Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCA4	0	genome.wustl.edu	37	1	94502905	94502905	+	Silent	SNP	C	C	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	94502905	94502905	C	A	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	silent	c.3609	p.G1203	0.997	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				18	0	0.00	21	3	12.50
ACBD5	0	genome.wustl.edu	37	10	27497335	27497335	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	10	27497335	27497335	C	T	SNP	ACBD5	ENST00000375888	human	ensembl	74_37	-1	known	missense	c.1271	p.R424Q	0.895	pirsf_M-assoc_diazepam-bd-inh	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD5	HGNC	ENSG00000107897	tier1	-	-	31	0	0.00	35	30	46.15
ACOT11	0	genome.wustl.edu	37	1	55064996	55064996	+	Silent	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	55064996	55064996	G	A	SNP	ACOT11	ENST00000371316	human	ensembl	74_37	+1	known	silent	c.792	p.L264	1.000	pfam_Thioestr_supf	pfam_START_lipid-bd_dom,pfam_Thioestr_supf,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	ACOT11	HGNC	ENSG00000162390	tier1	-	-	26	0	0.00	38	23	37.70
ACSS2	0	genome.wustl.edu	37	20	33508430	33508430	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	20	33508430	33508430	G	C	SNP	ACSS2	ENST00000253382	human	ensembl	74_37	+1	known	missense	c.1100	p.W367S	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS2	HGNC	ENSG00000131069	tier1	-	-	22	0	0.00	22	9	29.03
ACSS2	0	genome.wustl.edu	37	20	33508850	33508850	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	20	33508850	33508850	G	A	SNP	ACSS2	ENST00000253382	human	ensembl	74_37	+1	known	nonsense	c.1224	p.W408*	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS2	HGNC	ENSG00000131069	tier1	-	-	44	0	0.00	33	16	32.65
ACSS2	0	genome.wustl.edu	37	20	33509173	33509173	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	20	33509173	33509173	G	A	SNP	ACSS2	ENST00000253382	human	ensembl	74_37	+1	known	missense	c.1357	p.E453K	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS2	HGNC	ENSG00000131069	tier1	-	-	30	0	0.00	39	15	27.78
ACSS2	0	genome.wustl.edu	37	20	33509628	33509628	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	20	33509628	33509628	G	A	SNP	ACSS2	ENST00000253382	human	ensembl	74_37	+1	known	missense	c.1546	p.E516K	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS2	HGNC	ENSG00000131069	tier1	-	-	83	0	0.00	65	50	43.48
ACSS2	0	genome.wustl.edu	37	20	33509640	33509640	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	20	33509640	33509640	G	A	SNP	ACSS2	ENST00000253382	human	ensembl	74_37	+1	known	missense	c.1558	p.E520K	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS2	HGNC	ENSG00000131069	tier1	-	-	87	0	0.00	62	47	43.12
ACSS2	0	genome.wustl.edu	37	20	33509658	33509658	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	20	33509658	33509658	G	A	SNP	ACSS2	ENST00000253382	human	ensembl	74_37	+1	known	missense	c.1576	p.E526K	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS2	HGNC	ENSG00000131069	tier1	-	-	87	0	0.00	60	42	41.18
ACTN2	0	genome.wustl.edu	37	1	236914838	236914838	+	Silent	SNP	C	C	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	236914838	236914838	C	A	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	silent	c.1725	p.I575	0.571	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522	tier1	-	-	76	0	0.00	97	29	23.02
ADAM8	0	genome.wustl.edu	37	10	135086008	135086008	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	10	135086008	135086008	C	T	SNP	ADAM8	ENST00000445355	human	ensembl	74_37	-1	known	missense	c.787	p.D263N	0.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,pfam_ADAM_Cys-rich,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM8	HGNC	ENSG00000151651	tier1	-	-	75	0	0.00	21	49	70.00
AFF3	0	genome.wustl.edu	37	2	100218011	100218013	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	100218011	100218013	GCT	-	DEL	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	in_frame_del	c.1332_1330	p.S444in_frame_del	1.000:1.000:1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218	tier1			33	0	0.00	35	5	12.50
AK3	0	genome.wustl.edu	37	9	4719272	4719272	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	9	4719272	4719272	C	T	SNP	AK3	ENST00000381809	human	ensembl	74_37	-1	known	missense	c.307	p.D103N	1.000	pfam_Adenylate_kin,superfamily_P-loop_NTPase,prints_Adenylate_kin,tigrfam_Adenyl_kin_sub	pfam_Adenylate_kin,pfam_Adenylate_kinase_lid-dom,superfamily_P-loop_NTPase,superfamily_Adenylate_kinase_lid-dom,prints_Adenylate_kin,tigrfam_Adenyl_kin_sub	-	no_errors	AK3	HGNC	ENSG00000147853	tier1	-	-	39	0	0.00	6	17	73.91
AKAP13	0	genome.wustl.edu	37	15	86262365	86262365	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	15	86262365	86262365	C	T	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	silent	c.6072	p.Y2024	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	tier1	-	-	55	0	0.00	38	29	43.28
AMBRA1	0	genome.wustl.edu	37	11	46563784	46563784	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	46563784	46563784	C	T	SNP	AMBRA1	ENST00000458649	human	ensembl	74_37	-1	known	missense	c.1783	p.E595K	0.999	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	tier1	-	-	43	0	0.00	43	22	33.85
ANKRD24	0	genome.wustl.edu	37	19	4219681	4219681	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	19	4219681	4219681	G	A	SNP	ANKRD24	ENST00000318934	human	ensembl	74_37	+1	known	missense	c.3097	p.E1033K	0.941	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD24	HGNC	ENSG00000089847	tier1	-	-	36	0	0.00	49	25	33.78
ANKRD30A	0	genome.wustl.edu	37	10	37486225	37486225	+	Silent	SNP	A	A	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	10	37486225	37486225	A	C	SNP	ANKRD30A	ENST00000361713	human	ensembl	74_37	+1	known	silent	c.2463	p.P821	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	tier1	-	-	139	0	0.00	108	77	41.62
ANKS1B	0	genome.wustl.edu	37	12	99640579	99640579	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	12	99640579	99640579	C	T	SNP	ANKS1B	ENST00000329257	human	ensembl	74_37	-1	known	missense	c.1820	p.G607D	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046				18	0	0.00	37	4	9.76
ANKS3	0	genome.wustl.edu	37	16	4777008	4777008	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	16	4777008	4777008	T	C	SNP	ANKS3	ENST00000304283	human	ensembl	74_37	-1	known	missense	c.341	p.N114S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS3	HGNC	ENSG00000168096	tier1	-	-	27	0	0.00	27	16	37.21
APOL4	0	genome.wustl.edu	37	22	36587208	36587208	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	22	36587208	36587208	G	T	SNP	APOL4	ENST00000352371	human	ensembl	74_37	-1	known	missense	c.968	p.A323D	0.007	pfam_ApoL	pfam_ApoL	-	no_errors	APOL4	HGNC	ENSG00000100336	tier1	-	-	46	0	0.00	29	4	12.12
ARHGAP36	0	genome.wustl.edu	37	X	130222715	130222715	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	X	130222715	130222715	C	G	SNP	ARHGAP36	ENST00000276211	human	ensembl	74_37	+1	known	missense	c.1600	p.R534G	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256	tier1	-	-	21	0	0.00	7	27	79.41
ARL13B	0	genome.wustl.edu	37	3	93758767	93758767	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	3	93758767	93758767	G	T	SNP	ARL13B	ENST00000394222	human	ensembl	74_37	+1	known	missense	c.733	p.G245C	0.000	NULL	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL13B	HGNC	ENSG00000169379	tier1	-	-	50	0	0.00	57	4	6.56
ARL6IP5	0	genome.wustl.edu	37	3	69153771	69153771	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	3	69153771	69153771	G	A	SNP	ARL6IP5	ENST00000273258	human	ensembl	74_37	+1	known	missense	c.551	p.S184N	1.000	NULL	pfam_Prenylated_rab_accept_PRA1	-	no_errors	ARL6IP5	HGNC	ENSG00000144746				23	0	0.00	25	2	7.41
ASMT	0	genome.wustl.edu	37	X	1743287	1743287	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	X	1743287	1743287	G	A	SNP	ASMT	ENST00000381241	human	ensembl	74_37	+1	known	missense	c.370	p.V124M	0.999	pfam_O_MeTrfase_2,pirsf_COMT	pfam_O_MeTrfase_2,pirsf_COMT	-	no_errors	ASMT	HGNC	ENSG00000196433	tier1	-	-	55	0	0.00	55	4	6.78
ATXN10	0	genome.wustl.edu	37	22	46098580	46098580	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	22	46098580	46098580	A	G	SNP	ATXN10	ENST00000252934	human	ensembl	74_37	+1	known	missense	c.500	p.N167S	0.497	superfamily_ARM-type_fold	pfam_Ataxin-10_domain,superfamily_ARM-type_fold	-	no_errors	ATXN10	HGNC	ENSG00000130638	tier1	-	-	124	0	0.00	95	68	41.72
BCDIN3D	0	genome.wustl.edu	37	12	50236730	50236730	+	Silent	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	12	50236730	50236730	G	T	SNP	BCDIN3D	ENST00000333924	human	ensembl	74_37	-1	known	silent	c.141	p.L47	0.998	NULL	pfam_Bin3	-	no_errors	BCDIN3D	HGNC	ENSG00000186666	tier1	-	-	33	0	0.00	25	14	35.90
BCS1L	0	genome.wustl.edu	37	2	219527683	219527683	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	219527683	219527683	G	A	SNP	BCS1L	ENST00000359273	human	ensembl	74_37	+1	known	missense	c.967	p.E323K	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_BCS1_N,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	BCS1L	HGNC	ENSG00000074582	tier1	-	-	55	0	0.00	37	24	39.34
BIN3	0	genome.wustl.edu	37	8	22481554	22481554	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	8	22481554	22481554	C	G	SNP	BIN3	ENST00000276416	human	ensembl	74_37	-1	known	missense	c.489	p.E163D	0.999	pfam_BAR_dom,pfam_Vps5_C,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_Vps5_C,smart_BAR_dom,pfscan_BAR_dom	-	no_errors	BIN3	HGNC	ENSG00000147439	tier1	-	-	26	0	0.00	50	21	29.58
BRINP3	0	genome.wustl.edu	37	1	190250712	190250712	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	190250712	190250712	G	C	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.405	p.F135L	1.000	pfam_MACPF,smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670	tier1	-	-	46	0	0.00	57	15	20.83
C19orf81	0	genome.wustl.edu	37	19	51161272	51161272	+	Silent	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	19	51161272	51161272	G	A	SNP	C19orf81	ENST00000425202	human	ensembl	74_37	+1	known	silent	c.288	p.E96	0.990	NULL	NULL	-	no_errors	C19orf81	HGNC	ENSG00000235034	tier1	-	-	45	0	0.00	47	34	41.98
C1orf27	0	genome.wustl.edu	37	1	186352217	186352217	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	186352217	186352217	G	A	SNP	C1orf27	ENST00000287859	human	ensembl	74_37	+1	known	missense	c.163	p.E55K	0.998	NULL	NULL	-	no_errors	C1orf27	HGNC	ENSG00000157181	tier1	-	-	63	0	0.00	46	45	49.45
C20orf196	0	genome.wustl.edu	37	20	5843675	5843675	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	20	5843675	5843675	A	T	SNP	C20orf196	ENST00000303142	human	ensembl	74_37	+1	known	missense	c.184	p.S62C	0.000	NULL	NULL	-	no_errors	C20orf196	HGNC	ENSG00000171984				20	0	0.00	28	2	6.67
C7orf65	0	genome.wustl.edu	37	7	47698758	47698758	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	47698758	47698758	C	A	SNP	C7orf65	ENST00000408988	human	ensembl	74_37	+1	putative	missense	c.388	p.Q130K	0.003	NULL	NULL	-	no_errors	C7orf65	HGNC	ENSG00000221845	tier1	-	-	46	0	0.00	67	25	27.17
C9orf114	0	genome.wustl.edu	37	9	131591119	131591120	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	9	131591119	131591120	-	T	INS	C9orf114	ENST00000361256	human	ensembl	74_37	-1	known	frame_shift_ins	c.103_102	p.W34fs	1.000:0.998	NULL	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold	-	no_errors	C9orf114	HGNC	ENSG00000198917	tier1			16	0	0.00	17	2	10.53
CALCB	0	genome.wustl.edu	37	11	15096643	15096643	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	15096643	15096643	C	T	SNP	CALCB	ENST00000324229	human	ensembl	74_37	+1	known	silent	c.123	p.L41	0.435	pfam_Procalcitonin/adrenomedullin	pfam_Procalcitonin/adrenomedullin,smart_Calcitonin_peptide-like,prints_Calcitonin_gene-rel_peptide,prints_Pro-islet_amyloid_polypep	-	no_errors	CALCB	HGNC	ENSG00000175868	tier1	-	-	44	0	0.00	67	22	24.72
CAMK2N1	0	genome.wustl.edu	37	1	20809957	20809959	+	RNA	DEL	CTC	CTC	-			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	20809957	20809959	CTC	-	DEL	CAMK2N1	ENST00000489020	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.189:0.237	-	-	-	no_errors	CAMK2N1	HGNC	ENSG00000162545	tier1			29	0	0.00	29	4	12.12
CAMSAP2	0	genome.wustl.edu	37	1	200826893	200826893	+	Silent	SNP	A	A	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	200826893	200826893	A	G	SNP	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	silent	c.4176	p.K1392	0.999	pfam_CKK_domain,superfamily_PRC_barrel-like	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200	tier1	-	-	23	0	0.00	26	32	55.17
CARS	0	genome.wustl.edu	37	11	3040371	3040371	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	3040371	3040371	C	T	SNP	CARS	ENST00000380525	human	ensembl	74_37	-1	known	missense	c.1393	p.E465K	1.000	pfam_Cys-tRNA/MSH_ligase,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS	HGNC	ENSG00000110619	tier1	-	-	54	0	0.00	34	23	40.35
CARS2	0	genome.wustl.edu	37	13	111298382	111298382	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	13	111298382	111298382	G	T	SNP	CARS2	ENST00000257347	human	ensembl	74_37	-1	known	missense	c.1249	p.P417T	0.115	superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS2	HGNC	ENSG00000134905				46	0	0.00	50	4	7.41
CCNY	0	genome.wustl.edu	37	10	35805450	35805450	+	Splice_Site	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	10	35805450	35805450	G	A	SNP	CCNY	ENST00000374704	human	ensembl	74_37	+1	known	splice_site	c.265-1	e4-1	1.000	-	-	-	no_errors	CCNY	HGNC	ENSG00000108100	tier1	-	-	57	0	0.00	68	21	23.60
CCT6A	0	genome.wustl.edu	37	7	56125732	56125732	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	56125732	56125732	A	T	SNP	CCT6A	ENST00000275603	human	ensembl	74_37	+1	known	missense	c.661	p.M221L	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6A	HGNC	ENSG00000146731	tier1	-	-	60	0	0.00	47	56	54.37
CCZ1	0	genome.wustl.edu	37	7	5951496	5951496	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	5951496	5951496	C	T	SNP	CCZ1	ENST00000325974	human	ensembl	74_37	+1	known	missense	c.785	p.A262V	1.000	pfam_DUF1712_fun	pfam_DUF1712_fun	-	no_errors	CCZ1	HGNC	ENSG00000122674	tier1	-	-	19	0	0.00	25	11	30.56
CDC123	0	genome.wustl.edu	37	10	12277093	12277093	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	10	12277093	12277093	G	A	SNP	CDC123	ENST00000281141	human	ensembl	74_37	+1	known	missense	c.536	p.R179Q	1.000	pfam_D123,pirsf_Cell_div_Cdc123	pfam_D123,pirsf_Cell_div_Cdc123	-	no_errors	CDC123	HGNC	ENSG00000151465	tier1	-	-	97	0	0.00	179	36	16.74
CDK11A	0	genome.wustl.edu	37	1	1634944	1634944	+	Silent	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	1634944	1634944	G	C	SNP	CDK11A	ENST00000404249	human	ensembl	74_37	-1	known	silent	c.2031	p.L677	0.993	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128	tier1	-	-	72	0	0.00	58	31	34.83
CDK2	0	genome.wustl.edu	37	12	56365301	56365301	+	RNA	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	12	56365301	56365301	C	G	SNP	CDK2	ENST00000556656	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	CDK2	HGNC	ENSG00000123374	tier1	-	-	40	0	0.00	33	12	26.67
CELSR2	0	genome.wustl.edu	37	1	109817677	109817677	+	RNA	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	109817677	109817677	C	G	SNP	CELSR2	ENST00000498157	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CELSR2	HGNC	ENSG00000143126	tier1	-	-	30	0	0.00	30	21	41.18
CENPF	0	genome.wustl.edu	37	1	214802455	214802455	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	214802455	214802455	G	A	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.1135	p.E379K	1.000	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	tier1	-	-	47	0	0.00	57	22	27.85
CHMP2A	0	genome.wustl.edu	37	19	59063771	59063771	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	19	59063771	59063771	C	G	SNP	CHMP2A	ENST00000312547	human	ensembl	74_37	-1	known	missense	c.203	p.R68P	1.000	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP2A	HGNC	ENSG00000130724				41	0	0.00	93	7	7.00
CHRNB3	0	genome.wustl.edu	37	8	42586882	42586882	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	8	42586882	42586882	C	T	SNP	CHRNB3	ENST00000289957	human	ensembl	74_37	+1	known	silent	c.432	p.T144	0.245	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432	tier1	-	-	32	0	0.00	52	23	30.67
CNPPD1	0	genome.wustl.edu	37	2	220037669	220037669	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	220037669	220037669	G	A	SNP	CNPPD1	ENST00000360507	human	ensembl	74_37	-1	known	missense	c.872	p.S291F	0.000	NULL	pfam_Cyclin_PHO80-like,superfamily_Cyclin-like	-	no_errors	CNPPD1	HGNC	ENSG00000115649	tier1	-	-	33	0	0.00	24	15	38.46
COPB1	0	genome.wustl.edu	37	11	14498549	14498549	+	Silent	SNP	T	T	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	14498549	14498549	T	C	SNP	COPB1	ENST00000249923	human	ensembl	74_37	-1	known	silent	c.1371	p.G457	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_COPB1	pfam_Coatomer_bsu_C,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_COPB1	-	no_errors	COPB1	HGNC	ENSG00000129083	tier1	-	-	43	0	0.00	29	12	29.27
COPS6	0	genome.wustl.edu	37	7	99688533	99688533	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	99688533	99688533	C	T	SNP	COPS6	ENST00000303904	human	ensembl	74_37	+1	known	silent	c.495	p.V165	1.000	smart_JAB_MPN_dom	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	COPS6	HGNC	ENSG00000168090	tier1	-	-	23	0	0.00	27	11	28.95
COPS7B	0	genome.wustl.edu	37	2	232646561	232646561	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	232646561	232646561	G	T	SNP	COPS7B	ENST00000409295	human	ensembl	74_37	+1	putative	missense	c.28	p.V10F	0.997	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS7B	HGNC	ENSG00000144524				42	0	0.00	45	3	6.25
CORO2A	0	genome.wustl.edu	37	9	100892121	100892121	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	9	100892121	100892121	T	A	SNP	CORO2A	ENST00000343933	human	ensembl	74_37	-1	known	missense	c.922	p.S308C	0.997	pfam_DUF1900,superfamily_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO2A	HGNC	ENSG00000106789	tier1	-	-	50	0	0.00	45	36	43.90
CRB2	0	genome.wustl.edu	37	9	126133015	126133015	+	Silent	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	9	126133015	126133015	G	A	SNP	CRB2	ENST00000373631	human	ensembl	74_37	+1	known	silent	c.1683	p.P561	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204	tier1	-	-	35	0	0.00	29	21	41.18
CSMD3	0	genome.wustl.edu	37	8	113316958	113316958	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	8	113316958	113316958	T	C	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.8258	p.Y2753C	0.994	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	tier1	-	-	49	0	0.00	37	14	27.45
CSRP1	0	genome.wustl.edu	37	1	201453557	201453557	+	RNA	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	201453557	201453557	C	T	SNP	CSRP1	ENST00000526256	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CSRP1	HGNC	ENSG00000159176	tier1	-	-	38	0	0.00	44	23	34.33
CTDP1	0	genome.wustl.edu	37	18	77473117	77473117	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	18	77473117	77473117	G	C	SNP	CTDP1	ENST00000299543	human	ensembl	74_37	+1	known	missense	c.1009	p.E337Q	1.000	pfscan_NIF	pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk	-	no_errors	CTDP1	HGNC	ENSG00000060069	tier1	-	-	21	0	0.00	29	14	32.56
CTDSP1	0	genome.wustl.edu	37	2	219269237	219269237	+	RNA	SNP	C	C	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	219269237	219269237	C	A	SNP	CTDSP1	ENST00000464255	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTDSP1	HGNC	ENSG00000144579	tier1	-	-	63	0	0.00	72	37	33.94
CUL7	0	genome.wustl.edu	37	6	43005697	43005697	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	6	43005697	43005697	C	T	SNP	CUL7	ENST00000535468	human	ensembl	74_37	-1	known	missense	c.5078	p.S1693N	0.986	smart_Cullin_neddylation_domain	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	tier1	-	-	29	0	0.00	15	8	34.78
CYTH3	0	genome.wustl.edu	37	7	6210572	6210572	+	Silent	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	6210572	6210572	G	C	SNP	CYTH3	ENST00000350796	human	ensembl	74_37	-1	known	silent	c.600	p.L200	0.943	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH3	HGNC	ENSG00000008256	tier1	-	-	65	0	0.00	108	26	19.40
CYTH3	0	genome.wustl.edu	37	7	6210939	6210939	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	6210939	6210939	G	C	SNP	CYTH3	ENST00000350796	human	ensembl	74_37	-1	known	missense	c.456	p.F152L	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH3	HGNC	ENSG00000008256	tier1	-	-	30	0	0.00	41	17	29.31
DFNB31	0	genome.wustl.edu	37	9	117165569	117165569	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	9	117165569	117165569	C	T	SNP	DFNB31	ENST00000362057	human	ensembl	74_37	-1	known	silent	c.2469	p.A823	0.020	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DFNB31	HGNC	ENSG00000095397	tier1	rs144207463	-	48	0	0.00	48	42	46.67
DIS3	0	genome.wustl.edu	37	13	73345944	73345944	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	13	73345944	73345944	G	A	SNP	DIS3	ENST00000377767	human	ensembl	74_37	-1	known	missense	c.1594	p.L532F	1.000	NULL	smart_PIN_dom	-	no_errors	DIS3	HGNC	ENSG00000083520	tier1	-	-	31	0	0.00	28	8	22.22
DIS3L	0	genome.wustl.edu	37	15	66615878	66615878	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	15	66615878	66615878	C	G	SNP	DIS3L	ENST00000319212	human	ensembl	74_37	+1	known	missense	c.1622	p.S541C	0.985	NULL	NULL	-	no_errors	DIS3L	HGNC	ENSG00000166938	tier1	-	-	56	0	0.00	51	35	40.70
DNASE1L1	0	genome.wustl.edu	37	X	153631450	153631450	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	X	153631450	153631450	C	T	SNP	DNASE1L1	ENST00000014935	human	ensembl	74_37	-1	known	missense	c.607	p.E203K	0.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,pirsf_DNase_I,prints_DNase_I	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,pirsf_DNase_I,prints_DNase_I	-	no_errors	DNASE1L1	HGNC	ENSG00000013563	tier1	-	-	30	0	0.00	15	28	65.12
DNASE1L1	0	genome.wustl.edu	37	X	153633251	153633251	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	X	153633251	153633251	C	G	SNP	DNASE1L1	ENST00000014935	human	ensembl	74_37	-1	known	missense	c.229	p.D77H	0.017	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,pirsf_DNase_I,prints_DNase_I	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,pirsf_DNase_I,prints_DNase_I	-	no_errors	DNASE1L1	HGNC	ENSG00000013563	tier1	-	-	36	0	0.00	18	45	71.43
DPY19L2P2	0	genome.wustl.edu	37	7	102836007	102836007	+	RNA	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	102836007	102836007	G	C	SNP	DPY19L2P2	ENST00000312132	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.762	-	-	-	no_errors	DPY19L2P2	HGNC	ENSG00000170629	tier1	-	-	93	0	0.00	105	41	28.08
DRD5	0	genome.wustl.edu	37	4	9784785	9784785	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	4	9784785	9784785	T	G	SNP	DRD5	ENST00000304374	human	ensembl	74_37	+1	known	missense	c.1132	p.F378V	0.043	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Dopamine_D5_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676				52	0	0.00	35	3	7.89
DYNC2H1	0	genome.wustl.edu	37	11	103031724	103031724	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	103031724	103031724	G	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.4442	p.G1481V	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	tier1	-	-	68	0	0.00	76	4	5.00
DYRK3	0	genome.wustl.edu	37	1	206810256	206810256	+	RNA	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	206810256	206810256	C	T	SNP	DYRK3	ENST00000489878	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DYRK3	HGNC	ENSG00000143479	tier1	rs201854176	-	59	0	0.00	65	25	27.78
EBAG9	0	genome.wustl.edu	37	8	110575650	110575650	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	8	110575650	110575650	C	T	SNP	EBAG9	ENST00000531677	human	ensembl	74_37	+1	novel	silent	c.546	p.L182	0.003	pirsf_Cancer-assoc_antigen_RCAS1	pirsf_Cancer-assoc_antigen_RCAS1	-	no_errors	EBAG9	HGNC	ENSG00000147654	tier1	-	-	89	0	0.00	77	104	57.46
EBPL	0	genome.wustl.edu	37	13	50235138	50235138	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	13	50235138	50235138	T	A	SNP	EBPL	ENST00000242827	human	ensembl	74_37	-1	known	missense	c.587	p.Q196L	0.002	pfam_EBP	pfam_EBP	-	no_errors	EBPL	HGNC	ENSG00000123179				18	0	0.00	35	2	5.41
EIF2B1	0	genome.wustl.edu	37	12	124116905	124116905	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	12	124116905	124116905	C	G	SNP	EIF2B1	ENST00000424014	human	ensembl	74_37	-1	known	missense	c.102	p.L34F	0.993	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B1	HGNC	ENSG00000111361	tier1	-	-	45	0	0.00	27	17	38.64
ENAM	0	genome.wustl.edu	37	4	71508640	71508640	+	Silent	SNP	A	A	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	4	71508640	71508640	A	T	SNP	ENAM	ENST00000396073	human	ensembl	74_37	+1	known	silent	c.1497	p.G499	0.998	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464	tier1	-	-	14	0	0.00	6	7	53.85
ENSG00000207091	0	genome.wustl.edu	37	15	34607028	34607028	+	RNA	DEL	A	A	-			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	15	34607028	34607028	A	-	DEL	ENSG00000207091	ENST00000384363	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.866	-	-	-	no_errors	Y_RNA	RFAM	ENSG00000207091	tier1			9	0	0.00	23	3	11.54
ENSG00000214733	0	genome.wustl.edu	37	8	144872069	144872069	+	RNA	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	8	144872069	144872069	G	C	SNP	ENSG00000214733	ENST00000534089	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.100	-	-	-	no_errors	RP11-429J17.8	Clone_based_vega_gene	ENSG00000214733	tier1	-	-	9	0	0.00	12	10	45.45
ENSG00000214733	0	genome.wustl.edu	37	8	144872149	144872149	+	RNA	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	8	144872149	144872149	G	A	SNP	ENSG00000214733	ENST00000527139	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-429J17.8	Clone_based_vega_gene	ENSG00000214733	tier1	-	-	10	0	0.00	28	19	40.43
ENSG00000215022	0	genome.wustl.edu	37	6	13295560	13295560	+	RNA	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	6	13295560	13295560	G	A	SNP	ENSG00000215022	ENST00000606150	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP1-257A7.4	Clone_based_vega_gene	ENSG00000215022	tier1	-	-	53	0	0.00	47	30	38.96
ENSG00000216089	0	genome.wustl.edu	37	4	160216872	160216873	+	RNA	INS	-	-	GTGT			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	4	160216872	160216873	-	GTGT	INS	ENSG00000216089	ENST00000401270	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.002	-	-	-	no_errors	AC105316.1	Clone_based_ensembl_gene	ENSG00000216089	tier1			19	0	0.00	37	4	9.76
ENSG00000227407	0	genome.wustl.edu	37	19	54942204	54942204	+	RNA	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	19	54942204	54942204	G	A	SNP	ENSG00000227407	ENST00000457113	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC008746.3	Clone_based_vega_gene	ENSG00000227407	tier1	-	-	27	0	0.00	42	22	34.38
ENSG00000230239	0	genome.wustl.edu	37	1	17183282	17183282	+	RNA	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	17183282	17183282	G	A	SNP	ENSG00000230239	ENST00000414128	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.023	-	-	-	no_errors	RP11-108M9.2	Clone_based_vega_gene	ENSG00000230239	tier1	-	-	78	0	0.00	57	7	10.94
ENSG00000230303	0	genome.wustl.edu	37	9	88401221	88401222	+	RNA	INS	-	-	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	9	88401221	88401222	-	C	INS	ENSG00000230303	ENST00000456242	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:0.999	-	-	-	no_errors	RP11-213G2.2	Clone_based_vega_gene	ENSG00000230303	tier1			42	0	0.00	23	17	42.50
ENSG00000232866	0	genome.wustl.edu	37	9	43135138	43135138	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	9	43135138	43135138	C	G	SNP	ENSG00000232866	ENST00000377437	human	ensembl	74_37	+1	novel	missense	c.44	p.S15C	0.236	NULL	NULL	-	no_errors	AL513478.1	Clone_based_ensembl_gene	ENSG00000232866	tier1	-	-	159	0	0.00	110	68	38.20
ENSG00000244227	0	genome.wustl.edu	37	3	167632982	167632982	+	RNA	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	3	167632982	167632982	G	C	SNP	ENSG00000244227	ENST00000459923	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	RP11-298O21.5	Clone_based_vega_gene	ENSG00000244227	tier1	-	-	46	0	0.00	38	12	24.00
ENSG00000260465	0	genome.wustl.edu	37	16	66755061	66755061	+	RNA	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	16	66755061	66755061	G	A	SNP	ENSG00000260465	ENST00000569274	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.120	-	-	-	no_errors	RP11-63M22.2	Clone_based_vega_gene	ENSG00000260465	tier1	-	-	19	0	0.00	15	5	25.00
ENSG00000271880	0	genome.wustl.edu	37	10	88752169	88752169	+	RNA	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	10	88752169	88752169	G	A	SNP	ENSG00000271880	ENST00000433214	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RP11-96C23.5	Clone_based_vega_gene	ENSG00000271880	tier1	-	-	183	0	0.00	102	67	39.64
EPB41L5	0	genome.wustl.edu	37	2	120799600	120799600	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	120799600	120799600	G	A	SNP	EPB41L5	ENST00000263713	human	ensembl	74_37	+1	known	missense	c.199	p.E67K	1.000	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain,prints_Ez/rad/moesin_like	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L5	HGNC	ENSG00000115109	tier1	-	-	57	0	0.00	41	19	31.67
EPHA4	0	genome.wustl.edu	37	2	222433469	222433469	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	222433469	222433469	A	T	SNP	EPHA4	ENST00000281821	human	ensembl	74_37	-1	known	missense	c.128	p.L43H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106	tier1	-	-	57	0	0.00	44	26	37.14
ESPN	0	genome.wustl.edu	37	1	6517321	6517321	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	6517321	6517321	G	C	SNP	ESPN	ENST00000377828	human	ensembl	74_37	+1	known	missense	c.2403	p.E801D	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_WH2_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_WH2_dom	-	no_errors	ESPN	HGNC	ENSG00000187017	tier1	-	-	80	0	0.00	70	46	39.66
FAM230A	0	genome.wustl.edu	37	22	20710110	20710110	+	Silent	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	22	20710110	20710110	G	A	SNP	FAM230A	ENST00000434783	human	ensembl	74_37	+1	known	silent	c.1842	p.P614	0.091	superfamily_Kinase-like_dom	pfam_Ret-finger_pr-like_3_antisense,superfamily_Kinase-like_dom	-	no_errors	FAM230A	HGNC	ENSG00000188280	tier1	-	-	26	0	0.00	43	26	37.68
FLT1	0	genome.wustl.edu	37	13	28908259	28908259	+	Silent	SNP	T	T	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	13	28908259	28908259	T	G	SNP	FLT1	ENST00000282397	human	ensembl	74_37	-1	known	silent	c.2496	p.S832	0.005	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR1_rcpt	-	no_errors	FLT1	HGNC	ENSG00000102755	tier1	-	-	18	0	0.00	4	17	80.95
FLT1	0	genome.wustl.edu	37	13	28880885	28880885	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	13	28880885	28880885	G	T	SNP	FLT1	ENST00000282397	human	ensembl	74_37	-1	known	missense	c.3745	p.L1249M	0.791	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR1_rcpt	-	no_errors	FLT1	HGNC	ENSG00000102755				57	0	0.00	34	3	8.11
FOLH1	0	genome.wustl.edu	37	11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	49204779	49204779	C	T	SNP	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	missense	c.842	p.R281H	0.843	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	tier1	rs116795343	-	62	0	0.00	72	5	6.41
FOLH1	0	genome.wustl.edu	37	11	49204790	49204790	+	Silent	SNP	A	A	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	49204790	49204790	A	G	SNP	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	silent	c.831	p.Y277	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	tier1	rs76509850	-	47	0	0.00	61	6	8.96
FOXH1	0	genome.wustl.edu	37	8	145701071	145701071	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	8	145701071	145701071	C	T	SNP	FOXH1	ENST00000377317	human	ensembl	74_37	-1	known	silent	c.69	p.R23	0.998	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXH1	HGNC	ENSG00000160973	tier1	-	-	48	0	0.00	104	27	20.61
GABRG2	0	genome.wustl.edu	37	5	161522556	161522556	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	5	161522556	161522556	C	A	SNP	GABRG2	ENST00000356592	human	ensembl	74_37	+1	known	missense	c.315	p.N105K	0.994	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327	tier1	-	-	11	0	0.00	3	27	65.85
GJC2	0	genome.wustl.edu	37	1	228346302	228346302	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	228346302	228346302	C	T	SNP	GJC2	ENST00000366714	human	ensembl	74_37	+1	known	silent	c.843	p.L281	0.857	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJC2	HGNC	ENSG00000198835	tier1	-	-	27	0	0.00	33	12	26.67
GOLGA8S	0	genome.wustl.edu	37	15	23605572	23605572	+	Silent	SNP	T	T	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	15	23605572	23605572	T	C	SNP	GOLGA8S	ENST00000562295	human	ensembl	74_37	+1	novel	silent	c.679	p.L227	0.872	NULL	NULL	-	no_errors	GOLGA8S	HGNC	ENSG00000261739	tier1	-	-	66	0	0.00	54	21	28.00
GPBP1	0	genome.wustl.edu	37	5	56545287	56545287	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	5	56545287	56545287	C	T	SNP	GPBP1	ENST00000424459	human	ensembl	74_37	+1	known	missense	c.916	p.R306C	1.000	NULL	NULL	-	no_errors	GPBP1	HGNC	ENSG00000062194	tier1	-	-	56	0	0.00	26	22	45.83
GPR149	0	genome.wustl.edu	37	3	154146875	154146875	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	3	154146875	154146875	C	G	SNP	GPR149	ENST00000389740	human	ensembl	74_37	-1	known	missense	c.530	p.R177P	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR149	HGNC	ENSG00000174948	tier1	-	-	73	0	0.00	53	40	43.01
GPR52	0	genome.wustl.edu	37	1	174418064	174418064	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	174418064	174418064	G	A	SNP	GPR52	ENST00000367685	human	ensembl	74_37	+1	known	missense	c.815	p.S272N	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR52	HGNC	ENSG00000203737	tier1	-	-	25	0	0.00	30	15	33.33
GRIN2D	0	genome.wustl.edu	37	19	48945210	48945210	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	19	48945210	48945210	G	A	SNP	GRIN2D	ENST00000263269	human	ensembl	74_37	+1	known	missense	c.2437	p.D813N	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464	tier1	-	-	30	0	0.00	40	11	21.57
GSN	0	genome.wustl.edu	37	9	124074856	124074857	+	RNA	INS	-	-	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	9	124074856	124074857	-	A	INS	GSN	ENST00000485767	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.000	-	-	-	no_errors	GSN	HGNC	ENSG00000148180	tier1			10	0	0.00	11	3	21.43
HACE1	0	genome.wustl.edu	37	6	105177163	105177163	+	RNA	SNP	T	T	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	6	105177163	105177163	T	C	SNP	HACE1	ENST00000517995	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	HACE1	HGNC	ENSG00000085382	tier1	-	-	49	0	0.00	35	20	36.36
HMGB1P5	0	genome.wustl.edu	37	3	22423504	22423504	+	RNA	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	3	22423504	22423504	G	A	SNP	HMGB1P5	ENST00000451497	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGB1P5	HGNC	ENSG00000132967	tier1	-	-	54	0	0.00	39	27	40.91
HOMER1	0	genome.wustl.edu	37	5	78752821	78752821	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	5	78752821	78752821	G	T	SNP	HOMER1	ENST00000334082	human	ensembl	74_37	-1	known	missense	c.26	p.T9N	1.000	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	HOMER1	HGNC	ENSG00000152413				79	0	0.00	55	3	5.17
HOXC10	0	genome.wustl.edu	37	12	54383371	54383371	+	RNA	SNP	T	T	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	12	54383371	54383371	T	A	SNP	HOXC10	ENST00000511575	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HOXC10	HGNC	ENSG00000180818	tier1	-	-	24	0	0.00	13	19	59.38
HOXC11	0	genome.wustl.edu	37	12	54369204	54369204	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	12	54369204	54369204	G	C	SNP	HOXC11	ENST00000243082	human	ensembl	74_37	+1	novel	missense	c.926	p.R309T	0.612	NULL	pfam_DUF3528	-	no_errors	HOXC11	HGNC	ENSG00000123388	tier1	-	-	23	0	0.00	19	11	36.67
HSPA1B	0	genome.wustl.edu	37	6	31797494	31797494	+	Silent	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	6	31797494	31797494	G	A	SNP	HSPA1B	ENST00000375650	human	ensembl	74_37	+1	known	silent	c.1767	p.K589	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA1B	HGNC	ENSG00000204388	tier1	-	-	54	0	0.00	55	31	36.05
HSPG2	0	genome.wustl.edu	37	1	22202445	22202445	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	22202445	22202445	G	T	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.3094	p.L1032M	0.997	pfam_Laminin_B_type_IV,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				56	0	0.00	76	4	5.00
IFI27	0	genome.wustl.edu	37	14	94582128	94582128	+	Splice_Site	SNP	T	T	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	14	94582128	94582128	T	G	SNP	IFI27	ENST00000444961	human	ensembl	74_37	+1	known	splice_site	c.134-2	e3-2	0.000	-	-	-	no_errors	IFI27	HGNC	ENSG00000165949				53	0	0.00	58	5	7.94
IGDCC4	0	genome.wustl.edu	37	15	65674432	65674433	+	RNA	INS	-	-	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	15	65674432	65674433	-	A	INS	IGDCC4	ENST00000558048	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	IGDCC4	HGNC	ENSG00000103742	tier1			23	0	0.00	24	4	14.29
IGFBP4	0	genome.wustl.edu	37	17	38612738	38612738	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	17	38612738	38612738	G	T	SNP	IGFBP4	ENST00000269593	human	ensembl	74_37	+1	known	missense	c.680	p.W227L	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP-4	-	no_errors	IGFBP4	HGNC	ENSG00000141753				26	0	0.00	56	4	6.67
IGFN1	0	genome.wustl.edu	37	1	201185638	201185638	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	201185638	201185638	G	A	SNP	IGFN1	ENST00000335211	human	ensembl	74_37	+1	known	missense	c.9352	p.V3118I	0.080	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGFN1	HGNC	ENSG00000163395	tier1	-	-	63	0	0.00	84	30	26.32
IGSF9B	0	genome.wustl.edu	37	11	133796853	133796853	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	133796853	133796853	C	A	SNP	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	nonsense	c.1765	p.G589*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9B	HGNC	ENSG00000080854	tier1	-	-	41	0	0.00	43	25	36.76
IL6ST	0	genome.wustl.edu	37	5	55260105	55260105	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	5	55260105	55260105	C	T	SNP	IL6ST	ENST00000336909	human	ensembl	74_37	-1	known	missense	c.527	p.R176H	0.193	pfam_IL-6_rcpt_alpha-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC	ENSG00000134352				36	0	0.00	23	2	8.00
IQCB1	0	genome.wustl.edu	37	3	121547357	121547357	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	3	121547357	121547357	C	T	SNP	IQCB1	ENST00000310864	human	ensembl	74_37	-1	known	missense	c.223	p.G75S	1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCB1	HGNC	ENSG00000173226	tier1	-	-	71	0	0.00	73	5	6.41
KIF17	0	genome.wustl.edu	37	1	21042067	21042067	+	Silent	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	21042067	21042067	G	A	SNP	KIF17	ENST00000247986	human	ensembl	74_37	-1	known	silent	c.297	p.F99	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245	tier1	-	-	37	0	0.00	47	15	24.19
KIF26A	0	genome.wustl.edu	37	14	104640529	104640529	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	14	104640529	104640529	C	T	SNP	KIF26A	ENST00000423312	human	ensembl	74_37	+1	known	missense	c.2075	p.A692V	0.992	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF26A	HGNC	ENSG00000066735	tier1	-	-	84	0	0.00	32	110	77.46
KLF11	0	genome.wustl.edu	37	2	10187774	10187775	+	Splice_Site	INS	-	-	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	10187774	10187775	-	A	INS	KLF11	ENST00000305883	human	ensembl	74_37	+1	known	splice_site_ins	c.313-3_313-2	e3-2	0.309:1.000	-	-	-	no_errors	KLF11	HGNC	ENSG00000172059	tier1			43	0	0.00	32	13	28.89
KLHL28	0	genome.wustl.edu	37	14	45400680	45400680	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	14	45400680	45400680	T	A	SNP	KLHL28	ENST00000396128	human	ensembl	74_37	-1	known	missense	c.1408	p.I470F	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL28	HGNC	ENSG00000179454				35	0	0.00	36	2	5.26
KMT2D	0	genome.wustl.edu	37	12	49435976	49435976	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	12	49435976	49435976	C	A	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.6005	p.S2002I	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548	tier1	-	-	26	0	0.00	18	21	53.85
KRTAP9-9	0	genome.wustl.edu	37	17	39411984	39411984	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	17	39411984	39411984	A	G	SNP	KRTAP9-9	ENST00000394008	human	ensembl	74_37	+1	known	missense	c.347	p.Y116C	0.988	NULL	NULL	-	no_errors	KRTAP9-9	HGNC	ENSG00000198083	tier1	-	-	117	0	0.00	112	118	51.08
KSR1	0	genome.wustl.edu	37	17	25936279	25936279	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	17	25936279	25936279	G	A	SNP	KSR1	ENST00000319524	human	ensembl	74_37	+1	known	missense	c.2215	p.V739I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	KSR1	HGNC	ENSG00000141068	tier1	rs200491363	-	62	0	0.00	79	21	21.00
LINC00634	0	genome.wustl.edu	37	22	42353815	42353815	+	RNA	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	22	42353815	42353815	G	A	SNP	LINC00634	ENST00000381348	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00634	HGNC	ENSG00000205704	tier1	-	-	45	0	0.00	65	4	5.80
LOC100190940	0	genome.wustl.edu	37	12	130520932	130520932	+	RNA	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	12	130520932	130520932	G	C	SNP	LOC100190940	ENST00000291374	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-474D1.3	Clone_based_vega_gene	ENSG00000214039	tier1	-	-	32	0	0.00	28	8	21.62
LOC100288897	0	genome.wustl.edu	37	2	131175859	131175859	+	RNA	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	131175859	131175859	C	T	SNP	LOC100288897	ENST00000423905	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	AC140481.1	Clone_based_vega_gene	ENSG00000178162	tier1	-	-	28	0	0.00	32	14	30.43
LOC400043	0	genome.wustl.edu	37	12	54520191	54520191	+	RNA	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	12	54520191	54520191	G	A	SNP	LOC400043	ENST00000508564	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-834C11.4	Clone_based_vega_gene	ENSG00000250742	tier1	-	-	26	0	0.00	13	5	27.78
LOXHD1	0	genome.wustl.edu	37	18	44140157	44140157	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	18	44140157	44140157	G	A	SNP	LOXHD1	ENST00000536736	human	ensembl	74_37	-1	known	nonsense	c.2950	p.Q984*	1.000	NULL	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	-	no_errors	LOXHD1	HGNC	ENSG00000167210	tier1	-	-	46	0	0.00	59	4	6.35
LPO	0	genome.wustl.edu	37	17	56343639	56343639	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	17	56343639	56343639	G	A	SNP	LPO	ENST00000262290	human	ensembl	74_37	+1	known	missense	c.1645	p.D549N	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419	tier1	-	-	30	0	0.00	34	8	19.05
LUC7L	0	genome.wustl.edu	37	16	239289	239289	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	16	239289	239289	T	A	SNP	LUC7L	ENST00000293872	human	ensembl	74_37	-1	known	missense	c.1024	p.S342C	0.911	NULL	pfam_Luc7-rel	-	no_errors	LUC7L	HGNC	ENSG00000007392	tier1	-	-	56	0	0.00	29	31	51.67
MED1	0	genome.wustl.edu	37	17	37564050	37564050	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	17	37564050	37564050	G	A	SNP	MED1	ENST00000300651	human	ensembl	74_37	-1	known	missense	c.4424	p.S1475F	1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686	tier1	-	-	26	0	0.00	23	26	53.06
MED21	0	genome.wustl.edu	37	12	27175645	27175645	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	12	27175645	27175645	G	T	SNP	MED21	ENST00000536711	human	ensembl	74_37	+1	known	missense	c.133	p.G45W	0.000	NULL	NULL	-	no_errors	MED21	HGNC	ENSG00000152944	tier1	-	-	12	0	0.00	12	6	33.33
MEGF11	0	genome.wustl.edu	37	15	66249960	66249960	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	15	66249960	66249960	C	T	SNP	MEGF11	ENST00000409699	human	ensembl	74_37	-1	known	silent	c.1212	p.Q404	1.000	smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890				44	0	0.00	52	3	5.45
METTL15	0	genome.wustl.edu	37	11	28232685	28232685	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	28232685	28232685	A	G	SNP	METTL15	ENST00000303459	human	ensembl	74_37	+1	known	missense	c.347	p.Y116C	0.716	pfam_RsmH,tigrfam_RsmH	pfam_RsmH,superfamily_SAM-dep_MeTrfase_MraW_recog,tigrfam_RsmH	-	no_errors	METTL15	HGNC	ENSG00000169519	tier1	-	-	105	0	0.00	56	35	38.46
MIA3	0	genome.wustl.edu	37	1	222819066	222819066	+	RNA	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	222819066	222819066	G	T	SNP	MIA3	ENST00000470521	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIA3	HGNC	ENSG00000154305	tier1	-	-	95	0	0.00	78	73	48.34
MMS22L	0	genome.wustl.edu	37	6	97599743	97599743	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	6	97599743	97599743	A	T	SNP	MMS22L	ENST00000275053	human	ensembl	74_37	-1	known	missense	c.3386	p.V1129D	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MMS22L	HGNC	ENSG00000146263	tier1	-	-	41	0	0.00	24	18	42.86
MMS22L	0	genome.wustl.edu	37	6	97613184	97613184	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	6	97613184	97613184	C	G	SNP	MMS22L	ENST00000275053	human	ensembl	74_37	-1	known	missense	c.3159	p.L1053F	0.965	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MMS22L	HGNC	ENSG00000146263	tier1	-	-	60	0	0.00	53	32	37.65
MTIF2	0	genome.wustl.edu	37	2	55470218	55470218	+	Splice_Site	SNP	T	T	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	55470218	55470218	T	C	SNP	MTIF2	ENST00000263629	human	ensembl	74_37	-1	known	splice_site	c.1565-2	e10-2	1.000	-	-	-	no_errors	MTIF2	HGNC	ENSG00000085760	tier1	-	-	12	0	0.00	13	12	48.00
MUC4	0	genome.wustl.edu	37	3	195509726	195509726	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	3	195509726	195509726	C	T	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.8725	p.D2909N	0.125	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	381	0	0.00	445	74	13.96
MUC4	0	genome.wustl.edu	37	3	195518038	195518038	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	3	195518038	195518038	A	G	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.413	p.I138T	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	106	0	0.00	85	57	40.14
MYH11	0	genome.wustl.edu	37	16	15854505	15854505	+	Silent	SNP	T	T	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	16	15854505	15854505	T	C	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	silent	c.1161	p.K387	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392	tier1	-	-	106	0	0.00	83	50	37.59
MYH14	0	genome.wustl.edu	37	19	50783319	50783319	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	19	50783319	50783319	C	T	SNP	MYH14	ENST00000262269	human	ensembl	74_37	+1	known	missense	c.4058	p.A1353V	0.012	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	tier1	-	-	52	0	0.00	73	16	17.98
MYH14	0	genome.wustl.edu	37	19	50785086	50785086	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	19	50785086	50785086	G	A	SNP	MYH14	ENST00000262269	human	ensembl	74_37	+1	known	missense	c.4526	p.R1509H	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	tier1	-	-	32	0	0.00	58	4	6.45
N4BP2L1	0	genome.wustl.edu	37	13	32976725	32976725	+	RNA	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	13	32976725	32976725	G	A	SNP	N4BP2L1	ENST00000459716	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.190	-	-	-	no_errors	N4BP2L1	HGNC	ENSG00000139597	tier1	-	-	8	0	0.00	2	12	85.71
NEB	0	genome.wustl.edu	37	2	152411479	152411479	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	152411479	152411479	G	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.19394	p.A6465V	0.991	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				98	0	0.00	87	5	5.43
NEDD8-MDP1	0	genome.wustl.edu	37	14	24687342	24687342	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	14	24687342	24687342	T	C	SNP	NEDD8-MDP1	ENST00000605847	human	ensembl	74_37	-1	known	missense	c.146	p.Q49R	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	NEDD8-MDP1	HGNC	ENSG00000255526	tier1	-	-	27	0	0.00	13	49	79.03
NEU4	0	genome.wustl.edu	37	2	242756095	242756095	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	242756095	242756095	G	T	SNP	NEU4	ENST00000325935	human	ensembl	74_37	+1	known	missense	c.247	p.A83S	0.029	superfamily_Sialidases	superfamily_Sialidases	-	no_errors	NEU4	HGNC	ENSG00000204099	tier1	-	-	75	0	0.00	50	39	43.82
NOC3L	0	genome.wustl.edu	37	10	96100090	96100090	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	10	96100090	96100090	T	C	SNP	NOC3L	ENST00000371350	human	ensembl	74_37	-1	known	missense	c.1723	p.I575V	1.000	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	pfam_CCAAT-binding_factor,pfam_NOC3p,superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	-	no_errors	NOC3L	HGNC	ENSG00000173145	tier1	-	-	92	0	0.00	66	47	41.59
NUDT8	0	genome.wustl.edu	37	11	67395589	67395589	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	67395589	67395589	C	A	SNP	NUDT8	ENST00000376693	human	ensembl	74_37	-1	known	missense	c.539	p.G180V	0.998	superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT8	HGNC	ENSG00000167799	tier1	-	-	52	0	0.00	73	40	35.40
OR1L6	0	genome.wustl.edu	37	9	125512921	125512921	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	9	125512921	125512921	C	T	SNP	OR1L6	ENST00000373684	human	ensembl	74_37	+1	known	silent	c.903	p.S301	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L6	HGNC	ENSG00000171459	tier1	-	-	64	0	0.00	75	4	5.06
OR2G6	0	genome.wustl.edu	37	1	248685431	248685431	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	248685431	248685431	C	T	SNP	OR2G6	ENST00000343414	human	ensembl	74_37	+1	known	missense	c.484	p.L162F	0.410	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558	tier1	-	-	33	0	0.00	54	22	28.95
OR4K1	0	genome.wustl.edu	37	14	20404131	20404131	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	14	20404131	20404131	C	T	SNP	OR4K1	ENST00000285600	human	ensembl	74_37	+1	known	silent	c.306	p.F102	0.037	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249	tier1	-	-	48	0	0.00	73	37	33.64
OR5T3	0	genome.wustl.edu	37	11	56020398	56020398	+	Silent	SNP	C	C	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	56020398	56020398	C	A	SNP	OR5T3	ENST00000303059	human	ensembl	74_37	+1	known	silent	c.723	p.I241	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T3	HGNC	ENSG00000172489	tier1	-	-	79	0	0.00	70	45	39.13
OSBPL3	0	genome.wustl.edu	37	7	24903154	24903155	+	Frame_Shift_Ins	INS	-	-	AGGA			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	24903154	24903155	-	AGGA	INS	OSBPL3	ENST00000313367	human	ensembl	74_37	-1	known	frame_shift_ins	c.738_737	p.H247fs	0.998:1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882	tier1			31	0	0.00	84	18	17.65
PABPC1	0	genome.wustl.edu	37	8	101725016	101725016	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	8	101725016	101725016	G	T	SNP	PABPC1	ENST00000318607	human	ensembl	74_37	-1	known	missense	c.740	p.A247D	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1	HGNC	ENSG00000070756	tier1	-	-	17	0	0.00	13	9	40.91
PAK4	0	genome.wustl.edu	37	19	39665640	39665640	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	19	39665640	39665640	G	A	SNP	PAK4	ENST00000358301	human	ensembl	74_37	+1	known	missense	c.1168	p.E390K	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK4	HGNC	ENSG00000130669	tier1	-	-	47	0	0.00	53	15	22.06
PARP14	0	genome.wustl.edu	37	3	122447375	122447375	+	Silent	SNP	T	T	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	3	122447375	122447375	T	C	SNP	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	silent	c.5337	p.H1779	0.008	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193	tier1	-	-	75	0	0.00	37	32	45.71
PAXIP1	0	genome.wustl.edu	37	7	154746044	154746044	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	154746044	154746044	G	C	SNP	PAXIP1	ENST00000397192	human	ensembl	74_37	-1	known	missense	c.2742	p.F914L	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PAXIP1	HGNC	ENSG00000157212	tier1	-	-	43	0	0.00	63	23	26.74
PCDHB2	0	genome.wustl.edu	37	5	140476527	140476527	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	5	140476527	140476527	G	C	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	missense	c.2153	p.R718T	0.558	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852	tier1	-	-	135	0	0.00	62	63	50.40
PDE3B	0	genome.wustl.edu	37	11	14793546	14793547	+	RNA	INS	-	-	AT			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	14793546	14793547	-	AT	INS	PDE3B	ENST00000534317	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000:0.019	-	-	-	no_errors	PDE3B	HGNC	ENSG00000152270	tier1			82	0	0.00	73	24	24.74
PGM5	0	genome.wustl.edu	37	9	71006576	71006576	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	9	71006576	71006576	C	T	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.824	p.T275M	0.979	pfam_A-D-PHexomutase_a/b/a-II	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				113	0	0.00	102	6	5.56
PHF14	0	genome.wustl.edu	37	7	11143171	11143171	+	RNA	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	11143171	11143171	C	G	SNP	PHF14	ENST00000481418	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PHF14	HGNC	ENSG00000106443	tier1	-	-	61	0	0.00	59	27	31.40
PHYHIPL	0	genome.wustl.edu	37	10	60994160	60994161	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	10	60994160	60994161	TT	-	DEL	PHYHIPL	ENST00000373880	human	ensembl	74_37	+1	known	frame_shift_del	c.203_204	p.S69fs	1.000:1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PHYHIPL	HGNC	ENSG00000165443	tier1			36	0	0.00	36	6	14.29
PKD2	0	genome.wustl.edu	37	4	88977399	88977399	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	4	88977399	88977399	C	T	SNP	PKD2	ENST00000237596	human	ensembl	74_37	+1	known	silent	c.1878	p.F626	1.000	pfam_PKD1_2_channel,pfam_Ion_trans_dom	pfam_PKD1_2_channel,pfam_Ion_trans_dom,pfscan_EF_hand_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2	HGNC	ENSG00000118762	tier1	-	-	23	0	0.00	14	9	39.13
PLXNA4	0	genome.wustl.edu	37	7	131848918	131848918	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	131848918	131848918	T	A	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.4483	p.I1495F	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866	tier1	-	-	47	0	0.00	37	42	53.16
PNCK	0	genome.wustl.edu	37	X	152938410	152938411	+	RNA	DEL	AC	AC	-			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	X	152938410	152938411	AC	-	DEL	PNCK	ENST00000462280	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001:0.002	-	-	-	no_errors	PNCK	HGNC	ENSG00000130822	tier1			21	0	0.00	21	6	22.22
POLQ	0	genome.wustl.edu	37	3	121260276	121260276	+	Silent	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	3	121260276	121260276	G	T	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	silent	c.394	p.R132	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	tier1	-	-	23	0	0.00	24	4	14.29
PRMT3	0	genome.wustl.edu	37	11	20414545	20414545	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	20414545	20414545	G	T	SNP	PRMT3	ENST00000331079	human	ensembl	74_37	+1	known	missense	c.400	p.D134Y	1.000	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_mo5U34_MeTrfas-like,pfam_Methyltransf_11,pfam_Arg_MeTrfase,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT3	HGNC	ENSG00000185238	tier1	-	-	57	0	0.00	65	4	5.80
PROS1	0	genome.wustl.edu	37	3	93624933	93624933	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	3	93624933	93624933	C	T	SNP	PROS1	ENST00000394236	human	ensembl	74_37	-1	known	missense	c.401	p.C134Y	1.000	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	PROS1	HGNC	ENSG00000184500	tier1	-	-	32	0	0.00	47	4	7.84
PRSS51	0	genome.wustl.edu	37	8	10355353	10355353	+	RNA	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	8	10355353	10355353	C	G	SNP	PRSS51	ENST00000523024	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.828	-	-	-	no_errors	PRSS51	HGNC	ENSG00000253649	tier1	-	-	80	0	0.00	143	68	32.23
PSMC4	0	genome.wustl.edu	37	19	40477127	40477127	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	19	40477127	40477127	C	G	SNP	PSMC4	ENST00000157812	human	ensembl	74_37	+1	known	missense	c.18	p.I6M	0.972	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275	tier1	-	-	61	0	0.00	90	51	36.17
PTH2R	0	genome.wustl.edu	37	2	209224558	209224558	+	RNA	SNP	A	A	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	209224558	209224558	A	T	SNP	PTH2R	ENST00000413482	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	PTH2R	HGNC	ENSG00000144407	tier1	-	-	8	0	0.00	2	4	66.67
PTMA	0	genome.wustl.edu	37	2	232573421	232573421	+	Nonsense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	232573421	232573421	C	G	SNP	PTMA	ENST00000341369	human	ensembl	74_37	+1	known	nonsense	c.5	p.S2*	1.000	pfam_Pro/parathymosin	pfam_Pro/parathymosin	-	no_errors	PTMA	HGNC	ENSG00000187514	tier1	-	-	24	0	0.00	17	6	26.09
PTPRM	0	genome.wustl.edu	37	18	8244113	8244113	+	Silent	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	18	8244113	8244113	G	A	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	silent	c.2358	p.V786	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	tier1	-	-	81	0	0.00	76	30	28.30
PYY	0	genome.wustl.edu	37	17	42030684	42030684	+	Silent	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	17	42030684	42030684	G	C	SNP	PYY	ENST00000360085	human	ensembl	74_37	-1	known	silent	c.168	p.L56	1.000	pfam_Pancreatic_hormone-like,smart_Pancreatic_hormone-like,pfscan_Pancreatic_hormone-like,prints_Pancreatic_hormone-like	pfam_Pancreatic_hormone-like,smart_Pancreatic_hormone-like,pfscan_Pancreatic_hormone-like,prints_Pancreatic_hormone-like	-	no_errors	PYY	HGNC	ENSG00000131096	tier1	-	-	19	0	0.00	40	16	28.57
RAB13	0	genome.wustl.edu	37	1	153954779	153954782	+	RNA	DEL	ACAC	ACAC	-			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	ACAC	ACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	153954779	153954782	ACAC	-	DEL	RAB13	ENST00000462680	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001:0.000:0.002	-	-	-	no_errors	RAB13	HGNC	ENSG00000143545	tier1			26	0	0.00	27	3	10.00
RAB3GAP2	0	genome.wustl.edu	37	1	220440993	220440993	+	RNA	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	220440993	220440993	G	T	SNP	RAB3GAP2	ENST00000462353	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	tier1	-	-	34	0	0.00	50	13	20.63
RARS	0	genome.wustl.edu	37	5	167929026	167929026	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	5	167929026	167929026	G	T	SNP	RARS	ENST00000231572	human	ensembl	74_37	+1	known	missense	c.973	p.A325S	0.959	pfam_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-ligase_Ia	pfam_Arg-tRNA-synth_Ia_core,pfam_DALR_anticod-bd,pfam_Arg-tRNA-synth_N,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Arg-tRNA-synth_N,smart_DALR_anticod-bd,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-ligase_Ia	-	no_errors	RARS	HGNC	ENSG00000113643				62	0	0.00	29	2	6.45
RASA1	0	genome.wustl.edu	37	5	86645150	86645150	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	5	86645150	86645150	C	T	SNP	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	nonsense	c.1222	p.Q408*	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715	tier1	-	-	41	0	0.00	13	15	53.57
RASAL2	0	genome.wustl.edu	37	1	178426981	178426981	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	178426981	178426981	G	A	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	missense	c.2554	p.D852N	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	tier1	-	-	25	0	0.00	34	14	29.17
RASAL2	0	genome.wustl.edu	37	1	178427011	178427011	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	178427011	178427011	G	C	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	missense	c.2584	p.E862Q	0.985	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	tier1	-	-	23	0	0.00	29	11	27.50
RCOR3	0	genome.wustl.edu	37	1	211447585	211447585	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	211447585	211447585	A	G	SNP	RCOR3	ENST00000367005	human	ensembl	74_37	+1	known	missense	c.161	p.H54R	1.000	pfscan_ELM2_dom	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	RCOR3	HGNC	ENSG00000117625	tier1	-	-	80	0	0.00	91	31	25.41
RELN	0	genome.wustl.edu	37	7	103159843	103159843	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	103159843	103159843	C	T	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.7789	p.E2597K	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	tier1	-	-	70	0	0.00	113	28	19.86
RHBDD2	0	genome.wustl.edu	37	7	75512836	75512837	+	RNA	INS	-	-	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	75512836	75512837	-	A	INS	RHBDD2	ENST00000467406	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.001:0.010	-	-	-	no_errors	RHBDD2	HGNC	ENSG00000005486	tier1			11	0	0.00	26	5	16.13
RHPN1	0	genome.wustl.edu	37	8	144464122	144464122	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	8	144464122	144464122	C	G	SNP	RHPN1	ENST00000289013	human	ensembl	74_37	+1	known	missense	c.1781	p.S594C	0.022	NULL	pfam_BRO1_dom,pfam_HR1_rho-bd,pfam_PDZ,superfamily_PDZ,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom,pfscan_PDZ	-	no_errors	RHPN1	HGNC	ENSG00000158106	tier1	-	-	38	0	0.00	61	47	43.52
RHPN1	0	genome.wustl.edu	37	8	144464685	144464685	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	8	144464685	144464685	C	G	SNP	RHPN1	ENST00000289013	human	ensembl	74_37	+1	known	missense	c.1877	p.S626C	0.001	NULL	pfam_BRO1_dom,pfam_HR1_rho-bd,pfam_PDZ,superfamily_PDZ,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom,pfscan_PDZ	-	no_errors	RHPN1	HGNC	ENSG00000158106	tier1	-	-	15	0	0.00	28	18	39.13
RIMBP2	0	genome.wustl.edu	37	12	130921539	130921539	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	12	130921539	130921539	G	T	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	missense	c.1903	p.H635N	0.857	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709				36	0	0.00	46	3	6.12
RIMKLA	0	genome.wustl.edu	37	1	42880277	42880277	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	42880277	42880277	G	T	SNP	RIMKLA	ENST00000431473	human	ensembl	74_37	+1	known	missense	c.808	p.V270L	0.999	pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	-	no_errors	RIMKLA	HGNC	ENSG00000177181				64	0	0.00	64	4	5.88
SALL1	0	genome.wustl.edu	37	16	51173802	51173802	+	Silent	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	16	51173802	51173802	G	A	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	silent	c.2331	p.N777	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	tier1	rs144747142	-	54	0	0.00	43	22	33.85
SCN4B	0	genome.wustl.edu	37	11	118006753	118006753	+	RNA	DEL	G	G	-			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	118006753	118006753	G	-	DEL	SCN4B	ENST00000423160	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	SCN4B	HGNC	ENSG00000177098	tier1			14	0	0.00	23	7	23.33
SCUBE3	0	genome.wustl.edu	37	6	35211826	35211826	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	6	35211826	35211826	C	T	SNP	SCUBE3	ENST00000394681	human	ensembl	74_37	+1	known	missense	c.2206	p.R736W	1.000	pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Growth_fac_rcpt_N_dom	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	SCUBE3	HGNC	ENSG00000146197	tier1	-	-	39	0	0.00	41	14	25.45
SEC31A	0	genome.wustl.edu	37	4	83776067	83776067	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	4	83776067	83776067	G	A	SNP	SEC31A	ENST00000432794	human	ensembl	74_37	-1	known	missense	c.1997	p.S666L	0.985	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674	tier1	-	-	58	0	0.00	15	31	67.39
SEMA4D	0	genome.wustl.edu	37	9	91994288	91994288	+	Silent	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	9	91994288	91994288	G	T	SNP	SEMA4D	ENST00000356444	human	ensembl	74_37	-1	known	silent	c.1920	p.A640	0.925	smart_Ig_sub	pfam_Semap_dom,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4D	HGNC	ENSG00000187764				56	0	0.00	60	4	6.15
SEMA5A	0	genome.wustl.edu	37	5	9043022	9043022	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	5	9043022	9043022	T	A	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	missense	c.3212	p.Y1071F	1.000	NULL	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	tier1	-	-	69	0	0.00	98	72	42.35
SIPA1L2	0	genome.wustl.edu	37	1	232579369	232579369	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	232579369	232579369	C	T	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.3416	p.R1139K	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	tier1	-	-	22	0	0.00	47	9	16.07
SLA2	0	genome.wustl.edu	37	20	35242308	35242308	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	20	35242308	35242308	G	C	SNP	SLA2	ENST00000262866	human	ensembl	74_37	-1	known	missense	c.747	p.I249M	1.000	NULL	pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2	-	no_errors	SLA2	HGNC	ENSG00000101082	tier1	-	-	40	0	0.00	39	23	37.10
SLA2	0	genome.wustl.edu	37	20	35242375	35242375	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	20	35242375	35242375	G	C	SNP	SLA2	ENST00000262866	human	ensembl	74_37	-1	known	missense	c.680	p.S227C	0.029	NULL	pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2	-	no_errors	SLA2	HGNC	ENSG00000101082	tier1	-	-	39	0	0.00	31	9	22.50
SLA2	0	genome.wustl.edu	37	20	35242776	35242776	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	20	35242776	35242776	G	C	SNP	SLA2	ENST00000360672	human	ensembl	74_37	-1	known	missense	c.547	p.P183A	0.056	NULL	pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2	-	no_errors	SLA2	HGNC	ENSG00000101082	tier1	-	-	72	0	0.00	86	30	25.86
SLA2	0	genome.wustl.edu	37	20	35242812	35242812	+	Silent	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	20	35242812	35242812	G	C	SNP	SLA2	ENST00000262866	human	ensembl	74_37	-1	known	silent	c.561	p.L187	0.996	pfscan_SH2	pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2	-	no_errors	SLA2	HGNC	ENSG00000101082	tier1	-	-	61	0	0.00	62	23	27.06
SLA2	0	genome.wustl.edu	37	20	35242824	35242824	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	20	35242824	35242824	G	C	SNP	SLA2	ENST00000262866	human	ensembl	74_37	-1	known	missense	c.549	p.I183M	1.000	pfscan_SH2	pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2	-	no_errors	SLA2	HGNC	ENSG00000101082	tier1	-	-	59	0	0.00	56	20	26.32
SLAMF6	0	genome.wustl.edu	37	1	160465850	160465850	+	Splice_Site	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	160465850	160465850	C	G	SNP	SLAMF6	ENST00000368057	human	ensembl	74_37	-1	known	splice_site	c.382+1	e2+1	0.956	-	-	-	no_errors	SLAMF6	HGNC	ENSG00000162739	tier1	-	-	80	0	0.00	102	27	20.93
SLC12A5	0	genome.wustl.edu	37	20	44674582	44674582	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	20	44674582	44674582	C	T	SNP	SLC12A5	ENST00000454036	human	ensembl	74_37	+1	known	silent	c.1704	p.C568	0.885	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	tier1	-	-	37	0	0.00	53	28	34.57
SMARCA2	0	genome.wustl.edu	37	9	2056795	2056795	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	9	2056795	2056795	G	T	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	nonsense	c.1297	p.E433*	1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	tier1	-	-	68	0	0.00	39	4	9.30
SNORD3D	0	genome.wustl.edu	37	17	19015811	19015811	+	RNA	SNP	A	A	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	17	19015811	19015811	A	G	SNP	SNORD3D	ENST00000362793	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	SNORD3D	HGNC	ENSG00000262202	tier1	-	-	14	0	0.00	5	6	54.55
SNORD3D	0	genome.wustl.edu	37	17	19015833	19015833	+	RNA	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	17	19015833	19015833	G	A	SNP	SNORD3D	ENST00000362793	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.042	-	-	-	no_errors	SNORD3D	HGNC	ENSG00000262202	tier1	-	-	13	0	0.00	2	7	77.78
SNX13	0	genome.wustl.edu	37	7	17929992	17929992	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	17929992	17929992	G	C	SNP	SNX13	ENST00000428135	human	ensembl	74_37	-1	known	missense	c.434	p.A145G	1.000	pfam_Phox_assoc,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,pfscan_Phox_assoc	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX13	HGNC	ENSG00000071189	tier1	-	-	43	0	0.00	26	32	55.17
SNX13	0	genome.wustl.edu	37	7	17929993	17929993	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	17929993	17929993	C	T	SNP	SNX13	ENST00000428135	human	ensembl	74_37	-1	known	missense	c.433	p.A145T	1.000	pfam_Phox_assoc,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,pfscan_Phox_assoc	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX13	HGNC	ENSG00000071189	tier1	-	-	42	0	0.00	27	30	52.63
SP3	0	genome.wustl.edu	37	2	174774748	174774748	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	2	174774748	174774748	G	C	SNP	SP3	ENST00000310015	human	ensembl	74_37	-1	known	missense	c.2267	p.T756S	1.000	NULL	pfam_Znf_C2H2,superfamily_Galactose-bd-like,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP3	HGNC	ENSG00000172845	tier1	-	-	34	0	0.00	21	11	34.38
SPATA31E1	0	genome.wustl.edu	37	9	90502183	90502183	+	Silent	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	9	90502183	90502183	G	A	SNP	SPATA31E1	ENST00000325643	human	ensembl	74_37	+1	known	silent	c.2781	p.Q927	0.000	NULL	NULL	-	no_errors	SPATA31E1	HGNC	ENSG00000177992	tier1	-	-	13	0	0.00	21	15	41.67
SPDYC	0	genome.wustl.edu	37	11	64938815	64938815	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	64938815	64938815	C	T	SNP	SPDYC	ENST00000377185	human	ensembl	74_37	+1	known	missense	c.44	p.S15F	0.353	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYC	HGNC	ENSG00000204710	tier1	-	-	30	0	0.00	18	25	58.14
SRCAP	0	genome.wustl.edu	37	16	30734343	30734343	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	16	30734343	30734343	C	T	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.3952	p.R1318W	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	tier1	-	-	46	0	0.00	59	16	21.33
SSPO	0	genome.wustl.edu	37	7	149512296	149512296	+	RNA	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	7	149512296	149512296	G	C	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	tier1	-	-	29	0	0.00	55	19	25.68
SUPV3L1	0	genome.wustl.edu	37	10	70968804	70968805	+	RNA	INS	-	-	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	10	70968804	70968805	-	T	INS	SUPV3L1	ENST00000497254	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013:0.002	-	-	-	no_errors	SUPV3L1	HGNC	ENSG00000156502	tier1			9	0	0.00	10	4	28.57
SWT1	0	genome.wustl.edu	37	1	185144184	185144184	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	185144184	185144184	G	A	SNP	SWT1	ENST00000367500	human	ensembl	74_37	+1	known	missense	c.905	p.R302Q	0.104	NULL	smart_PIN_dom	-	no_errors	SWT1	HGNC	ENSG00000116668	tier1	-	-	45	0	0.00	45	19	29.69
TADA2B	0	genome.wustl.edu	37	4	7056084	7056084	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	4	7056084	7056084	C	G	SNP	TADA2B	ENST00000310074	human	ensembl	74_37	+1	known	missense	c.566	p.S189C	1.000	pirsf_Transcriptional_adaptor_2	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_Znf_ZZ,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	TADA2B	HGNC	ENSG00000173011	tier1	-	-	17	0	0.00	3	8	72.73
TAOK3	0	genome.wustl.edu	37	12	118693355	118693355	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	12	118693355	118693355	C	T	SNP	TAOK3	ENST00000392533	human	ensembl	74_37	-1	known	silent	c.18	p.L6	0.393	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK3	HGNC	ENSG00000135090	tier1	-	-	40	0	0.00	22	27	55.10
TARBP1	0	genome.wustl.edu	37	1	234534112	234534112	+	RNA	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	234534112	234534112	G	T	SNP	TARBP1	ENST00000484454	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TARBP1	HGNC	ENSG00000059588	tier1	-	-	29	0	0.00	17	7	29.17
TENM2	0	genome.wustl.edu	37	5	167517587	167517587	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	5	167517587	167517587	C	T	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	silent	c.1524	p.F508	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934	tier1	-	-	112	0	0.00	46	56	54.90
TMEM132D	0	genome.wustl.edu	37	12	130184990	130184990	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	12	130184990	130184990	C	A	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.333	p.M111I	0.976	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	tier1	-	-	45	0	0.00	29	20	40.82
TMEM132D	0	genome.wustl.edu	37	12	130184991	130184991	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	12	130184991	130184991	A	C	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.332	p.M111R	0.977	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	tier1	-	-	45	0	0.00	29	21	42.00
TOX3	0	genome.wustl.edu	37	16	52473227	52473227	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	16	52473227	52473227	G	C	SNP	TOX3	ENST00000219746	human	ensembl	74_37	-1	known	missense	c.1641	p.I547M	0.341	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX3	HGNC	ENSG00000103460	tier1	-	-	63	0	0.00	36	34	48.57
TP53	0	genome.wustl.edu	37	17	7579315	7579315	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	17	7579315	7579315	G	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.372	p.C124*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	262	0	0.00	67	237	77.96
TREM1	0	genome.wustl.edu	37	6	41250446	41250446	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	6	41250446	41250446	C	T	SNP	TREM1	ENST00000244709	human	ensembl	74_37	-1	known	silent	c.93	p.L31	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub	-	no_errors	TREM1	HGNC	ENSG00000124731	tier1	-	-	45	0	0.00	27	19	41.30
TUBA3C	0	genome.wustl.edu	37	13	19748259	19748259	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	13	19748259	19748259	C	A	SNP	TUBA3C	ENST00000400113	human	ensembl	74_37	-1	known	missense	c.1097	p.G366V	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033	tier1	-	-	76	0	0.00	25	46	64.79
TUBB2A	0	genome.wustl.edu	37	6	3154963	3154963	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	6	3154963	3154963	C	G	SNP	TUBB2A	ENST00000333628	human	ensembl	74_37	-1	known	missense	c.472	p.E158Q	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2A	HGNC	ENSG00000137267	tier1	-	-	53	0	0.00	30	24	44.44
UBAP2	0	genome.wustl.edu	37	9	33923379	33923379	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	9	33923379	33923379	G	C	SNP	UBAP2	ENST00000360802	human	ensembl	74_37	-1	known	missense	c.2894	p.T965R	1.000	NULL	pfam_DUF3697_Uba2,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073	tier1	-	-	38	0	0.00	50	24	32.43
UBE2M	0	genome.wustl.edu	37	19	59068438	59068438	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	19	59068438	59068438	G	A	SNP	UBE2M	ENST00000253023	human	ensembl	74_37	-1	known	missense	c.196	p.P66S	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2M	HGNC	ENSG00000130725	tier1	-	-	56	0	0.00	13	24	64.86
WBP11P1	0	genome.wustl.edu	37	18	30092380	30092380	+	RNA	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	18	30092380	30092380	C	G	SNP	WBP11P1	ENST00000567636	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WBP11P1	HGNC	ENSG00000260389	tier1	-	-	33	0	0.00	14	10	41.67
XKR7	0	genome.wustl.edu	37	20	30584580	30584580	+	Missense_Mutation	SNP	A	A	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	20	30584580	30584580	A	C	SNP	XKR7	ENST00000562532	human	ensembl	74_37	+1	known	missense	c.1060	p.K354Q	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR7	HGNC	ENSG00000260903	tier1	-	-	41	0	0.00	30	19	38.78
ZBED4	0	genome.wustl.edu	37	22	50279480	50279480	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	22	50279480	50279480	G	A	SNP	ZBED4	ENST00000216268	human	ensembl	74_37	+1	known	missense	c.2170	p.E724K	1.000	superfamily_RNaseH-like_dom	pfam_Znf_BED_prd,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426	tier1	-	-	31	0	0.00	21	17	44.74
ZC3H7B	0	genome.wustl.edu	37	22	41723332	41723332	+	Silent	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	22	41723332	41723332	C	T	SNP	ZC3H7B	ENST00000351589	human	ensembl	74_37	+1	known	silent	c.408	p.Y136	0.993	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Znf_CCCH,pfam_TPR_1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403	tier1	-	-	63	0	0.00	58	4	6.45
ZKSCAN3	0	genome.wustl.edu	37	6	28331513	28331513	+	Silent	SNP	A	A	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	6	28331513	28331513	A	G	SNP	ZKSCAN3	ENST00000252211	human	ensembl	74_37	+1	known	silent	c.678	p.E226	0.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN3	HGNC	ENSG00000189298	tier1	-	-	72	0	0.00	44	23	34.33
ZMYM1	0	genome.wustl.edu	37	1	35576032	35576032	+	Silent	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	35576032	35576032	G	A	SNP	ZMYM1	ENST00000359858	human	ensembl	74_37	+1	novel	silent	c.945	p.K315	0.998	smart_TRASH_dom	pfam_Znf_MYM,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_TRASH_dom	-	no_errors	ZMYM1	HGNC	ENSG00000197056	tier1	-	-	88	0	0.00	66	45	40.54
ZNF214	0	genome.wustl.edu	37	11	7021950	7021950	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	11	7021950	7021950	G	T	SNP	ZNF214	ENST00000278314	human	ensembl	74_37	-1	known	missense	c.964	p.Q322K	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF214	HGNC	ENSG00000149050	tier1	-	-	66	0	0.00	51	4	7.27
ZNF264	0	genome.wustl.edu	37	19	57723030	57723030	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	19	57723030	57723030	G	C	SNP	ZNF264	ENST00000263095	human	ensembl	74_37	+1	known	missense	c.565	p.E189Q	0.004	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF264	HGNC	ENSG00000083844	tier1	-	-	31	0	0.00	29	12	29.27
ZNF292	0	genome.wustl.edu	37	6	87967531	87967531	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	6	87967531	87967531	C	G	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	missense	c.4184	p.S1395C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	tier1	-	-	46	0	0.00	39	16	29.09
ZNF320	0	genome.wustl.edu	37	19	53385226	53385226	+	Silent	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	19	53385226	53385226	G	A	SNP	ZNF320	ENST00000391781	human	ensembl	74_37	-1	known	silent	c.153	p.S51	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF320	HGNC	ENSG00000182986	tier1	-	-	107	0	0.00	144	57	28.36
ZNF451	0	genome.wustl.edu	37	6	57018677	57018677	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	6	57018677	57018677	C	T	SNP	ZNF451	ENST00000370706	human	ensembl	74_37	+1	known	nonsense	c.2902	p.Q968*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF451	HGNC	ENSG00000112200	tier1	-	-	35	0	0.00	19	16	45.71
ZNF671	0	genome.wustl.edu	37	19	58232613	58232613	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	19	58232613	58232613	C	A	SNP	ZNF671	ENST00000317398	human	ensembl	74_37	-1	known	nonsense	c.841	p.G281*	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF671	HGNC	ENSG00000083814	tier1	-	-	52	0	0.00	262	25	8.71
ZNF672	0	genome.wustl.edu	37	1	249142293	249142293	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	1	249142293	249142293	C	T	SNP	ZNF672	ENST00000306562	human	ensembl	74_37	+1	known	missense	c.820	p.R274W	0.337	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF672	HGNC	ENSG00000171161	tier1	-	-	17	0	0.00	19	7	26.92
ZNF81	0	genome.wustl.edu	37	X	47775250	47775250	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	X	47775250	47775250	A	G	SNP	ZNF81	ENST00000338637	human	ensembl	74_37	+1	known	missense	c.1205	p.N402S	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF81	HGNC	ENSG00000197779	tier1	-	-	20	0	0.00	3	21	87.50
ZNF99	0	genome.wustl.edu	37	19	22940566	22940566	+	Silent	SNP	G	G	A			TCGA-LN-A49U-01A-31D-A27G-09	TCGA-LN-A49U-10A-01D-A27G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93ad526c-d7d9-4e57-813e-81fe8e061d0b	c374778c-bec4-4e10-80b1-441d101dae87	19	22940566	22940566	G	A	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	silent	c.1872	p.S624	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973	tier1	-	-	49	0	0.00	33	21	38.89
