Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCF2	0	genome.wustl.edu	37	7	150918758	150918758	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	7	150918758	150918758	C	T	SNP	ABCF2	ENST00000222388	human	ensembl	74_37	-1	known	missense	c.827	p.R276H	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF2	HGNC	ENSG00000033050	tier1	-	-	33	0	0.00	36	7	16.28
AGAP11	0	genome.wustl.edu	37	10	88760457	88760457	+	RNA	DEL	T	T	-			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	10	88760457	88760457	T	-	DEL	AGAP11	ENST00000444431	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	AGAP11	HGNC	ENSG00000151303	tier1			36	0	0.00	18	5	21.74
AGTPBP1	0	genome.wustl.edu	37	9	88292466	88292466	+	Silent	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	9	88292466	88292466	G	T	SNP	AGTPBP1	ENST00000376109	human	ensembl	74_37	-1	known	silent	c.477	p.T159	0.998	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049	tier1	-	-	14	0	0.00	20	5	20.00
AKAP12	0	genome.wustl.edu	37	6	151673538	151673538	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	6	151673538	151673538	G	A	SNP	AKAP12	ENST00000253332	human	ensembl	74_37	+1	known	missense	c.4012	p.V1338I	0.000	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016	tier1	-	-	39	0	0.00	30	10	25.00
ALB	0	genome.wustl.edu	37	4	74283887	74283887	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	4	74283887	74283887	C	T	SNP	ALB	ENST00000295897	human	ensembl	74_37	+1	known	missense	c.1511	p.S504F	0.998	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_ALB/AFP/VDB	-	no_errors	ALB	HGNC	ENSG00000163631	tier1	-	-	34	0	0.00	29	6	17.14
ALOX5	0	genome.wustl.edu	37	10	45907711	45907711	+	Silent	SNP	C	C	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	10	45907711	45907711	C	A	SNP	ALOX5	ENST00000374391	human	ensembl	74_37	+1	known	silent	c.504	p.I168	1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C,pfscan_PLAT/LH2_dom	-	no_errors	ALOX5	HGNC	ENSG00000012779	tier1	-	-	62	0	0.00	39	23	37.10
ANK2	0	genome.wustl.edu	37	4	114276595	114276595	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	4	114276595	114276595	G	A	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	missense	c.6821	p.R2274H	0.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362	tier1	-	-	9	0	0.00	1	13	92.86
ANKRD16	0	genome.wustl.edu	37	10	5920183	5920183	+	Silent	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	10	5920183	5920183	C	T	SNP	ANKRD16	ENST00000380092	human	ensembl	74_37	-1	known	silent	c.996	p.K332	0.694	smart_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD16	HGNC	ENSG00000134461	tier1	-	-	27	0	0.00	12	5	29.41
ANKRD20A5P	0	genome.wustl.edu	37	18	14225639	14225639	+	RNA	DEL	A	A	-			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	18	14225639	14225639	A	-	DEL	ANKRD20A5P	ENST00000577614	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.184	-	-	-	no_errors	ANKRD20A5P	HGNC	ENSG00000186481	tier1			68	0	0.00	57	19	25.00
ARMC4	0	genome.wustl.edu	37	10	28229562	28229562	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	10	28229562	28229562	C	T	SNP	ARMC4	ENST00000305242	human	ensembl	74_37	-1	known	missense	c.1916	p.R639Q	0.001	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP_dom,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126	tier1	rs148908705	-	28	0	0.00	20	9	31.03
ASIC2	0	genome.wustl.edu	37	17	31618690	31618690	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	17	31618690	31618690	C	G	SNP	ASIC2	ENST00000225823	human	ensembl	74_37	-1	known	missense	c.444	p.K148N	1.000	pfam_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	ASIC2	HGNC	ENSG00000108684	tier1	-	-	73	0	0.00	20	21	51.22
ATP6V1C2	0	genome.wustl.edu	37	2	10863041	10863041	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	2	10863041	10863041	G	A	SNP	ATP6V1C2	ENST00000272238	human	ensembl	74_37	+1	known	missense	c.66	p.M22I	1.000	pfam_ATPase_V1-cplx_csu	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C2	HGNC	ENSG00000143882	tier1	-	-	83	0	0.00	45	10	18.18
ATPAF2	0	genome.wustl.edu	37	17	17925098	17925098	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	17	17925098	17925098	C	T	SNP	ATPAF2	ENST00000474627	human	ensembl	74_37	-1	known	missense	c.577	p.V193I	0.000	NULL	pfam_ATP12_ATPase-F1F0-assembly	-	no_errors	ATPAF2	HGNC	ENSG00000171953	tier1	-	-	24	0	0.00	13	13	50.00
ATRNL1	0	genome.wustl.edu	37	10	117221465	117221465	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	10	117221465	117221465	G	T	SNP	ATRNL1	ENST00000355044	human	ensembl	74_37	+1	known	missense	c.3337	p.D1113Y	1.000	NULL	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518	tier1	-	-	32	0	0.00	45	28	38.36
BCL9	0	genome.wustl.edu	37	1	147096223	147096223	+	Silent	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	147096223	147096223	G	A	SNP	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	silent	c.3744	p.T1248	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128	tier1	-	-	38	0	0.00	45	5	10.00
BIN2	0	genome.wustl.edu	37	12	51717865	51717865	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	12	51717865	51717865	C	T	SNP	BIN2	ENST00000267012	human	ensembl	74_37	-1	known	missense	c.22	p.G8S	0.989	NULL	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin	-	no_errors	BIN2	HGNC	ENSG00000110934	tier1	-	-	53	0	0.00	41	9	18.00
C10orf82	0	genome.wustl.edu	37	10	118425180	118425180	+	Silent	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	10	118425180	118425180	G	A	SNP	C10orf82	ENST00000588184	human	ensembl	74_37	-1	known	silent	c.213	p.S71	0.012	NULL	NULL	-	no_errors	C10orf82	HGNC	ENSG00000165863	tier1	-	-	40	0	0.00	39	7	15.22
C17orf85	0	genome.wustl.edu	37	17	3719429	3719429	+	Silent	SNP	T	T	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	17	3719429	3719429	T	G	SNP	C17orf85	ENST00000389005	human	ensembl	74_37	-1	known	silent	c.1446	p.P482	0.288	NULL	pfam_DUF2414	-	no_errors	C17orf85	HGNC	ENSG00000074356	tier1	-	-	61	0	0.00	44	4	8.33
C3	0	genome.wustl.edu	37	19	6697509	6697509	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	19	6697509	6697509	C	T	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.2642	p.R881H	0.064	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730	tier1	-	-	60	0	0.00	67	23	25.56
C4orf50	0	genome.wustl.edu	37	4	5981916	5981916	+	Silent	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	4	5981916	5981916	C	T	SNP	C4orf50	ENST00000531445	human	ensembl	74_37	-1	known	silent	c.1575	p.E525	0.001	NULL	NULL	-	no_errors	C4orf50	HGNC	ENSG00000181215	tier1	-	-	46	0	0.00	48	10	17.24
CA8	0	genome.wustl.edu	37	8	61121437	61121437	+	Silent	SNP	T	T	C			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	8	61121437	61121437	T	C	SNP	CA8	ENST00000317995	human	ensembl	74_37	-1	known	silent	c.780	p.A260	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA8	HGNC	ENSG00000178538	tier1	-	-	76	0	0.00	81	7	7.95
CACNB1	0	genome.wustl.edu	37	17	37343091	37343091	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	17	37343091	37343091	C	T	SNP	CACNB1	ENST00000394303	human	ensembl	74_37	-1	known	missense	c.506	p.R169H	1.000	superfamily_SH3_domain	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b1su	-	no_errors	CACNB1	HGNC	ENSG00000067191	tier1	-	-	54	0	0.00	31	5	13.89
CC2D1B	0	genome.wustl.edu	37	1	52821306	52821306	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	52821306	52821306	G	A	SNP	CC2D1B	ENST00000371586	human	ensembl	74_37	-1	known	missense	c.2179	p.R727W	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_DM14,smart_C2_dom	-	no_errors	CC2D1B	HGNC	ENSG00000154222	tier1	-	-	28	0	0.00	23	4	14.29
CCDC71	0	genome.wustl.edu	37	3	49201104	49201104	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	3	49201104	49201104	C	T	SNP	CCDC71	ENST00000321895	human	ensembl	74_37	-1	known	missense	c.538	p.E180K	1.000	NULL	NULL	-	no_errors	CCDC71	HGNC	ENSG00000177352	tier1	-	-	41	0	0.00	17	6	26.09
CDC40	0	genome.wustl.edu	37	6	110541037	110541037	+	Silent	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	6	110541037	110541037	C	T	SNP	CDC40	ENST00000307731	human	ensembl	74_37	+1	known	silent	c.1305	p.S435	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC40	HGNC	ENSG00000168438	tier1	-	-	31	0	0.00	30	4	11.76
CELSR2	0	genome.wustl.edu	37	1	109816112	109816112	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	109816112	109816112	G	A	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.8564	p.R2855Q	1.000	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	tier1	-	-	21	0	0.00	12	8	40.00
CEP170B	0	genome.wustl.edu	37	14	105359964	105359964	+	Silent	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	14	105359964	105359964	C	T	SNP	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	silent	c.4251	p.D1417	0.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814	tier1	-	-	55	0	0.00	46	7	13.21
CLIP2	0	genome.wustl.edu	37	7	73790244	73790244	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	7	73790244	73790244	G	A	SNP	CLIP2	ENST00000223398	human	ensembl	74_37	+1	known	missense	c.1513	p.V505M	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665	tier1	-	-	35	0	0.00	20	11	35.48
CNGB1	0	genome.wustl.edu	37	16	57965772	57965772	+	Silent	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	16	57965772	57965772	C	T	SNP	CNGB1	ENST00000251102	human	ensembl	74_37	-1	known	silent	c.1383	p.T461	0.000	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729	tier1	-	-	65	0	0.00	30	4	11.76
COL9A3	0	genome.wustl.edu	37	20	61472147	61472147	+	RNA	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	20	61472147	61472147	C	T	SNP	COL9A3	ENST00000462700	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	COL9A3	HGNC	ENSG00000092758	tier1	-	-	25	0	0.00	24	13	35.14
CSNK1A1	0	genome.wustl.edu	37	5	148876034	148876034	+	RNA	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	5	148876034	148876034	G	A	SNP	CSNK1A1	ENST00000412431	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.985	-	-	-	no_errors	CTB-89H12.4	Clone_based_vega_gene	ENSG00000230551	tier1	-	-	17	0	0.00	10	5	33.33
DDX3X	0	genome.wustl.edu	37	X	41198321	41198321	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	X	41198321	41198321	C	T	SNP	DDX3X	ENST00000399959	human	ensembl	74_37	+1	known	nonsense	c.136	p.R46*	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301	tier1	-	-	23	0	0.00	14	11	44.00
DDX3Y	0	genome.wustl.edu	37	Y	15029443	15029443	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	Y	15029443	15029443	G	T	SNP	DDX3Y	ENST00000336079	human	ensembl	74_37	+1	known	missense	c.1892	p.G631V	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3Y	HGNC	ENSG00000067048	tier1	-	-	48	0	0.00	30	4	11.76
DIAPH1	0	genome.wustl.edu	37	5	140957145	140957145	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	5	140957145	140957145	C	T	SNP	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	missense	c.1177	p.V393I	1.000	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504	tier1	-	-	36	0	0.00	1	35	97.22
DLGAP4	0	genome.wustl.edu	37	20	35060728	35060728	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	20	35060728	35060728	G	T	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	missense	c.608	p.G203V	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845	tier1	-	-	51	0	0.00	76	5	6.17
DMXL1	0	genome.wustl.edu	37	5	118556217	118556217	+	Silent	SNP	G	G	C			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	5	118556217	118556217	G	C	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	silent	c.8064	p.L2688	0.998	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	tier1	-	-	24	0	0.00	22	5	18.52
DNAJB8-AS1	0	genome.wustl.edu	37	3	128182859	128182859	+	RNA	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	3	128182859	128182859	C	T	SNP	DNAJB8-AS1	ENST00000471626	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.265	-	-	-	no_errors	DNAJB8-AS1	HGNC	ENSG00000242049	tier1	-	-	29	0	0.00	16	14	46.67
DNTTIP1	0	genome.wustl.edu	37	20	44424079	44424079	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	20	44424079	44424079	G	T	SNP	DNTTIP1	ENST00000372622	human	ensembl	74_37	+1	known	missense	c.369	p.E123D	0.995	NULL	NULL	-	no_errors	DNTTIP1	HGNC	ENSG00000101457	tier1	-	-	28	0	0.00	20	6	23.08
DYSF	0	genome.wustl.edu	37	2	71827929	71827929	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	2	71827929	71827929	C	A	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	nonsense	c.3893	p.S1298*	0.813	superfamily_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636	tier1	-	-	64	0	0.00	41	10	19.61
EHBP1	0	genome.wustl.edu	37	2	63091905	63091905	+	Missense_Mutation	SNP	A	A	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	2	63091905	63091905	A	T	SNP	EHBP1	ENST00000263991	human	ensembl	74_37	+1	known	missense	c.902	p.D301V	0.997	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504	tier1	-	-	21	0	0.00	2	18	90.00
EHMT1	0	genome.wustl.edu	37	9	140611421	140611421	+	Silent	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	9	140611421	140611421	G	T	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	silent	c.429	p.L143	0.920	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	tier1	-	-	36	0	0.00	63	4	5.97
EHMT2-AS1	0	genome.wustl.edu	37	6	31851546	31851546	+	RNA	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	6	31851546	31851546	G	A	SNP	EHMT2-AS1	ENST00000434689	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EHMT2-AS1	HGNC	ENSG00000237080	tier1	-	-	46	0	0.00	42	10	19.23
EIF3E	0	genome.wustl.edu	37	8	109252218	109252218	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	8	109252218	109252218	G	A	SNP	EIF3E	ENST00000220849	human	ensembl	74_37	-1	known	missense	c.292	p.P98S	1.000	pfam_eIF3e_N,pirsf_eIF3e	pfam_eIF3e_N,pfam_PCI_dom,smart_PCI_dom,pirsf_eIF3e	-	no_errors	EIF3E	HGNC	ENSG00000104408	tier1	-	-	74	0	0.00	150	37	19.79
ELAC2	0	genome.wustl.edu	37	17	12899085	12899085	+	Frame_Shift_Del	DEL	G	G	-			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	17	12899085	12899085	G	-	DEL	ELAC2	ENST00000338034	human	ensembl	74_37	-1	known	frame_shift_del	c.1743	p.N582fs	0.002	pfam_Beta-lactamas-like	pfam_Beta-lactamas-like	-	no_errors	ELAC2	HGNC	ENSG00000006744	tier1			25	0	0.00	25	4	13.79
ENSG00000225411	0	genome.wustl.edu	37	9	68400476	68400476	+	RNA	SNP	G	G	C			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	9	68400476	68400476	G	C	SNP	ENSG00000225411	ENST00000417843	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	RP11-764K9.1	Clone_based_vega_gene	ENSG00000225411	tier1	-	-	19	0	0.00	11	3	21.43
ENSG00000225891	0	genome.wustl.edu	37	1	26793747	26793747	+	RNA	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	26793747	26793747	C	T	SNP	ENSG00000225891	ENST00000423060	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP3-476K8.3	Clone_based_vega_gene	ENSG00000225891	tier1	-	-	42	0	0.00	32	12	27.27
ENSG00000232675	0	genome.wustl.edu	37	20	19673859	19673860	+	RNA	INS	-	-	TTA			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	20	19673859	19673860	-	TTA	INS	ENSG00000232675	ENST00000435992	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP4-718D20.3	Clone_based_vega_gene	ENSG00000232675	tier1			14	0	0.00	9	6	40.00
ENSG00000250404	0	genome.wustl.edu	37	11	3838572	3838572	+	RNA	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	11	3838572	3838572	G	A	SNP	ENSG00000250404	ENST00000507938	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	AC090587.2	Clone_based_vega_gene	ENSG00000250404	tier1	-	-	56	0	0.00	39	26	40.00
EP300	0	genome.wustl.edu	37	22	41568668	41568668	+	Splice_Site	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	22	41568668	41568668	G	A	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	splice_site	c.4617+1	e28+1	1.000	-	-	-	no_errors	EP300	HGNC	ENSG00000100393	tier1	-	-	28	0	0.00	3	27	90.00
FAM157C	0	genome.wustl.edu	37	16	90168697	90168697	+	RNA	DEL	A	A	-			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	16	90168697	90168697	A	-	DEL	FAM157C	ENST00000563357	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	FAM157C	HGNC	ENSG00000260528	tier1			71	0	0.00	36	6	14.29
FAM71A	0	genome.wustl.edu	37	1	212798804	212798804	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	212798804	212798804	G	A	SNP	FAM71A	ENST00000294829	human	ensembl	74_37	+1	known	missense	c.585	p.M195I	0.917	NULL	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771	tier1	-	-	20	0	0.00	25	23	47.92
FHOD1	0	genome.wustl.edu	37	16	67264528	67264528	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	16	67264528	67264528	A	G	SNP	FHOD1	ENST00000258201	human	ensembl	74_37	-1	known	missense	c.2834	p.I945T	0.961	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD1	HGNC	ENSG00000135723	tier1	-	-	62	0	0.00	4	13	76.47
GABRE	0	genome.wustl.edu	37	X	151138169	151138169	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	X	151138169	151138169	C	A	SNP	GABRE	ENST00000370328	human	ensembl	74_37	-1	known	missense	c.314	p.S105I	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAe_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRE	HGNC	ENSG00000102287	tier1	-	-	34	0	0.00	4	22	84.62
GALNT18	0	genome.wustl.edu	37	11	11314686	11314686	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	11	11314686	11314686	C	T	SNP	GALNT18	ENST00000227756	human	ensembl	74_37	-1	known	missense	c.1567	p.V523M	0.002	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT18	HGNC	ENSG00000110328	tier1	-	-	39	0	0.00	31	19	38.00
GAS7	0	genome.wustl.edu	37	17	9862555	9862555	+	Silent	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	17	9862555	9862555	C	T	SNP	GAS7	ENST00000432992	human	ensembl	74_37	-1	known	silent	c.489	p.S163	0.961	NULL	pfam_FCH_dom,pfam_WW_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_WW_dom,smart_SH3_domain,smart_WW_dom,smart_FCH_dom,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_WW_dom	-	no_errors	GAS7	HGNC	ENSG00000007237	tier1	rs142589082	-	54	0	0.00	45	11	19.64
GINS3	0	genome.wustl.edu	37	16	58329008	58329008	+	RNA	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	16	58329008	58329008	G	T	SNP	GINS3	ENST00000567400	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.200	-	-	-	no_errors	GINS3	HGNC	ENSG00000181938	tier1	-	-	65	0	0.00	26	4	13.33
GLUD2	0	genome.wustl.edu	37	X	120182379	120182379	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	X	120182379	120182379	G	T	SNP	GLUD2	ENST00000328078	human	ensembl	74_37	+1	known	nonsense	c.841	p.E281*	1.000	pfam_Glu/Leu/Phe/Val_DH_C,smart_Glu/Leu/Phe/Val_DH_C	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD2	HGNC	ENSG00000182890	tier1	-	-	42	0	0.00	32	5	13.51
GMPPA	0	genome.wustl.edu	37	2	220364857	220364857	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	2	220364857	220364857	C	G	SNP	GMPPA	ENST00000313597	human	ensembl	74_37	+1	known	missense	c.55	p.P19A	1.000	pfam_NTP_transferase	pfam_NTP_transferase	-	no_errors	GMPPA	HGNC	ENSG00000144591	tier1	-	-	80	0	0.00	23	8	25.81
GOLGA8EP	0	genome.wustl.edu	37	15	23445535	23445535	+	RNA	SNP	A	A	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	15	23445535	23445535	A	G	SNP	GOLGA8EP	ENST00000526079	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.047	-	-	-	no_errors	GOLGA8EP	HGNC	ENSG00000175676	tier1	-	-	80	0	0.00	10	40	80.00
GPR37L1	0	genome.wustl.edu	37	1	202092359	202092359	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	202092359	202092359	G	A	SNP	GPR37L1	ENST00000367282	human	ensembl	74_37	+1	known	missense	c.268	p.G90S	0.003	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph,prints_GPCR_Rhodpsn	-	no_errors	GPR37L1	HGNC	ENSG00000170075	tier1	-	-	36	0	0.00	30	14	31.82
HIC2	0	genome.wustl.edu	37	22	21799838	21799839	+	Frame_Shift_Ins	INS	-	-	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	22	21799838	21799839	-	T	INS	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	frame_shift_ins	c.654_655	p.C218fs	0.336:0.369	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635	tier1			8	0	0.00	4	2	33.33
IL23R	0	genome.wustl.edu	37	1	67724850	67724850	+	RNA	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	67724850	67724850	C	T	SNP	IL23R	ENST00000473881	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IL23R	HGNC	ENSG00000162594	tier1	-	-	17	0	0.00	2	21	91.30
IMPG1	0	genome.wustl.edu	37	6	76728472	76728472	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	6	76728472	76728472	G	T	SNP	IMPG1	ENST00000369950	human	ensembl	74_37	-1	known	missense	c.770	p.P257Q	0.212	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG1	HGNC	ENSG00000112706	tier1	-	-	37	0	0.00	15	18	54.55
ISL2	0	genome.wustl.edu	37	15	76632669	76632669	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	15	76632669	76632669	G	A	SNP	ISL2	ENST00000558656	human	ensembl	74_37	+1	known	missense	c.301	p.G101R	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ISL2	HGNC	ENSG00000159556	tier1	-	-	27	0	0.00	17	8	32.00
ITGAL	0	genome.wustl.edu	37	16	30522255	30522255	+	Silent	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	16	30522255	30522255	G	A	SNP	ITGAL	ENST00000356798	human	ensembl	74_37	+1	known	silent	c.2673	p.S891	0.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAL	HGNC	ENSG00000005844	tier1	-	-	41	0	0.00	15	3	16.67
ITGB2	0	genome.wustl.edu	37	21	46320286	46320286	+	Silent	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	21	46320286	46320286	G	A	SNP	ITGB2	ENST00000302347	human	ensembl	74_37	-1	known	silent	c.846	p.N282	0.153	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255	tier1	-	-	75	0	0.00	84	9	9.68
JAKMIP3	0	genome.wustl.edu	37	10	133946999	133946999	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	10	133946999	133946999	G	A	SNP	JAKMIP3	ENST00000298622	human	ensembl	74_37	+1	known	missense	c.817	p.A273T	1.000	NULL	NULL	-	no_errors	JAKMIP3	HGNC	ENSG00000188385	tier1	-	-	25	0	0.00	16	8	33.33
KALRN	0	genome.wustl.edu	37	3	124281861	124281861	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	3	124281861	124281861	G	C	SNP	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	missense	c.5101	p.V1701L	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	tier1	-	-	38	0	0.00	33	19	36.54
KCNT1	0	genome.wustl.edu	37	9	138662861	138662861	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	9	138662861	138662861	G	A	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	missense	c.1928	p.R643Q	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147	tier1	rs141281093	-	50	0	0.00	60	5	7.69
KIAA1279	0	genome.wustl.edu	37	10	70775906	70775906	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	10	70775906	70775906	C	T	SNP	KIAA1279	ENST00000361983	human	ensembl	74_37	+1	known	missense	c.1600	p.H534Y	1.000	pfam_KBP	pfam_KBP	-	no_errors	KIAA1279	HGNC	ENSG00000198954	tier1	-	-	42	0	0.00	38	11	22.45
KIR3DL2	0	genome.wustl.edu	37	19	55378146	55378146	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	19	55378146	55378146	G	T	SNP	KIR3DL2	ENST00000326321	human	ensembl	74_37	+1	known	missense	c.1328	p.C443F	0.000	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL2	HGNC	ENSG00000240403	tier1	-	-	49	0	0.00	35	5	12.50
KLHL33	0	genome.wustl.edu	37	14	20898614	20898614	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	14	20898614	20898614	C	T	SNP	KLHL33	ENST00000344581	human	ensembl	74_37	-1	known	missense	c.221	p.R74H	0.651	NULL	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BACK,smart_Kelch_1	-	no_errors	KLHL33	HGNC	ENSG00000185271	tier1	-	-	26	0	0.00	30	8	21.05
KPNB1	0	genome.wustl.edu	37	17	45750492	45750492	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	17	45750492	45750492	G	T	SNP	KPNB1	ENST00000290158	human	ensembl	74_37	+1	known	missense	c.1656	p.L552F	0.952	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,pfam_Armadillo,superfamily_ARM-type_fold,smart_Importin-beta_N,smart_Armadillo,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	KPNB1	HGNC	ENSG00000108424	tier1	-	-	66	0	0.00	26	7	21.21
LMOD1	0	genome.wustl.edu	37	1	201915358	201915358	+	Silent	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	201915358	201915358	G	A	SNP	LMOD1	ENST00000367288	human	ensembl	74_37	-1	known	silent	c.111	p.D37	0.963	pfam_Tropomodulin	pfam_Tropomodulin,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	LMOD1	HGNC	ENSG00000163431	tier1	-	-	58	0	0.00	76	22	22.45
LOC101930643	0	genome.wustl.edu	37	1	93730253	93730253	+	RNA	SNP	T	T	C			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	93730253	93730253	T	C	SNP	LOC101930643	ENST00000414430	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.112	-	-	-	no_errors	RP4-717I23.3	Clone_based_vega_gene	ENSG00000223745	tier1	-	-	12	0	0.00	7	4	36.36
LTBP2	0	genome.wustl.edu	37	14	74974791	74974791	+	Silent	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	14	74974791	74974791	G	A	SNP	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	silent	c.3660	p.D1220	0.995	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681	tier1	-	-	31	0	0.00	27	5	15.62
MAGEB6	0	genome.wustl.edu	37	X	26213137	26213137	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	X	26213137	26213137	G	T	SNP	MAGEB6	ENST00000379034	human	ensembl	74_37	+1	known	nonsense	c.1174	p.E392*	0.037	pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB6	HGNC	ENSG00000176746	tier1	-	-	55	0	0.00	26	4	13.33
MAGI1	0	genome.wustl.edu	37	3	65425588	65425589	+	In_Frame_Ins	INS	-	-	TGT			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	3	65425588	65425589	-	TGT	INS	MAGI1	ENST00000402939	human	ensembl	74_37	-1	known	in_frame_ins	c.1236_1235	p.416in_frame_insQ	0.423:0.413	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276	tier1			61	0	0.00	53	9	14.52
MALAT1	0	genome.wustl.edu	37	11	65268480	65268480	+	RNA	DEL	T	T	-			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	11	65268480	65268480	T	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562	tier1			36	0	0.00	32	2	5.88
MAN2B2	0	genome.wustl.edu	37	4	6578408	6578408	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	4	6578408	6578408	G	A	SNP	MAN2B2	ENST00000285599	human	ensembl	74_37	+1	known	missense	c.242	p.R81Q	1.000	pfam_Glyco_hydro_38_N,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288	tier1	-	-	39	0	0.00	31	7	18.42
MAP3K6	0	genome.wustl.edu	37	1	27685091	27685091	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	27685091	27685091	G	T	SNP	MAP3K6	ENST00000357582	human	ensembl	74_37	-1	known	nonsense	c.2595	p.Y865*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K6	HGNC	ENSG00000142733	tier1	-	-	44	0	0.00	57	4	6.56
MAPK8IP3	0	genome.wustl.edu	37	16	1814194	1814194	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	16	1814194	1814194	A	-	DEL	MAPK8IP3	ENST00000250894	human	ensembl	74_37	+1	known	frame_shift_del	c.2101	p.K701fs	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	tier1			27	0	0.00	7	2	22.22
MAST2	0	genome.wustl.edu	37	1	46497918	46497918	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	46497918	46497918	C	T	SNP	MAST2	ENST00000361297	human	ensembl	74_37	+1	known	missense	c.3256	p.R1086W	1.000	superfamily_PDZ	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST2	HGNC	ENSG00000086015	tier1	-	-	58	0	0.00	31	40	56.34
MBLAC1	0	genome.wustl.edu	37	7	99725388	99725388	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	7	99725388	99725388	G	T	SNP	MBLAC1	ENST00000398075	human	ensembl	74_37	+1	known	missense	c.370	p.G124W	1.000	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	MBLAC1	HGNC	ENSG00000214309	tier1	-	-	33	0	0.00	39	12	23.53
MDC1	0	genome.wustl.edu	37	6	30671587	30671587	+	Silent	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	6	30671587	30671587	C	T	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	silent	c.5373	p.V1791	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	tier1	-	-	23	0	0.00	15	8	34.78
MESP2	0	genome.wustl.edu	37	15	90321579	90321579	+	RNA	SNP	C	C	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	15	90321579	90321579	C	G	SNP	MESP2	ENST00000558723	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MESP2	HGNC	ENSG00000188095	tier1	-	-	21	0	0.00	2	12	85.71
MGRN1	0	genome.wustl.edu	37	16	4714709	4714709	+	Splice_Site	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	16	4714709	4714709	G	A	SNP	MGRN1	ENST00000262370	human	ensembl	74_37	+1	known	splice_site	c.562-1	e6-1	1.000	-	-	-	no_errors	MGRN1	HGNC	ENSG00000102858	tier1	-	-	94	0	0.00	44	12	21.43
MIR624	0	genome.wustl.edu	37	14	31483858	31483858	+	RNA	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	14	31483858	31483858	G	T	SNP	MIR624	ENST00000385217	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MIR624	HGNC	ENSG00000207952	tier1	-	-	63	0	0.00	70	6	7.79
MMP17	0	genome.wustl.edu	37	12	132335615	132335615	+	Silent	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	12	132335615	132335615	G	A	SNP	MMP17	ENST00000360564	human	ensembl	74_37	+1	known	silent	c.1608	p.V536	0.000	NULL	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP17	HGNC	ENSG00000198598	tier1	-	-	77	0	0.00	64	14	17.95
MT-CO1	0	genome.wustl.edu	37	MT	7428	7428	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	MT	7428	7428	G	A	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.1525	p.V509M	NULL	superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804	tier1	-	-	105	0	0.00	5	71	93.42
MYCBPAP	0	genome.wustl.edu	37	17	48597137	48597137	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	17	48597137	48597137	G	A	SNP	MYCBPAP	ENST00000323776	human	ensembl	74_37	+1	known	missense	c.1034	p.R345Q	0.189	NULL	NULL	-	no_errors	MYCBPAP	HGNC	ENSG00000136449	tier1	-	-	32	0	0.00	21	4	16.00
NBPF1	0	genome.wustl.edu	37	1	16902825	16902825	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	16902825	16902825	G	A	SNP	NBPF1	ENST00000432949	human	ensembl	74_37	-1	known	missense	c.430	p.L144F	0.002	NULL	pfam_NBPF_dom	-	no_errors	NBPF1	HGNC	ENSG00000219481	tier1	-	-	380	0	0.00	270	74	21.51
NCOA3	0	genome.wustl.edu	37	20	46279834	46279836	+	In_Frame_Del	DEL	CAA	CAA	-			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	CAA	CAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	20	46279834	46279836	CAA	-	DEL	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	in_frame_del	c.3760_3762	p.Q1257in_frame_del	0.527:0.539:0.525	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151	tier1			32	0	0.00	46	5	9.80
NFKB2	0	genome.wustl.edu	37	10	104161038	104161038	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	10	104161038	104161038	C	T	SNP	NFKB2	ENST00000369966	human	ensembl	74_37	+1	known	nonsense	c.2173	p.R725*	0.003	NULL	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB2	HGNC	ENSG00000077150	tier1	-	-	36	0	0.00	24	6	20.00
NOTCH1	0	genome.wustl.edu	37	9	139399766	139399766	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	9	139399766	139399766	A	G	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	missense	c.4582	p.C1528R	1.000	superfamily_Notch_dom,smart_Notch_dom,pirsf_Notch,pfscan_Notch_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	tier1	-	-	18	0	0.00	6	17	73.91
NPAS2	0	genome.wustl.edu	37	2	101549417	101549417	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	2	101549417	101549417	A	G	SNP	NPAS2	ENST00000542504	human	ensembl	74_37	+1	known	missense	c.422	p.K141R	1.000	superfamily_bHLH_dom,prints_Nuc_translocat	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485	tier1	-	-	19	0	0.00	7	11	61.11
NPR1	0	genome.wustl.edu	37	1	153655047	153655047	+	Silent	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	153655047	153655047	C	T	SNP	NPR1	ENST00000368680	human	ensembl	74_37	+1	known	silent	c.1245	p.P415	0.919	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	NPR1	HGNC	ENSG00000169418	tier1	rs201584708	-	57	0	0.00	85	11	11.46
NTRK3	0	genome.wustl.edu	37	15	88420209	88420209	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	15	88420209	88420209	G	A	SNP	NTRK3	ENST00000360948	human	ensembl	74_37	-1	known	missense	c.2477	p.A826V	0.905	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538	tier1	-	-	66	0	0.00	49	8	14.04
ODF3L1	0	genome.wustl.edu	37	15	76019672	76019672	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	15	76019672	76019672	C	T	SNP	ODF3L1	ENST00000332145	human	ensembl	74_37	+1	known	nonsense	c.616	p.R206*	0.486	NULL	pfam_SHIPPO-rpt	-	no_errors	ODF3L1	HGNC	ENSG00000182950	tier1	-	-	35	0	0.00	15	25	62.50
OPN4	0	genome.wustl.edu	37	10	88422152	88422152	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	10	88422152	88422152	G	A	SNP	OPN4	ENST00000372071	human	ensembl	74_37	+1	known	missense	c.1250	p.R417Q	0.005	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN4	HGNC	ENSG00000122375	tier1	-	-	89	0	0.00	55	11	16.67
OR4A16	0	genome.wustl.edu	37	11	55110876	55110876	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	11	55110876	55110876	T	C	SNP	OR4A16	ENST00000314721	human	ensembl	74_37	+1	known	missense	c.200	p.M67T	0.966	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A16	HGNC	ENSG00000181961	tier1	-	-	40	0	0.00	46	7	13.21
OR51F2	0	genome.wustl.edu	37	11	4842865	4842865	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	11	4842865	4842865	G	T	SNP	OR51F2	ENST00000322110	human	ensembl	74_37	+1	known	missense	c.250	p.D84Y	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51F2	HGNC	ENSG00000176925	tier1	-	-	50	0	0.00	55	29	34.52
OR51G2	0	genome.wustl.edu	37	11	4936276	4936276	+	Silent	SNP	A	A	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	11	4936276	4936276	A	G	SNP	OR51G2	ENST00000322013	human	ensembl	74_37	-1	known	silent	c.618	p.F206	0.996	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G2	HGNC	ENSG00000176893	tier1	-	-	39	0	0.00	41	16	28.07
PAPD7	0	genome.wustl.edu	37	5	6755014	6755014	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	5	6755014	6755014	C	A	SNP	PAPD7	ENST00000230859	human	ensembl	74_37	+1	known	missense	c.1585	p.H529N	1.000	NULL	pfam_PAP_assoc,pfam_Nucleotidyltransferase	-	no_errors	PAPD7	HGNC	ENSG00000112941	tier1	-	-	30	0	0.00	4	7	63.64
PCDH8	0	genome.wustl.edu	37	13	53418936	53418936	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	13	53418936	53418936	G	A	SNP	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	missense	c.2972	p.T991M	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099	tier1	-	-	43	0	0.00	1	31	96.88
PCDHB7	0	genome.wustl.edu	37	5	140554656	140554656	+	Missense_Mutation	SNP	A	A	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	5	140554656	140554656	A	G	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.2240	p.Y747C	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	tier1	-	-	100	0	0.00	4	70	94.59
PDZD2	0	genome.wustl.edu	37	5	32108657	32108657	+	RNA	SNP	T	T	C			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	5	32108657	32108657	T	C	SNP	PDZD2	ENST00000397559	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDZD2	HGNC	ENSG00000133401	tier1	-	-	24	0	0.00	1	6	85.71
PHF20	0	genome.wustl.edu	37	20	34505482	34505482	+	Silent	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	20	34505482	34505482	G	A	SNP	PHF20	ENST00000374012	human	ensembl	74_37	+1	known	silent	c.1902	p.V634	0.999	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_C2H2	-	no_errors	PHF20	HGNC	ENSG00000025293	tier1	-	-	74	0	0.00	26	64	70.33
PI4KAP2	0	genome.wustl.edu	37	22	21829514	21829517	+	RNA	DEL	TGTC	TGTC	-			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	TGTC	TGTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	22	21829514	21829517	TGTC	-	DEL	PI4KAP2	ENST00000450651	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000:1.000:1.000	-	-	-	no_errors	PI4KAP2	HGNC	ENSG00000183506	tier1			40	0	0.00	8	8	50.00
PIP5K1B	0	genome.wustl.edu	37	9	71439055	71439055	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	9	71439055	71439055	C	T	SNP	PIP5K1B	ENST00000478500	human	ensembl	74_37	+1	known	missense	c.113	p.P38L	0.000	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1B	HGNC	ENSG00000107242	tier1	-	-	51	0	0.00	24	27	52.94
PKD2	0	genome.wustl.edu	37	4	88929174	88929176	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	4	88929174	88929176	GAG	-	DEL	PKD2	ENST00000237596	human	ensembl	74_37	+1	known	in_frame_del	c.289_291	p.E100in_frame_del	1.000:1.000:1.000	NULL	pfam_PKD1_2_channel,pfam_Ion_trans_dom,pfscan_EF_hand_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2	HGNC	ENSG00000118762	tier1			22	0	0.00	14	2	12.50
PLCB3	0	genome.wustl.edu	37	11	64033845	64033845	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	11	64033845	64033845	G	T	SNP	PLCB3	ENST00000279230	human	ensembl	74_37	+1	known	missense	c.3325	p.A1109S	1.000	pirsf_PLC-beta,pfam_PLC-beta_C	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB3	HGNC	ENSG00000149782	tier1	-	-	17	0	0.00	11	8	42.11
PLEKHA6	0	genome.wustl.edu	37	1	204237354	204237354	+	Silent	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	204237354	204237354	C	T	SNP	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	silent	c.189	p.A63	0.295	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850	tier1	-	-	40	0	0.00	65	12	15.58
PLEKHG3	0	genome.wustl.edu	37	14	65197520	65197520	+	Silent	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	14	65197520	65197520	C	T	SNP	PLEKHG3	ENST00000394691	human	ensembl	74_37	+1	known	silent	c.570	p.S190	0.002	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822	tier1	-	-	42	0	0.00	47	22	31.88
POLR2H	0	genome.wustl.edu	37	3	184086034	184086034	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	3	184086034	184086034	C	T	SNP	POLR2H	ENST00000429568	human	ensembl	74_37	+1	novel	nonsense	c.469	p.R157*	0.987	NULL	pfam_RNA_pol_Rpb8,superfamily_NA-bd_OB-fold,smart_RNA_pol_Rpb8	-	no_errors	POLR2H	HGNC	ENSG00000163882	tier1	-	-	51	0	0.00	65	26	28.57
POTEA	0	genome.wustl.edu	37	8	43152432	43152432	+	RNA	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	8	43152432	43152432	G	A	SNP	POTEA	ENST00000522175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.842	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877	tier1	-	-	126	0	0.00	128	18	12.33
PRDM2	0	genome.wustl.edu	37	1	14107528	14107528	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	14107528	14107528	G	T	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.3238	p.A1080S	0.992	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	tier1	-	-	39	0	0.00	33	4	10.81
PRRC2B	0	genome.wustl.edu	37	9	134321903	134321903	+	Silent	SNP	C	C	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	9	134321903	134321903	C	G	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	silent	c.729	p.S243	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723	tier1	-	-	61	0	0.00	74	11	12.94
QRSL1	0	genome.wustl.edu	37	6	107096922	107096922	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	6	107096922	107096922	T	G	SNP	QRSL1	ENST00000369046	human	ensembl	74_37	+1	known	missense	c.403	p.F135V	0.998	pfam_Amidase,superfamily_Amidase_dom,tigrfam_GatA	pfam_Amidase,superfamily_Amidase_dom,tigrfam_GatA	-	no_errors	QRSL1	HGNC	ENSG00000130348	tier1	-	-	23	0	0.00	4	25	86.21
RCN3	0	genome.wustl.edu	37	19	50031852	50031852	+	Silent	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	19	50031852	50031852	C	T	SNP	RCN3	ENST00000270645	human	ensembl	74_37	+1	known	silent	c.123	p.S41	0.998	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	RCN3	HGNC	ENSG00000142552	tier1	-	-	33	0	0.00	1	21	95.45
REXO1	0	genome.wustl.edu	37	19	1823683	1823683	+	Silent	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	19	1823683	1823683	C	T	SNP	REXO1	ENST00000170168	human	ensembl	74_37	-1	known	silent	c.2118	p.A706	0.998	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1	HGNC	ENSG00000079313	tier1	-	-	17	0	0.00	3	5	62.50
RMND1	0	genome.wustl.edu	37	6	151742424	151742424	+	Silent	SNP	A	A	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	6	151742424	151742424	A	T	SNP	RMND1	ENST00000367303	human	ensembl	74_37	-1	known	silent	c.1035	p.S345	1.000	pfam_DUF155	pfam_DUF155	-	no_errors	RMND1	HGNC	ENSG00000155906	tier1	-	-	47	0	0.00	30	14	31.82
RNLS	0	genome.wustl.edu	37	10	90122339	90122339	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	10	90122339	90122339	C	T	SNP	RNLS	ENST00000331772	human	ensembl	74_37	-1	known	missense	c.670	p.V224I	0.966	pfam_Amino_oxidase	pfam_Amino_oxidase	-	no_errors	RNLS	HGNC	ENSG00000184719	tier1	-	-	47	0	0.00	26	21	44.68
RPS10P7	0	genome.wustl.edu	37	1	201489719	201489719	+	RNA	DEL	A	A	-			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	201489719	201489719	A	-	DEL	RPS10P7	ENST00000441932	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.056	-	-	-	no_errors	RPS10P7	HGNC	ENSG00000223396	tier1			13	0	0.00	7	3	30.00
SARS	0	genome.wustl.edu	37	1	109774243	109774243	+	RNA	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	109774243	109774243	G	A	SNP	SARS	ENST00000471705	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.376	-	-	-	no_errors	SARS	HGNC	ENSG00000031698	tier1	-	-	58	0	0.00	16	16	50.00
SCUBE1	0	genome.wustl.edu	37	22	43600129	43600129	+	Silent	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	22	43600129	43600129	G	A	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	silent	c.2841	p.F947	0.961	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307	tier1	-	-	21	0	0.00	23	14	37.84
SEC31B	0	genome.wustl.edu	37	10	102259267	102259267	+	RNA	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	10	102259267	102259267	G	T	SNP	SEC31B	ENST00000494350	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SEC31B	HGNC	ENSG00000075826	tier1	-	-	40	0	0.00	38	7	15.22
SGK223	0	genome.wustl.edu	37	8	8233763	8233763	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	8	8233763	8233763	C	T	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	missense	c.2156	p.R719Q	0.995	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319	tier1	-	-	63	0	0.00	58	29	32.95
SHE	0	genome.wustl.edu	37	1	154473951	154473951	+	Silent	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	154473951	154473951	G	A	SNP	SHE	ENST00000304760	human	ensembl	74_37	-1	known	silent	c.552	p.P184	0.769	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHE	HGNC	ENSG00000169291	tier1	-	-	60	0	0.00	77	16	17.20
SLC16A13	0	genome.wustl.edu	37	17	6942095	6942095	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	17	6942095	6942095	C	T	SNP	SLC16A13	ENST00000308027	human	ensembl	74_37	+1	known	missense	c.968	p.P323L	1.000	pfam_MFS,pfam_Atg22-like,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Atg22-like,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A13	HGNC	ENSG00000174327	tier1	-	-	35	0	0.00	28	5	15.15
SLIT2	0	genome.wustl.edu	37	4	20543179	20543179	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	4	20543179	20543179	C	G	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.2080	p.P694A	1.000	pfam_Cys-rich_flank_reg_C,smart_Cys-rich_flank_reg_C	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	tier1	-	-	65	0	0.00	49	14	22.22
SPINK5	0	genome.wustl.edu	37	5	147499615	147499615	+	Missense_Mutation	SNP	T	T	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	5	147499615	147499615	T	A	SNP	SPINK5	ENST00000359874	human	ensembl	74_37	+1	known	missense	c.2357	p.L786H	0.406	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom	-	no_errors	SPINK5	HGNC	ENSG00000133710	tier1	-	-	32	0	0.00	12	6	33.33
SULF1	0	genome.wustl.edu	37	8	70541903	70541903	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	8	70541903	70541903	C	T	SNP	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	missense	c.2273	p.P758L	1.000	superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573	tier1	-	-	29	0	0.00	41	14	25.45
SYCP2	0	genome.wustl.edu	37	20	58453093	58453093	+	Silent	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	20	58453093	58453093	G	T	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	silent	c.2949	p.S983	0.090	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074	tier1	-	-	71	0	0.00	73	4	5.19
SYN3	0	genome.wustl.edu	37	22	32992674	32992674	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	22	32992674	32992674	C	T	SNP	SYN3	ENST00000332840	human	ensembl	74_37	-1	known	missense	c.760	p.A254T	0.992	pfam_Synapsin_ATP-bd_dom,pfam_ATP-grasp_RimK-type	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_dom,prints_Synapsin	-	no_errors	SYN3	HGNC	ENSG00000185666	tier1	rs139005191	-	52	0	0.00	61	5	7.58
TCF3	0	genome.wustl.edu	37	19	1632397	1632397	+	Missense_Mutation	SNP	C	C	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	19	1632397	1632397	C	A	SNP	TCF3	ENST00000262965	human	ensembl	74_37	-1	known	missense	c.153	p.E51D	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF3	HGNC	ENSG00000071564	tier1	-	-	30	0	0.00	15	8	34.78
TDRD1	0	genome.wustl.edu	37	10	115986888	115986888	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	10	115986888	115986888	T	G	SNP	TDRD1	ENST00000251864	human	ensembl	74_37	+1	known	missense	c.3233	p.F1078C	0.973	NULL	pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND	-	no_errors	TDRD1	HGNC	ENSG00000095627	tier1	-	-	45	0	0.00	37	20	35.09
TDRD9	0	genome.wustl.edu	37	14	104488603	104488603	+	Missense_Mutation	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	14	104488603	104488603	C	T	SNP	TDRD9	ENST00000409874	human	ensembl	74_37	+1	known	missense	c.2542	p.H848Y	0.624	NULL	pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TDRD9	HGNC	ENSG00000156414	tier1	-	-	54	0	0.00	75	7	8.54
TMEM161A	0	genome.wustl.edu	37	19	19232141	19232141	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	19	19232141	19232141	G	T	SNP	TMEM161A	ENST00000162044	human	ensembl	74_37	-1	known	missense	c.890	p.P297Q	0.976	pfam_Transmembrane_161A/B	pfam_Transmembrane_161A/B	-	no_errors	TMEM161A	HGNC	ENSG00000064545	tier1	-	-	65	0	0.00	73	7	8.75
TOP1MT	0	genome.wustl.edu	37	8	144399896	144399897	+	Frame_Shift_Ins	INS	-	-	C			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	8	144399896	144399897	-	C	INS	TOP1MT	ENST00000329245	human	ensembl	74_37	-1	known	frame_shift_ins	c.1327_1326	p.R442fs	0.199:0.214	pfam_TopoI_cat_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1MT	HGNC	ENSG00000184428	tier1			46	0	0.00	48	39	44.83
TP53	0	genome.wustl.edu	37	17	7577094	7577094	+	Missense_Mutation	SNP	G	G	C			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	17	7577094	7577094	G	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.844	p.R282G	0.997	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	52	0	0.00	0	36	100.00
TRIM17	0	genome.wustl.edu	37	1	228596974	228596974	+	Missense_Mutation	SNP	T	T	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	1	228596974	228596974	T	G	SNP	TRIM17	ENST00000295033	human	ensembl	74_37	-1	known	missense	c.782	p.K261T	0.614	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM17	HGNC	ENSG00000162931	tier1	-	-	50	0	0.00	61	21	25.30
TUBBP5	0	genome.wustl.edu	37	9	141044707	141044707	+	RNA	DEL	A	A	-			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	9	141044707	141044707	A	-	DEL	TUBBP5	ENST00000503395	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.504	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247	tier1			11	0	0.00	25	5	16.67
UBASH3B	0	genome.wustl.edu	37	11	122667713	122667713	+	Silent	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	11	122667713	122667713	G	T	SNP	UBASH3B	ENST00000284273	human	ensembl	74_37	+1	known	silent	c.1329	p.V443	1.000	pfam_His_Pase_superF_clade-1	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_SH3_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,smart_UBA/transl_elong_EF1B_N_euk,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3B	HGNC	ENSG00000154127	tier1	-	-	64	0	0.00	20	4	16.67
UBQLN1	0	genome.wustl.edu	37	9	86294848	86294848	+	Missense_Mutation	SNP	T	T	C			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	9	86294848	86294848	T	C	SNP	UBQLN1	ENST00000376395	human	ensembl	74_37	-1	known	missense	c.553	p.M185V	1.000	smart_STI1_HS-bd	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN1	HGNC	ENSG00000135018	tier1	-	-	64	0	0.00	20	52	72.22
USP32	0	genome.wustl.edu	37	17	58289386	58289386	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	17	58289386	58289386	C	G	SNP	USP32	ENST00000300896	human	ensembl	74_37	-1	known	missense	c.2178	p.K726N	1.000	NULL	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_EF_hand_dom,smart_Pept_C19_DUSP,pfscan_EF_hand_dom,pfscan_Peptidase_C19/C67,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	tier1	-	-	43	0	0.00	51	6	10.53
USP51	0	genome.wustl.edu	37	X	55514608	55514608	+	Frame_Shift_Del	DEL	A	A	-			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	X	55514608	55514608	A	-	DEL	USP51	ENST00000500968	human	ensembl	74_37	-1	known	frame_shift_del	c.765	p.F255fs	0.999	pfam_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP51	HGNC	ENSG00000247746	tier1			47	0	0.00	26	2	7.14
VPS18	0	genome.wustl.edu	37	15	41192273	41192273	+	Silent	SNP	C	C	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	15	41192273	41192273	C	T	SNP	VPS18	ENST00000220509	human	ensembl	74_37	+1	known	silent	c.1257	p.P419	0.102	pfam_Pep3_Vps18,superfamily_ARM-type_fold	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142	tier1	-	-	68	0	0.00	36	11	23.40
WBSCR27	0	genome.wustl.edu	37	7	73256371	73256371	+	Missense_Mutation	SNP	G	G	A			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	7	73256371	73256371	G	A	SNP	WBSCR27	ENST00000297873	human	ensembl	74_37	-1	known	missense	c.100	p.R34C	0.005	pfam_UbiE/COQ5_MeTrFase	pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase	-	no_errors	WBSCR27	HGNC	ENSG00000165171	tier1	-	-	65	0	0.00	37	28	43.08
WDR60	0	genome.wustl.edu	37	7	158695219	158695219	+	Silent	SNP	T	T	C			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	7	158695219	158695219	T	C	SNP	WDR60	ENST00000407559	human	ensembl	74_37	+1	known	silent	c.1290	p.I430	0.962	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870	tier1	-	-	27	0	0.00	30	4	11.76
ZBTB2	0	genome.wustl.edu	37	6	151687546	151687546	+	Missense_Mutation	SNP	C	C	G			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	6	151687546	151687546	C	G	SNP	ZBTB2	ENST00000325144	human	ensembl	74_37	-1	known	missense	c.655	p.E219Q	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB2	HGNC	ENSG00000181472	tier1	-	-	23	0	0.00	38	13	25.49
ZMYND8	0	genome.wustl.edu	37	20	45927652	45927652	+	Missense_Mutation	SNP	G	G	T			TCGA-LN-A49V-01A-11D-A247-09	TCGA-LN-A49V-10A-01D-A247-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	334db6d4-d008-4e0f-8307-4bb31e042d20	58bf59e3-00d3-405a-bfc9-902bcb778779	20	45927652	45927652	G	T	SNP	ZMYND8	ENST00000536340	human	ensembl	74_37	-1	known	missense	c.295	p.P99T	1.000	superfamily_Znf_FYVE_PHD	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP_dom,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040	tier1	-	-	69	0	0.00	71	4	5.33
