Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AGAP1	0	genome.wustl.edu	37	2	236649666	236649666	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	236649666	236649666	G	T	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.370	p.D124Y	1.000	pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985	tier1	-	-	44	0	0.00	35	27	43.55
AGO2	0	genome.wustl.edu	37	8	141542743	141542743	+	RNA	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	8	141542743	141542743	G	A	SNP	AGO2	ENST00000520628	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	AGO2	HGNC	ENSG00000123908	tier1	-	-	25	0	0.00	19	9	31.03
ALDH1L1	0	genome.wustl.edu	37	3	125855621	125855621	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	3	125855621	125855621	G	T	SNP	ALDH1L1	ENST00000393434	human	ensembl	74_37	-1	known	missense	c.1330	p.P444T	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	tier1	-	-	38	0	0.00	25	10	28.57
AMY2B	0	genome.wustl.edu	37	1	104116487	104116487	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	104116487	104116487	C	A	SNP	AMY2B	ENST00000361355	human	ensembl	74_37	+1	known	missense	c.671	p.A224E	0.991	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038	tier1	-	-	126	0	0.00	51	72	58.54
AMY2B	0	genome.wustl.edu	37	1	104117883	104117883	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	104117883	104117883	G	A	SNP	AMY2B	ENST00000361355	human	ensembl	74_37	+1	known	missense	c.917	p.R306K	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,prints_Alpha_amylase	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038	tier1	-	-	107	0	0.00	69	23	25.00
ANKHD1	0	genome.wustl.edu	37	5	139917797	139917797	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	5	139917797	139917797	C	G	SNP	ANKHD1	ENST00000297183	human	ensembl	74_37	+1	known	missense	c.7355	p.S2452C	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503	tier1	-	-	54	0	0.00	28	9	24.32
AP4E1	0	genome.wustl.edu	37	15	51250986	51250986	+	Silent	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	15	51250986	51250986	T	C	SNP	AP4E1	ENST00000261842	human	ensembl	74_37	+1	known	silent	c.1846	p.L616	0.421	superfamily_ARM-type_fold,pirsf_AP4_complex_esu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_bsu_C,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	-	no_errors	AP4E1	HGNC	ENSG00000081014	tier1	-	-	30	0	0.00	31	4	11.43
APOB	0	genome.wustl.edu	37	2	21227283	21227283	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	21227283	21227283	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.11945	p.A3982V	0.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	tier1	-	-	114	0	0.00	69	52	42.98
APOB	0	genome.wustl.edu	37	2	21234621	21234621	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	21234621	21234621	C	T	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.5119	p.E1707K	1.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	tier1	-	-	28	0	0.00	25	16	39.02
ARHGAP21	0	genome.wustl.edu	37	10	24874807	24874807	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	10	24874807	24874807	T	C	SNP	ARHGAP21	ENST00000396432	human	ensembl	74_37	-1	known	missense	c.4411	p.I1471V	0.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863	tier1	-	-	147	0	0.00	176	63	26.36
ARMC10	0	genome.wustl.edu	37	7	102738985	102738985	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	7	102738985	102738985	A	G	SNP	ARMC10	ENST00000323716	human	ensembl	74_37	+1	known	missense	c.1017	p.I339M	0.000	superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMC10	HGNC	ENSG00000170632				39	0	0.00	68	4	5.56
ARRDC3	0	genome.wustl.edu	37	5	90670002	90670002	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	5	90670002	90670002	G	T	SNP	ARRDC3	ENST00000265138	human	ensembl	74_37	-1	known	missense	c.962	p.T321N	1.000	superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC3	HGNC	ENSG00000113369	tier1	-	-	26	0	0.00	21	3	12.00
ATP13A5	0	genome.wustl.edu	37	3	192997166	192997166	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	3	192997166	192997166	G	T	SNP	ATP13A5	ENST00000342358	human	ensembl	74_37	-1	known	missense	c.3304	p.R1102S	0.231	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A5	HGNC	ENSG00000187527				13	0	0.00	35	2	5.41
BEND2	0	genome.wustl.edu	37	X	18189223	18189223	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	X	18189223	18189223	G	A	SNP	BEND2	ENST00000380033	human	ensembl	74_37	-1	known	nonsense	c.2083	p.Q695*	0.004	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND2	HGNC	ENSG00000177324	tier1	-	-	17	0	0.00	2	9	81.82
C7orf31	0	genome.wustl.edu	37	7	25191224	25191224	+	Silent	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	7	25191224	25191224	T	C	SNP	C7orf31	ENST00000283905	human	ensembl	74_37	-1	known	silent	c.675	p.V225	0.220	NULL	NULL	-	no_errors	C7orf31	HGNC	ENSG00000153790	tier1	-	-	36	0	0.00	17	20	54.05
C9orf78	0	genome.wustl.edu	37	9	132596001	132596001	+	RNA	DEL	A	A	-			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	9	132596001	132596001	A	-	DEL	C9orf78	ENST00000461762	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.115	-	-	-	no_errors	C9orf78	HGNC	ENSG00000136819	tier1			20	0	0.00	22	3	12.00
CAND1	0	genome.wustl.edu	37	12	67700046	67700046	+	Silent	SNP	A	A	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	12	67700046	67700046	A	T	SNP	CAND1	ENST00000545606	human	ensembl	74_37	+1	known	silent	c.2598	p.S866	0.147	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530	tier1	-	-	22	0	0.00	14	13	48.15
CBL	0	genome.wustl.edu	37	11	119149355	119149355	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	11	119149355	119149355	T	A	SNP	CBL	ENST00000264033	human	ensembl	74_37	+1	known	missense	c.1363	p.Y455N	1.000	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/Ts_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBL	HGNC	ENSG00000110395	tier1	-	-	30	0	0.00	14	5	26.32
CCDC39	0	genome.wustl.edu	37	3	180337677	180337677	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	3	180337677	180337677	C	T	SNP	CCDC39	ENST00000442201	human	ensembl	74_37	-1	known	missense	c.2080	p.A694T	0.999	superfamily_Prefoldin	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075	tier1	-	-	38	0	0.00	51	29	36.25
CCT8L2	0	genome.wustl.edu	37	22	17072831	17072831	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	22	17072831	17072831	C	T	SNP	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	missense	c.610	p.G204R	0.008	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445	tier1	-	-	63	0	0.00	13	9	40.91
CDC27	0	genome.wustl.edu	37	17	45214646	45214646	+	Silent	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	17	45214646	45214646	T	C	SNP	CDC27	ENST00000531206	human	ensembl	74_37	-1	known	silent	c.1803	p.Q601	1.000	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897				32	0	0.00	53	4	7.02
CDK18	0	genome.wustl.edu	37	1	205498558	205498558	+	Splice_Site	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	205498558	205498558	G	T	SNP	CDK18	ENST00000506784	human	ensembl	74_37	+1	known	splice_site	c.1268+1	e11+1	1.000	-	-	-	no_errors	CDK18	HGNC	ENSG00000117266	tier1	-	-	29	0	0.00	6	10	62.50
CDK18	0	genome.wustl.edu	37	1	205498560	205498560	+	RNA	SNP	A	A	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	205498560	205498560	A	T	SNP	CDK18	ENST00000468954	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.989	-	-	-	no_errors	CDK18	HGNC	ENSG00000117266	tier1	-	-	27	0	0.00	7	10	58.82
CDKL3	0	genome.wustl.edu	37	5	133643980	133643980	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	5	133643980	133643980	G	T	SNP	CDKL3	ENST00000265334	human	ensembl	74_37	-1	known	missense	c.1213	p.P405T	0.001	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL3	HGNC	ENSG00000006837	tier1	-	-	98	0	0.00	32	37	53.62
CDKN2A	0	genome.wustl.edu	37	9	21971111	21971111	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	9	21971111	21971111	G	A	SNP	CDKN2A	ENST00000361570	human	ensembl	74_37	-1	known	missense	c.413	p.A138V	1.000	NULL	pfam_Cyclin_kinase-Inhib_2A	-	no_errors	CDKN2A	HGNC	ENSG00000147889	tier1	rs121913385	-	12	0	0.00	1	11	91.67
CEL	0	genome.wustl.edu	37	9	135945858	135945858	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	9	135945858	135945858	A	G	SNP	CEL	ENST00000372080	human	ensembl	74_37	+1	known	missense	c.1306	p.T436A	0.996	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	tier1	-	-	25	0	0.00	29	28	49.12
CENPO	0	genome.wustl.edu	37	2	25037312	25037312	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	25037312	25037312	A	C	SNP	CENPO	ENST00000260662	human	ensembl	74_37	+1	known	missense	c.284	p.E95A	0.076	NULL	pfam_CENP-O	-	no_errors	CENPO	HGNC	ENSG00000138092	tier1	-	-	62	0	0.00	26	28	51.85
CEP290	0	genome.wustl.edu	37	12	88477689	88477689	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	12	88477689	88477689	T	A	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	missense	c.4753	p.I1585F	0.119	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	tier1	-	-	32	0	0.00	13	6	31.58
CLEC18B	0	genome.wustl.edu	37	16	74452168	74452168	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	16	74452168	74452168	G	A	SNP	CLEC18B	ENST00000339953	human	ensembl	74_37	-1	known	missense	c.245	p.A82V	0.875	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EG-like_dom,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18B	HGNC	ENSG00000140839	tier1	-	-	40	0	0.00	39	6	13.33
CMYA5	0	genome.wustl.edu	37	5	79025179	79025179	+	Silent	SNP	C	C	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	5	79025179	79025179	C	A	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	silent	c.591	p.T197	0.017	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	tier1	-	-	16	0	0.00	13	6	31.58
COBL	0	genome.wustl.edu	37	7	51096150	51096150	+	Silent	SNP	G	G	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	7	51096150	51096150	G	C	SNP	COBL	ENST00000395542	human	ensembl	74_37	-1	known	silent	c.2889	p.V963	0.004	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078	tier1	-	-	51	0	0.00	24	27	52.94
COL17A1	0	genome.wustl.edu	37	10	105792467	105792468	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	10	105792467	105792468	-	CA	INS	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	frame_shift_ins	c.4403_4402	p.G1468fs	1.000:0.998	pfam_Collagen	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	tier1			51	0	0.00	10	26	72.22
COL7A1	0	genome.wustl.edu	37	3	48615783	48615783	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	3	48615783	48615783	C	A	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	missense	c.5503	p.D1835Y	1.000	NULL	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	tier1	-	-	41	0	0.00	6	18	75.00
CSGALNACT2	0	genome.wustl.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	10	43659419	43659419	G	T	SNP	CSGALNACT2	ENST00000374466	human	ensembl	74_37	+1	known	missense	c.1086	p.L362F	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT2	HGNC	ENSG00000169826				68	0	0.00	53	3	5.36
CSMD3	0	genome.wustl.edu	37	8	113678609	113678609	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	8	113678609	113678609	C	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.2713	p.V905L	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	tier1	-	-	35	0	0.00	40	21	34.43
DARS2	0	genome.wustl.edu	37	1	173807358	173807358	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	173807358	173807358	T	G	SNP	DARS2	ENST00000361951	human	ensembl	74_37	+1	known	missense	c.801	p.D267E	1.000	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,prints_Lys-tRNA-synth_II_C,tigrfam_Asp-tRNA-ligase_IIb_bac/mt	pfam_aa-tRNA-synt_II,pfam_GAD_dom,pfam_NA-bd_OB_tRNA,superfamily_GAD_dom,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,prints_Lys-tRNA-synth_II_C,tigrfam_Asp-tRNA-ligase_IIb_bac/mt	-	no_errors	DARS2	HGNC	ENSG00000117593	tier1	-	-	56	0	0.00	40	11	21.57
DAZAP2	0	genome.wustl.edu	37	12	51634217	51634218	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	12	51634217	51634218	-	T	INS	DAZAP2	ENST00000549555	human	ensembl	74_37	+1	known	frame_shift_ins	c.104_105	p.T36fs	1.000:1.000	pfam_DAZ_assoc-2	pfam_DAZ_assoc-2	-	no_errors	DAZAP2	HGNC	ENSG00000183283	tier1			61	0	0.00	31	24	43.64
DGCR2	0	genome.wustl.edu	37	22	19052582	19052582	+	Splice_Site	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	22	19052582	19052582	T	C	SNP	DGCR2	ENST00000263196	human	ensembl	74_37	-1	known	splice_site	c.329-2	e4-2	1.000	-	-	-	no_errors	DGCR2	HGNC	ENSG00000070413	tier1	-	-	15	0	0.00	8	9	52.94
DIO2	0	genome.wustl.edu	37	14	80669418	80669418	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	14	80669418	80669418	G	T	SNP	DIO2	ENST00000557125	human	ensembl	74_37	-1	putative	missense	c.60	p.N20K	1.000	NULL	NULL	-	no_errors	DIO2	HGNC	ENSG00000211448	tier1	-	-	35	0	0.00	11	13	54.17
DMD	0	genome.wustl.edu	37	X	32472792	32472792	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	X	32472792	32472792	A	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.3590	p.V1197D	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	tier1	-	-	28	0	0.00	12	4	25.00
DNAJC1	0	genome.wustl.edu	37	10	22208845	22208845	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	10	22208845	22208845	C	A	SNP	DNAJC1	ENST00000376980	human	ensembl	74_37	-1	known	missense	c.551	p.S184I	1.000	NULL	pfam_DnaJ_domain,pfam_SANT/Myb,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC1	HGNC	ENSG00000136770	tier1	-	-	28	0	0.00	38	4	9.52
DNAJC13	0	genome.wustl.edu	37	3	132169648	132169648	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	3	132169648	132169648	A	G	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	missense	c.494	p.Y165C	1.000	NULL	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246	tier1	-	-	19	0	0.00	11	44	80.00
DTL	0	genome.wustl.edu	37	1	212241588	212241588	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	212241588	212241588	C	T	SNP	DTL	ENST00000366991	human	ensembl	74_37	+1	known	missense	c.736	p.R246C	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DTL	HGNC	ENSG00000143476	tier1	-	-	71	0	0.00	42	16	27.59
DYSF	0	genome.wustl.edu	37	2	71896314	71896314	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	71896314	71896314	G	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.5595	p.K1865N	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636	tier1	-	-	46	0	0.00	27	9	25.00
EFCAB4A	0	genome.wustl.edu	37	11	829507	829508	+	Frame_Shift_Ins	INS	-	-	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	11	829507	829508	-	G	INS	EFCAB4A	ENST00000450448	human	ensembl	74_37	+1	known	frame_shift_ins	c.425_426	p.E143fs	0.928:0.997	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB4A	HGNC	ENSG00000177685	tier1			58	0	0.00	43	10	18.87
EFTUD1P1	0	genome.wustl.edu	37	15	84789874	84789874	+	RNA	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	15	84789874	84789874	G	T	SNP	EFTUD1P1	ENST00000560381	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.985	-	-	-	no_errors	EFTUD1P1	HGNC	ENSG00000259404	tier1	-	-	47	0	0.00	40	12	23.08
EGR2	0	genome.wustl.edu	37	10	64575631	64575631	+	Silent	SNP	T	T	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	10	64575631	64575631	T	G	SNP	EGR2	ENST00000242480	human	ensembl	74_37	-1	known	silent	c.159	p.G53	1.000	NULL	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR2	HGNC	ENSG00000122877	tier1	-	-	16	0	0.00	1	14	93.33
ELFN2	0	genome.wustl.edu	37	22	37771876	37771877	+	RNA	INS	-	-	CCT			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	22	37771876	37771877	-	CCT	INS	ELFN2	ENST00000414347	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.043	-	-	-	no_errors	ELFN2	HGNC	ENSG00000166897	tier1			22	0	0.00	13	6	31.58
ELMOD3	0	genome.wustl.edu	37	2	85618819	85618820	+	RNA	INS	-	-	AGGC			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	85618819	85618820	-	AGGC	INS	ELMOD3	ENST00000490508	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004:0.001	-	-	-	no_errors	ELMOD3	HGNC	ENSG00000115459	tier1			25	0	0.00	20	13	39.39
ENSG00000187811	0	genome.wustl.edu	37	11	71316597	71316597	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	11	71316597	71316597	G	A	SNP	ENSG00000187811	ENST00000343767	human	ensembl	74_37	-1	known	missense	c.40	p.R14C	0.100	NULL	NULL	-	no_errors	AP000867.1	Clone_based_ensembl_gene	ENSG00000187811	tier1	-	-	113	0	0.00	457	34	6.88
ENSG00000230239	0	genome.wustl.edu	37	1	17185596	17185597	+	RNA	INS	-	-	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	17185596	17185597	-	A	INS	ENSG00000230239	ENST00000414128	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	RP11-108M9.2	Clone_based_vega_gene	ENSG00000230239	tier1			207	0	0.00	167	61	26.75
ENSG00000250770	0	genome.wustl.edu	37	12	3409292	3409292	+	RNA	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	12	3409292	3409292	G	T	SNP	ENSG00000250770	ENST00000505276	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP5-1063M23.1	Clone_based_vega_gene	ENSG00000250770	tier1	-	-	89	0	0.00	95	6	5.94
ENSG00000259455	0	genome.wustl.edu	37	15	23406970	23406970	+	Silent	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	15	23406970	23406970	C	T	SNP	ENSG00000259455	ENST00000558241	human	ensembl	74_37	-1	novel	silent	c.1866	p.R622	0.001	NULL	superfamily_Ribosomal_L7/12_C/ClpS-like,prints_Tropomyosin	-	no_errors	RP11-467N20.5	Clone_based_vega_gene	ENSG00000259455	tier1	-	-	234	0	0.00	213	14	6.17
ENSG00000267848	0	genome.wustl.edu	37	20	62585290	62585290	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	20	62585290	62585290	G	A	SNP	ENSG00000267848	ENST00000595604	human	ensembl	74_37	+1	known	missense	c.284	p.R95H	0.000	NULL	NULL	-	no_errors	AL118506.1	Clone_based_ensembl_gene	ENSG00000267848	tier1	-	-	20	0	0.00	9	14	60.87
ENSG00000270097	0	genome.wustl.edu	37	16	3050153	3050153	+	RNA	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	16	3050153	3050153	C	T	SNP	ENSG00000270097	ENST00000572086	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LA16c-380H5.3	Clone_based_vega_gene	ENSG00000270097	tier1	-	-	47	0	0.00	23	26	53.06
ESRP2	0	genome.wustl.edu	37	16	68266687	68266688	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	16	68266687	68266688	-	T	INS	ESRP2	ENST00000565858	human	ensembl	74_37	-1	known	frame_shift_ins	c.687_686	p.Q230fs	1.000:1.000	NULL	superfamily_RNaseH-like_dom,smart_RRM_dom	-	no_errors	ESRP2	HGNC	ENSG00000103067	tier1			18	0	0.00	11	14	56.00
FAM126B	0	genome.wustl.edu	37	2	201846144	201846144	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	201846144	201846144	G	T	SNP	FAM126B	ENST00000418596	human	ensembl	74_37	-1	known	missense	c.1442	p.A481D	0.661	NULL	pfam_Hyccin	-	no_errors	FAM126B	HGNC	ENSG00000155744	tier1	-	-	32	0	0.00	36	4	10.00
FAM13B	0	genome.wustl.edu	37	5	137275979	137275979	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	5	137275979	137275979	T	C	SNP	FAM13B	ENST00000033079	human	ensembl	74_37	-1	known	missense	c.2683	p.I895V	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003	tier1	-	-	35	0	0.00	13	18	58.06
FAM200B	0	genome.wustl.edu	37	4	15691676	15691676	+	RNA	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	4	15691676	15691676	C	T	SNP	FAM200B	ENST00000504137	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM200B	HGNC	ENSG00000237765	tier1	-	-	23	0	0.00	4	11	73.33
FAM227A	0	genome.wustl.edu	37	22	39046033	39046033	+	Silent	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	22	39046033	39046033	G	T	SNP	FAM227A	ENST00000406767	human	ensembl	74_37	-1	known	silent	c.123	p.P41	0.118	NULL	superfamily_Staphylcoagulase_N	-	no_errors	FAM227A	HGNC	ENSG00000184949	tier1	-	-	69	0	0.00	47	4	7.84
FBXO21	0	genome.wustl.edu	37	12	117595684	117595684	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	12	117595684	117595684	T	G	SNP	FBXO21	ENST00000330622	human	ensembl	74_37	-1	known	missense	c.1532	p.H511P	1.000	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom,tigrfam_Hemimethylated_DNA-bd_dom	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108	tier1	-	-	33	0	0.00	23	10	29.41
FBXO9	0	genome.wustl.edu	37	6	52960336	52960336	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	6	52960336	52960336	A	G	SNP	FBXO9	ENST00000244426	human	ensembl	74_37	+1	known	missense	c.1109	p.Y370C	1.000	superfamily_F-box_dom	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO9	HGNC	ENSG00000112146	tier1	-	-	48	0	0.00	22	30	57.69
FBXW12	0	genome.wustl.edu	37	3	48420016	48420016	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	3	48420016	48420016	G	A	SNP	FBXW12	ENST00000296438	human	ensembl	74_37	+1	known	missense	c.615	p.M205I	0.583	superfamily_Quino_amine_DH_bsu	pfam_F-box_dom,superfamily_Quino_amine_DH_bsu,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXW12	HGNC	ENSG00000164049	tier1	-	-	16	0	0.00	4	15	78.95
FOLR3	0	genome.wustl.edu	37	11	71847151	71847151	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	11	71847151	71847151	C	A	SNP	FOLR3	ENST00000456237	human	ensembl	74_37	+1	known	missense	c.153	p.D51E	0.012	NULL	pfam_Folate_rcpt-like	-	no_errors	FOLR3	HGNC	ENSG00000110203	tier1	-	-	32	0	0.00	115	14	10.85
FRYL	0	genome.wustl.edu	37	4	48555255	48555255	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	4	48555255	48555255	T	A	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.4412	p.Y1471F	0.234	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539	tier1	-	-	34	0	0.00	7	18	72.00
FUBP1	0	genome.wustl.edu	37	1	78414589	78414589	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	78414589	78414589	T	C	SNP	FUBP1	ENST00000370767	human	ensembl	74_37	-1	putative	missense	c.1937	p.N646S	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP1	HGNC	ENSG00000162613	tier1	-	-	15	0	0.00	24	7	22.58
GGA2	0	genome.wustl.edu	37	16	23497446	23497446	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	16	23497446	23497446	T	C	SNP	GGA2	ENST00000309859	human	ensembl	74_37	-1	known	missense	c.688	p.K230E	0.761	pfam_GAT,pfscan_GAT	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ENTH_VHS,superfamily_Coatomer/clathrin_app_Ig-like,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA2	HGNC	ENSG00000103365	tier1	-	-	43	0	0.00	28	16	36.36
GINM1	0	genome.wustl.edu	37	6	149900994	149900994	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	6	149900994	149900994	A	G	SNP	GINM1	ENST00000367419	human	ensembl	74_37	+1	known	missense	c.454	p.I152V	0.994	NULL	NULL	-	no_errors	GINM1	HGNC	ENSG00000055211	tier1	-	-	34	0	0.00	1	19	95.00
GOLM1	0	genome.wustl.edu	37	9	88650485	88650485	+	Silent	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	9	88650485	88650485	C	T	SNP	GOLM1	ENST00000388711	human	ensembl	74_37	-1	known	silent	c.813	p.P271	0.000	NULL	NULL	-	no_errors	GOLM1	HGNC	ENSG00000135052	tier1	-	-	47	0	0.00	3	24	88.89
GP2	0	genome.wustl.edu	37	16	20327307	20327307	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	16	20327307	20327307	A	G	SNP	GP2	ENST00000381362	human	ensembl	74_37	-1	known	missense	c.1481	p.V494A	0.711	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	GP2	HGNC	ENSG00000169347	tier1	-	-	46	0	0.00	30	4	11.76
GPC2	0	genome.wustl.edu	37	7	99767517	99767517	+	RNA	SNP	C	C	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	7	99767517	99767517	C	A	SNP	GPC2	ENST00000471050	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	GPC2	HGNC	ENSG00000213420	tier1	-	-	50	0	0.00	34	27	44.26
GRM8	0	genome.wustl.edu	37	7	126409920	126409920	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	7	126409920	126409920	A	T	SNP	GRM8	ENST00000339582	human	ensembl	74_37	-1	known	missense	c.1356	p.N452K	0.994	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM8	HGNC	ENSG00000179603	tier1	-	-	53	0	0.00	21	6	22.22
HERC3	0	genome.wustl.edu	37	4	89601387	89601387	+	Silent	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	4	89601387	89601387	G	T	SNP	HERC3	ENST00000264345	human	ensembl	74_37	+1	known	silent	c.2340	p.T780	0.995	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_RCC1/BLIP-II,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC3	HGNC	ENSG00000138641				34	0	0.00	33	2	5.71
HIST1H1E	0	genome.wustl.edu	37	6	26156820	26156820	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	6	26156820	26156820	G	T	SNP	HIST1H1E	ENST00000304218	human	ensembl	74_37	+1	known	missense	c.202	p.A68S	1.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1E	HGNC	ENSG00000168298	tier1	-	-	47	0	0.00	44	5	10.20
HIVEP1	0	genome.wustl.edu	37	6	12125356	12125356	+	Silent	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	6	12125356	12125356	C	T	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	silent	c.5328	p.D1776	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	tier1	-	-	16	0	0.00	24	10	29.41
HMCN1	0	genome.wustl.edu	37	1	186092111	186092111	+	Silent	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	186092111	186092111	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	silent	c.12258	p.K4086	0.111	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341	tier1	-	-	30	0	0.00	12	14	53.85
HSD3B2	0	genome.wustl.edu	37	1	119964528	119964528	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	119964528	119964528	A	-	DEL	HSD3B2	ENST00000369416	human	ensembl	74_37	+1	known	frame_shift_del	c.404	p.I136fs	0.264	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_dTDP_dehydrorham_reduct	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_NmrA,pfam_PKS_KR	-	no_errors	HSD3B2	HGNC	ENSG00000203859	tier1			28	0	0.00	29	13	30.95
HUWE1	0	genome.wustl.edu	37	X	53579695	53579695	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	X	53579695	53579695	G	T	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.8654	p.A2885E	0.973	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	tier1	-	-	20	0	0.00	8	3	25.00
IGDCC4	0	genome.wustl.edu	37	15	65686860	65686860	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	15	65686860	65686860	G	T	SNP	IGDCC4	ENST00000352385	human	ensembl	74_37	-1	novel	missense	c.1603	p.L535M	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGDCC4	HGNC	ENSG00000103742	tier1	-	-	25	0	0.00	30	4	11.76
IGSF9B	0	genome.wustl.edu	37	11	133794746	133794746	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	11	133794746	133794746	C	A	SNP	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	missense	c.2088	p.E696D	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9B	HGNC	ENSG00000080854	tier1	-	-	43	0	0.00	7	17	70.83
INTU	0	genome.wustl.edu	37	4	128584699	128584699	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	4	128584699	128584699	A	G	SNP	INTU	ENST00000335251	human	ensembl	74_37	+1	known	missense	c.932	p.Y311C	0.996	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	INTU	HGNC	ENSG00000164066	tier1	-	-	18	0	0.00	2	10	83.33
ITGA2B	0	genome.wustl.edu	37	17	42466775	42466775	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	17	42466775	42466775	G	T	SNP	ITGA2B	ENST00000262407	human	ensembl	74_37	-1	known	missense	c.67	p.P23T	0.963	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961				39	0	0.00	50	3	5.66
ITGAX	0	genome.wustl.edu	37	16	31373951	31373951	+	Silent	SNP	C	C	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	16	31373951	31373951	C	G	SNP	ITGAX	ENST00000268296	human	ensembl	74_37	+1	known	silent	c.1236	p.A412	0.001	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAX	HGNC	ENSG00000140678	tier1	-	-	33	0	0.00	13	5	26.32
ITGB1	0	genome.wustl.edu	37	10	33196044	33196044	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	10	33196044	33196044	T	C	SNP	ITGB1	ENST00000423113	human	ensembl	74_37	-1	known	missense	c.2359	p.I787V	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_cyt_dom,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB1	HGNC	ENSG00000150093	tier1	-	-	34	0	0.00	9	24	72.73
KIAA1731	0	genome.wustl.edu	37	11	93440055	93440055	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	11	93440055	93440055	A	G	SNP	KIAA1731	ENST00000411936	human	ensembl	74_37	+1	known	missense	c.5741	p.D1914G	0.015	NULL	NULL	-	no_errors	KIAA1731	HGNC	ENSG00000166004	tier1	-	-	63	0	0.00	30	4	11.76
KMT2D	0	genome.wustl.edu	37	12	49431645	49431646	+	Frame_Shift_Ins	INS	-	-	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	12	49431645	49431646	-	C	INS	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_ins	c.9494_9493	p.D3165fs	0.987:1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548	tier1			23	0	0.00	9	7	43.75
KPNA1	0	genome.wustl.edu	37	3	122144649	122144649	+	RNA	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	3	122144649	122144649	A	G	SNP	KPNA1	ENST00000470904	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.233	-	-	-	no_errors	KPNA1	HGNC	ENSG00000114030	tier1	-	-	34	0	0.00	13	22	62.86
LINC00302	0	genome.wustl.edu	37	1	152627985	152627985	+	RNA	SNP	G	G	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	152627985	152627985	G	C	SNP	LINC00302	ENST00000444515	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	LINC00302	HGNC	ENSG00000176075	tier1	-	-	29	0	0.00	16	6	27.27
LINC00623	0	genome.wustl.edu	37	1	149581234	149581235	+	RNA	INS	-	-	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	149581234	149581235	-	T	INS	LINC00623	ENST00000598569	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.005	-	-	-	no_errors	RP11-353N4.6	Clone_based_vega_gene	ENSG00000269501	tier1			31	0	0.00	39	4	9.30
LMAN2L	0	genome.wustl.edu	37	2	97373133	97373133	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	97373133	97373133	T	A	SNP	LMAN2L	ENST00000377079	human	ensembl	74_37	-1	known	missense	c.940	p.T314S	0.953	NULL	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	-	no_errors	LMAN2L	HGNC	ENSG00000114988	tier1	-	-	29	0	0.00	17	10	37.04
LMNB2	0	genome.wustl.edu	37	19	2434295	2434295	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	19	2434295	2434295	C	G	SNP	LMNB2	ENST00000325327	human	ensembl	74_37	-1	known	missense	c.1200	p.E400D	1.000	pfam_IF	pfam_IF,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNB2	HGNC	ENSG00000176619	tier1	-	-	30	0	0.00	19	15	44.12
LOC100131347	0	genome.wustl.edu	37	17	37237471	37237471	+	RNA	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	17	37237471	37237471	T	C	SNP	LOC100131347	ENST00000583447	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2206N4.4	Clone_based_vega_gene	ENSG00000263818	tier1	-	-	26	0	0.00	10	5	33.33
LOC101927343	0	genome.wustl.edu	37	8	104258475	104258475	+	RNA	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	8	104258475	104258475	G	T	SNP	LOC101927343	ENST00000519801	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-318M2.2	Clone_based_vega_gene	ENSG00000247081	tier1	-	-	36	0	0.00	39	4	9.30
LOC440894	0	genome.wustl.edu	37	2	110746139	110746139	+	RNA	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	110746139	110746139	A	G	SNP	LOC440894	ENST00000336905	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.110	-	-	-	no_errors	AC013268.5	Clone_based_vega_gene	ENSG00000204588	tier1	-	-	29	0	0.00	13	16	55.17
LRRC37B	0	genome.wustl.edu	37	17	30374917	30374917	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	17	30374917	30374917	G	T	SNP	LRRC37B	ENST00000341671	human	ensembl	74_37	+1	known	missense	c.2380	p.G794W	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37B	HGNC	ENSG00000185158	tier1	-	-	100	0	0.00	59	39	39.00
MAGEC2	0	genome.wustl.edu	37	X	141291732	141291732	+	Silent	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	X	141291732	141291732	G	A	SNP	MAGEC2	ENST00000247452	human	ensembl	74_37	-1	known	silent	c.42	p.N14	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774	tier1	-	-	19	0	0.00	3	12	80.00
MALAT1	0	genome.wustl.edu	37	11	65271780	65271780	+	RNA	DEL	T	T	-			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	11	65271780	65271780	T	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562	tier1			17	0	0.00	15	4	21.05
MAP2K5	0	genome.wustl.edu	37	15	67923233	67923233	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	15	67923233	67923233	C	G	SNP	MAP2K5	ENST00000178640	human	ensembl	74_37	+1	known	missense	c.553	p.H185D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K5	HGNC	ENSG00000137764	tier1	-	-	28	0	0.00	19	20	51.28
MCC	0	genome.wustl.edu	37	5	112824048	112824049	+	In_Frame_Ins	INS	-	-	GCC			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	5	112824048	112824049	-	GCC	INS	MCC	ENST00000408903	human	ensembl	74_37	-1	putative	in_frame_ins	c.64_63	p.21in_frame_insG	0.854:0.894	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MCC	HGNC	ENSG00000171444	tier1			12	0	0.00	2	3	60.00
MED13L	0	genome.wustl.edu	37	12	116408453	116408453	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	12	116408453	116408453	T	C	SNP	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	missense	c.6013	p.I2005V	1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	tier1	-	-	49	0	0.00	36	50	58.14
MT-CO1	0	genome.wustl.edu	37	MT	7428	7428	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	MT	7428	7428	G	A	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.1525	p.V509M	NULL	superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804	tier1	-	-	32	0	0.00	26	38	59.38
MTHFD2L	0	genome.wustl.edu	37	4	75025854	75025855	+	RNA	INS	-	-	TA			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	4	75025854	75025855	-	TA	INS	MTHFD2L	ENST00000461101	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.147:0.040	-	-	-	no_errors	MTHFD2L	HGNC	ENSG00000163738	tier1			54	0	0.00	74	11	12.94
MTIF2	0	genome.wustl.edu	37	2	55490950	55490950	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	55490950	55490950	G	T	SNP	MTIF2	ENST00000263629	human	ensembl	74_37	-1	known	missense	c.45	p.H15Q	0.008	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,superfamily_TIF_IF2_dom3,superfamily_Transl_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760	tier1	-	-	33	0	0.00	43	4	8.51
MUC4	0	genome.wustl.edu	37	3	195509501	195509501	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	3	195509501	195509501	A	T	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.8950	p.S2984T	0.906	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	197	0	0.00	240	25	9.43
MXD1	0	genome.wustl.edu	37	2	70148870	70148870	+	Nonsense_Mutation	SNP	C	C	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	70148870	70148870	C	G	SNP	MXD1	ENST00000264444	human	ensembl	74_37	+1	known	nonsense	c.176	p.S59*	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MXD1	HGNC	ENSG00000059728	tier1	-	-	77	0	0.00	85	6	6.52
MYO18A	0	genome.wustl.edu	37	17	27448072	27448072	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	17	27448072	27448072	T	C	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	missense	c.1529	p.H510R	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	tier1	-	-	74	0	0.00	33	21	38.89
NASP	0	genome.wustl.edu	37	1	46073323	46073323	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	46073323	46073323	G	A	SNP	NASP	ENST00000402363	human	ensembl	74_37	+1	known	missense	c.746	p.G249E	0.008	NULL	pfam_Tetratricopeptide_SHNi-TPR_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NASP	HGNC	ENSG00000132780				25	0	0.00	18	2	10.00
NCKAP5L	0	genome.wustl.edu	37	12	50186300	50186300	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	12	50186300	50186300	C	G	SNP	NCKAP5L	ENST00000335999	human	ensembl	74_37	-1	known	missense	c.3721	p.A1241P	1.000	NULL	NULL	-	no_errors	NCKAP5L	HGNC	ENSG00000167566				30	0	0.00	31	4	11.43
NEFM	0	genome.wustl.edu	37	8	24775457	24775457	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	8	24775457	24775457	G	T	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	missense	c.2089	p.G697W	0.000	NULL	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				21	0	0.00	34	3	8.11
NF1	0	genome.wustl.edu	37	17	29554303	29554303	+	Silent	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	17	29554303	29554303	C	T	SNP	NF1	ENST00000358273	human	ensembl	74_37	+1	known	silent	c.2319	p.N773	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	tier1	-	-	29	0	0.00	9	12	57.14
NFE2L2	0	genome.wustl.edu	37	2	178098945	178098945	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	178098945	178098945	G	C	SNP	NFE2L2	ENST00000397062	human	ensembl	74_37	-1	known	missense	c.100	p.R34G	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,superfamily_Serpin_dom,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L2	HGNC	ENSG00000116044	tier1	-	-	48	0	0.00	18	20	52.63
NNT	0	genome.wustl.edu	37	5	43653133	43653133	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	5	43653133	43653133	G	T	SNP	NNT	ENST00000264663	human	ensembl	74_37	+1	known	missense	c.1877	p.G626V	1.000	pfam_NADH_DH_b	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992	tier1	-	-	55	0	0.00	64	4	5.88
NPAP1	0	genome.wustl.edu	37	15	24924081	24924081	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	15	24924081	24924081	A	C	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.3067	p.S1023R	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823	tier1	-	-	35	0	0.00	18	5	21.74
NPRL3	0	genome.wustl.edu	37	16	136688	136688	+	RNA	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	16	136688	136688	C	T	SNP	NPRL3	ENST00000405960	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NPRL3	HGNC	ENSG00000103148	tier1	-	-	23	0	0.00	10	17	62.96
NSMF	0	genome.wustl.edu	37	9	140346852	140346852	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	9	140346852	140346852	C	G	SNP	NSMF	ENST00000371475	human	ensembl	74_37	-1	known	missense	c.1201	p.G401R	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	NSMF	HGNC	ENSG00000165802	tier1	-	-	33	0	0.00	24	13	35.14
NTNG1	0	genome.wustl.edu	37	1	107961248	107961248	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	107961248	107961248	G	T	SNP	NTNG1	ENST00000370061	human	ensembl	74_37	+1	known	missense	c.1134	p.E378D	1.000	NULL	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631	tier1	-	-	22	0	0.00	16	13	44.83
NUDCD1	0	genome.wustl.edu	37	8	110305659	110305659	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	8	110305659	110305659	A	G	SNP	NUDCD1	ENST00000239690	human	ensembl	74_37	-1	known	missense	c.554	p.L185P	1.000	NULL	pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	NUDCD1	HGNC	ENSG00000120526	tier1	-	-	31	0	0.00	33	5	13.16
NUFIP1	0	genome.wustl.edu	37	13	45523975	45523975	+	Splice_Site	SNP	T	T	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	13	45523975	45523975	T	A	SNP	NUFIP1	ENST00000379161	human	ensembl	74_37	-1	known	splice_site	c.1022-2	e8-2	1.000	-	-	-	no_errors	NUFIP1	HGNC	ENSG00000083635				70	0	0.00	52	5	8.77
OR10G7	0	genome.wustl.edu	37	11	123909033	123909033	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	11	123909033	123909033	G	A	SNP	OR10G7	ENST00000330487	human	ensembl	74_37	-1	known	missense	c.676	p.R226W	0.032	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G7	HGNC	ENSG00000182634	tier1	rs150421981	-	136	0	0.00	30	62	66.67
OR11A1	0	genome.wustl.edu	37	6	29394522	29394522	+	Silent	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	6	29394522	29394522	A	G	SNP	OR11A1	ENST00000377147	human	ensembl	74_37	-1	known	silent	c.897	p.H299	0.645	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR11A1	HGNC	ENSG00000204694	tier1	-	-	24	0	0.00	9	12	57.14
OXNAD1	0	genome.wustl.edu	37	3	16312569	16312569	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	3	16312569	16312569	C	T	SNP	OXNAD1	ENST00000544043	human	ensembl	74_37	+1	known	missense	c.164	p.T55I	0.033	NULL	pfam_OxRdtase_FAD/NAD-bd,pfam_Fe_red_NAD-bd_6,superfamily_Riboflavin_synthase-like_b-brl,prints_Phe_hydroxylase,prints_NADH-Cyt_B5_reductase	-	no_errors	OXNAD1	HGNC	ENSG00000154814	tier1	-	-	50	0	0.00	5	18	78.26
PCDHB4	0	genome.wustl.edu	37	5	140502263	140502263	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	5	140502263	140502263	G	T	SNP	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	missense	c.683	p.R228L	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818				27	0	0.00	20	2	9.09
PDCD2	0	genome.wustl.edu	37	6	170892195	170892195	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	6	170892195	170892195	A	G	SNP	PDCD2	ENST00000541970	human	ensembl	74_37	-1	known	missense	c.608	p.M203T	0.000	pfam_PDCD2_C	pfam_PDCD2_C,pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	PDCD2	HGNC	ENSG00000071994	tier1	-	-	30	0	0.00	5	30	85.71
PHF20L1	0	genome.wustl.edu	37	8	133806767	133806767	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	8	133806767	133806767	G	-	DEL	PHF20L1	ENST00000486199	human	ensembl	74_37	+1	known	frame_shift_del	c.195	p.L65fs	0.999	smart_Tudor,smart_Tudor-like_plant	pfam_DUF3776,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292	tier1			51	0	0.00	45	56	55.45
PHIP	0	genome.wustl.edu	37	6	79698018	79698018	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	6	79698018	79698018	G	T	SNP	PHIP	ENST00000275034	human	ensembl	74_37	-1	known	missense	c.2368	p.Q790K	0.946	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	tier1	-	-	64	0	0.00	14	14	50.00
PKD1L1	0	genome.wustl.edu	37	7	47955185	47955186	+	Frame_Shift_Ins	INS	-	-	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	7	47955185	47955186	0	A	INS	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	frame_shift_ins	c.1072_1071	p.H357fs	0.003:0.006	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				22	0	0.00	11	4	26.67
PLEKHG6	0	genome.wustl.edu	37	12	6427985	6427985	+	Silent	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	12	6427985	6427985	G	A	SNP	PLEKHG6	ENST00000011684	human	ensembl	74_37	+1	known	silent	c.1350	p.K450	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG6	HGNC	ENSG00000008323	tier1	-	-	52	0	0.00	39	22	36.07
POLD2	0	genome.wustl.edu	37	7	44156828	44156828	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	7	44156828	44156828	A	T	SNP	POLD2	ENST00000406581	human	ensembl	74_37	-1	known	missense	c.485	p.F162Y	0.003	NULL	pfam_DNA_pol_alpha/epsilon_bsu	-	no_errors	POLD2	HGNC	ENSG00000106628				35	0	0.00	36	3	7.69
POP1	0	genome.wustl.edu	37	8	99139945	99139945	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	8	99139945	99139945	G	T	SNP	POP1	ENST00000349693	human	ensembl	74_37	+1	known	missense	c.265	p.A89S	1.000	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356	tier1	-	-	38	0	0.00	38	4	9.52
POTEC	0	genome.wustl.edu	37	18	14542753	14542753	+	Silent	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	18	14542753	14542753	C	T	SNP	POTEC	ENST00000358970	human	ensembl	74_37	-1	known	silent	c.393	p.P131	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEC	HGNC	ENSG00000183206	tier1	-	-	191	0	0.00	110	37	25.17
POTEG	0	genome.wustl.edu	37	14	19574339	19574339	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	14	19574339	19574339	G	T	SNP	POTEG	ENST00000409832	human	ensembl	74_37	+1	known	nonsense	c.1396	p.E466*	0.005	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEG	HGNC	ENSG00000222036	tier1	-	-	17	0	0.00	7	6	46.15
POTEH-AS1	0	genome.wustl.edu	37	22	16278128	16278128	+	RNA	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	22	16278128	16278128	A	G	SNP	POTEH-AS1	ENST00000422014	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.230	-	-	-	no_errors	POTEH-AS1	HGNC	ENSG00000236666	tier1	rs199670027	-	13	0	0.00	5	3	37.50
PPFIA3	0	genome.wustl.edu	37	19	49652529	49652529	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	19	49652529	49652529	G	A	SNP	PPFIA3	ENST00000334186	human	ensembl	74_37	+1	known	missense	c.3301	p.E1101K	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380	tier1	-	-	49	0	0.00	29	9	23.68
PRPF3	0	genome.wustl.edu	37	1	150300856	150300856	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	150300856	150300856	G	T	SNP	PRPF3	ENST00000324862	human	ensembl	74_37	+1	known	missense	c.354	p.E118D	1.000	NULL	pfam_Pre-mRNA_splic_Prp3,pfam_DUF1115,pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	PRPF3	HGNC	ENSG00000117360	tier1	-	-	44	0	0.00	49	4	7.55
PRR16	0	genome.wustl.edu	37	5	120022338	120022338	+	Silent	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	5	120022338	120022338	G	T	SNP	PRR16	ENST00000407149	human	ensembl	74_37	+1	known	silent	c.849	p.V283	1.000	NULL	NULL	-	no_errors	PRR16	HGNC	ENSG00000184838				26	0	0.00	22	2	8.33
PTCH1	0	genome.wustl.edu	37	9	98242324	98242324	+	Nonsense_Mutation	SNP	T	T	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	9	98242324	98242324	T	A	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	nonsense	c.994	p.R332*	0.596	tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	tier1	-	-	28	0	0.00	6	24	80.00
PTPN14	0	genome.wustl.edu	37	1	214705746	214705746	+	RNA	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	214705746	214705746	A	G	SNP	PTPN14	ENST00000491277	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.954	-	-	-	no_errors	PTPN14	HGNC	ENSG00000152104	tier1	-	-	37	0	0.00	18	17	48.57
PTPRK	0	genome.wustl.edu	37	6	128718824	128718824	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	6	128718824	128718824	G	T	SNP	PTPRK	ENST00000392449	human	ensembl	74_37	-1	known	nonsense	c.228	p.Y76*	0.983	NULL	NULL	-	no_errors	PTPRK	HGNC	ENSG00000152894	tier1	-	-	26	0	0.00	16	4	20.00
PTPRO	0	genome.wustl.edu	37	12	15734634	15734634	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	12	15734634	15734634	C	T	SNP	PTPRO	ENST00000281171	human	ensembl	74_37	+1	known	missense	c.3154	p.P1052S	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490	tier1	-	-	33	0	0.00	32	6	15.79
PTPRZ1	0	genome.wustl.edu	37	7	121650743	121650743	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	7	121650743	121650743	C	A	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	missense	c.1643	p.S548Y	0.001	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				45	0	0.00	23	2	8.00
RACGAP1	0	genome.wustl.edu	37	12	50398047	50398047	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	12	50398047	50398047	T	C	SNP	RACGAP1	ENST00000312377	human	ensembl	74_37	-1	known	missense	c.466	p.I156V	1.000	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,superfamily_Regulat_G_prot_signal_superfam,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	RACGAP1	HGNC	ENSG00000161800	tier1	-	-	28	0	0.00	20	11	35.48
RBAK	0	genome.wustl.edu	37	7	5104863	5104863	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	7	5104863	5104863	G	C	SNP	RBAK	ENST00000353796	human	ensembl	74_37	+1	known	missense	c.1776	p.E592D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	RBAK	HGNC	ENSG00000146587	tier1	-	-	21	0	0.00	16	9	36.00
REV3L	0	genome.wustl.edu	37	6	111694879	111694879	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	6	111694879	111694879	T	C	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.4679	p.N1560S	0.961	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	tier1	-	-	85	0	0.00	52	6	10.34
RGPD4	0	genome.wustl.edu	37	2	108489085	108489085	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	108489085	108489085	G	T	SNP	RGPD4	ENST00000354986	human	ensembl	74_37	+1	known	missense	c.4625	p.G1542V	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	tier1	-	-	30	0	0.00	27	8	22.86
RMND5B	0	genome.wustl.edu	37	5	177565148	177565148	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	5	177565148	177565148	G	T	SNP	RMND5B	ENST00000313386	human	ensembl	74_37	+1	known	nonsense	c.28	p.E10*	1.000	NULL	smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RMND5B	HGNC	ENSG00000145916	tier1	-	-	36	0	0.00	14	15	51.72
RNF169	0	genome.wustl.edu	37	11	74546844	74546844	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	11	74546844	74546844	G	A	SNP	RNF169	ENST00000299563	human	ensembl	74_37	+1	known	missense	c.1196	p.G399D	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF169	HGNC	ENSG00000166439	tier1	-	-	41	0	0.00	51	13	20.31
RPLP0P2	0	genome.wustl.edu	37	11	61404336	61404336	+	RNA	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	11	61404336	61404336	G	A	SNP	RPLP0P2	ENST00000496593	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPLP0P2	HGNC	ENSG00000243742				45	0	0.00	29	3	9.38
RPP38	0	genome.wustl.edu	37	10	15145535	15145535	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	10	15145535	15145535	A	T	SNP	RPP38	ENST00000378197	human	ensembl	74_37	+1	known	missense	c.222	p.K74N	0.000	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	RPP38	HGNC	ENSG00000152464				11	0	0.00	16	3	15.79
RUNDC1	0	genome.wustl.edu	37	17	41143344	41143344	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	17	41143344	41143344	G	T	SNP	RUNDC1	ENST00000361677	human	ensembl	74_37	+1	known	missense	c.1453	p.G485C	1.000	pfam_Run,pfscan_Run	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC1	HGNC	ENSG00000198863				33	0	0.00	32	3	8.57
SACS	0	genome.wustl.edu	37	13	23912397	23912397	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	13	23912397	23912397	T	C	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.5618	p.Y1873C	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	tier1	-	-	20	0	0.00	5	13	72.22
SCLT1	0	genome.wustl.edu	37	4	129858002	129858002	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	4	129858002	129858002	C	A	SNP	SCLT1	ENST00000281142	human	ensembl	74_37	-1	known	missense	c.1637	p.S546I	1.000	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466				39	0	0.00	20	3	13.04
SEMA3F	0	genome.wustl.edu	37	3	50222050	50222050	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	3	50222050	50222050	C	A	SNP	SEMA3F	ENST00000002829	human	ensembl	74_37	+1	known	missense	c.1259	p.S420Y	0.998	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3F	HGNC	ENSG00000001617	tier1	-	-	55	0	0.00	3	22	88.00
SEMA6C	0	genome.wustl.edu	37	1	151105028	151105028	+	Silent	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	151105028	151105028	G	A	SNP	SEMA6C	ENST00000368913	human	ensembl	74_37	-1	known	silent	c.2821	p.L941	0.997	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6C	HGNC	ENSG00000143434	tier1	-	-	63	0	0.00	33	30	47.62
SLC14A1	0	genome.wustl.edu	37	18	43310429	43310429	+	Silent	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	18	43310429	43310429	G	A	SNP	SLC14A1	ENST00000415427	human	ensembl	74_37	+1	known	silent	c.312	p.Q104	1.000	NULL	pfam_Urea_transporter	-	no_errors	SLC14A1	HGNC	ENSG00000141469	tier1	-	-	21	0	0.00	12	5	29.41
SLC38A7	0	genome.wustl.edu	37	16	58701331	58701331	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	16	58701331	58701331	G	A	SNP	SLC38A7	ENST00000564100	human	ensembl	74_37	-1	putative	missense	c.944	p.A315V	1.000	NULL	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A7	HGNC	ENSG00000103042	tier1	-	-	26	0	0.00	22	6	21.43
SLC6A18	0	genome.wustl.edu	37	5	1238137	1238137	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	5	1238137	1238137	G	C	SNP	SLC6A18	ENST00000324642	human	ensembl	74_37	+1	known	missense	c.694	p.G232R	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A18	HGNC	ENSG00000164363	tier1	-	-	33	0	0.00	20	34	62.96
SMCHD1	0	genome.wustl.edu	37	18	2688439	2688439	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	18	2688439	2688439	A	G	SNP	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	missense	c.686	p.N229S	1.000	superfamily_HATPase_ATP-bd	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	tier1	-	-	56	0	0.00	22	23	51.11
SMG7	0	genome.wustl.edu	37	1	183506344	183506344	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	183506344	183506344	A	G	SNP	SMG7	ENST00000507469	human	ensembl	74_37	+1	known	missense	c.1228	p.I410V	0.999	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698	tier1	-	-	84	0	0.00	49	16	24.62
SNRPN	0	genome.wustl.edu	37	15	25219552	25219552	+	RNA	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	15	25219552	25219552	G	A	SNP	SNRPN	ENST00000553597	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	SNRPN	HGNC	ENSG00000128739	tier1	-	-	75	0	0.00	48	17	26.15
SRPK1	0	genome.wustl.edu	37	6	35810356	35810356	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	6	35810356	35810356	T	C	SNP	SRPK1	ENST00000373825	human	ensembl	74_37	-1	known	missense	c.1646	p.Y549C	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK1	HGNC	ENSG00000096063	tier1	-	-	12	0	0.00	12	5	29.41
SV2C	0	genome.wustl.edu	37	5	75428155	75428155	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	5	75428155	75428155	G	A	SNP	SV2C	ENST00000502798	human	ensembl	74_37	+1	known	missense	c.580	p.G194S	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2C	HGNC	ENSG00000122012	tier1	-	-	47	0	0.00	8	30	78.95
TAF5	0	genome.wustl.edu	37	10	105147814	105147814	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	10	105147814	105147814	A	G	SNP	TAF5	ENST00000369839	human	ensembl	74_37	+1	known	missense	c.2237	p.D746G	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TAF5	HGNC	ENSG00000148835	tier1	-	-	32	0	0.00	6	22	78.57
TANK	0	genome.wustl.edu	37	2	162036193	162036193	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	162036193	162036193	A	T	SNP	TANK	ENST00000259075	human	ensembl	74_37	+1	known	missense	c.20	p.E7V	1.000	NULL	NULL	-	no_errors	TANK	HGNC	ENSG00000136560	tier1	-	-	34	0	0.00	21	20	48.78
TAS1R3	0	genome.wustl.edu	37	1	1266824	1266824	+	Silent	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	1266824	1266824	G	T	SNP	TAS1R3	ENST00000339381	human	ensembl	74_37	+1	known	silent	c.99	p.G33	0.998	superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R3	HGNC	ENSG00000169962	tier1	-	-	34	0	0.00	24	10	29.41
TAS2R4	0	genome.wustl.edu	37	7	141478419	141478419	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	7	141478419	141478419	C	G	SNP	TAS2R4	ENST00000247881	human	ensembl	74_37	+1	known	missense	c.131	p.S44C	0.980	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R4	HGNC	ENSG00000127364	tier1	-	-	62	0	0.00	32	4	11.11
TBC1D26	0	genome.wustl.edu	37	17	15641610	15641610	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	17	15641610	15641610	A	G	SNP	TBC1D26	ENST00000437605	human	ensembl	74_37	+1	known	missense	c.296	p.Y99C	0.413	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D26	HGNC	ENSG00000214946				50	0	0.00	71	4	5.33
TDRD3	0	genome.wustl.edu	37	13	61103130	61103130	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	13	61103130	61103130	G	A	SNP	TDRD3	ENST00000535286	human	ensembl	74_37	+1	known	missense	c.1771	p.V591I	0.961	NULL	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544	tier1	-	-	27	0	0.00	8	22	70.97
TDRD9	0	genome.wustl.edu	37	14	104457550	104457550	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	14	104457550	104457550	T	A	SNP	TDRD9	ENST00000409874	human	ensembl	74_37	+1	known	missense	c.1169	p.V390E	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TDRD9	HGNC	ENSG00000156414	tier1	-	-	73	0	0.00	98	12	10.81
TECRL	0	genome.wustl.edu	37	4	65145912	65145912	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	4	65145912	65145912	T	C	SNP	TECRL	ENST00000381210	human	ensembl	74_37	-1	known	missense	c.970	p.I324V	0.777	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	TECRL	HGNC	ENSG00000205678	tier1	-	-	31	0	0.00	12	15	55.56
TFR2	0	genome.wustl.edu	37	7	100218538	100218538	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	7	100218538	100218538	A	G	SNP	TFR2	ENST00000223051	human	ensembl	74_37	-1	known	missense	c.2348	p.L783P	1.000	pfam_TFR-like_dimer_dom,superfamily_TFR-like_dimer_dom	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFR2	HGNC	ENSG00000106327	tier1	-	-	46	0	0.00	73	5	6.41
THSD7B	0	genome.wustl.edu	37	2	138320891	138320891	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	138320891	138320891	G	T	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	missense	c.3248	p.R1083L	0.983	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	tier1	-	-	35	0	0.00	16	10	38.46
TLR1	0	genome.wustl.edu	37	4	38798859	38798859	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	4	38798859	38798859	G	C	SNP	TLR1	ENST00000308979	human	ensembl	74_37	-1	known	missense	c.1594	p.L532V	0.861	pirsf_Toll-like_receptor,smart_Cys-rich_flank_reg_C	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125	tier1	-	-	83	0	0.00	19	67	77.91
TMCC1	0	genome.wustl.edu	37	3	129547076	129547076	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	3	129547076	129547076	C	T	SNP	TMCC1	ENST00000393238	human	ensembl	74_37	-1	known	missense	c.146	p.G49D	1.000	NULL	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765	tier1	-	-	46	0	0.00	82	14	14.58
TMEM144	0	genome.wustl.edu	37	4	159156622	159156622	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	4	159156622	159156622	G	T	SNP	TMEM144	ENST00000296529	human	ensembl	74_37	+1	known	missense	c.528	p.W176C	1.000	pfam_DUF1632_TMEM144	pfam_DUF1632_TMEM144,pfam_Sugar_transport	-	no_errors	TMEM144	HGNC	ENSG00000164124				53	0	0.00	43	3	6.52
TMIGD1	0	genome.wustl.edu	37	17	28656289	28656289	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	17	28656289	28656289	G	A	SNP	TMIGD1	ENST00000328886	human	ensembl	74_37	-1	known	missense	c.341	p.S114L	0.916	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	TMIGD1	HGNC	ENSG00000182271	tier1	-	-	45	0	0.00	29	10	25.64
TNR	0	genome.wustl.edu	37	1	175372316	175372316	+	Silent	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	1	175372316	175372316	G	A	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	silent	c.936	p.C312	0.652	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	tier1	-	-	12	0	0.00	5	9	64.29
TNRC6A	0	genome.wustl.edu	37	16	24815534	24815534	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	16	24815534	24815534	A	T	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.3731	p.H1244L	1.000	superfamily_UBA-like	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	tier1	-	-	21	0	0.00	19	12	38.71
TNRC6A	0	genome.wustl.edu	37	16	24802699	24802699	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	16	24802699	24802699	A	T	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.2736	p.E912D	0.995	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				16	0	0.00	13	3	18.75
TOX2	0	genome.wustl.edu	37	20	42697596	42697596	+	RNA	SNP	C	C	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	20	42697596	42697596	C	A	SNP	TOX2	ENST00000435864	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.630	-	-	-	no_errors	TOX2	HGNC	ENSG00000124191	tier1	-	-	33	0	0.00	19	20	51.28
TP53	0	genome.wustl.edu	37	17	7578370	7578370	+	Splice_Site	SNP	C	C	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	17	7578370	7578370	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.559+1	e4+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	27	0	0.00	3	40	93.02
TP53BP1	0	genome.wustl.edu	37	15	43748729	43748729	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	15	43748729	43748729	G	T	SNP	TP53BP1	ENST00000382044	human	ensembl	74_37	-1	known	missense	c.2077	p.P693T	0.003	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369				27	0	0.00	33	2	5.71
TRAF7	0	genome.wustl.edu	37	16	2225837	2225837	+	Silent	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	16	2225837	2225837	C	T	SNP	TRAF7	ENST00000326181	human	ensembl	74_37	+1	known	silent	c.1629	p.I543	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_TRAF-like,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_Znf_TRAF,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TRAF7	HGNC	ENSG00000131653	tier1	-	-	20	0	0.00	19	12	38.71
UBE2L6	0	genome.wustl.edu	37	11	57322082	57322082	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	11	57322082	57322082	G	T	SNP	UBE2L6	ENST00000287156	human	ensembl	74_37	-1	known	nonsense	c.138	p.Y46*	1.000	pfam_UBQ-conjugat_E2,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2L6	HGNC	ENSG00000156587	tier1	-	-	106	0	0.00	64	32	33.33
UGGT1	0	genome.wustl.edu	37	2	128872722	128872722	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	2	128872722	128872722	C	T	SNP	UGGT1	ENST00000259253	human	ensembl	74_37	+1	known	missense	c.721	p.L241F	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	tier1	-	-	61	0	0.00	33	38	53.52
ZNF134	0	genome.wustl.edu	37	19	58131694	58131694	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	19	58131694	58131694	G	T	SNP	ZNF134	ENST00000396161	human	ensembl	74_37	+1	known	missense	c.207	p.Q69H	0.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF134	HGNC	ENSG00000213762	tier1	-	-	48	0	0.00	22	14	38.89
ZNF274	0	genome.wustl.edu	37	19	58718140	58718140	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	19	58718140	58718140	C	T	SNP	ZNF274	ENST00000326804	human	ensembl	74_37	+1	known	missense	c.310	p.P104S	0.229	NULL	pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF274	HGNC	ENSG00000171606	tier1	-	-	64	0	0.00	31	34	51.52
ZNF385D	0	genome.wustl.edu	37	3	21552422	21552422	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	3	21552422	21552422	T	C	SNP	ZNF385D	ENST00000281523	human	ensembl	74_37	-1	known	missense	c.370	p.K124E	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385D	HGNC	ENSG00000151789	tier1	-	-	153	0	0.00	62	29	31.87
ZNF394	0	genome.wustl.edu	37	7	99091249	99091249	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	7	99091249	99091249	C	G	SNP	ZNF394	ENST00000337673	human	ensembl	74_37	-1	known	missense	c.1589	p.C530S	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF394	HGNC	ENSG00000160908	tier1	-	-	71	0	0.00	44	51	53.68
ZNF543	0	genome.wustl.edu	37	19	57839161	57839161	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	19	57839161	57839161	G	A	SNP	ZNF543	ENST00000321545	human	ensembl	74_37	+1	known	missense	c.331	p.G111R	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF543	HGNC	ENSG00000178229	tier1	-	-	37	0	0.00	21	8	27.59
ZNF99	0	genome.wustl.edu	37	19	22940554	22940554	+	Silent	SNP	A	A	G			TCGA-LN-A49R-01A-11D-A247-09	TCGA-LN-A49R-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7974aaf3-a7cb-40eb-8732-050581665d20	64b8eb74-7f4f-4df6-83c4-84fa94ee7f32	19	22940554	22940554	A	G	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	silent	c.1884	p.T628	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973				24	0	0.00	29	2	6.45
