	21938645	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	8	21938645	21938645	G	T	SNP	DMTN	ENST00000265800	human	ensembl	74_37	+1	known	missense	c.1045	p.V349L	1.000	superfamily_Villin_headpiece,pfscan_Villin_headpiece	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	-	no_errors	DMTN	HGNC	ENSG00000158856	tier1	-	-	32	0	0.00	32	5	13.51
DNAH8	0	genome.wustl.edu	37	6	38874095	38874095	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	6	38874095	38874095	G	C	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.8609	p.G2870A	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	tier1	-	-	35	0	0.00	17	8	32.00
DPT	0	genome.wustl.edu	37	1	168698182	168698182	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	168698182	168698182	G	T	SNP	DPT	ENST00000367817	human	ensembl	74_37	-1	known	nonsense	c.231	p.C77*	1.000	NULL	NULL	-	no_errors	DPT	HGNC	ENSG00000143196				45	0	0.00	40	3	6.98
ENSG00000224363	0	genome.wustl.edu	37	1	144090788	144090788	+	RNA	SNP	C	C	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	144090788	144090788	C	A	SNP	ENSG00000224363	ENST00000441760	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.850	-	-	-	no_errors	RP11-289H16.1	Clone_based_vega_gene	ENSG00000224363	tier1	-	-	33	0	0.00	28	4	12.50
ENSG00000227230	0	genome.wustl.edu	37	1	243303566	243303566	+	RNA	SNP	A	A	C			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	243303566	243303566	A	C	SNP	ENSG00000227230	ENST00000439562	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-261C10.5	Clone_based_vega_gene	ENSG00000227230	tier1	-	-	30	0	0.00	25	6	19.35
ERCC2	0	genome.wustl.edu	37	19	45860787	45860787	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	19	45860787	45860787	G	A	SNP	ERCC2	ENST00000391945	human	ensembl	74_37	-1	known	missense	c.1322	p.S441L	1.000	superfamily_P-loop_NTPase,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DUF1227,pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,prints_XPGD_DNA_repair,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	ERCC2	HGNC	ENSG00000104884	tier1	-	-	44	0	0.00	23	9	28.12
ETFDH	0	genome.wustl.edu	37	4	159624578	159624579	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	4	159624578	159624579	-	T	INS	ETFDH	ENST00000511912	human	ensembl	74_37	+1	known	frame_shift_ins	c.1120_1121	p.P375fs	1.000:1.000	NULL	pfam_ETFD_OxRdtase,pfam_FAD_bind_dom,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Pyridine_nuc-diS_OxRdtase_2	-	no_errors	ETFDH	HGNC	ENSG00000171503	tier1			67	0	0.00	41	10	19.61
FAM149A	0	genome.wustl.edu	37	4	187078796	187078796	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	4	187078796	187078796	G	A	SNP	FAM149A	ENST00000356371	human	ensembl	74_37	+1	known	missense	c.1525	p.D509N	0.006	NULL	pfam_DUF3719	-	no_errors	FAM149A	HGNC	ENSG00000109794	tier1	-	-	41	0	0.00	21	14	40.00
FANCI	0	genome.wustl.edu	37	15	89804864	89804864	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	15	89804864	89804864	A	G	SNP	FANCI	ENST00000310775	human	ensembl	74_37	+1	known	missense	c.337	p.I113V	0.980	NULL	NULL	-	no_errors	FANCI	HGNC	ENSG00000140525	tier1	-	-	34	0	0.00	28	7	20.00
FBXL16	0	genome.wustl.edu	37	16	747209	747209	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	16	747209	747209	C	T	SNP	FBXL16	ENST00000324361	human	ensembl	74_37	-1	known	missense	c.197	p.R66Q	0.995	NULL	superfamily_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL16	HGNC	ENSG00000127585				8	0	0.00	2	2	50.00
FBXO11	0	genome.wustl.edu	37	2	48040404	48040405	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	2	48040404	48040405	-	TC	INS	FBXO11	ENST00000403359	human	ensembl	74_37	-1	known	frame_shift_ins	c.2196_2195	p.D732fs	1.000:1.000	superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	pfam_Znf_N-recognin,pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081	tier1			29	0	0.00	26	4	13.33
FGFR3	0	genome.wustl.edu	37	4	1807139	1807139	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	4	1807139	1807139	G	T	SNP	FGFR3	ENST00000340107	human	ensembl	74_37	+1	known	missense	c.1476	p.E492D	1.000	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR3	HGNC	ENSG00000068078				34	0	0.00	21	4	16.00
FNDC9	0	genome.wustl.edu	37	5	156770149	156770149	+	Silent	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	5	156770149	156770149	G	A	SNP	FNDC9	ENST00000312349	human	ensembl	74_37	-1	known	silent	c.396	p.C132	0.990	NULL	superfamily_Fibronectin_type3	-	no_errors	FNDC9	HGNC	ENSG00000172568	tier1	-	-	43	0	0.00	26	6	18.75
FTO	0	genome.wustl.edu	37	16	53860093	53860093	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	16	53860093	53860093	G	T	SNP	FTO	ENST00000471389	human	ensembl	74_37	+1	known	missense	c.441	p.Q147H	0.220	NULL	NULL	-	no_errors	FTO	HGNC	ENSG00000140718	tier1	-	-	27	0	0.00	16	11	40.74
GPBP1L1	0	genome.wustl.edu	37	1	46096321	46096321	+	RNA	SNP	T	T	C			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	46096321	46096321	T	C	SNP	GPBP1L1	ENST00000487436	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	GPBP1L1	HGNC	ENSG00000159592	tier1	-	-	50	0	0.00	41	15	26.79
GRM8	0	genome.wustl.edu	37	7	126173450	126173450	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	7	126173450	126173450	G	T	SNP	GRM8	ENST00000339582	human	ensembl	74_37	-1	known	missense	c.1986	p.S662R	1.000	pfam_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM8	HGNC	ENSG00000179603				49	0	0.00	28	2	6.67
GYLTL1B	0	genome.wustl.edu	37	11	45949867	45949867	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	11	45949867	45949867	C	A	SNP	GYLTL1B	ENST00000325468	human	ensembl	74_37	+1	known	missense	c.1894	p.R632S	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	GYLTL1B	HGNC	ENSG00000165905				43	0	0.00	25	2	7.41
HELZ2	0	genome.wustl.edu	37	20	62203295	62203295	+	RNA	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	20	62203295	62203295	G	A	SNP	HELZ2	ENST00000479540	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.747	-	-	-	no_errors	HELZ2	HGNC	ENSG00000130589	tier1	rs75418499	-	26	0	0.00	15	4	21.05
HMGB1P5	0	genome.wustl.edu	37	3	22424366	22424366	+	RNA	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	3	22424366	22424366	G	T	SNP	HMGB1P5	ENST00000451497	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGB1P5	HGNC	ENSG00000132967				10	0	0.00	0	3	100.00
HOXA3	0	genome.wustl.edu	37	7	27148113	27148113	+	Silent	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	7	27148113	27148113	C	T	SNP	HOXA3	ENST00000317201	human	ensembl	74_37	-1	known	silent	c.753	p.K251	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA3	HGNC	ENSG00000105997	tier1	-	-	53	0	0.00	39	24	38.10
HS6ST1	0	genome.wustl.edu	37	2	129075877	129075877	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	2	129075877	129075877	G	T	SNP	HS6ST1	ENST00000259241	human	ensembl	74_37	-1	known	missense	c.261	p.D87E	1.000	pfam_Sulfotransferase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST1	HGNC	ENSG00000136720	tier1	rs200979099	-	10	0	0.00	14	9	39.13
IDE	0	genome.wustl.edu	37	10	94291633	94291633	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	10	94291633	94291633	C	A	SNP	IDE	ENST00000265986	human	ensembl	74_37	-1	known	missense	c.533	p.C178F	1.000	pfam_Pept_M16_N,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	IDE	HGNC	ENSG00000119912	tier1	-	-	28	0	0.00	25	4	13.79
IRX6	0	genome.wustl.edu	37	16	55361662	55361662	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	16	55361662	55361662	T	A	SNP	IRX6	ENST00000290552	human	ensembl	74_37	+1	known	missense	c.578	p.V193E	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX6	HGNC	ENSG00000159387	tier1	-	-	61	0	0.00	47	11	18.64
KIAA1024	0	genome.wustl.edu	37	15	79750680	79750680	+	Nonsense_Mutation	SNP	A	A	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	15	79750680	79750680	A	T	SNP	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	nonsense	c.2191	p.R731*	0.121	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330	tier1	-	-	25	0	0.00	29	10	25.64
LENG8	0	genome.wustl.edu	37	19	54968055	54968055	+	Silent	SNP	G	G	C			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	19	54968055	54968055	G	C	SNP	LENG8	ENST00000326764	human	ensembl	74_37	+1	known	silent	c.1686	p.L562	1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	LENG8	HGNC	ENSG00000167615	tier1	-	-	49	0	0.00	25	11	30.56
LGR6	0	genome.wustl.edu	37	1	202278273	202278273	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	202278273	202278273	G	T	SNP	LGR6	ENST00000367278	human	ensembl	74_37	+1	known	missense	c.1375	p.A459S	0.985	NULL	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067	tier1	-	-	59	0	0.00	48	4	7.69
LIPH	0	genome.wustl.edu	37	3	185252682	185252682	+	Silent	SNP	G	G	C			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	3	185252682	185252682	G	C	SNP	LIPH	ENST00000296252	human	ensembl	74_37	-1	known	silent	c.288	p.L96	0.059	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	LIPH	HGNC	ENSG00000163898	tier1	-	-	41	0	0.00	56	4	6.67
LRP6	0	genome.wustl.edu	37	12	12311822	12311822	+	Frame_Shift_Del	DEL	C	C	-			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	12	12311822	12311822	C	-	DEL	LRP6	ENST00000261349	human	ensembl	74_37	-1	known	frame_shift_del	c.2732	p.G911fs	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_EG-like_dom	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018	tier1			31	0	0.00	34	11	24.44
LRRC32	0	genome.wustl.edu	37	11	76370908	76370908	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	11	76370908	76370908	C	T	SNP	LRRC32	ENST00000260061	human	ensembl	74_37	-1	known	missense	c.1729	p.G577S	0.974	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC32	HGNC	ENSG00000137507	tier1	-	-	34	0	0.00	42	18	30.00
MATN2	0	genome.wustl.edu	37	8	99039880	99039880	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	8	99039880	99039880	T	C	SNP	MATN2	ENST00000254898	human	ensembl	74_37	+1	known	missense	c.2179	p.Y727H	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561	tier1	-	-	20	0	0.00	35	14	28.57
MIR519A1	0	genome.wustl.edu	37	19	54255702	54255702	+	RNA	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	19	54255702	54255702	G	A	SNP	MIR519A1	ENST00000385257	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	MIR519A1	HGNC	ENSG00000207992	tier1	-	-	80	0	0.00	54	14	20.59
MKI67	0	genome.wustl.edu	37	10	129908757	129908757	+	Silent	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	10	129908757	129908757	C	T	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	silent	c.2301	p.P767	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				25	0	0.00	24	2	7.69
MRAS	0	genome.wustl.edu	37	3	138116171	138116171	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	3	138116171	138116171	G	A	SNP	MRAS	ENST00000289104	human	ensembl	74_37	+1	known	missense	c.199	p.D67N	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_EF_GTP-bd_dom,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_EF_GTP-bd_dom,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	MRAS	HGNC	ENSG00000158186	tier1	-	-	34	0	0.00	41	14	25.45
MT-CO1	0	genome.wustl.edu	37	MT	6734	6734	+	Silent	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	MT	6734	6734	G	A	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	silent	c.831	p.M277	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804	tier1	rs41413745	-	15	0	0.00	2	6	75.00
MTR	0	genome.wustl.edu	37	1	237057959	237057959	+	RNA	DEL	T	T	-			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	237057959	237057959	T	-	DEL	MTR	ENST00000470570	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTR	HGNC	ENSG00000116984	tier1			9	0	0.00	5	2	28.57
NAIF1	0	genome.wustl.edu	37	9	130826154	130826154	+	Silent	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	9	130826154	130826154	C	T	SNP	NAIF1	ENST00000373078	human	ensembl	74_37	-1	known	silent	c.537	p.T179	0.005	NULL	NULL	-	no_errors	NAIF1	HGNC	ENSG00000171169	tier1	-	-	25	0	0.00	14	13	48.15
NLRP1	0	genome.wustl.edu	37	17	5462637	5462637	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	17	5462637	5462637	G	T	SNP	NLRP1	ENST00000572272	human	ensembl	74_37	-1	known	missense	c.1379	p.T460N	0.013	pfscan_NACHT_NTPase	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592	tier1	-	-	37	0	0.00	29	9	23.68
NOTCH1	0	genome.wustl.edu	37	9	139402553	139402553	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	9	139402553	139402553	A	T	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	missense	c.3364	p.C1122S	1.000	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_Notch,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	tier1	-	-	52	0	0.00	16	35	68.63
NTM	0	genome.wustl.edu	37	11	132206566	132206566	+	RNA	DEL	T	T	-			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	11	132206566	132206566	T	-	DEL	NTM	ENST00000474900	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.131	-	-	-	no_errors	NTM	HGNC	ENSG00000182667	tier1			11	0	0.00	12	7	36.84
OR10G4	0	genome.wustl.edu	37	11	123886307	123886307	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	11	123886307	123886307	C	T	SNP	OR10G4	ENST00000320891	human	ensembl	74_37	+1	known	missense	c.26	p.A9V	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737				31	0	0.00	24	4	14.29
OR4Q3	0	genome.wustl.edu	37	14	20215877	20215877	+	Silent	SNP	A	A	G			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	14	20215877	20215877	A	G	SNP	OR4Q3	ENST00000331723	human	ensembl	74_37	+1	known	silent	c.291	p.G97	0.612	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4Q3	HGNC	ENSG00000182652	tier1	-	-	149	0	0.00	130	13	9.09
PCDHGA8	0	genome.wustl.edu	37	5	140773296	140773296	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	5	140773296	140773296	A	G	SNP	PCDHGA8	ENST00000398604	human	ensembl	74_37	+1	known	missense	c.916	p.S306G	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767				24	0	0.00	6	2	25.00
PML	0	genome.wustl.edu	37	15	74336717	74336717	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	15	74336717	74336717	A	G	SNP	PML	ENST00000268058	human	ensembl	74_37	+1	known	missense	c.2017	p.I673V	0.783	NULL	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464	tier1	-	-	20	0	0.00	25	8	24.24
POTEH	0	genome.wustl.edu	37	22	16287537	16287537	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	22	16287537	16287537	C	T	SNP	POTEH	ENST00000343518	human	ensembl	74_37	-1	known	missense	c.349	p.V117M	0.006	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEH	HGNC	ENSG00000198062	tier1	-	-	191	0	0.00	185	31	14.29
PRPF3	0	genome.wustl.edu	37	1	150307544	150307544	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	150307544	150307544	G	T	SNP	PRPF3	ENST00000324862	human	ensembl	74_37	+1	known	missense	c.867	p.K289N	1.000	NULL	pfam_Pre-mRNA_splic_Prp3,pfam_DUF1115,pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	PRPF3	HGNC	ENSG00000117360				44	0	0.00	39	4	9.30
PSMB7	0	genome.wustl.edu	37	9	127174691	127174691	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	9	127174691	127174691	G	T	SNP	PSMB7	ENST00000259457	human	ensembl	74_37	-1	known	missense	c.335	p.S112Y	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_bsu_C,prints_Pept_T1A_subB	-	no_errors	PSMB7	HGNC	ENSG00000136930	tier1	-	-	45	0	0.00	50	4	7.41
RFX7	0	genome.wustl.edu	37	15	56435084	56435085	+	Frame_Shift_Ins	INS	-	-	TG			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	15	56435084	56435085	-	TG	INS	RFX7	ENST00000423270	human	ensembl	74_37	-1	known	frame_shift_ins	c.293_292	p.M98fs	1.000:1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827	tier1			44	0	0.00	30	14	31.82
S100A12	0	genome.wustl.edu	37	1	153346937	153346937	+	Silent	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	153346937	153346937	G	T	SNP	S100A12	ENST00000368737	human	ensembl	74_37	-1	known	silent	c.132	p.T44	0.000	pfam_S100_Ca-bd_sub	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	S100A12	HGNC	ENSG00000163221	tier1	-	-	43	0	0.00	37	4	9.76
SATB1	0	genome.wustl.edu	37	3	18436270	18436270	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	3	18436270	18436270	C	T	SNP	SATB1	ENST00000417717	human	ensembl	74_37	-1	known	missense	c.890	p.R297Q	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568	tier1	-	-	81	0	0.00	37	11	22.92
SCN1A	0	genome.wustl.edu	37	2	166872187	166872187	+	Silent	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	2	166872187	166872187	G	T	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	silent	c.3480	p.G1160	0.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				34	0	0.00	63	4	5.97
SEC16B	0	genome.wustl.edu	37	1	177902668	177902668	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	177902668	177902668	C	T	SNP	SEC16B	ENST00000308284	human	ensembl	74_37	-1	known	missense	c.2675	p.R892Q	0.000	NULL	NULL	-	no_errors	SEC16B	HGNC	ENSG00000120341				41	0	0.00	37	2	5.13
SEC24B	0	genome.wustl.edu	37	4	110427592	110427592	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	4	110427592	110427592	A	G	SNP	SEC24B	ENST00000265175	human	ensembl	74_37	+1	known	missense	c.1597	p.I533V	0.991	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802	tier1	-	-	23	0	0.00	21	7	25.00
SLC4A3	0	genome.wustl.edu	37	2	220500481	220500481	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	2	220500481	220500481	C	T	SNP	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	missense	c.2140	p.R714W	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				34	0	0.00	28	2	6.67
SLFN12L	0	genome.wustl.edu	37	17	33806863	33806863	+	Silent	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	17	33806863	33806863	G	A	SNP	SLFN12L	ENST00000449046	human	ensembl	74_37	-1	known	silent	c.459	p.H153	0.000	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12L	HGNC	ENSG00000205045				59	0	0.00	51	3	5.56
SNTG2	0	genome.wustl.edu	37	2	1204912	1204912	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	2	1204912	1204912	T	A	SNP	SNTG2	ENST00000308624	human	ensembl	74_37	+1	known	missense	c.715	p.L239I	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SNTG2	HGNC	ENSG00000172554	tier1	-	-	38	0	0.00	26	12	31.58
SPATA32	0	genome.wustl.edu	37	17	43334552	43334552	+	Silent	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	17	43334552	43334552	G	A	SNP	SPATA32	ENST00000331780	human	ensembl	74_37	-1	known	silent	c.36	p.C12	0.028	NULL	NULL	-	no_errors	SPATA32	HGNC	ENSG00000184361				31	0	0.00	32	2	5.88
SPTA1	0	genome.wustl.edu	37	1	158636283	158636283	+	Silent	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	158636283	158636283	G	T	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	silent	c.2043	p.T681	0.144	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				14	0	0.00	14	2	12.50
STAU1	0	genome.wustl.edu	37	20	47768220	47768220	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	20	47768220	47768220	G	T	SNP	STAU1	ENST00000371856	human	ensembl	74_37	-1	known	missense	c.409	p.Q137K	1.000	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU1	HGNC	ENSG00000124214	tier1	-	-	44	0	0.00	48	4	7.69
STRAP	0	genome.wustl.edu	37	12	16043540	16043540	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	12	16043540	16043540	T	G	SNP	STRAP	ENST00000025399	human	ensembl	74_37	+1	known	missense	c.379	p.Y127D	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRAP	HGNC	ENSG00000023734	tier1	-	-	52	0	0.00	39	13	25.00
STXBP5	0	genome.wustl.edu	37	6	147632620	147632620	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	6	147632620	147632620	C	A	SNP	STXBP5	ENST00000321680	human	ensembl	74_37	+1	known	missense	c.1102	p.L368I	1.000	pfam_LLGL2,superfamily_WD40_repeat_dom,prints_Lethal2_giant	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506	tier1	-	-	37	0	0.00	32	5	13.51
TAF4B	0	genome.wustl.edu	37	18	23873435	23873435	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	18	23873435	23873435	C	T	SNP	TAF4B	ENST00000269142	human	ensembl	74_37	+1	known	missense	c.1772	p.S591L	1.000	NULL	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4B	HGNC	ENSG00000141384				27	0	0.00	42	3	6.67
TEX38	0	genome.wustl.edu	37	1	47138746	47138746	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	47138746	47138746	C	G	SNP	TEX38	ENST00000569393	human	ensembl	74_37	+1	known	missense	c.401	p.A134G	0.956	NULL	NULL	-	no_errors	TEX38	HGNC	ENSG00000186118	tier1	-	-	40	0	0.00	21	6	22.22
TFCP2	0	genome.wustl.edu	37	12	51489798	51489798	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	12	51489798	51489798	G	T	SNP	TFCP2	ENST00000257915	human	ensembl	74_37	-1	known	missense	c.1445	p.A482E	1.000	NULL	pfam_CP2,superfamily_SAM/pointed	-	no_errors	TFCP2	HGNC	ENSG00000135457				22	0	0.00	32	2	5.88
TGFBR2	0	genome.wustl.edu	37	3	30691947	30691947	+	Nonsense_Mutation	SNP	C	C	G			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	3	30691947	30691947	C	G	SNP	TGFBR2	ENST00000359013	human	ensembl	74_37	+1	known	nonsense	c.524	p.S175*	0.931	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513	tier1	-	-	40	0	0.00	22	5	18.52
THSD7A	0	genome.wustl.edu	37	7	11486945	11486945	+	Silent	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	7	11486945	11486945	C	T	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	silent	c.2712	p.Q904	1.000	superfamily_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	tier1	-	-	39	0	0.00	35	14	28.57
TP53	0	genome.wustl.edu	37	17	7577527	7577527	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	17	7577527	7577527	G	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.754	p.L252fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			56	0	0.00	32	21	39.62
TP53	0	genome.wustl.edu	37	17	7577528	7577528	+	Silent	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	17	7577528	7577528	G	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	silent	c.753	p.I251	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	56	0	0.00	30	22	42.31
TTC40	0	genome.wustl.edu	37	10	134755135	134755135	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	10	134755135	134755135	C	A	SNP	TTC40	ENST00000368582	human	ensembl	74_37	-1	known	missense	c.266	p.C89F	1.000	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811	tier1	-	-	37	0	0.00	25	8	24.24
TTN	0	genome.wustl.edu	37	2	179571596	179571596	+	Silent	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	2	179571596	179571596	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.25395	p.V8465	0.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	32	0	0.00	28	6	17.65
UBE2T	0	genome.wustl.edu	37	1	202302447	202302447	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	202302447	202302447	G	T	SNP	UBE2T	ENST00000367274	human	ensembl	74_37	-1	known	missense	c.302	p.S101Y	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2T	HGNC	ENSG00000077152	tier1	-	-	57	0	0.00	34	9	20.93
UNC13D	0	genome.wustl.edu	37	17	73827330	73827330	+	Silent	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	17	73827330	73827330	G	A	SNP	UNC13D	ENST00000412096	human	ensembl	74_37	-1	known	silent	c.2547	p.A849	0.985	pfam_Munc13_subgr_dom-2	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	UNC13D	HGNC	ENSG00000092929	tier1	-	-	34	0	0.00	27	19	41.30
USP27X	0	genome.wustl.edu	37	X	49645918	49645918	+	Silent	SNP	G	G	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	X	49645918	49645918	G	A	SNP	USP27X	ENST00000508866	human	ensembl	74_37	+1	known	silent	c.1008	p.T336	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP27X	HGNC	ENSG00000242013	tier1	-	-	30	0	0.00	9	9	50.00
USP48	0	genome.wustl.edu	37	1	22033385	22033386	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	1	22033385	22033386	-	A	INS	USP48	ENST00000529637	human	ensembl	74_37	-1	novel	frame_shift_ins	c.1976_1975	p.S659fs	0.000:0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686	tier1			14	0	0.00	31	5	13.89
VPS53	0	genome.wustl.edu	37	17	560766	560766	+	RNA	SNP	G	G	C			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	17	560766	560766	G	C	SNP	VPS53	ENST00000575207	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	VPS53	HGNC	ENSG00000141252	tier1	-	-	30	0	0.00	6	11	64.71
WDR24	0	genome.wustl.edu	37	16	740386	740386	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	16	740386	740386	C	T	SNP	WDR24	ENST00000248142	human	ensembl	74_37	-1	known	missense	c.59	p.R20Q	0.026	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR24	HGNC	ENSG00000127580	tier1	-	-	68	0	0.00	42	14	25.00
ZBED1	0	genome.wustl.edu	37	X	2408163	2408165	+	In_Frame_Del	DEL	TGT	TGT	-			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	X	2408163	2408165	TGT	-	DEL	ZBED1	ENST00000381218	human	ensembl	74_37	-1	known	in_frame_del	c.598_596	p.DM199in_frame_delV	0.584:0.703:0.959	superfamily_RNaseH-like_dom	pfam_HATC_dom_C,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717	tier1			63	0	0.00	47	16	25.40
ZBED1	0	genome.wustl.edu	37	X	2408167	2408169	+	In_Frame_Del	DEL	GGT	GGT	-			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	GGT	GGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	X	2408167	2408169	GGT	-	DEL	ZBED1	ENST00000381218	human	ensembl	74_37	-1	known	in_frame_del	c.594_592	p.T198in_frame_del	0.041:0.747:0.750	superfamily_RNaseH-like_dom	pfam_HATC_dom_C,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717	tier1			63	0	0.00	52	16	23.53
ZFHX4	0	genome.wustl.edu	37	8	77766126	77766126	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	8	77766126	77766126	G	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.6969	p.R2323S	0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				24	0	0.00	29	2	6.45
ZNF704	0	genome.wustl.edu	37	8	81550824	81550825	+	RNA	INS	-	-	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	8	81550824	81550825	-	A	INS	ZNF704	ENST00000517379	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ZNF704	HGNC	ENSG00000164684	tier1			15	0	0.00	23	2	8.00
ZNF704	0	genome.wustl.edu	37	8	81550825	81550825	+	RNA	DEL	A	A	-			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	8	81550825	81550825	A	-	DEL	ZNF704	ENST00000517379	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF704	HGNC	ENSG00000164684	tier1			15	0	0.00	19	6	24.00
ZNF91	0	genome.wustl.edu	37	19	23525017	23525017	+	RNA	SNP	C	C	A			TCGA-LN-A49N-01A-11D-A247-09	TCGA-LN-A49N-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25b2c389-9567-4d9d-bd13-37ec79e35b20	6ebf21f8-3c1f-41d6-8ef0-e7f6e97a45e4	19	23525017	23525017	C	A	SNP	ZNF91	ENST00000599281	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.064	-	-	-	no_errors	ZNF91	HGNC	ENSG00000167232	tier1	-	-	36	0	0.00	16	6	27.27
