Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCC5	0	genome.wustl.edu	37	3	183669325	183669325	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	3	183669325	183669325	C	T	SNP	ABCC5	ENST00000334444	human	ensembl	74_37	-1	known	missense	c.2848	p.E950K	0.996	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC5	HGNC	ENSG00000114770	tier1	-	-	40	0	0.00	41	9	18.00
AHNAK	0	genome.wustl.edu	37	11	62300523	62300523	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	11	62300523	62300523	G	A	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.1366	p.P456S	0.023	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	tier1	-	-	25	0	0.00	10	26	72.22
ANKRD36C	0	genome.wustl.edu	37	2	96643871	96643871	+	Silent	SNP	T	T	C			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	96643871	96643871	T	C	SNP	ANKRD36C	ENST00000456556	human	ensembl	74_37	-1	known	silent	c.798	p.P266	0.222	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36C	HGNC	ENSG00000174501				51	0	0.00	68	4	5.56
AOC2	0	genome.wustl.edu	37	17	40997982	40997982	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	17	40997982	40997982	G	T	SNP	AOC2	ENST00000253799	human	ensembl	74_37	+1	known	missense	c.1339	p.G447C	1.000	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C,prints_Cu_amine_oxidase	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N3,pfam_Cu_amine_oxidase_N2,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC2	HGNC	ENSG00000131480	tier1	-	-	50	0	0.00	60	4	6.25
AP1G1	0	genome.wustl.edu	37	16	71773198	71773198	+	Silent	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	16	71773198	71773198	G	T	SNP	AP1G1	ENST00000433195	human	ensembl	74_37	-1	known	silent	c.2115	p.S705	1.000	pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G1	HGNC	ENSG00000166747				24	0	0.00	34	3	8.11
ARID1B	0	genome.wustl.edu	37	6	157469897	157469897	+	Silent	SNP	A	A	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	6	157469897	157469897	A	T	SNP	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	silent	c.2652	p.G884	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	tier1	-	-	62	0	0.00	56	24	30.00
ARMCX5	0	genome.wustl.edu	37	X	101858368	101858368	+	Nonsense_Mutation	SNP	T	T	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	X	101858368	101858368	T	G	SNP	ARMCX5	ENST00000246174	human	ensembl	74_37	+1	known	nonsense	c.1299	p.Y433*	0.051	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMCX5	HGNC	ENSG00000125962	tier1	-	-	43	0	0.00	45	78	63.41
ASXL1	0	genome.wustl.edu	37	20	31022250	31022250	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	20	31022250	31022250	A	T	SNP	ASXL1	ENST00000375687	human	ensembl	74_37	+1	known	missense	c.1735	p.I579F	1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	tier1	-	-	43	0	0.00	67	11	14.10
ATP2C1	0	genome.wustl.edu	37	3	130698257	130698257	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	3	130698257	130698257	G	T	SNP	ATP2C1	ENST00000393221	human	ensembl	74_37	+1	known	missense	c.1837	p.A613S	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C1	HGNC	ENSG00000017260	tier1	-	-	50	0	0.00	67	4	5.56
C1orf56	0	genome.wustl.edu	37	1	151022913	151022913	+	Splice_Site	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	151022913	151022913	G	T	SNP	C1orf56	ENST00000368926	human	ensembl	74_37	+1	known	splice_site	c.1006-1	e2-1	0.932	-	-	-	no_errors	C1orf56	HGNC	ENSG00000143443				66	0	0.00	53	3	5.36
C22orf34	0	genome.wustl.edu	37	22	49834744	49834744	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	22	49834744	49834744	C	T	SNP	C22orf34	ENST00000414287	human	ensembl	74_37	-1	known	missense	c.173	p.R58Q	0.002	NULL	NULL	-	no_errors	C22orf34	HGNC	ENSG00000188511	tier1	-	-	44	0	0.00	77	17	18.09
CAD	0	genome.wustl.edu	37	2	27445849	27445849	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	27445849	27445849	C	G	SNP	CAD	ENST00000264705	human	ensembl	74_37	+1	known	missense	c.753	p.I251M	1.000	pfam_GATASE,tigrfam_CarbamoylP_synth_ssu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf	-	no_errors	CAD	HGNC	ENSG00000084774	tier1	-	-	87	0	0.00	75	23	23.47
CENPF	0	genome.wustl.edu	37	1	214794199	214794199	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	214794199	214794199	T	G	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.775	p.L259V	0.000	pfam_Centromere_CenpF_N	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	tier1	-	-	25	0	0.00	28	10	26.32
CNTN2	0	genome.wustl.edu	37	1	205034965	205034965	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	205034965	205034965	G	T	SNP	CNTN2	ENST00000331830	human	ensembl	74_37	+1	known	missense	c.1744	p.G582W	0.985	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN2	HGNC	ENSG00000184144				55	0	0.00	76	4	5.00
CSMD3	0	genome.wustl.edu	37	8	113267492	113267492	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	8	113267492	113267492	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.10027	p.H3343Y	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	tier1	-	-	50	0	0.00	55	15	21.43
CSNK1G2-AS1	0	genome.wustl.edu	37	19	1954417	1954417	+	RNA	DEL	A	A	-			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	19	1954417	1954417	A	-	DEL	CSNK1G2-AS1	ENST00000314315	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	CSNK1G2-AS1	HGNC	ENSG00000180846	tier1			13	0	0.00	1	2	66.67
CTNNA3	0	genome.wustl.edu	37	10	67680368	67680368	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	10	67680368	67680368	C	T	SNP	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	missense	c.2408	p.S803N	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230	tier1	-	-	53	0	0.00	48	9	15.79
DGKI	0	genome.wustl.edu	37	7	137206686	137206686	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	7	137206686	137206686	C	G	SNP	DGKI	ENST00000288490	human	ensembl	74_37	-1	known	missense	c.2174	p.R725T	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680	tier1	-	-	41	0	0.00	53	11	17.19
DIAPH2	0	genome.wustl.edu	37	X	96212977	96212977	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	X	96212977	96212977	G	T	SNP	DIAPH2	ENST00000324765	human	ensembl	74_37	+1	known	missense	c.1765	p.G589W	0.000	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH2	HGNC	ENSG00000147202				31	0	0.00	58	4	6.45
DMTF1	0	genome.wustl.edu	37	7	86815159	86815162	+	Frame_Shift_Del	DEL	ATGT	ATGT	-			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	ATGT	ATGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	7	86815159	86815162	ATGT	-	DEL	DMTF1	ENST00000331242	human	ensembl	74_37	+1	known	frame_shift_del	c.1064_1067	p.D355fs	1.000:0.998:1.000:1.000	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	DMTF1	HGNC	ENSG00000135164	tier1			108	0	0.00	112	47	29.56
DNAH7	0	genome.wustl.edu	37	2	196729159	196729159	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	196729159	196729159	G	C	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.7220	p.S2407C	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997	tier1	-	-	36	0	0.00	42	15	26.32
DOCK2	0	genome.wustl.edu	37	5	169507274	169507274	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	5	169507274	169507274	G	A	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.5274	p.M1758I	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	tier1	-	-	59	0	0.00	78	8	9.30
DPF3	0	genome.wustl.edu	37	14	73137344	73137345	+	RNA	DEL	TC	TC	-			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	14	73137344	73137345	TC	-	DEL	DPF3	ENST00000557704	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.959:0.966	-	-	-	no_errors	DPF3	HGNC	ENSG00000205683	tier1			43	0	0.00	46	7	13.21
EFCAB1	0	genome.wustl.edu	37	8	49643126	49643126	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	8	49643126	49643126	G	A	SNP	EFCAB1	ENST00000262103	human	ensembl	74_37	-1	known	nonsense	c.292	p.R98*	1.000	pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	EFCAB1	HGNC	ENSG00000034239				23	0	0.00	38	4	9.52
EML6	0	genome.wustl.edu	37	2	55091009	55091009	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	55091009	55091009	A	G	SNP	EML6	ENST00000356458	human	ensembl	74_37	+1	novel	missense	c.1915	p.I639V	1.000	NULL	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML6	HGNC	ENSG00000214595	tier1	-	-	38	0	0.00	63	9	12.50
ENOX1	0	genome.wustl.edu	37	13	43986175	43986175	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	13	43986175	43986175	C	T	SNP	ENOX1	ENST00000261488	human	ensembl	74_37	-1	known	missense	c.85	p.G29R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658	tier1	-	-	70	0	0.00	79	16	16.84
ENSG00000169203	0	genome.wustl.edu	37	16	29496887	29496887	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	16	29496887	29496887	G	T	SNP	ENSG00000169203	ENST00000354563	human	ensembl	74_37	-1	known	missense	c.388	p.P130T	0.002	NULL	NULL	-	no_errors	RP11-231C14.4	Clone_based_vega_gene	ENSG00000169203	tier1	-	-	13	0	0.00	10	9	47.37
ENSG00000188971	0	genome.wustl.edu	37	2	69691326	69691327	+	RNA	INS	-	-	AAC			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	69691326	69691327	-	AAC	INS	ENSG00000188971	ENST00000606389	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-427H3.3	Clone_based_vega_gene	ENSG00000188971	tier1			8	0	0.00	14	5	26.32
ENSG00000212857	0	genome.wustl.edu	37	GL000212.1	65796	65796	+	Silent	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	GL000212.1	65796	65796	G	A	SNP	ENSG00000212857	ENST00000391545	human	ensembl	74_37	+1	known	silent	c.1545	p.S515	NULL	NULL	NULL	-	no_errors	AL356585.1	Clone_based_ensembl_gene	ENSG00000212857	tier1	-	-	94	0	0.00	209	20	8.73
ENSG00000212857	0	genome.wustl.edu	37	GL000212.1	65797	65797	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	GL000212.1	65797	65797	C	G	SNP	ENSG00000212857	ENST00000391545	human	ensembl	74_37	+1	known	missense	c.1546	p.L516V	NULL	NULL	NULL	-	no_errors	AL356585.1	Clone_based_ensembl_gene	ENSG00000212857	tier1	-	-	93	0	0.00	207	20	8.77
ENSG00000225411	0	genome.wustl.edu	37	9	68400387	68400387	+	RNA	DEL	C	C	-			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	9	68400387	68400387	C	-	DEL	ENSG00000225411	ENST00000417843	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.103	-	-	-	no_errors	RP11-764K9.1	Clone_based_vega_gene	ENSG00000225411	tier1			20	0	0.00	9	3	25.00
ENSG00000253251	0	genome.wustl.edu	37	5	64926000	64926000	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	5	64926000	64926000	G	A	SNP	ENSG00000253251	ENST00000510585	human	ensembl	74_37	+1	putative	missense	c.586	p.E196K	1.000	NULL	NULL	-	no_errors	CTC-534A2.2	Clone_based_vega_gene	ENSG00000253251	tier1	-	-	33	0	0.00	34	9	20.93
ENSG00000261286	0	genome.wustl.edu	37	16	84494107	84494108	+	RNA	INS	-	-	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	16	84494107	84494108	-	G	INS	ENSG00000261286	ENST00000565700	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-517C16.2	Clone_based_vega_gene	ENSG00000261286	tier1			106	0	0.00	85	32	27.35
EP300	0	genome.wustl.edu	37	22	41565533	41565533	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	22	41565533	41565533	G	T	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.4199	p.S1400I	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	tier1	-	-	25	0	0.00	51	26	33.77
FAHD2B	0	genome.wustl.edu	37	2	97757727	97757727	+	Splice_Site	DEL	T	T	-			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	97757727	97757727	T	-	DEL	FAHD2B	ENST00000414820	human	ensembl	74_37	-1	known	splice_site_del	c.1-2	e1-2	0.244	-	-	-	no_errors	FAHD2B	HGNC	ENSG00000144199	tier1			8	0	0.00	3	3	50.00
FAM135A	0	genome.wustl.edu	37	6	71234985	71234985	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	6	71234985	71234985	G	A	SNP	FAM135A	ENST00000418814	human	ensembl	74_37	+1	known	missense	c.2198	p.R733Q	1.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase	-	no_errors	FAM135A	HGNC	ENSG00000082269	tier1	rs143752744	-	29	0	0.00	31	8	20.51
FAM13A	0	genome.wustl.edu	37	4	89859293	89859293	+	Silent	SNP	A	A	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	4	89859293	89859293	A	G	SNP	FAM13A	ENST00000264344	human	ensembl	74_37	-1	known	silent	c.705	p.Y235	0.022	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13A	HGNC	ENSG00000138640	tier1	-	-	31	0	0.00	29	7	19.44
FAM69B	0	genome.wustl.edu	37	9	139618184	139618184	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	9	139618184	139618184	G	T	SNP	FAM69B	ENST00000371692	human	ensembl	74_37	+1	known	missense	c.1254	p.K418N	1.000	NULL	pfam_FAM69_kinase_dom	-	no_errors	FAM69B	HGNC	ENSG00000165716	tier1	-	-	55	0	0.00	84	10	10.64
FIGN	0	genome.wustl.edu	37	2	164466292	164466292	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	164466292	164466292	G	A	SNP	FIGN	ENST00000333129	human	ensembl	74_37	-1	known	missense	c.2050	p.R684C	1.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263	tier1	-	-	52	0	0.00	53	31	36.90
FLRT2	0	genome.wustl.edu	37	14	86090075	86090075	+	RNA	DEL	A	A	-			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	14	86090075	86090075	A	-	DEL	FLRT2	ENST00000553650	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	FLRT2	HGNC	ENSG00000185070	tier1			35	0	0.00	28	4	12.50
FNDC1	0	genome.wustl.edu	37	6	159692412	159692412	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	6	159692412	159692412	G	A	SNP	FNDC1	ENST00000297267	human	ensembl	74_37	+1	known	missense	c.5623	p.G1875R	0.968	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694	tier1	-	-	93	0	0.00	49	47	48.96
FRA10AC1	0	genome.wustl.edu	37	10	95431873	95431873	+	RNA	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	10	95431873	95431873	C	T	SNP	FRA10AC1	ENST00000460752	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.984	-	-	-	no_errors	FRA10AC1	HGNC	ENSG00000148690	tier1	-	-	23	0	0.00	34	14	29.17
GAL3ST2	0	genome.wustl.edu	37	2	242742979	242742979	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	242742979	242742979	T	A	SNP	GAL3ST2	ENST00000192314	human	ensembl	74_37	+1	known	missense	c.595	p.F199I	0.041	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST2	HGNC	ENSG00000154252	tier1	-	-	45	0	0.00	55	8	12.70
GINS4	0	genome.wustl.edu	37	8	41393951	41393951	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	8	41393951	41393951	C	T	SNP	GINS4	ENST00000276533	human	ensembl	74_37	+1	known	nonsense	c.169	p.Q57*	1.000	pirsf_GINS_Sld5	pfam_GINS_complex,pirsf_GINS_Sld5	-	no_errors	GINS4	HGNC	ENSG00000147536	tier1	-	-	65	0	0.00	70	16	18.60
GPR32	0	genome.wustl.edu	37	19	51274591	51274591	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	19	51274591	51274591	G	A	SNP	GPR32	ENST00000270590	human	ensembl	74_37	+1	known	missense	c.734	p.R245Q	0.048	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Formyl_pep_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	GPR32	HGNC	ENSG00000142511	tier1	-	-	107	0	0.00	85	28	24.78
GRM8	0	genome.wustl.edu	37	7	126173838	126173838	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	7	126173838	126173838	G	-	DEL	GRM8	ENST00000339582	human	ensembl	74_37	-1	known	frame_shift_del	c.1598	p.P533fs	1.000	pfam_GPCR_3_9-Cys_dom	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM8	HGNC	ENSG00000179603	tier1			103	0	0.00	136	22	13.92
HRNR	0	genome.wustl.edu	37	1	152188847	152188847	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	152188847	152188847	A	G	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.5258	p.V1753A	0.002	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915	tier1	rs145667921	-	35	0	0.00	23	4	14.81
ITGA6	0	genome.wustl.edu	37	2	173335707	173335707	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	173335707	173335707	G	T	SNP	ITGA6	ENST00000264106	human	ensembl	74_37	+1	known	missense	c.649	p.V217F	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA6	HGNC	ENSG00000091409				29	0	0.00	57	4	6.56
KIF6	0	genome.wustl.edu	37	6	39688580	39688580	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	6	39688580	39688580	G	T	SNP	KIF6	ENST00000287152	human	ensembl	74_37	-1	known	missense	c.74	p.S25Y	1.000	superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627	tier1	-	-	38	0	0.00	71	4	5.33
KIRREL	0	genome.wustl.edu	37	1	158064444	158064444	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	158064444	158064444	A	G	SNP	KIRREL	ENST00000368173	human	ensembl	74_37	+1	known	missense	c.1856	p.N619S	0.999	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL	HGNC	ENSG00000183853	tier1	-	-	72	0	0.00	59	17	22.37
KIRREL3	0	genome.wustl.edu	37	11	126306730	126306730	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	11	126306730	126306730	C	T	SNP	KIRREL3	ENST00000525144	human	ensembl	74_37	-1	known	missense	c.1528	p.E510K	0.997	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL3	HGNC	ENSG00000149571	tier1	-	-	48	0	0.00	54	31	36.47
LAMA3	0	genome.wustl.edu	37	18	21331028	21331028	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	18	21331028	21331028	G	T	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	missense	c.831	p.Q277H	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747				58	0	0.00	67	4	5.63
LOC101927016	0	genome.wustl.edu	37	13	64320963	64320963	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	13	64320963	64320963	T	G	SNP	LOC101927016	ENST00000453638	human	ensembl	74_37	+1	known	missense	c.30	p.C10W	0.979	NULL	NULL	-	no_errors	AL445989.1	Clone_based_ensembl_gene	ENSG00000226974	tier1	-	-	58	0	0.00	77	17	18.09
LOC101930284	0	genome.wustl.edu	37	1	143230398	143230398	+	RNA	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	143230398	143230398	G	T	SNP	LOC101930284	ENST00000422716	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-782C8.5	Clone_based_vega_gene	ENSG00000225278	tier1	-	-	64	0	0.00	63	7	10.00
LPCAT3	0	genome.wustl.edu	37	12	7086639	7086639	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	12	7086639	7086639	T	C	SNP	LPCAT3	ENST00000261407	human	ensembl	74_37	-1	known	missense	c.1237	p.I413V	0.957	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	LPCAT3	HGNC	ENSG00000111684	tier1	-	-	40	0	0.00	41	15	26.79
LRPPRC	0	genome.wustl.edu	37	2	44128499	44128499	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	44128499	44128499	T	C	SNP	LRPPRC	ENST00000260665	human	ensembl	74_37	-1	known	missense	c.3529	p.M1177V	0.969	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095	tier1	-	-	61	0	0.00	72	18	20.00
MAGEA9B	0	genome.wustl.edu	37	X	148664813	148664813	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	X	148664813	148664813	G	A	SNP	MAGEA9B	ENST00000243314	human	ensembl	74_37	-1	known	missense	c.23	p.P8L	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA9B	HGNC	ENSG00000123584	tier1	-	-	67	0	0.00	115	19	14.18
MAP3K1	0	genome.wustl.edu	37	5	56180554	56180554	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	5	56180554	56180554	A	-	DEL	MAP3K1	ENST00000399503	human	ensembl	74_37	+1	novel	frame_shift_del	c.3883	p.I1295fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	tier1			31	0	0.00	36	10	21.74
MAP3K4	0	genome.wustl.edu	37	6	161470625	161470625	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	6	161470625	161470625	G	T	SNP	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	nonsense	c.1321	p.E441*	0.870	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511	tier1	-	-	74	0	0.00	62	4	6.06
MAP9	0	genome.wustl.edu	37	4	156274406	156274406	+	Silent	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	4	156274406	156274406	G	T	SNP	MAP9	ENST00000311277	human	ensembl	74_37	-1	known	silent	c.1467	p.A489	0.038	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114	tier1	-	-	43	0	0.00	60	4	6.25
MDGA2	0	genome.wustl.edu	37	14	47342646	47342646	+	Silent	SNP	T	T	C			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	14	47342646	47342646	T	C	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	silent	c.2742	p.G914	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781	tier1	-	-	70	0	0.00	81	17	17.35
MOCOS	0	genome.wustl.edu	37	18	33836814	33836815	+	RNA	INS	-	-	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	18	33836814	33836815	-	T	INS	MOCOS	ENST00000588132	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MOCOS	HGNC	ENSG00000075643	tier1			13	0	0.00	9	8	47.06
MUC5B	0	genome.wustl.edu	37	11	1271669	1271669	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	11	1271669	1271669	C	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.13568	p.T4523N	0.003	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	tier1	-	-	129	0	0.00	99	46	31.72
MXI1	0	genome.wustl.edu	37	10	112038963	112038963	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	10	112038963	112038963	G	A	SNP	MXI1	ENST00000332674	human	ensembl	74_37	+1	known	missense	c.463	p.E155K	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MXI1	HGNC	ENSG00000119950	tier1	-	-	86	0	0.00	68	17	20.00
MYRF	0	genome.wustl.edu	37	11	61537890	61537893	+	Frame_Shift_Del	DEL	CCCG	CCCG	-			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	CCCG	CCCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	11	61537890	61537893	CCCG	-	DEL	MYRF	ENST00000278836	human	ensembl	74_37	+1	known	frame_shift_del	c.633_636	p.P212fs	0.999:0.999:0.988:0.044	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920	tier1			39	0	0.00	28	12	30.00
MYRF	0	genome.wustl.edu	37	11	61537912	61537912	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	11	61537912	61537912	A	T	SNP	MYRF	ENST00000278836	human	ensembl	74_37	+1	known	missense	c.655	p.M219L	1.000	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920	tier1	-	-	56	0	0.00	36	19	34.55
NASP	0	genome.wustl.edu	37	1	46073323	46073323	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	46073323	46073323	G	A	SNP	NASP	ENST00000402363	human	ensembl	74_37	+1	known	missense	c.746	p.G249E	0.008	NULL	pfam_Tetratricopeptide_SHNi-TPR_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NASP	HGNC	ENSG00000132780				27	0	0.00	35	2	5.41
NBN	0	genome.wustl.edu	37	8	90993677	90993677	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	8	90993677	90993677	T	A	SNP	NBN	ENST00000265433	human	ensembl	74_37	-1	known	missense	c.246	p.K82N	1.000	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pirsf_Nibrin_met,pfscan_FHA_dom	pfam_DNA-repair_Nbs1_C,pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_BRCT_dom,smart_FHA_dom,pirsf_Nibrin_met,pfscan_FHA_dom	-	no_errors	NBN	HGNC	ENSG00000104320	tier1	-	-	61	0	0.00	78	34	30.36
NKPD1	0	genome.wustl.edu	37	19	45656064	45656064	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	19	45656064	45656064	G	A	SNP	NKPD1	ENST00000317951	human	ensembl	74_37	-1	known	missense	c.1631	p.A544V	0.992	pfam_KAP_NTPase	pfam_KAP_NTPase	-	no_errors	NKPD1	HGNC	ENSG00000179846	tier1	-	-	67	0	0.00	56	82	59.42
NPRL3	0	genome.wustl.edu	37	16	136635	136635	+	RNA	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	16	136635	136635	G	A	SNP	NPRL3	ENST00000405960	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NPRL3	HGNC	ENSG00000103148	tier1	-	-	19	0	0.00	30	6	16.67
NXF3	0	genome.wustl.edu	37	X	102347947	102347947	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	X	102347947	102347947	G	T	SNP	NXF3	ENST00000395065	human	ensembl	74_37	-1	known	nonsense	c.5	p.S2*	0.000	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF3	HGNC	ENSG00000147206	tier1	-	-	34	0	0.00	31	56	64.37
OR3A2	0	genome.wustl.edu	37	17	3182035	3182035	+	Silent	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	17	3182035	3182035	G	A	SNP	OR3A2	ENST00000408891	human	ensembl	74_37	-1	known	silent	c.195	p.H65	0.858	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR3A2	HGNC	ENSG00000221882	tier1	-	-	17	0	0.00	7	7	50.00
PARM1	0	genome.wustl.edu	37	4	75937793	75937793	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	4	75937793	75937793	G	A	SNP	PARM1	ENST00000307428	human	ensembl	74_37	+1	known	missense	c.202	p.V68I	0.000	NULL	NULL	-	no_errors	PARM1	HGNC	ENSG00000169116	tier1	-	-	46	0	0.00	37	36	49.32
PCSK9	0	genome.wustl.edu	37	1	55512211	55512211	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	55512211	55512211	C	T	SNP	PCSK9	ENST00000302118	human	ensembl	74_37	+1	known	missense	c.415	p.H139Y	0.998	pfam_Inhibitor_I9,superfamily_Prot_inh_propept	pfam_Peptidase_S8/S53_dom,pfam_Inhibitor_I9,superfamily_Peptidase_S8/S53_dom,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK9	HGNC	ENSG00000169174	tier1	-	-	55	0	0.00	28	37	56.92
PELI2	0	genome.wustl.edu	37	14	56645145	56645145	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	14	56645145	56645145	G	T	SNP	PELI2	ENST00000267460	human	ensembl	74_37	+1	known	missense	c.170	p.S57I	1.000	pfam_Pellino_fam	pfam_Pellino_fam	-	no_errors	PELI2	HGNC	ENSG00000139946	tier1	-	-	110	0	0.00	111	32	22.38
PEX5L	0	genome.wustl.edu	37	3	179592166	179592166	+	Silent	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	3	179592166	179592166	G	A	SNP	PEX5L	ENST00000467460	human	ensembl	74_37	-1	known	silent	c.675	p.S225	0.812	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5L	HGNC	ENSG00000114757	tier1	rs139208096	-	86	0	0.00	83	16	16.16
PHF15	0	genome.wustl.edu	37	5	133895550	133895550	+	Silent	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	5	133895550	133895550	C	T	SNP	PHF15	ENST00000395003	human	ensembl	74_37	+1	known	silent	c.342	p.A114	0.012	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143	tier1	-	-	52	0	0.00	81	14	14.74
PID1	0	genome.wustl.edu	37	2	229890645	229890645	+	Silent	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	229890645	229890645	C	T	SNP	PID1	ENST00000354069	human	ensembl	74_37	-1	known	silent	c.456	p.G152	0.073	smart_PTB/PI_dom	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	PID1	HGNC	ENSG00000153823	tier1	-	-	109	0	0.00	133	22	14.19
PIKFYVE	0	genome.wustl.edu	37	2	209198070	209198070	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	209198070	209198070	C	T	SNP	PIKFYVE	ENST00000264380	human	ensembl	74_37	+1	known	missense	c.3995	p.S1332F	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_GroEL-like_apical_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020	tier1	-	-	63	0	0.00	70	15	17.65
PKD1L1	0	genome.wustl.edu	37	7	47851429	47851429	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	7	47851429	47851429	G	A	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	missense	c.7567	p.L2523F	0.000	pfam_PKD1_2_channel	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	tier1	-	-	52	0	0.00	54	11	16.92
PLEKHA3	0	genome.wustl.edu	37	2	179346638	179346638	+	RNA	SNP	A	A	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	179346638	179346638	A	G	SNP	PLEKHA3	ENST00000461474	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLEKHA3	HGNC	ENSG00000116095	tier1	-	-	23	0	0.00	33	11	25.00
POPDC3	0	genome.wustl.edu	37	6	105606536	105606536	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	6	105606536	105606536	G	A	SNP	POPDC3	ENST00000254765	human	ensembl	74_37	-1	known	missense	c.685	p.R229C	1.000	pfam_Popeye_prot,superfamily_cNMP-bd-like	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	POPDC3	HGNC	ENSG00000132429	tier1	-	-	32	0	0.00	29	23	44.23
PPFIA2	0	genome.wustl.edu	37	12	81991809	81991809	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	12	81991809	81991809	C	G	SNP	PPFIA2	ENST00000407050	human	ensembl	74_37	-1	putative	missense	c.3	p.M1I	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	tier1	-	-	39	0	0.00	57	13	18.57
PRB2	0	genome.wustl.edu	37	12	11546795	11546795	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	12	11546795	11546795	G	A	SNP	PRB2	ENST00000389362	human	ensembl	74_37	-1	known	missense	c.217	p.P73S	0.003	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335				87	0	0.00	47	6	11.32
PRDM14	0	genome.wustl.edu	37	8	70964528	70964528	+	Silent	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	8	70964528	70964528	G	A	SNP	PRDM14	ENST00000276594	human	ensembl	74_37	-1	known	silent	c.1500	p.A500	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596	tier1	-	-	74	0	0.00	117	37	24.03
PSMA3	0	genome.wustl.edu	37	14	58738592	58738592	+	Silent	SNP	A	A	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	14	58738592	58738592	A	G	SNP	PSMA3	ENST00000216455	human	ensembl	74_37	+1	known	silent	c.747	p.E249	1.000	NULL	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA3	HGNC	ENSG00000100567				20	0	0.00	26	2	7.14
RAB3GAP2	0	genome.wustl.edu	37	1	220440106	220440106	+	RNA	SNP	T	T	C			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	220440106	220440106	T	C	SNP	RAB3GAP2	ENST00000462353	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.944	-	-	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	tier1	-	-	87	0	0.00	85	28	24.78
RANBP2	0	genome.wustl.edu	37	2	109381161	109381161	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	109381161	109381161	C	T	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.4166	p.P1389L	0.992	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				29	0	0.00	32	3	8.57
RP9P	0	genome.wustl.edu	37	7	32957147	32957147	+	RNA	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	7	32957147	32957147	G	T	SNP	RP9P	ENST00000381639	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP9P	HGNC	ENSG00000205763	tier1	-	-	32	0	0.00	38	4	9.52
SEL1L3	0	genome.wustl.edu	37	4	25760579	25760579	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	4	25760579	25760579	G	T	SNP	SEL1L3	ENST00000399878	human	ensembl	74_37	-1	known	missense	c.3067	p.Q1023K	0.979	NULL	pfam_Sel1-like,superfamily_ConA-like_lec_gl_sf,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490	tier1	-	-	49	0	0.00	66	4	5.71
SELE	0	genome.wustl.edu	37	1	169696946	169696946	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	169696946	169696946	G	T	SNP	SELE	ENST00000333360	human	ensembl	74_37	-1	known	missense	c.1402	p.H468N	0.002	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,pfam_EG-like_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_EG-like_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELE	HGNC	ENSG00000007908				26	0	0.00	37	3	7.50
SIK2	0	genome.wustl.edu	37	11	111491117	111491117	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	11	111491117	111491117	G	T	SNP	SIK2	ENST00000304987	human	ensembl	74_37	+1	known	nonsense	c.307	p.E103*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK2	HGNC	ENSG00000170145				14	0	0.00	18	2	10.00
SLC16A4	0	genome.wustl.edu	37	1	110921577	110921577	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	110921577	110921577	G	C	SNP	SLC16A4	ENST00000369779	human	ensembl	74_37	-1	known	missense	c.928	p.L310V	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A4	HGNC	ENSG00000168679	tier1	-	-	30	0	0.00	33	5	13.16
SLC18A1	0	genome.wustl.edu	37	8	20007219	20007219	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	8	20007219	20007219	C	T	SNP	SLC18A1	ENST00000276373	human	ensembl	74_37	-1	known	missense	c.1114	p.G372R	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Multidrug-R	-	no_errors	SLC18A1	HGNC	ENSG00000036565				22	0	0.00	32	2	5.88
SLC26A7	0	genome.wustl.edu	37	8	92307786	92307786	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	8	92307786	92307786	C	T	SNP	SLC26A7	ENST00000309536	human	ensembl	74_37	+1	known	missense	c.332	p.S111L	1.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A7	HGNC	ENSG00000147606	tier1	-	-	46	0	0.00	90	14	13.46
SLITRK2	0	genome.wustl.edu	37	X	144905225	144905225	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	X	144905225	144905225	C	A	SNP	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	missense	c.1282	p.L428I	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	tier1	-	-	39	0	0.00	56	8	12.50
SNAP25	0	genome.wustl.edu	37	20	10287391	10287391	+	RNA	SNP	A	A	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	20	10287391	10287391	A	G	SNP	SNAP25	ENST00000495883	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNAP25	HGNC	ENSG00000132639	tier1	-	-	50	0	0.00	48	26	35.14
SNHG1	0	genome.wustl.edu	37	11	62622798	62622798	+	RNA	SNP	A	A	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	11	62622798	62622798	A	G	SNP	SNHG1	ENST00000384147	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.931	-	-	-	no_errors	SNHG1	HGNC	ENSG00000255717	tier1	-	-	31	0	0.00	33	10	23.26
SNORA25	0	genome.wustl.edu	37	11	93463755	93463755	+	RNA	SNP	G	G	C			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	11	93463755	93463755	G	C	SNP	SNORA25	ENST00000384384	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORA25	HGNC	ENSG00000207112	tier1	-	-	72	0	0.00	57	16	21.92
SPECC1L	0	genome.wustl.edu	37	22	24718567	24718567	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	22	24718567	24718567	G	T	SNP	SPECC1L	ENST00000314328	human	ensembl	74_37	+1	known	missense	c.1619	p.R540L	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_bHLH_dom,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1L	HGNC	ENSG00000100014	tier1	-	-	33	0	0.00	54	4	6.90
SYNPO	0	genome.wustl.edu	37	5	150029259	150029259	+	Silent	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	5	150029259	150029259	C	T	SNP	SYNPO	ENST00000394243	human	ensembl	74_37	+1	known	silent	c.2154	p.S718	0.001	NULL	NULL	-	no_errors	SYNPO	HGNC	ENSG00000171992	tier1	-	-	32	0	0.00	13	18	58.06
TCHH	0	genome.wustl.edu	37	1	152081839	152081839	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	152081839	152081839	C	T	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.3854	p.R1285H	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450	tier1	-	-	38	0	0.00	40	13	24.53
TF	0	genome.wustl.edu	37	3	133478024	133478024	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	3	133478024	133478024	G	A	SNP	TF	ENST00000402696	human	ensembl	74_37	+1	known	missense	c.1054	p.E352K	0.068	smart_Transferrin_fam,pirsf_Transferrin	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	TF	HGNC	ENSG00000091513	tier1	-	-	24	0	0.00	38	7	15.56
TGFBR2	0	genome.wustl.edu	37	3	30715678	30715678	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	3	30715678	30715678	G	A	SNP	TGFBR2	ENST00000359013	human	ensembl	74_37	+1	known	missense	c.1411	p.D471N	1.000	pirsf_Transform_growth_fac-b_typ-2,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513	tier1	-	-	126	0	0.00	99	22	18.03
THBS4	0	genome.wustl.edu	37	5	79378262	79378262	+	Silent	SNP	T	T	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	5	79378262	79378262	T	G	SNP	THBS4	ENST00000350881	human	ensembl	74_37	+1	known	silent	c.2718	p.A906	0.128	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl_sf	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296				68	0	0.00	63	10	13.70
THBS4	0	genome.wustl.edu	37	5	79378263	79378263	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	5	79378263	79378263	G	T	SNP	THBS4	ENST00000350881	human	ensembl	74_37	+1	known	missense	c.2719	p.D907Y	1.000	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl_sf	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296				69	0	0.00	61	10	14.08
TMCC1	0	genome.wustl.edu	37	3	129373823	129373823	+	Silent	SNP	G	G	C			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	3	129373823	129373823	G	C	SNP	TMCC1	ENST00000393238	human	ensembl	74_37	-1	known	silent	c.1635	p.A545	0.979	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765	tier1	-	-	39	0	0.00	47	18	27.69
TMEM132C	0	genome.wustl.edu	37	12	129190651	129190651	+	Silent	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	12	129190651	129190651	G	A	SNP	TMEM132C	ENST00000435159	human	ensembl	74_37	+1	known	silent	c.3138	p.S1046	0.129	NULL	NULL	-	no_errors	TMEM132C	HGNC	ENSG00000181234	tier1	-	-	46	0	0.00	32	11	25.58
TMEM221	0	genome.wustl.edu	37	19	17556067	17556067	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	19	17556067	17556067	C	T	SNP	TMEM221	ENST00000341130	human	ensembl	74_37	-1	known	missense	c.347	p.R116H	0.997	NULL	NULL	-	no_errors	TMEM221	HGNC	ENSG00000188051	tier1	-	-	60	0	0.00	54	12	18.18
TMPO	0	genome.wustl.edu	37	12	98931427	98931427	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	12	98931427	98931427	A	G	SNP	TMPO	ENST00000261210	human	ensembl	74_37	+1	novel	missense	c.740	p.N247S	0.001	NULL	pfam_LEM-like_dom,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom,pfscan_LEM-like_dom	-	no_errors	TMPO	HGNC	ENSG00000120802	tier1	-	-	15	0	0.00	19	7	26.92
TOR1AIP2	0	genome.wustl.edu	37	1	179815756	179815756	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	179815756	179815756	G	A	SNP	TOR1AIP2	ENST00000367612	human	ensembl	74_37	-1	known	missense	c.863	p.S288F	0.682	pfam_Lamina-ass_polypeptide_CLAP1C	pfam_Lamina-ass_polypeptide_CLAP1C	-	no_errors	TOR1AIP2	HGNC	ENSG00000169905	tier1	-	-	71	0	0.00	72	17	19.10
TP53	0	genome.wustl.edu	37	17	7577610	7577610	+	Splice_Site	SNP	T	T	C			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	17	7577610	7577610	T	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.673-2	e6-2	0.999	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	69	0	0.00	54	50	48.08
TRIB3	0	genome.wustl.edu	37	20	371973	371973	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	20	371973	371973	G	A	SNP	TRIB3	ENST00000422053	human	ensembl	74_37	+1	known	missense	c.415	p.A139T	0.001	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	TRIB3	HGNC	ENSG00000101255	tier1	-	-	45	0	0.00	54	29	34.94
TTLL13	0	genome.wustl.edu	37	15	90801306	90801306	+	Silent	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	15	90801306	90801306	C	T	SNP	TTLL13	ENST00000438251	human	ensembl	74_37	+1	known	silent	c.972	p.H324	0.967	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL13	HGNC	ENSG00000213471	tier1	-	-	37	0	0.00	24	21	46.67
UBR4	0	genome.wustl.edu	37	1	19422060	19422060	+	Silent	SNP	G	G	C			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	19422060	19422060	G	C	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	silent	c.13605	p.V4535	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	tier1	-	-	87	0	0.00	78	20	20.41
UBR7	0	genome.wustl.edu	37	14	93676302	93676302	+	Nonsense_Mutation	SNP	A	A	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	14	93676302	93676302	A	T	SNP	UBR7	ENST00000013070	human	ensembl	74_37	+1	known	nonsense	c.283	p.R95*	1.000	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	pfam_Znf_N-recognin,superfamily_Znf_FYVE_PHD,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR7	HGNC	ENSG00000012963	tier1	-	-	72	0	0.00	76	26	25.49
UNC13B	0	genome.wustl.edu	37	9	35396854	35396854	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	9	35396854	35396854	G	A	SNP	UNC13B	ENST00000378496	human	ensembl	74_37	+1	known	missense	c.3205	p.V1069M	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722	tier1	rs140663072	-	55	0	0.00	93	24	20.51
VCP	0	genome.wustl.edu	37	9	35059557	35059557	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	9	35059557	35059557	G	T	SNP	VCP	ENST00000358901	human	ensembl	74_37	-1	known	missense	c.1937	p.P646Q	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_AAA_ATPase_CDC48	pfam_ATPase_AAA_core,pfam_CDC4_N-term_subdom,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Cdc48_dom2,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_Vps4_C,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase,tigrfam_AAA_ATPase_CDC48	-	no_errors	VCP	HGNC	ENSG00000165280				40	0	0.00	47	3	6.00
VMP1	0	genome.wustl.edu	37	17	57889104	57889104	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	17	57889104	57889104	G	A	SNP	VMP1	ENST00000262291	human	ensembl	74_37	+1	known	missense	c.869	p.G290D	1.000	NULL	NULL	-	no_errors	VMP1	HGNC	ENSG00000062716	tier1	-	-	60	0	0.00	67	13	16.25
VWF	0	genome.wustl.edu	37	12	6062682	6062682	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	12	6062682	6062682	C	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.7966	p.G2656R	1.000	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	tier1	-	-	29	0	0.00	57	7	10.94
WNT9A	0	genome.wustl.edu	37	1	228111888	228111888	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	1	228111888	228111888	T	C	SNP	WNT9A	ENST00000272164	human	ensembl	74_37	-1	known	missense	c.566	p.K189R	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt9a	-	no_errors	WNT9A	HGNC	ENSG00000143816	tier1	-	-	78	0	0.00	82	26	24.07
XIRP2	0	genome.wustl.edu	37	2	168115690	168115690	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	2	168115690	168115690	G	C	SNP	XIRP2	ENST00000420519	human	ensembl	74_37	+1	known	missense	c.2733	p.K911N	0.002	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	XIRP2	HGNC	ENSG00000163092	tier1	-	-	83	0	0.00	88	18	16.98
ZNF441	0	genome.wustl.edu	37	19	11891849	11891849	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	19	11891849	11891849	T	G	SNP	ZNF441	ENST00000357901	human	ensembl	74_37	+1	known	missense	c.1210	p.Y404D	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044	tier1	-	-	51	0	0.00	50	17	25.37
ZNF479	0	genome.wustl.edu	37	7	57187818	57187818	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49P-01A-11D-A247-09	TCGA-LN-A49P-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b817460-a959-4426-b0e4-1ef0c5fa7a42	1909da38-51a6-4177-a899-14f1f61c0b69	7	57187818	57187818	C	T	SNP	ZNF479	ENST00000331162	human	ensembl	74_37	-1	known	missense	c.1304	p.R435K	0.990	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177				65	0	0.00	68	5	6.85
