Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABI1	0	genome.wustl.edu	37	10	27066072	27066072	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	10	27066072	27066072	C	T	SNP	ABI1	ENST00000355394	human	ensembl	74_37	-1	known	silent	c.384	p.A128	0.998	pfam_Abl-interactor_HHR_dom	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI1	HGNC	ENSG00000136754	tier1	-	-	70	0	0.00	49	14	21.88
ACAD11	0	genome.wustl.edu	37	3	132277827	132277827	+	Silent	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	3	132277827	132277827	T	C	SNP	ACAD11	ENST00000264990	human	ensembl	74_37	-1	known	silent	c.2331	p.T777	0.231	NULL	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303	tier1	-	-	91	0	0.00	70	15	17.65
ACSM2A	0	genome.wustl.edu	37	16	20492165	20492165	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	16	20492165	20492165	G	T	SNP	ACSM2A	ENST00000219054	human	ensembl	74_37	+1	known	missense	c.1431	p.E477D	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2A	HGNC	ENSG00000183747	tier1	-	-	94	0	0.00	83	8	8.79
ACTA2	0	genome.wustl.edu	37	10	90701066	90701066	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	10	90701066	90701066	C	T	SNP	ACTA2	ENST00000224784	human	ensembl	74_37	-1	known	missense	c.536	p.R179H	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTA2	HGNC	ENSG00000107796	tier1	-	-	86	0	0.00	51	10	16.39
ADAM12	0	genome.wustl.edu	37	10	127708387	127708387	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	10	127708387	127708387	C	T	SNP	ADAM12	ENST00000368679	human	ensembl	74_37	-1	known	missense	c.2546	p.C849Y	0.000	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM12	HGNC	ENSG00000148848				44	0	0.00	34	3	8.11
AGL	0	genome.wustl.edu	37	1	100361905	100361905	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	100361905	100361905	G	C	SNP	AGL	ENST00000294724	human	ensembl	74_37	+1	known	missense	c.3323	p.R1108T	1.000	pfam_AGL/Gdb1,superfamily_6-hairpin_glycosidase-like,tigrfam_Glycogen_debranch_met	pfam_AGL/Gdb1,superfamily_6-hairpin_glycosidase-like,superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	-	no_errors	AGL	HGNC	ENSG00000162688				82	0	0.00	65	4	5.80
AHNAK	0	genome.wustl.edu	37	11	62290215	62290215	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	11	62290215	62290215	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.11674	p.D3892N	0.854	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	tier1	-	-	142	0	0.00	107	6	5.31
AKAP11	0	genome.wustl.edu	37	13	42876108	42876108	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	13	42876108	42876108	G	T	SNP	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	missense	c.3226	p.A1076S	0.819	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	tier1	-	-	54	0	0.00	37	4	9.76
AKNA	0	genome.wustl.edu	37	9	117139229	117139229	+	Silent	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	9	117139229	117139229	T	C	SNP	AKNA	ENST00000307564	human	ensembl	74_37	-1	known	silent	c.858	p.R286	0.061	NULL	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948	tier1	-	-	34	0	0.00	13	7	35.00
ALKBH5	0	genome.wustl.edu	37	17	18110203	18110203	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	18110203	18110203	A	T	SNP	ALKBH5	ENST00000399138	human	ensembl	74_37	+1	known	missense	c.926	p.D309V	1.000	NULL	NULL	-	no_errors	ALKBH5	HGNC	ENSG00000091542	tier1	-	-	52	0	0.00	25	6	19.35
ANKRD18B	0	genome.wustl.edu	37	9	33548488	33548488	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	9	33548488	33548488	C	G	SNP	ANKRD18B	ENST00000290943	human	ensembl	74_37	+1	known	missense	c.1516	p.L506V	0.996	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD18B	HGNC	ENSG00000230453	tier1	-	-	71	0	0.00	43	30	41.10
AQP12A	0	genome.wustl.edu	37	2	241631539	241631539	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	241631539	241631539	G	A	SNP	AQP12A	ENST00000429564	human	ensembl	74_37	+1	known	missense	c.208	p.D70N	0.991	superfamily_Aquaporin-like,pirsf_Aquaporin_11/12	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12,prints_MIP	-	no_errors	AQP12A	HGNC	ENSG00000184945				68	0	0.00	48	3	5.88
ARHGAP33	0	genome.wustl.edu	37	19	36270045	36270045	+	RNA	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	19	36270045	36270045	C	T	SNP	ARHGAP33	ENST00000221905	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ARHGAP33	HGNC	ENSG00000004777	tier1	-	-	30	0	0.00	13	6	31.58
ARHGEF9	0	genome.wustl.edu	37	X	62875450	62875450	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	X	62875450	62875450	C	G	SNP	ARHGEF9	ENST00000253401	human	ensembl	74_37	-1	known	missense	c.1224	p.K408N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089	tier1	-	-	32	0	0.00	33	4	10.81
ARID1B	0	genome.wustl.edu	37	6	157528050	157528050	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	6	157528050	157528050	C	G	SNP	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	missense	c.5895	p.S1965R	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				44	0	0.00	31	3	8.82
ARSJ	0	genome.wustl.edu	37	4	114823722	114823722	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	4	114823722	114823722	T	C	SNP	ARSJ	ENST00000315366	human	ensembl	74_37	-1	known	missense	c.1508	p.Y503C	0.994	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSJ	HGNC	ENSG00000180801	tier1	-	-	56	0	0.00	61	5	7.58
ARX	0	genome.wustl.edu	37	X	25028418	25028418	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	X	25028418	25028418	C	T	SNP	ARX	ENST00000379044	human	ensembl	74_37	-1	known	missense	c.1078	p.E360K	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom,prints_Antifreeze_1	-	no_errors	ARX	HGNC	ENSG00000004848	tier1	-	-	31	0	0.00	36	6	14.29
ASPA	0	genome.wustl.edu	37	17	3384928	3384928	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	3384928	3384928	G	T	SNP	ASPA	ENST00000263080	human	ensembl	74_37	+1	known	missense	c.268	p.V90L	1.000	pfam_Aste_AspA,pirsf_Aspartoacylase	pfam_Aste_AspA,pirsf_Aspartoacylase	-	no_errors	ASPA	HGNC	ENSG00000108381	tier1	-	-	72	0	0.00	50	4	7.41
ATXN7L1	0	genome.wustl.edu	37	7	105401875	105401875	+	Silent	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	7	105401875	105401875	G	T	SNP	ATXN7L1	ENST00000318724	human	ensembl	74_37	-1	known	silent	c.390	p.I130	0.998	NULL	NULL	-	no_errors	ATXN7L1	HGNC	ENSG00000146776	tier1	-	-	126	0	0.00	132	14	9.59
BCAP29	0	genome.wustl.edu	37	7	107258830	107258830	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	7	107258830	107258830	A	G	SNP	BCAP29	ENST00000379119	human	ensembl	74_37	+1	known	missense	c.827	p.N276S	0.000	NULL	pfam_Bap31	-	no_errors	BCAP29	HGNC	ENSG00000075790	tier1	-	-	53	0	0.00	36	38	51.35
BCAR1	0	genome.wustl.edu	37	16	75271130	75271130	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	16	75271130	75271130	T	C	SNP	BCAR1	ENST00000418647	human	ensembl	74_37	-1	known	missense	c.884	p.Y295C	0.997	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	BCAR1	HGNC	ENSG00000050820	tier1	-	-	52	0	0.00	45	9	16.67
BCL9	0	genome.wustl.edu	37	1	147091780	147091780	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	147091780	147091780	C	G	SNP	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	missense	c.1819	p.P607A	0.998	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	tier1	-	-	109	0	0.00	89	5	5.32
BCOR	0	genome.wustl.edu	37	X	39909246	39909246	+	Splice_Site	SNP	T	T	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	X	39909246	39909246	T	A	SNP	BCOR	ENST00000378463	human	ensembl	74_37	-1	known	splice_site	c.1794-2	e10-2	0.003	-	-	-	no_errors	BCOR	HGNC	ENSG00000183337	tier1	-	-	52	0	0.00	24	27	52.94
C17orf104	0	genome.wustl.edu	37	17	42745202	42745202	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	42745202	42745202	G	T	SNP	C17orf104	ENST00000409122	human	ensembl	74_37	+1	known	missense	c.1923	p.Q641H	0.997	NULL	NULL	-	no_errors	C17orf104	HGNC	ENSG00000180336	tier1	-	-	41	0	0.00	45	4	8.16
C1GALT1	0	genome.wustl.edu	37	7	7278131	7278131	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	7	7278131	7278131	G	C	SNP	C1GALT1	ENST00000223122	human	ensembl	74_37	+1	known	missense	c.466	p.E156Q	1.000	pfam_Fringe-like,pfam_Glyco_trans_31	pfam_Fringe-like,pfam_Glyco_trans_31	-	no_errors	C1GALT1	HGNC	ENSG00000106392	tier1	-	-	52	0	0.00	39	4	9.30
CA7	0	genome.wustl.edu	37	16	66887278	66887278	+	Splice_Site	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	16	66887278	66887278	G	C	SNP	CA7	ENST00000338437	human	ensembl	74_37	+1	known	splice_site	c.673-1	e7-1	1.000	-	-	-	no_errors	CA7	HGNC	ENSG00000168748	tier1	-	-	62	0	0.00	59	5	7.69
CA8	0	genome.wustl.edu	37	8	61178529	61178529	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	8	61178529	61178529	C	T	SNP	CA8	ENST00000317995	human	ensembl	74_37	-1	known	silent	c.372	p.Q124	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA8	HGNC	ENSG00000178538	tier1	-	-	36	0	0.00	20	10	33.33
CACNA1S	0	genome.wustl.edu	37	1	201042678	201042678	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	201042678	201042678	T	C	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	missense	c.2156	p.K719R	1.000	prints_VDCC_L_a1ssu	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	tier1	-	-	36	0	0.00	22	5	18.52
CAPN13	0	genome.wustl.edu	37	2	31010080	31010080	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	31010080	31010080	C	T	SNP	CAPN13	ENST00000295055	human	ensembl	74_37	-1	known	missense	c.112	p.E38K	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN13	HGNC	ENSG00000162949	tier1	-	-	42	0	0.00	38	9	18.75
CARS	0	genome.wustl.edu	37	11	3022364	3022364	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	11	3022364	3022364	G	T	SNP	CARS	ENST00000380525	human	ensembl	74_37	-1	known	missense	c.2476	p.Q826K	0.971	NULL	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS	HGNC	ENSG00000110619				72	0	0.00	38	2	5.00
CCDC102A	0	genome.wustl.edu	37	16	57546752	57546752	+	Silent	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	16	57546752	57546752	G	A	SNP	CCDC102A	ENST00000258214	human	ensembl	74_37	-1	known	silent	c.1554	p.L518	1.000	NULL	NULL	-	no_errors	CCDC102A	HGNC	ENSG00000135736	tier1	-	-	61	0	0.00	50	6	10.71
CCDC113	0	genome.wustl.edu	37	16	58287930	58287930	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	16	58287930	58287930	G	A	SNP	CCDC113	ENST00000219299	human	ensembl	74_37	+1	known	missense	c.257	p.R86Q	0.989	NULL	NULL	-	no_errors	CCDC113	HGNC	ENSG00000103021	tier1	-	-	149	0	0.00	92	12	11.54
CCDC30	0	genome.wustl.edu	37	1	43102995	43102995	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	43102995	43102995	G	C	SNP	CCDC30	ENST00000340612	human	ensembl	74_37	+1	known	missense	c.1584	p.K528N	0.975	NULL	NULL	-	no_errors	CCDC30	HGNC	ENSG00000186409				35	0	0.00	57	3	5.00
CCDC83	0	genome.wustl.edu	37	11	85597383	85597383	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	11	85597383	85597383	G	T	SNP	CCDC83	ENST00000280245	human	ensembl	74_37	+1	known	missense	c.484	p.V162F	0.864	NULL	NULL	-	no_errors	CCDC83	HGNC	ENSG00000150676				34	0	0.00	27	2	6.90
CCT5	0	genome.wustl.edu	37	5	10254857	10254857	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	5	10254857	10254857	A	G	SNP	CCT5	ENST00000280326	human	ensembl	74_37	+1	known	missense	c.238	p.M80V	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_epsi	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_epsi	-	no_errors	CCT5	HGNC	ENSG00000150753	tier1	-	-	92	0	0.00	50	27	35.06
CDC37L1	0	genome.wustl.edu	37	9	4697769	4697769	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	9	4697769	4697769	A	G	SNP	CDC37L1	ENST00000381854	human	ensembl	74_37	+1	known	missense	c.637	p.M213V	1.000	pfam_Cdc37_Hsp90-bd	pfam_Cdc37_Hsp90-bd	-	no_errors	CDC37L1	HGNC	ENSG00000106993				52	0	0.00	50	3	5.66
CDC6	0	genome.wustl.edu	37	17	38445741	38445741	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	38445741	38445741	G	C	SNP	CDC6	ENST00000209728	human	ensembl	74_37	+1	known	missense	c.69	p.L23F	0.000	pirsf_Cell_div_Cdc6/18	pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6/18	-	no_errors	CDC6	HGNC	ENSG00000094804	tier1	-	-	84	0	0.00	82	10	10.87
CDH10	0	genome.wustl.edu	37	5	24537678	24537678	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	5	24537678	24537678	C	T	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.337	p.A113T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731	tier1	-	-	83	0	0.00	62	10	13.89
CEL	0	genome.wustl.edu	37	9	135942474	135942474	+	Splice_Site	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	9	135942474	135942474	G	T	SNP	CEL	ENST00000372080	human	ensembl	74_37	+1	known	splice_site	c.787-1	e7-1	0.984	-	-	-	no_errors	CEL	HGNC	ENSG00000170835	tier1	-	-	78	0	0.00	60	4	6.25
CENPO	0	genome.wustl.edu	37	2	25038427	25038427	+	Silent	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	25038427	25038427	G	T	SNP	CENPO	ENST00000260662	human	ensembl	74_37	+1	known	silent	c.396	p.G132	0.972	pfam_CENP-O	pfam_CENP-O	-	no_errors	CENPO	HGNC	ENSG00000138092	tier1	-	-	78	0	0.00	83	8	8.79
CEP135	0	genome.wustl.edu	37	4	56837473	56837473	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	4	56837473	56837473	G	C	SNP	CEP135	ENST00000257287	human	ensembl	74_37	+1	known	missense	c.1148	p.S383T	0.202	NULL	superfamily_Prefoldin,superfamily_EB1_C	-	no_errors	CEP135	HGNC	ENSG00000174799	tier1	-	-	47	0	0.00	30	12	28.57
CEP290	0	genome.wustl.edu	37	12	88474063	88474063	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	12	88474063	88474063	G	A	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	missense	c.5128	p.L1710F	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	tier1	-	-	99	0	0.00	48	5	9.43
CEP290	0	genome.wustl.edu	37	12	88512305	88512305	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	12	88512305	88512305	T	-	DEL	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	frame_shift_del	c.1672	p.I558fs	0.983	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	tier1			57	0	0.00	34	10	22.73
CFB	0	genome.wustl.edu	37	6	31914956	31914956	+	Silent	SNP	C	C	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	6	31914956	31914956	C	A	SNP	CFB	ENST00000556679	human	ensembl	74_37	+1	known	silent	c.1977	p.I659	1.000	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Peptidase_S1,pfam_VWF_A,pfam_Sushi_SCR_CCP,superfamily_Trypsin-like_Pept_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CFB	HGNC	ENSG00000243649				41	0	0.00	16	3	15.79
CHRNA5	0	genome.wustl.edu	37	15	78882187	78882187	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	15	78882187	78882187	A	T	SNP	CHRNA5	ENST00000299565	human	ensembl	74_37	+1	known	missense	c.454	p.I152F	0.976	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA5	HGNC	ENSG00000169684	tier1	-	-	92	0	0.00	70	12	14.63
CLCN2	0	genome.wustl.edu	37	3	184075806	184075806	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	3	184075806	184075806	C	G	SNP	CLCN2	ENST00000265593	human	ensembl	74_37	-1	known	missense	c.559	p.A187P	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl-channel-2	-	no_errors	CLCN2	HGNC	ENSG00000114859	tier1	-	-	34	0	0.00	9	10	52.63
CNTN1	0	genome.wustl.edu	37	12	41337880	41337880	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	12	41337880	41337880	G	T	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	missense	c.1591	p.D531Y	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236	tier1	-	-	51	0	0.00	49	4	7.55
CNTN6	0	genome.wustl.edu	37	3	1363426	1363426	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	3	1363426	1363426	C	A	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.854	p.P285Q	0.998	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				30	0	0.00	25	3	10.71
COL28A1	0	genome.wustl.edu	37	7	7572463	7572463	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	7	7572463	7572463	G	A	SNP	COL28A1	ENST00000399429	human	ensembl	74_37	-1	known	missense	c.44	p.A15V	0.398	NULL	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018	tier1	-	-	13	0	0.00	15	4	21.05
COL2A1	0	genome.wustl.edu	37	12	48380220	48380220	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	12	48380220	48380220	C	T	SNP	COL2A1	ENST00000380518	human	ensembl	74_37	-1	known	missense	c.1426	p.A476T	0.999	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219	tier1	-	-	47	0	0.00	51	9	15.00
COL5A2	0	genome.wustl.edu	37	2	189917478	189917478	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	189917478	189917478	C	T	SNP	COL5A2	ENST00000374866	human	ensembl	74_37	-1	known	silent	c.2712	p.P904	0.998	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262	tier1	-	-	40	0	0.00	32	16	33.33
COMP	0	genome.wustl.edu	37	19	18899660	18899660	+	Silent	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	19	18899660	18899660	G	A	SNP	COMP	ENST00000222271	human	ensembl	74_37	-1	known	silent	c.591	p.C197	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd_dom,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664				31	0	0.00	26	3	10.34
CPED1	0	genome.wustl.edu	37	7	120906460	120906460	+	Silent	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	7	120906460	120906460	G	A	SNP	CPED1	ENST00000310396	human	ensembl	74_37	+1	known	silent	c.2490	p.L830	0.995	NULL	NULL	-	no_errors	CPED1	HGNC	ENSG00000106034				79	0	0.00	51	4	7.27
CSMD2	0	genome.wustl.edu	37	1	34164367	34164367	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	34164367	34164367	A	G	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.3911	p.L1304P	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	tier1	-	-	31	0	0.00	25	8	24.24
CSMD3	0	genome.wustl.edu	37	8	113326823	113326823	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	8	113326823	113326823	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.7384	p.R2462W	1.000	superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	tier1	rs199998952	-	40	0	0.00	39	13	25.00
CTNND1	0	genome.wustl.edu	37	11	57583408	57583408	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	11	57583408	57583408	C	G	SNP	CTNND1	ENST00000399050	human	ensembl	74_37	+1	known	missense	c.2830	p.L944V	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561	tier1	-	-	107	0	0.00	78	6	7.14
CYSLTR2	0	genome.wustl.edu	37	13	49281211	49281211	+	Silent	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	13	49281211	49281211	G	T	SNP	CYSLTR2	ENST00000282018	human	ensembl	74_37	+1	known	silent	c.258	p.L86	0.992	pfam_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_CLT2_recept,prints_Cyst_leuk_rcpt,prints_Protea_act_rcpt	-	no_errors	CYSLTR2	HGNC	ENSG00000152207	tier1	-	-	40	0	0.00	25	3	10.71
DCC	0	genome.wustl.edu	37	18	51025708	51025708	+	Silent	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	18	51025708	51025708	G	C	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	silent	c.3939	p.L1313	1.000	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323	tier1	-	-	104	0	0.00	53	16	23.19
DCHS2	0	genome.wustl.edu	37	4	155226327	155226327	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	4	155226327	155226327	C	G	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.3952	p.E1318Q	0.038	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	tier1	-	-	30	0	0.00	31	6	16.22
DCHS2	0	genome.wustl.edu	37	4	155298454	155298454	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	4	155298454	155298454	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.377	p.R126K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	tier1	-	-	53	0	0.00	42	6	12.50
DEPDC7	0	genome.wustl.edu	37	11	33047376	33047376	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	11	33047376	33047376	A	G	SNP	DEPDC7	ENST00000241051	human	ensembl	74_37	+1	known	missense	c.245	p.N82S	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC7	HGNC	ENSG00000121690	tier1	-	-	83	0	0.00	47	10	17.54
DNAJA3	0	genome.wustl.edu	37	16	4493076	4493076	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	16	4493076	4493076	G	A	SNP	DNAJA3	ENST00000262375	human	ensembl	74_37	+1	known	missense	c.842	p.R281H	0.968	pfam_HSP_DnaJ_Cys-rich_dom,superfamily_HSP_DnaJ_Cys-rich_dom,superfamily_HSP40/DnaJ_pept-bd,pfscan_HSP_DnaJ_Cys-rich_dom	pfam_DnaJ_domain,pfam_DnaJ_C,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_domain,pfscan_DnaJ_domain,pfscan_HSP_DnaJ_Cys-rich_dom,prints_DnaJ_domain	-	no_errors	DNAJA3	HGNC	ENSG00000103423	tier1	-	-	76	0	0.00	89	8	8.25
DNMT3L	0	genome.wustl.edu	37	21	45668946	45668946	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	21	45668946	45668946	C	T	SNP	DNMT3L	ENST00000270172	human	ensembl	74_37	-1	known	missense	c.958	p.A320T	0.035	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	DNMT3L	HGNC	ENSG00000142182				79	0	0.00	51	4	7.27
DPYD	0	genome.wustl.edu	37	1	97771791	97771791	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	97771791	97771791	A	-	DEL	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	frame_shift_del	c.2121	p.F707fs	1.000	pfam_Dihydroorotate_DH_1_2,pfam_tRNA_hU_synthase,tigrfam_Dihydroorotate_DH	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641	tier1			33	0	0.00	36	2	5.26
DRC1	0	genome.wustl.edu	37	2	26653551	26653551	+	RNA	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	26653551	26653551	T	C	SNP	DRC1	ENST00000483675	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DRC1	HGNC	ENSG00000157856	tier1	-	-	88	0	0.00	59	15	20.27
DST	0	genome.wustl.edu	37	6	56426280	56426280	+	Silent	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	6	56426280	56426280	G	C	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	silent	c.14043	p.L4681	1.000	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914	tier1	-	-	79	0	0.00	102	6	5.56
E2F7	0	genome.wustl.edu	37	12	77440035	77440035	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	12	77440035	77440035	C	G	SNP	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	missense	c.612	p.K204N	1.000	pfam_E2F_TDP	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891	tier1	-	-	78	0	0.00	54	5	8.47
ECEL1	0	genome.wustl.edu	37	2	233347866	233347866	+	Silent	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	233347866	233347866	G	T	SNP	ECEL1	ENST00000304546	human	ensembl	74_37	-1	known	silent	c.1530	p.V510	0.037	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551	tier1	-	-	84	0	0.00	57	4	6.56
ECT2L	0	genome.wustl.edu	37	6	139170415	139170415	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	6	139170415	139170415	G	A	SNP	ECT2L	ENST00000367682	human	ensembl	74_37	+1	known	missense	c.913	p.E305K	1.000	NULL	pfam_DH-domain,pfam_F-box_dom,superfamily_DH-domain,superfamily_F-box_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ECT2L	HGNC	ENSG00000203734	tier1	-	-	78	0	0.00	61	5	7.58
EDC4	0	genome.wustl.edu	37	16	67914539	67914539	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	16	67914539	67914539	G	A	SNP	EDC4	ENST00000358933	human	ensembl	74_37	+1	known	missense	c.2177	p.R726H	1.000	NULL	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358	tier1	rs151306360	-	77	0	0.00	60	21	25.61
ENSG00000244327	0	genome.wustl.edu	37	3	142184164	142184164	+	RNA	DEL	A	A	-			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	3	142184164	142184164	A	-	DEL	ENSG00000244327	ENST00000460977	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-383G6.3	Clone_based_vega_gene	ENSG00000244327	tier1			22	0	0.00	23	3	11.54
EPB41L4A	0	genome.wustl.edu	37	5	111481696	111481696	+	Splice_Site	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	5	111481696	111481696	C	T	SNP	EPB41L4A	ENST00000507810	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				80	0	0.00	54	3	5.17
ESYT1	0	genome.wustl.edu	37	12	56536626	56536626	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	12	56536626	56536626	G	A	SNP	ESYT1	ENST00000267113	human	ensembl	74_37	+1	known	missense	c.2926	p.E976K	0.086	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT1	HGNC	ENSG00000139641	tier1	-	-	42	0	0.00	14	3	17.65
F7	0	genome.wustl.edu	37	13	113765088	113765088	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	13	113765088	113765088	C	G	SNP	F7	ENST00000375581	human	ensembl	74_37	+1	known	missense	c.215	p.S72C	0.022	pirsf_Pept_S1A_FX,pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F7	HGNC	ENSG00000057593	tier1	-	-	58	0	0.00	23	7	23.33
FAM149A	0	genome.wustl.edu	37	4	187075717	187075717	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	4	187075717	187075717	G	T	SNP	FAM149A	ENST00000356371	human	ensembl	74_37	+1	known	missense	c.1181	p.R394L	0.000	NULL	pfam_DUF3719	-	no_errors	FAM149A	HGNC	ENSG00000109794				40	0	0.00	54	5	8.47
FAM21C	0	genome.wustl.edu	37	10	46272800	46272800	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	10	46272800	46272800	C	G	SNP	FAM21C	ENST00000374362	human	ensembl	74_37	+1	known	missense	c.2222	p.S741C	0.132	NULL	NULL	-	no_errors	FAM21C	HGNC	ENSG00000172661	tier1	-	-	89	0	0.00	77	19	19.79
FAM53C	0	genome.wustl.edu	37	5	137681156	137681156	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	5	137681156	137681156	G	T	SNP	FAM53C	ENST00000239906	human	ensembl	74_37	+1	known	missense	c.779	p.W260L	1.000	NULL	NULL	-	no_errors	FAM53C	HGNC	ENSG00000120709				41	0	0.00	36	2	5.26
FAT3	0	genome.wustl.edu	37	11	92532190	92532190	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	11	92532190	92532190	T	C	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.6011	p.V2004A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	tier1	-	-	37	0	0.00	25	20	44.44
FCGR2A	0	genome.wustl.edu	37	1	161487943	161487943	+	RNA	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	161487943	161487943	T	C	SNP	FCGR2A	ENST00000461298	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	FCGR2A	HGNC	ENSG00000143226	tier1	-	-	36	0	0.00	35	5	12.50
FHOD1	0	genome.wustl.edu	37	16	67265981	67265981	+	Silent	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	16	67265981	67265981	G	C	SNP	FHOD1	ENST00000258201	human	ensembl	74_37	-1	known	silent	c.2163	p.L721	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD1	HGNC	ENSG00000135723	tier1	-	-	105	0	0.00	93	5	5.10
FRMD4A	0	genome.wustl.edu	37	10	13749049	13749049	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	10	13749049	13749049	T	A	SNP	FRMD4A	ENST00000357447	human	ensembl	74_37	-1	known	missense	c.824	p.H275L	1.000	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	tier1	-	-	60	0	0.00	35	10	22.22
FUNDC2P2	0	genome.wustl.edu	37	2	84518145	84518145	+	RNA	SNP	A	A	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	84518145	84518145	A	C	SNP	FUNDC2P2	ENST00000331369	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FUNDC2P2	HGNC	ENSG00000182814	tier1	-	-	104	0	0.00	86	14	14.00
GBAP1	0	genome.wustl.edu	37	1	155184051	155184051	+	RNA	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	155184051	155184051	G	A	SNP	GBAP1	ENST00000368374	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GBAP1	HGNC	ENSG00000160766	tier1	-	-	32	0	0.00	21	5	19.23
GLUL	0	genome.wustl.edu	37	1	182357713	182357713	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	182357713	182357713	C	T	SNP	GLUL	ENST00000311223	human	ensembl	74_37	-1	known	missense	c.160	p.V54M	0.666	pfam_Gln_synt_beta,superfamily_Gln_synt_beta	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	GLUL	HGNC	ENSG00000135821	tier1	-	-	66	0	0.00	60	10	14.29
GP2	0	genome.wustl.edu	37	16	20335452	20335452	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	16	20335452	20335452	C	T	SNP	GP2	ENST00000381362	human	ensembl	74_37	-1	known	missense	c.221	p.R74Q	1.000	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	GP2	HGNC	ENSG00000169347	tier1	-	-	41	0	0.00	30	24	43.64
GREM1	0	genome.wustl.edu	37	15	33022942	33022942	+	Silent	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	15	33022942	33022942	C	G	SNP	GREM1	ENST00000300177	human	ensembl	74_37	+1	known	silent	c.51	p.T17	0.998	pirsf_Gremlin_precursor	pfam_DAN,smart_Cys_knot_C,pirsf_Gremlin_precursor	-	no_errors	GREM1	HGNC	ENSG00000166923	tier1	-	-	31	0	0.00	15	5	25.00
H2AFJ	0	genome.wustl.edu	37	12	14927628	14927628	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	12	14927628	14927628	A	G	SNP	H2AFJ	ENST00000389078	human	ensembl	74_37	+1	known	missense	c.224	p.K75R	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	H2AFJ	HGNC	ENSG00000246705	tier1	-	-	63	0	0.00	50	4	7.41
HCRTR2	0	genome.wustl.edu	37	6	55142326	55142326	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	6	55142326	55142326	G	T	SNP	HCRTR2	ENST00000370862	human	ensembl	74_37	+1	known	missense	c.911	p.R304L	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_Orexin_rcpt_2,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn,prints_Orexin_rcpt_2,prints_NPY_rcpt	-	no_errors	HCRTR2	HGNC	ENSG00000137252	tier1	-	-	46	0	0.00	52	4	7.14
HDAC9	0	genome.wustl.edu	37	7	18633636	18633636	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	7	18633636	18633636	C	A	SNP	HDAC9	ENST00000441542	human	ensembl	74_37	+1	known	missense	c.648	p.F216L	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC9	HGNC	ENSG00000048052				67	0	0.00	70	4	5.41
HERPUD1	0	genome.wustl.edu	37	16	56977366	56977366	+	RNA	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	16	56977366	56977366	G	A	SNP	HERPUD1	ENST00000570273	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.876	-	-	-	no_errors	HERPUD1	HGNC	ENSG00000051108	tier1	-	-	37	0	0.00	25	4	13.79
HK1	0	genome.wustl.edu	37	10	71144261	71144261	+	RNA	SNP	A	A	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	10	71144261	71144261	A	T	SNP	HK1	ENST00000494253	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HK1	HGNC	ENSG00000156515	tier1	-	-	32	0	0.00	23	12	34.29
HOGA1	0	genome.wustl.edu	37	10	99371273	99371273	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	10	99371273	99371273	C	T	SNP	HOGA1	ENST00000370646	human	ensembl	74_37	+1	known	missense	c.841	p.R281W	0.998	pfam_DapA-like	pfam_DapA-like,prints_DapA-like	-	no_errors	HOGA1	HGNC	ENSG00000241935	tier1	-	-	69	0	0.00	45	11	19.64
HOXB13	0	genome.wustl.edu	37	17	46805780	46805780	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	46805780	46805780	G	T	SNP	HOXB13	ENST00000290295	human	ensembl	74_37	-1	known	missense	c.176	p.P59Q	0.937	pfam_HoxA13_N	pfam_HoxA13_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXB13	HGNC	ENSG00000159184				93	0	0.00	75	4	5.06
HOXD13	0	genome.wustl.edu	37	2	176958115	176958115	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	176958115	176958115	A	G	SNP	HOXD13	ENST00000392539	human	ensembl	74_37	+1	putative	missense	c.497	p.K166R	1.000	pfam_HoxA13_N	pfam_Homeobox_dom,pfam_HoxA13_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXD13	HGNC	ENSG00000128714	tier1	-	-	103	0	0.00	79	6	7.06
HPS5	0	genome.wustl.edu	37	11	18305401	18305401	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	11	18305401	18305401	C	G	SNP	HPS5	ENST00000349215	human	ensembl	74_37	-1	known	missense	c.2999	p.R1000T	0.982	pirsf_BLOC-2_complex_Hps5_subunit	superfamily_WD40_repeat_dom,pirsf_BLOC-2_complex_Hps5_subunit	-	no_errors	HPS5	HGNC	ENSG00000110756	tier1	-	-	75	0	0.00	41	5	10.87
ICT1	0	genome.wustl.edu	37	17	73015819	73015819	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	73015819	73015819	G	A	SNP	ICT1	ENST00000301585	human	ensembl	74_37	+1	known	missense	c.248	p.R83Q	0.997	pfam_Pep_chain_release_fac_I_II	pfam_Pep_chain_release_fac_I_II	-	no_errors	ICT1	HGNC	ENSG00000167862	tier1	-	-	102	0	0.00	84	12	12.50
IDH3G	0	genome.wustl.edu	37	X	153051695	153051695	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	X	153051695	153051695	G	A	SNP	IDH3G	ENST00000217901	human	ensembl	74_37	-1	known	missense	c.1052	p.A351V	0.999	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3G	HGNC	ENSG00000067829	tier1	-	-	17	0	0.00	3	5	62.50
IFIT1	0	genome.wustl.edu	37	10	91162762	91162762	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	10	91162762	91162762	C	G	SNP	IFIT1	ENST00000371804	human	ensembl	74_37	+1	known	missense	c.730	p.L244V	0.058	pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1	HGNC	ENSG00000185745	tier1	-	-	61	0	0.00	42	7	14.29
IL27RA	0	genome.wustl.edu	37	19	14157366	14157366	+	Silent	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	19	14157366	14157366	G	T	SNP	IL27RA	ENST00000263379	human	ensembl	74_37	+1	known	silent	c.1077	p.G359	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998				59	0	0.00	55	4	6.78
INO80B	0	genome.wustl.edu	37	2	74683272	74683272	+	Nonsense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	74683272	74683272	C	G	SNP	INO80B	ENST00000452361	human	ensembl	74_37	+1	known	nonsense	c.413	p.S138*	0.951	NULL	pfam_INO80B_C,pfam_Znf_HIT	-	no_errors	INO80B	HGNC	ENSG00000115274	tier1	-	-	84	0	0.00	70	4	5.41
INTS3	0	genome.wustl.edu	37	1	153746463	153746463	+	RNA	DEL	T	T	-			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	153746463	153746463	T	-	DEL	INTS3	ENST00000476843	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	INTS3	HGNC	ENSG00000143624	tier1			35	0	0.00	28	4	12.50
ITK	0	genome.wustl.edu	37	5	156671337	156671337	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	5	156671337	156671337	T	G	SNP	ITK	ENST00000422843	human	ensembl	74_37	+1	known	missense	c.1298	p.L433R	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_Znf_Btk_motif,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ITK	HGNC	ENSG00000113263	tier1	-	-	63	0	0.00	32	7	17.95
ITPR3	0	genome.wustl.edu	37	6	33653186	33653186	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	6	33653186	33653186	C	T	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	silent	c.5358	p.F1786	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433	tier1	-	-	51	0	0.00	39	5	11.11
IVD	0	genome.wustl.edu	37	15	40703768	40703768	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	15	40703768	40703768	C	T	SNP	IVD	ENST00000487418	human	ensembl	74_37	+1	known	silent	c.574	p.L192	1.000	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	IVD	HGNC	ENSG00000128928	tier1	-	-	78	0	0.00	52	8	13.33
KCTD14	0	genome.wustl.edu	37	11	77727683	77727683	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	11	77727683	77727683	C	T	SNP	KCTD14	ENST00000353172	human	ensembl	74_37	-1	known	missense	c.724	p.E242K	0.001	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD14	HGNC	ENSG00000151364	tier1	-	-	41	0	0.00	26	8	23.53
KCTD8	0	genome.wustl.edu	37	4	44176944	44176944	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	4	44176944	44176944	T	C	SNP	KCTD8	ENST00000360029	human	ensembl	74_37	-1	known	missense	c.1285	p.K429E	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD8	HGNC	ENSG00000183783	tier1	-	-	99	0	0.00	82	6	6.82
KIF26B	0	genome.wustl.edu	37	1	245865807	245865807	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	245865807	245865807	G	T	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	missense	c.6226	p.A2076S	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				48	0	0.00	54	3	5.26
KIFAP3	0	genome.wustl.edu	37	1	169947249	169947249	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	169947249	169947249	C	G	SNP	KIFAP3	ENST00000361580	human	ensembl	74_37	-1	known	missense	c.1874	p.R625T	1.000	superfamily_ARM-type_fold,pfscan_Armadillo	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	KIFAP3	HGNC	ENSG00000075945	tier1	-	-	57	0	0.00	59	8	11.94
KMT2D	0	genome.wustl.edu	37	12	49444573	49444573	+	Frame_Shift_Del	DEL	T	T	-			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	12	49444573	49444573	T	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.2798	p.D933fs	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548	tier1			45	0	0.00	27	8	22.86
LDHAL6A	0	genome.wustl.edu	37	11	18499176	18499176	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	11	18499176	18499176	G	C	SNP	LDHAL6A	ENST00000280706	human	ensembl	74_37	+1	known	missense	c.720	p.E240D	0.998	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHAL6A	HGNC	ENSG00000166800	tier1	-	-	93	0	0.00	60	6	9.09
LEO1	0	genome.wustl.edu	37	15	52258503	52258503	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	15	52258503	52258503	T	C	SNP	LEO1	ENST00000299601	human	ensembl	74_37	-1	known	missense	c.257	p.N86S	1.000	NULL	pfam_Leo1	-	no_errors	LEO1	HGNC	ENSG00000166477	tier1	-	-	63	0	0.00	49	16	24.62
LINC00700	0	genome.wustl.edu	37	10	2056458	2056458	+	RNA	SNP	T	T	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	10	2056458	2056458	T	A	SNP	LINC00700	ENST00000413603	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00700	HGNC	ENSG00000234962	tier1	-	-	76	0	0.00	63	7	10.00
LOC100128006	0	genome.wustl.edu	37	17	12666384	12666384	+	RNA	SNP	C	C	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	12666384	12666384	C	A	SNP	LOC100128006	ENST00000584772	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.696	-	-	-	no_errors	RP11-1090M7.1	Clone_based_vega_gene	ENSG00000265489	tier1	-	-	32	0	0.00	29	8	21.62
LOC100293748	0	genome.wustl.edu	37	1	149265408	149265411	+	RNA	DEL	TTTG	TTTG	-			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	TTTG	TTTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	149265408	149265411	TTTG	-	DEL	LOC100293748	ENST00000325963	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.054:0.053:0.077:0.148	-	-	-	no_errors	RP11-403I13.4	Clone_based_vega_gene	ENSG00000223779	tier1			19	0	0.00	24	5	17.24
LOC100653515	0	genome.wustl.edu	37	17	76887157	76887157	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	76887157	76887157	G	T	SNP	LOC100653515	ENST00000322630	human	ensembl	74_37	-1	putative	missense	c.1429	p.L477M	0.000	NULL	NULL	-	no_errors	DDC8	Uniprot_gn	ENSG00000178404	tier1	-	-	48	0	0.00	63	4	5.97
LOC101929274	0	genome.wustl.edu	37	16	11540490	11540490	+	Silent	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	16	11540490	11540490	G	A	SNP	LOC101929274	ENST00000344649	human	ensembl	74_37	-1	known	silent	c.1527	p.V509	0.994	NULL	NULL	-	no_errors	CTD-3088G3.8	Clone_based_vega_gene	ENSG00000188897	tier1	-	-	54	0	0.00	54	4	6.90
LOC440040	0	genome.wustl.edu	37	11	49597796	49597796	+	RNA	SNP	A	A	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	11	49597796	49597796	A	T	SNP	LOC440040	ENST00000527477	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-707M1.1	Clone_based_vega_gene	ENSG00000205035	tier1	-	-	54	0	0.00	34	8	19.05
LONP1	0	genome.wustl.edu	37	19	5694527	5694527	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	19	5694527	5694527	C	T	SNP	LONP1	ENST00000360614	human	ensembl	74_37	-1	known	missense	c.2191	p.E731K	0.468	superfamily_P-loop_NTPase,tigrfam_Lon_bac/euk-typ	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Prk_AAA_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_P-loop_NTPase,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Lon_bac/euk-typ	-	no_errors	LONP1	HGNC	ENSG00000196365	tier1	-	-	34	0	0.00	12	8	40.00
LRP1B	0	genome.wustl.edu	37	2	141215110	141215110	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	141215110	141215110	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.9736	p.A3246T	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	tier1	-	-	84	0	0.00	47	6	11.32
LRRC43	0	genome.wustl.edu	37	12	122677396	122677396	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	12	122677396	122677396	C	T	SNP	LRRC43	ENST00000339777	human	ensembl	74_37	+1	known	silent	c.1194	p.V398	0.000	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113				66	0	0.00	49	4	7.55
LRRN3	0	genome.wustl.edu	37	7	110764419	110764419	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	7	110764419	110764419	G	C	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	missense	c.1591	p.D531H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114	tier1	-	-	34	0	0.00	37	5	11.90
MAGED1	0	genome.wustl.edu	37	X	51636756	51636756	+	RNA	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	X	51636756	51636756	G	T	SNP	MAGED1	ENST00000470461	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.551	-	-	-	no_errors	MAGED1	HGNC	ENSG00000179222	tier1	-	-	37	0	0.00	37	11	22.92
MAN1C1	0	genome.wustl.edu	37	1	26104684	26104684	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	26104684	26104684	G	T	SNP	MAN1C1	ENST00000374332	human	ensembl	74_37	+1	known	missense	c.1346	p.G449V	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1C1	HGNC	ENSG00000117643	tier1	-	-	43	0	0.00	17	13	43.33
MGAT4A	0	genome.wustl.edu	37	2	99342758	99342758	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	99342758	99342758	G	A	SNP	MGAT4A	ENST00000264968	human	ensembl	74_37	-1	known	missense	c.38	p.A13V	0.991	NULL	pfam_Glyco_transf_54	-	no_errors	MGAT4A	HGNC	ENSG00000071073	tier1	-	-	88	0	0.00	68	18	20.93
MIR3613	0	genome.wustl.edu	37	13	50570574	50570574	+	RNA	DEL	T	T	-			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	13	50570574	50570574	T	-	DEL	MIR3613	ENST00000579844	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR3613	HGNC	ENSG00000264864	tier1			48	0	0.00	26	4	13.33
MIR498	0	genome.wustl.edu	37	19	54177477	54177477	+	RNA	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	19	54177477	54177477	G	A	SNP	MIR498	ENST00000385134	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.080	-	-	-	no_errors	MIR498	HGNC	ENSG00000207869	tier1	-	-	44	0	0.00	20	13	39.39
MMP11	0	genome.wustl.edu	37	22	24122846	24122846	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	22	24122846	24122846	G	A	SNP	MMP11	ENST00000215743	human	ensembl	74_37	+1	known	missense	c.560	p.R187Q	1.000	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP11	HGNC	ENSG00000099953	tier1	-	-	52	0	0.00	27	5	15.62
MMP20	0	genome.wustl.edu	37	11	102496048	102496048	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	11	102496048	102496048	C	T	SNP	MMP20	ENST00000260228	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	1.000	pirsf_Pept_M10A_Metazoans	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP20	HGNC	ENSG00000137674				27	0	0.00	19	4	17.39
MOCS3	0	genome.wustl.edu	37	20	49576374	49576374	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	20	49576374	49576374	C	T	SNP	MOCS3	ENST00000244051	human	ensembl	74_37	+1	known	missense	c.995	p.P332L	0.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_MoeZ_MoeB,pfam_Rhodanese-like_dom,superfamily_Molybdenum_cofac_synth_MoeB,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	MOCS3	HGNC	ENSG00000124217	tier1	-	-	42	0	0.00	34	12	26.09
MOK	0	genome.wustl.edu	37	14	102732205	102732205	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	14	102732205	102732205	C	T	SNP	MOK	ENST00000361847	human	ensembl	74_37	-1	known	missense	c.167	p.R56H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MOK	HGNC	ENSG00000080823	tier1	-	-	63	0	0.00	68	19	21.84
MSTO1	0	genome.wustl.edu	37	1	155582929	155582929	+	Silent	SNP	A	A	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	155582929	155582929	A	G	SNP	MSTO1	ENST00000245564	human	ensembl	74_37	+1	known	silent	c.1188	p.P396	0.769	NULL	pfam_Misato_II_tubulin-like,pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase	-	no_errors	MSTO1	HGNC	ENSG00000125459	tier1	-	-	66	0	0.00	44	10	18.52
MTUS2	0	genome.wustl.edu	37	13	29600389	29600389	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	13	29600389	29600389	G	T	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	missense	c.1584	p.K528N	0.029	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				42	0	0.00	28	5	15.15
MUC21	0	genome.wustl.edu	37	6	30955265	30955265	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	6	30955265	30955265	C	G	SNP	MUC21	ENST00000376296	human	ensembl	74_37	+1	known	missense	c.1313	p.S438C	0.004	NULL	NULL	-	no_errors	MUC21	HGNC	ENSG00000204544	tier1	-	-	108	0	0.00	84	8	8.70
MUSK	0	genome.wustl.edu	37	9	113459655	113459655	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	9	113459655	113459655	C	T	SNP	MUSK	ENST00000374448	human	ensembl	74_37	+1	known	silent	c.537	p.N179	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304				51	0	0.00	54	3	5.26
MYO9B	0	genome.wustl.edu	37	19	17212764	17212764	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	19	17212764	17212764	C	T	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	silent	c.237	p.D79	0.284	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331				30	0	0.00	28	3	9.68
MYO9B	0	genome.wustl.edu	37	19	17316815	17316815	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	19	17316815	17316815	G	A	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	missense	c.5111	p.S1704N	0.989	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331				69	0	0.00	47	3	6.00
NBPF15	0	genome.wustl.edu	37	1	148579636	148579636	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	148579636	148579636	T	C	SNP	NBPF15	ENST00000369187	human	ensembl	74_37	+1	known	missense	c.206	p.F69S	0.009	NULL	pfam_NBPF_dom	-	no_errors	NBPF15	HGNC	ENSG00000243452	tier1	rs200012164	-	33	0	0.00	20	3	13.04
NDST2	0	genome.wustl.edu	37	10	75564538	75564538	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	10	75564538	75564538	C	T	SNP	NDST2	ENST00000309979	human	ensembl	74_37	-1	known	silent	c.1836	p.Q612	0.999	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST2	HGNC	ENSG00000166507	tier1	-	-	71	0	0.00	61	6	8.96
NDUFAF7	0	genome.wustl.edu	37	2	37468805	37468805	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	37468805	37468805	C	T	SNP	NDUFAF7	ENST00000002125	human	ensembl	74_37	+1	known	nonsense	c.493	p.Q165*	1.000	pfam_MidA	pfam_MidA	-	no_errors	NDUFAF7	HGNC	ENSG00000003509	tier1	-	-	43	0	0.00	41	6	12.50
NEK7	0	genome.wustl.edu	37	1	198222262	198222262	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	198222262	198222262	A	T	SNP	NEK7	ENST00000367385	human	ensembl	74_37	+1	known	missense	c.150	p.R50S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK7	HGNC	ENSG00000151414	tier1	-	-	54	0	0.00	37	17	31.48
NKIRAS1	0	genome.wustl.edu	37	3	23942371	23942371	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	3	23942371	23942371	C	T	SNP	NKIRAS1	ENST00000388759	human	ensembl	74_37	-1	known	silent	c.264	p.V88	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	NKIRAS1	HGNC	ENSG00000197885	tier1	-	-	54	0	0.00	53	6	10.17
NLRC3	0	genome.wustl.edu	37	16	3607659	3607659	+	Silent	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	16	3607659	3607659	G	A	SNP	NLRC3	ENST00000448023	human	ensembl	74_37	-1	known	silent	c.2175	p.I725	0.977	smart_Leu-rich_rpt_RNase_inh_sub-typ	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984	tier1	-	-	58	0	0.00	42	8	16.00
NPY1R	0	genome.wustl.edu	37	4	164247644	164247644	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	4	164247644	164247644	C	T	SNP	NPY1R	ENST00000296533	human	ensembl	74_37	-1	known	silent	c.63	p.K21	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_Glucose_rcpt_Git3_N,pfscan_GPCR_Rhodpsn_7TM,prints_NPY1_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY1R	HGNC	ENSG00000164128	tier1	-	-	39	0	0.00	21	4	16.00
NRXN3	0	genome.wustl.edu	37	14	79434617	79434617	+	Silent	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	14	79434617	79434617	T	C	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	silent	c.3037	p.L1013	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	tier1	-	-	84	0	0.00	46	7	13.21
OR6B1	0	genome.wustl.edu	37	7	143701769	143701769	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	7	143701769	143701769	G	A	SNP	OR6B1	ENST00000408922	human	ensembl	74_37	+1	known	missense	c.680	p.C227Y	0.016	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6B1	HGNC	ENSG00000221813	tier1	-	-	62	0	0.00	37	16	30.19
OR6C68	0	genome.wustl.edu	37	12	55886520	55886520	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	12	55886520	55886520	G	A	SNP	OR6C68	ENST00000379662	human	ensembl	74_37	+1	known	missense	c.374	p.R125H	0.990	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR6C68	HGNC	ENSG00000205327	tier1	rs145845899	-	71	0	0.00	45	11	19.64
OSBPL9	0	genome.wustl.edu	37	1	52246895	52246895	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	52246895	52246895	C	T	SNP	OSBPL9	ENST00000371710	human	ensembl	74_37	+1	known	missense	c.1370	p.S457L	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL9	HGNC	ENSG00000117859				67	0	0.00	57	3	5.00
PALM2-AKAP2	0	genome.wustl.edu	37	9	112900341	112900341	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	9	112900341	112900341	G	T	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	missense	c.2517	p.E839D	0.985	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654				19	0	0.00	16	2	11.11
PARP9	0	genome.wustl.edu	37	3	122255181	122255181	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	3	122255181	122255181	C	T	SNP	PARP9	ENST00000360356	human	ensembl	74_37	-1	known	silent	c.2019	p.K673	0.000	pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP9	HGNC	ENSG00000138496	tier1	-	-	70	0	0.00	71	6	7.79
PCDHB10	0	genome.wustl.edu	37	5	140574310	140574310	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	5	140574310	140574310	G	C	SNP	PCDHB10	ENST00000239446	human	ensembl	74_37	+1	known	missense	c.2185	p.V729L	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324	tier1	-	-	133	0	0.00	77	8	9.41
PCSK5	0	genome.wustl.edu	37	9	78973602	78973602	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	9	78973602	78973602	G	T	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	missense	c.5347	p.A1783S	0.270	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	tier1	-	-	52	0	0.00	29	7	19.44
PDP1	0	genome.wustl.edu	37	8	94934978	94934978	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	8	94934978	94934978	G	A	SNP	PDP1	ENST00000396200	human	ensembl	74_37	+1	known	missense	c.766	p.D256N	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PDP1	HGNC	ENSG00000164951				29	0	0.00	33	3	8.33
PI4KA	0	genome.wustl.edu	37	22	21119944	21119944	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	22	21119944	21119944	G	A	SNP	PI4KA	ENST00000255882	human	ensembl	74_37	-1	known	missense	c.2366	p.P789L	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	tier1	-	-	67	0	0.00	32	5	13.51
PLAT	0	genome.wustl.edu	37	8	42038181	42038181	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	8	42038181	42038181	G	T	SNP	PLAT	ENST00000220809	human	ensembl	74_37	-1	known	nonsense	c.912	p.Y304*	0.002	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,pfam_Kringle,pfam_Fibronectin_type1,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PLAT	HGNC	ENSG00000104368				29	0	0.00	15	2	11.76
PLEKHG3	0	genome.wustl.edu	37	14	65210415	65210415	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	14	65210415	65210415	C	T	SNP	PLEKHG3	ENST00000394691	human	ensembl	74_37	+1	known	silent	c.3654	p.V1218	0.001	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822	tier1	-	-	53	0	0.00	33	8	19.51
PLXNA2	0	genome.wustl.edu	37	1	208391109	208391109	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	208391109	208391109	C	T	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	silent	c.159	p.L53	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356	tier1	-	-	58	0	0.00	42	6	12.24
POGZ	0	genome.wustl.edu	37	1	151396497	151396497	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	151396497	151396497	A	G	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	missense	c.1451	p.L484P	0.998	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442	tier1	-	-	76	0	0.00	58	18	23.68
PROB1	0	genome.wustl.edu	37	5	138727840	138727840	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	5	138727840	138727840	C	T	SNP	PROB1	ENST00000434752	human	ensembl	74_37	-1	known	silent	c.2931	p.G977	0.971	NULL	NULL	-	no_errors	PROB1	HGNC	ENSG00000228672				16	0	0.00	3	3	50.00
PRRC1	0	genome.wustl.edu	37	5	126860507	126860507	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	5	126860507	126860507	A	G	SNP	PRRC1	ENST00000512635	human	ensembl	74_37	+1	known	missense	c.388	p.I130V	0.010	NULL	pfam_NTPase/PRRC1	-	no_errors	PRRC1	HGNC	ENSG00000164244	tier1	-	-	97	0	0.00	85	10	10.53
PRSS35	0	genome.wustl.edu	37	6	84234264	84234264	+	Silent	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	6	84234264	84234264	G	T	SNP	PRSS35	ENST00000369700	human	ensembl	74_37	+1	known	silent	c.1104	p.A368	0.007	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	-	no_errors	PRSS35	HGNC	ENSG00000146250	tier1	-	-	33	0	0.00	13	3	18.75
PSPN	0	genome.wustl.edu	37	19	6375764	6375764	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	19	6375764	6375764	C	T	SNP	PSPN	ENST00000245810	human	ensembl	74_37	-1	known	missense	c.97	p.D33N	0.007	NULL	pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	PSPN	HGNC	ENSG00000125650	tier1	-	-	80	0	0.00	42	5	10.64
PTPRM	0	genome.wustl.edu	37	18	8378361	8378361	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	18	8378361	8378361	G	A	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	missense	c.3564	p.M1188I	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	tier1	-	-	64	0	0.00	79	7	8.14
PTPRZ1	0	genome.wustl.edu	37	7	121650691	121650691	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	7	121650691	121650691	G	T	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	missense	c.1591	p.V531L	0.026	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	tier1	-	-	67	0	0.00	28	4	12.50
RAP2C	0	genome.wustl.edu	37	X	131348451	131348451	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	X	131348451	131348451	T	A	SNP	RAP2C	ENST00000342983	human	ensembl	74_37	-1	known	missense	c.297	p.Q99H	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP2C	HGNC	ENSG00000123728	tier1	-	-	34	0	0.00	25	13	34.21
RBBP5	0	genome.wustl.edu	37	1	205068124	205068124	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	205068124	205068124	C	A	SNP	RBBP5	ENST00000264515	human	ensembl	74_37	-1	known	missense	c.1089	p.E363D	1.000	NULL	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RBBP5	HGNC	ENSG00000117222	tier1	-	-	58	0	0.00	35	9	20.45
RCC2	0	genome.wustl.edu	37	1	17747270	17747270	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	17747270	17747270	T	C	SNP	RCC2	ENST00000375433	human	ensembl	74_37	-1	known	missense	c.799	p.M267V	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,prints_Reg_chr_condens,pfscan_Reg_chr_condens	-	no_errors	RCC2	HGNC	ENSG00000179051	tier1	-	-	29	0	0.00	34	5	12.82
RELN	0	genome.wustl.edu	37	7	103151393	103151393	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	7	103151393	103151393	C	T	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.8179	p.D2727N	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	tier1	-	-	64	0	0.00	63	6	8.70
RHCE	0	genome.wustl.edu	37	1	25689023	25689023	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	25689023	25689023	A	G	SNP	RHCE	ENST00000294413	human	ensembl	74_37	-1	known	missense	c.1249	p.F417L	0.995	NULL	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHCE	HGNC	ENSG00000188672	tier1	-	-	57	0	0.00	46	6	11.54
RND2	0	genome.wustl.edu	37	17	41180632	41180632	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	41180632	41180632	C	T	SNP	RND2	ENST00000544533	human	ensembl	74_37	+1	known	missense	c.622	p.R208W	0.984	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND2	HGNC	ENSG00000108830				68	0	0.00	52	3	5.45
RNF148	0	genome.wustl.edu	37	7	122342397	122342397	+	Silent	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	7	122342397	122342397	G	T	SNP	RNF148	ENST00000434824	human	ensembl	74_37	-1	known	silent	c.408	p.G136	1.000	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF148	HGNC	ENSG00000235631	tier1	-	-	99	0	0.00	55	4	6.78
RNF43	0	genome.wustl.edu	37	17	56438273	56438273	+	Silent	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	56438273	56438273	G	A	SNP	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	silent	c.720	p.I240	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375	tier1	-	-	40	0	0.00	43	9	17.31
RNPC3	0	genome.wustl.edu	37	1	104093612	104093612	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	104093612	104093612	A	C	SNP	RNPC3	ENST00000423855	human	ensembl	74_37	+1	known	missense	c.1411	p.I471L	0.999	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RNPC3	HGNC	ENSG00000185946	tier1	-	-	40	0	0.00	19	6	24.00
RP1L1	0	genome.wustl.edu	37	8	10469643	10469643	+	Silent	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	8	10469643	10469643	G	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	silent	c.1965	p.G655	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	tier1	-	-	38	0	0.00	18	4	18.18
RP2	0	genome.wustl.edu	37	X	46696586	46696586	+	Silent	SNP	C	C	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	X	46696586	46696586	C	A	SNP	RP2	ENST00000218340	human	ensembl	74_37	+1	known	silent	c.51	p.P17	0.853	pirsf_Protein_XRP2	pfam_Tubulin-bd_cofactor_C_dom,superfamily_Nucleoside_diP_kinase,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif,pirsf_Protein_XRP2	-	no_errors	RP2	HGNC	ENSG00000102218	tier1	-	-	46	0	0.00	51	6	10.53
RRAGB	0	genome.wustl.edu	37	X	55748670	55748670	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	X	55748670	55748670	A	T	SNP	RRAGB	ENST00000262850	human	ensembl	74_37	+1	known	missense	c.178	p.I60F	1.000	pfam_Gtr1_RagA,superfamily_P-loop_NTPase	pfam_Gtr1_RagA,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase	-	no_errors	RRAGB	HGNC	ENSG00000083750	tier1	-	-	33	0	0.00	34	8	19.05
RRP15	0	genome.wustl.edu	37	1	218480940	218480940	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	218480940	218480940	C	T	SNP	RRP15	ENST00000366932	human	ensembl	74_37	+1	known	missense	c.671	p.T224I	0.003	NULL	pfam_DUF1665	-	no_errors	RRP15	HGNC	ENSG00000067533	tier1	-	-	70	0	0.00	37	29	43.94
RTN4RL1	0	genome.wustl.edu	37	17	1840731	1840731	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	1840731	1840731	C	T	SNP	RTN4RL1	ENST00000331238	human	ensembl	74_37	-1	known	missense	c.385	p.A129T	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL1	HGNC	ENSG00000185924	tier1	-	-	42	0	0.00	24	4	14.29
SAPCD1	0	genome.wustl.edu	37	6	31731219	31731219	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	6	31731219	31731219	G	A	SNP	SAPCD1	ENST00000415669	human	ensembl	74_37	+1	known	missense	c.142	p.E48K	0.230	pfam_APC_dom	pfam_APC_dom	-	no_errors	SAPCD1	HGNC	ENSG00000228727	tier1	-	-	68	0	0.00	58	4	6.45
SCAPER	0	genome.wustl.edu	37	15	76673829	76673829	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	15	76673829	76673829	G	T	SNP	SCAPER	ENST00000324767	human	ensembl	74_37	-1	known	missense	c.3595	p.P1199T	0.998	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	tier1	-	-	51	0	0.00	25	4	13.79
SEC24C	0	genome.wustl.edu	37	10	75525889	75525889	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	10	75525889	75525889	G	T	SNP	SEC24C	ENST00000339365	human	ensembl	74_37	+1	known	missense	c.1528	p.V510F	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	tier1	-	-	78	0	0.00	93	7	7.00
SELE	0	genome.wustl.edu	37	1	169696946	169696946	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	169696946	169696946	G	T	SNP	SELE	ENST00000333360	human	ensembl	74_37	-1	known	missense	c.1402	p.H468N	0.002	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,pfam_EG-like_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_EG-like_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELE	HGNC	ENSG00000007908				39	0	0.00	37	2	5.13
SEMA4C	0	genome.wustl.edu	37	2	97530540	97530540	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	97530540	97530540	C	T	SNP	SEMA4C	ENST00000305476	human	ensembl	74_37	-1	known	silent	c.864	p.P288	0.015	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4C	HGNC	ENSG00000168758	tier1	rs141614070	-	69	0	0.00	54	10	15.62
SENP3-EIF4A1	0	genome.wustl.edu	37	17	7481906	7481907	+	RNA	INS	-	-	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	7481906	7481907	-	T	INS	SENP3-EIF4A1	ENST00000579777	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.349:0.653	-	-	-	no_errors	SENP3-EIF4A1	HGNC	ENSG00000265500	tier1			49	0	0.00	28	3	9.68
SENP6	0	genome.wustl.edu	37	6	76376449	76376449	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	6	76376449	76376449	A	T	SNP	SENP6	ENST00000370014	human	ensembl	74_37	+1	known	missense	c.1016	p.D339V	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP6	HGNC	ENSG00000112701				15	0	0.00	9	2	18.18
SERPING1	0	genome.wustl.edu	37	11	57373936	57373936	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	11	57373936	57373936	C	T	SNP	SERPING1	ENST00000278407	human	ensembl	74_37	+1	known	silent	c.945	p.F315	0.002	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPING1	HGNC	ENSG00000149131	tier1	-	-	66	0	0.00	46	10	17.86
SH3GL2	0	genome.wustl.edu	37	9	17761480	17761480	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	9	17761480	17761480	A	T	SNP	SH3GL2	ENST00000380607	human	ensembl	74_37	+1	known	missense	c.160	p.T54S	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,pfam_BAR_dom-cont,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3GL2	HGNC	ENSG00000107295	tier1	-	-	132	0	0.00	110	8	6.78
SLC35G5	0	genome.wustl.edu	37	8	11188922	11188922	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	8	11188922	11188922	T	C	SNP	SLC35G5	ENST00000382435	human	ensembl	74_37	+1	known	missense	c.307	p.W103R	0.984	pfam_DMT	pfam_DMT	-	no_errors	SLC35G5	HGNC	ENSG00000177710				102	0	0.00	73	10	12.05
SLC39A4	0	genome.wustl.edu	37	8	145640648	145640648	+	Silent	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	8	145640648	145640648	G	A	SNP	SLC39A4	ENST00000301305	human	ensembl	74_37	-1	known	silent	c.630	p.F210	0.103	NULL	pfam_ZIP	-	no_errors	SLC39A4	HGNC	ENSG00000147804	tier1	-	-	23	0	0.00	25	11	30.56
SLC4A9	0	genome.wustl.edu	37	5	139743984	139743984	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	5	139743984	139743984	G	T	SNP	SLC4A9	ENST00000230993	human	ensembl	74_37	+1	known	missense	c.1497	p.W499C	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A9	HGNC	ENSG00000113073	tier1	-	-	98	0	0.00	67	4	5.63
SLC7A7	0	genome.wustl.edu	37	14	23245096	23245096	+	Nonsense_Mutation	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	14	23245096	23245096	G	C	SNP	SLC7A7	ENST00000285850	human	ensembl	74_37	-1	known	nonsense	c.944	p.S315*	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A7	HGNC	ENSG00000155465	tier1	-	-	36	0	0.00	14	4	22.22
SLITRK2	0	genome.wustl.edu	37	X	144904330	144904330	+	Silent	SNP	C	C	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	X	144904330	144904330	C	A	SNP	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	silent	c.387	p.T129	0.552	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	tier1	-	-	28	0	0.00	37	5	11.90
SMPD3	0	genome.wustl.edu	37	16	68405671	68405671	+	Silent	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	16	68405671	68405671	G	T	SNP	SMPD3	ENST00000219334	human	ensembl	74_37	-1	known	silent	c.414	p.L138	0.988	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	SMPD3	HGNC	ENSG00000103056				47	0	0.00	29	2	6.45
SNORD115-11	0	genome.wustl.edu	37	15	25434591	25434591	+	RNA	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	15	25434591	25434591	G	A	SNP	SNORD115-11	ENST00000363616	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.093	-	-	-	no_errors	SNORD115-11	HGNC	ENSG00000200486				84	0	0.00	52	3	5.45
SORL1	0	genome.wustl.edu	37	11	121340776	121340776	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	11	121340776	121340776	G	T	SNP	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	missense	c.346	p.V116L	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				50	0	0.00	27	2	6.90
STON2	0	genome.wustl.edu	37	14	81744226	81744226	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	14	81744226	81744226	C	A	SNP	STON2	ENST00000267540	human	ensembl	74_37	-1	known	nonsense	c.1429	p.E477*	1.000	pirsf_Stonin,pfscan_SHD	pfam_Stonin2_N,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON2	HGNC	ENSG00000140022	tier1	-	-	50	0	0.00	49	5	9.26
STON2	0	genome.wustl.edu	37	14	81744227	81744227	+	Silent	SNP	C	C	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	14	81744227	81744227	C	A	SNP	STON2	ENST00000267540	human	ensembl	74_37	-1	known	silent	c.1428	p.L476	0.998	pirsf_Stonin,pfscan_SHD	pfam_Stonin2_N,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON2	HGNC	ENSG00000140022	tier1	-	-	50	0	0.00	49	5	9.26
STRIP1	0	genome.wustl.edu	37	1	110590208	110590208	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	110590208	110590208	A	T	SNP	STRIP1	ENST00000369795	human	ensembl	74_37	+1	known	missense	c.1533	p.Q511H	1.000	pfam_DUF3402	pfam_DUF3402,pfam_N1221	-	no_errors	STRIP1	HGNC	ENSG00000143093	tier1	-	-	48	0	0.00	39	10	20.00
SUV420H2	0	genome.wustl.edu	37	19	55855145	55855145	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	19	55855145	55855145	A	T	SNP	SUV420H2	ENST00000255613	human	ensembl	74_37	+1	known	missense	c.484	p.I162F	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H2	HGNC	ENSG00000133247	tier1	-	-	41	0	0.00	27	4	12.90
TAF3	0	genome.wustl.edu	37	10	8006229	8006229	+	Silent	SNP	T	T	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	10	8006229	8006229	T	A	SNP	TAF3	ENST00000344293	human	ensembl	74_37	+1	known	silent	c.756	p.V252	0.951	NULL	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632	tier1	-	-	27	0	0.00	23	4	14.81
TANGO2	0	genome.wustl.edu	37	22	20049072	20049072	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	22	20049072	20049072	C	T	SNP	TANGO2	ENST00000456048	human	ensembl	74_37	+1	known	silent	c.486	p.N162	0.679	pfam_DUF833	pfam_DUF833	-	no_errors	TANGO2	HGNC	ENSG00000183597	tier1	rs148730599	-	51	0	0.00	34	6	15.00
TCTEX1D2	0	genome.wustl.edu	37	3	196044938	196044938	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	3	196044938	196044938	T	C	SNP	TCTEX1D2	ENST00000325318	human	ensembl	74_37	-1	known	missense	c.86	p.Y29C	0.992	NULL	pfam_Tctex	-	no_errors	TCTEX1D2	HGNC	ENSG00000213123	tier1	-	-	60	0	0.00	52	9	14.75
TECRL	0	genome.wustl.edu	37	4	65180404	65180404	+	Silent	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	4	65180404	65180404	T	C	SNP	TECRL	ENST00000381210	human	ensembl	74_37	-1	known	silent	c.513	p.G171	0.005	NULL	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	TECRL	HGNC	ENSG00000205678	tier1	-	-	30	0	0.00	19	12	38.71
TEX10	0	genome.wustl.edu	37	9	103108464	103108464	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	9	103108464	103108464	G	T	SNP	TEX10	ENST00000374902	human	ensembl	74_37	-1	known	missense	c.1027	p.P343T	0.006	superfamily_ARM-type_fold	pfam_IPI1/TEX10,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891	tier1	-	-	44	0	0.00	17	3	15.00
TJP1	0	genome.wustl.edu	37	15	30012102	30012102	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	15	30012102	30012102	G	-	DEL	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	frame_shift_del	c.2882	p.P961fs	0.342	NULL	pfam_PDZ,pfam_ZU5,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin-like,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067	tier1			85	0	0.00	35	14	28.57
TMC4	0	genome.wustl.edu	37	19	54669176	54669176	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	19	54669176	54669176	G	A	SNP	TMC4	ENST00000301187	human	ensembl	74_37	-1	known	missense	c.922	p.R308C	0.565	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608				50	0	0.00	26	3	10.34
TMEM95	0	genome.wustl.edu	37	17	7259742	7259742	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	7259742	7259742	G	T	SNP	TMEM95	ENST00000389982	human	ensembl	74_37	+1	known	missense	c.433	p.A145S	0.997	NULL	NULL	-	no_errors	TMEM95	HGNC	ENSG00000182896	tier1	-	-	58	0	0.00	44	4	8.33
TP53	0	genome.wustl.edu	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	7574003	7574003	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.1024	p.R342*	0.307	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	16	0	0.00	8	7	46.67
TP53	0	genome.wustl.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	7578190	7578190	T	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.659	p.Y220C	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	72	0	0.00	37	6	13.95
TRANK1	0	genome.wustl.edu	37	3	36900302	36900302	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	3	36900302	36900302	G	C	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	missense	c.1447	p.L483V	0.984	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	tier1	-	-	46	0	0.00	20	4	16.67
TRERF1	0	genome.wustl.edu	37	6	42233492	42233492	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	6	42233492	42233492	G	T	SNP	TRERF1	ENST00000541110	human	ensembl	74_37	-1	known	nonsense	c.1481	p.S494*	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496				47	0	0.00	68	4	5.56
TRIP12	0	genome.wustl.edu	37	2	230656615	230656615	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	230656615	230656615	C	T	SNP	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	missense	c.4157	p.R1386K	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827	tier1	-	-	51	0	0.00	36	4	9.76
TRPM6	0	genome.wustl.edu	37	9	77377554	77377554	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	9	77377554	77377554	G	A	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.4033	p.L1345F	0.998	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				19	0	0.00	17	3	15.00
TSPY10	0	genome.wustl.edu	37	Y	9368183	9368183	+	RNA	SNP	T	T	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	Y	9368183	9368183	T	G	SNP	TSPY10	ENST00000489397	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TSPY10	HGNC	ENSG00000236424	tier1	-	-	142	0	0.00	128	33	20.50
TXNDC2	0	genome.wustl.edu	37	18	9887037	9887037	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	18	9887037	9887037	C	T	SNP	TXNDC2	ENST00000306084	human	ensembl	74_37	+1	known	silent	c.561	p.I187	0.000	pfam_Glutenin	pfam_Thioredoxin_domain,pfam_Glutenin,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC2	HGNC	ENSG00000168454	tier1	-	-	74	0	0.00	82	7	7.87
UGT1A6	0	genome.wustl.edu	37	2	234602073	234602073	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	234602073	234602073	G	C	SNP	UGT1A6	ENST00000305139	human	ensembl	74_37	+1	known	missense	c.423	p.E141D	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A6	HGNC	ENSG00000167165	tier1	-	-	66	0	0.00	35	13	27.08
USP5	0	genome.wustl.edu	37	12	6970267	6970267	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	12	6970267	6970267	A	G	SNP	USP5	ENST00000229268	human	ensembl	74_37	+1	known	missense	c.1495	p.K499E	1.000	pfam_Peptidase_C19/C67,pirsf_Ubiquitinyl_hydrolase,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_UBA/Ts_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP5	HGNC	ENSG00000111667	tier1	-	-	42	0	0.00	43	8	15.69
UTY	0	genome.wustl.edu	37	Y	15591138	15591138	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	Y	15591138	15591138	C	A	SNP	UTY	ENST00000382896	human	ensembl	74_37	-1	known	missense	c.212	p.G71V	1.000	NULL	pfam_JmjC_dom,pfam_TPR_1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UTY	HGNC	ENSG00000183878	tier1	-	-	27	0	0.00	31	4	11.43
VAV1	0	genome.wustl.edu	37	19	6833625	6833625	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	19	6833625	6833625	G	A	SNP	VAV1	ENST00000602142	human	ensembl	74_37	+1	known	missense	c.1697	p.R566Q	0.665	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968	tier1	-	-	142	0	0.00	60	31	34.07
VCAN	0	genome.wustl.edu	37	5	82838084	82838084	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	5	82838084	82838084	C	T	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.9262	p.P3088S	1.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				19	0	0.00	11	2	15.38
VPS16	0	genome.wustl.edu	37	20	2846872	2846872	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	20	2846872	2846872	C	T	SNP	VPS16	ENST00000380445	human	ensembl	74_37	+1	known	silent	c.2286	p.I762	1.000	pfam_Vps16_C,pirsf_VPS16	pfam_Vps16_N,pfam_Vps16_C,pirsf_VPS16	-	no_errors	VPS16	HGNC	ENSG00000215305	tier1	-	-	116	0	0.00	71	9	11.25
VPS39	0	genome.wustl.edu	37	15	42470518	42470518	+	Silent	SNP	C	C	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	15	42470518	42470518	C	A	SNP	VPS39	ENST00000348544	human	ensembl	74_37	-1	known	silent	c.891	p.V297	1.000	smart_Citron	pfam_Citron,pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,smart_Citron	-	no_errors	VPS39	HGNC	ENSG00000166887	tier1	-	-	32	0	0.00	13	8	38.10
WDFY2	0	genome.wustl.edu	37	13	52333896	52333896	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	13	52333896	52333896	C	T	SNP	WDFY2	ENST00000298125	human	ensembl	74_37	+1	known	silent	c.1194	p.V398	0.002	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_WD40_repeat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDFY2	HGNC	ENSG00000139668				52	0	0.00	23	3	11.54
WDR26	0	genome.wustl.edu	37	1	224581656	224581656	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	224581656	224581656	G	T	SNP	WDR26	ENST00000414423	human	ensembl	74_37	-1	known	missense	c.1834	p.H612N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR26	HGNC	ENSG00000162923	tier1	-	-	53	0	0.00	65	4	5.80
XIRP2	0	genome.wustl.edu	37	2	168099825	168099825	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	2	168099825	168099825	G	T	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.1923	p.E641D	0.771	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				63	0	0.00	51	3	5.56
XYLT1	0	genome.wustl.edu	37	16	17202585	17202585	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	16	17202585	17202585	C	T	SNP	XYLT1	ENST00000261381	human	ensembl	74_37	-1	known	silent	c.2847	p.L949	1.000	NULL	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT1	HGNC	ENSG00000103489	tier1	-	-	25	0	0.00	27	5	15.62
ZBTB16	0	genome.wustl.edu	37	11	114027093	114027093	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	11	114027093	114027093	G	A	SNP	ZBTB16	ENST00000335953	human	ensembl	74_37	+1	known	missense	c.1303	p.E435K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906	tier1	-	-	91	0	0.00	65	4	5.80
ZBTB7B	0	genome.wustl.edu	37	1	154975307	154975307	+	RNA	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	154975307	154975307	C	T	SNP	ZBTB7B	ENST00000487542	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZBTB7B	HGNC	ENSG00000160685	tier1	-	-	27	0	0.00	17	4	19.05
ZDHHC11B	0	genome.wustl.edu	37	5	712139	712139	+	RNA	SNP	T	T	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	5	712139	712139	T	A	SNP	ZDHHC11B	ENST00000522356	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZDHHC11B	HGNC	ENSG00000206077	tier1	rs111351502	-	26	0	0.00	8	3	27.27
ZFP42	0	genome.wustl.edu	37	4	188924012	188924012	+	Silent	SNP	G	G	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	4	188924012	188924012	G	T	SNP	ZFP42	ENST00000326866	human	ensembl	74_37	+1	known	silent	c.51	p.L17	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP42	HGNC	ENSG00000179059	tier1	-	-	53	0	0.00	40	13	24.53
ZNF324	0	genome.wustl.edu	37	19	58983245	58983245	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	19	58983245	58983245	C	A	SNP	ZNF324	ENST00000196482	human	ensembl	74_37	+1	known	missense	c.1386	p.F462L	0.097	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324	HGNC	ENSG00000083812	tier1	-	-	50	0	0.00	31	5	13.89
ZNF337	0	genome.wustl.edu	37	20	25657230	25657231	+	Frame_Shift_Ins	INS	-	-	TG			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	20	25657230	25657231	-	TG	INS	ZNF337	ENST00000252979	human	ensembl	74_37	-1	known	frame_shift_ins	c.694_693	p.G231fs	0.950:0.945	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF337	HGNC	ENSG00000130684	tier1			70	0	0.00	82	12	12.77
ZNF609	0	genome.wustl.edu	37	15	64966881	64966881	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	15	64966881	64966881	G	C	SNP	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	missense	c.1828	p.D610H	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357				15	0	0.00	14	3	17.65
ZNF644	0	genome.wustl.edu	37	1	91406272	91406272	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	1	91406272	91406272	C	T	SNP	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	silent	c.639	p.K213	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				52	0	0.00	47	3	5.88
ZNF750	0	genome.wustl.edu	37	17	80790319	80790320	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	17	80790319	80790320	-	AA	INS	ZNF750	ENST00000269394	human	ensembl	74_37	-1	known	frame_shift_ins	c.12_11	p.K5fs	0.970:0.933	NULL	NULL	-	no_errors	ZNF750	HGNC	ENSG00000141579	tier1			121	0	0.00	68	26	27.66
ZSCAN1	0	genome.wustl.edu	37	19	58565137	58565137	+	Silent	SNP	C	C	T			TCGA-LN-A49S-01A-11D-A247-09	TCGA-LN-A49S-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f510b615-094d-4ea3-8f92-09e80905a379	09fb63d6-c76c-4429-9bf7-e7479c4b834c	19	58565137	58565137	C	T	SNP	ZSCAN1	ENST00000282326	human	ensembl	74_37	+1	known	silent	c.945	p.R315	0.023	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN1	HGNC	ENSG00000152467	tier1	-	-	42	0	0.00	19	6	24.00
